Contig-U09528-1 |
Contig ID |
Contig-U09528-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
gap included |
Contig length |
902 |
Chromosome number (1..6, M) |
2F |
Chromosome length |
193677 |
Start point |
50076 |
End point |
49166 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
5 |
Number of EST |
6 |
Link to clone list |
U09528 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.16 |
Homology vs DNA |
|
protein update |
2009. 6.26 |
Homology vs Protein |
Query= Contig-U09528-1 (Contig-U09528-1Q) /CSM_Contig/Contig-U09528-1Q.Seq.d (912 letters)
Database: nrp_A 3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
T10860(T10860) alpha-galactosidase (EC 3.2.1.22) - kidney bean ... 198 5e-58 AJ877911_1(AJ877911|pid:none) Coffea arabica mRNA for alpha gala... 193 2e-57 (Q9FXT4) RecName: Full=Alpha-galactosidase; EC=3.2.1.22... 201 9e-57 AP008216_933(AP008216|pid:none) Oryza sativa (japonica cultivar-... 201 9e-57 AJ877912_1(AJ877912|pid:none) Coffea canephora mRNA for alpha-ga... 193 9e-57 EF085713_1(EF085713|pid:none) Picea sitchensis clone WS0294_N01 ... 195 1e-56 AF289080_1(AF289080|pid:none) Lycopersicon esculentum alpha-gala... 189 3e-56 (P14749) RecName: Full=Alpha-galactosidase; EC=3.2.1.22... 196 1e-55 A12675_1(A12675|pid:none) guar alpha galactosidase cDNA. 196 1e-55 AP005737_4(AP005737|pid:none) Oryza sativa Japonica Group genomi... 194 3e-55 AP008213_881(AP008213|pid:none) Oryza sativa (japonica cultivar-... 194 3e-55 BT033908_1(BT033908|pid:none) Zea mays full-length cDNA clone ZM... 188 8e-54 EU954969_1(EU954969|pid:none) Zea mays clone 1496122 alpha-galac... 188 8e-54 AY074321_1(AY074321|pid:none) Arabidopsis thaliana putative alph... 192 1e-53 AL163763_27(AL163763|pid:none) Arabidopsis thaliana DNA chromoso... 192 1e-53 AY738151_1(AY738151|pid:none) Salvia miltiorrhiza glycosyl hydro... 190 2e-53 AY085529_1(AY085529|pid:none) Arabidopsis thaliana clone 156141 ... 180 2e-53 AK317201_1(AK317201|pid:none) Arabidopsis thaliana AT5G08370 mRN... 180 2e-53 AL392174_10(AL392174|pid:none) Arabidopsis thaliana DNA chromoso... 180 2e-53 AM429836_1(AM429836|pid:none) Vitis vinifera contig VV78X092589.... 180 1e-52 AJ630105_1(AJ630105|pid:none) Pisum sativum mRNA for alpha-galac... 177 3e-52 CP000927_2119(CP000927|pid:none) Caulobacter sp. K31, complete g... 172 3e-52 CP000360_1673(CP000360|pid:none) Acidobacteria bacterium Ellin34... 182 6e-52 AL392174_11(AL392174|pid:none) Arabidopsis thaliana DNA chromoso... 170 6e-51 AY093200_1(AY093200|pid:none) Arabidopsis thaliana alpha-galacto... 170 6e-51 AC023240_4(AC023240|pid:none) Oryza sativa chromosome 10 BAC OSJ... 175 2e-50 AY374437_1(AY374437|pid:none) Petunia x hybrida alpha-galactosid... 170 4e-50 BT033680_1(BT033680|pid:none) Zea mays full-length cDNA clone ZM... 176 5e-50 AL939104_273(AL939104|pid:none) Streptomyces coelicolor A3(2) co... 174 7e-49 AC153004_15(AC153004|pid:none) Medicago truncatula clone mth2-10... 168 1e-48 AB025362_1(AB025362|pid:none) Clostridium josui agaA gene for al... 169 1e-48 CP001472_48(CP001472|pid:none) Acidobacterium capsulatum ATCC 51... 174 2e-48 AY253299_1(AY253299|pid:none) Carica papaya alpha-galactosidase ... 162 2e-48 BA000030_1480(BA000030|pid:none) Streptomyces avermitilis MA-468... 171 4e-48 CP001348_1561(CP001348|pid:none) Clostridium cellulolyticum H10,... 163 1e-46 CP001348_1205(CP001348|pid:none) Clostridium cellulolyticum H10,... 158 2e-43 CP000282_1591(CP000282|pid:none) Saccharophagus degradans 2-40, ... 143 5e-42 CP000473_690(CP000473|pid:none) Solibacter usitatus Ellin6076, c... 140 8e-42 AY526725_4(AY526725|pid:none) Cellvibrio mixtus Unk1 (unk1), Unk... 135 7e-40 CP000875_3874(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 135 1e-38 CR626927_4081(CR626927|pid:none) Bacteroides fragilis NCTC 9343,... 135 2e-38 AE015928_3064(AE015928|pid:none) Bacteroides thetaiotaomicron VP... 133 5e-38 CP000685_4908(CP000685|pid:none) Flavobacterium johnsoniae UW101... 131 2e-36 BA000030_632(BA000030|pid:none) Streptomyces avermitilis MA-4680... 155 2e-36 AP006841_1487(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,... 127 3e-36 CR626927_1347(CR626927|pid:none) Bacteroides fragilis NCTC 9343,... 127 3e-36 CP001504_1906(CP001504|pid:none) Burkholderia glumae BGR1 chromo... 142 4e-36 EU961965_1(EU961965|pid:none) Zea mays clone 239357 unknown mRNA. 153 9e-36 AF246262_1(AF246262|pid:none) Phanerochaete chrysosporium alpha-... 145 2e-33 BA000030_2193(BA000030|pid:none) Streptomyces avermitilis MA-468... 132 2e-33 AB018691_1(AB018691|pid:none) Mortierella vinacea mRNA for alpha... 144 5e-33 EF677985_1(EF677985|pid:none) Picea sitchensis clone WS02815_N10... 142 2e-32 AF246263_1(AF246263|pid:none) Phanerochaete chrysosporium alpha-... 142 2e-32 AM420293_3062(AM420293|pid:none) Saccharopolyspora erythraea NRR... 112 5e-32 AE015928_3590(AE015928|pid:none) Bacteroides thetaiotaomicron VP... 118 8e-31 AP007157_136(AP007157|pid:none) Aspergillus oryzae RIB40 genomic... 120 2e-30 (P06280) RecName: Full=Alpha-galactosidase A; EC=3.2.1.... 106 5e-30 AX840234_1(AX840234|pid:none) Sequence 8 from Patent WO03073839. 106 5e-30 AY892090_1(AY892090|pid:none) Synthetic construct Homo sapiens c... 106 5e-30 (Q99172) RecName: Full=Alpha-galactosidase; EC=3.2.1.22... 133 7e-30 BC106337_1(BC106337|pid:none) Xenopus laevis hypothetical protei... 107 4e-29 AB037407_1(AB037407|pid:none) Saccharomyces kluyveri MELk2 gene ... 130 8e-29 AP006841_271(AP006841|pid:none) Bacteroides fragilis YCH46 DNA, ... 109 1e-27 (Q9URZ0) RecName: Full=Probable alpha-galactosidase; EC... 106 2e-27 AB038520_1(AB038520|pid:none) Saccharomyces kluyveri MELk4 gene ... 125 3e-27 (Q11129) RecName: Full=Alpha-galactosidase; EC=3.2.1.22... 122 1e-26 AK040081_1(AK040081|pid:none) Mus musculus 0 day neonate thymus ... 104 2e-26 CP000927_312(CP000927|pid:none) Caulobacter sp. K31, complete ge... 121 3e-26 AE015928_2662(AE015928|pid:none) Bacteroides thetaiotaomicron VP... 103 3e-26 AK166204_1(AK166204|pid:none) Mus musculus mammary gland RCB-052... 104 3e-26 AK145148_1(AK145148|pid:none) Mus musculus mammary gland RCB-052... 104 3e-26 AP009380_2031(AP009380|pid:none) Porphyromonas gingivalis ATCC 3... 97 5e-26 (Q09187) RecName: Full=Alpha-galactosidase; EC=3.2.1.22... 120 6e-26 (P41947) RecName: Full=Alpha-galactosidase 6; EC=3.2.1.... 120 8e-26 AB475106_1(AB475106|pid:none) Fusarium oxysporum Foap2 mRNA for ... 104 9e-26 AB257564_1(AB257564|pid:none) Lachancea thermotolerans MELth2 ge... 119 1e-25 AF412041_1(AF412041|pid:none) Saccharomyces cerevisiae alpha-gal... 119 1e-25 AB257563_1(AB257563|pid:none) Lachancea thermotolerans MELth1 ge... 119 1e-25 (Q03647) RecName: Full=Alpha-galactosidase; EC=3.2.1.22... 119 2e-25 AE015924_75(AE015924|pid:none) Porphyromonas gingivalis W83, com... 95 3e-25 AF251064_1(AF251064|pid:none) Oryza sativa alpha-galactosidase m... 96 3e-25 AB183020_1(AB183020|pid:none) Saccharomyces kluyveri MELk gene f... 118 3e-25 AB037406_1(AB037406|pid:none) Saccharomyces kluyveri MELk1 gene ... 118 3e-25 AB183019_1(AB183019|pid:none) Saccharomyces kluyveri MELk gene f... 118 3e-25 BT082350_1(BT082350|pid:none) Anoplopoma fimbria clone afim-evh-... 99 3e-25 CP000139_618(CP000139|pid:none) Bacteroides vulgatus ATCC 8482, ... 100 4e-25 AB037408_1(AB037408|pid:none) Saccharomyces kluyveri MELk3 gene ... 117 5e-25 (P41945) RecName: Full=Alpha-galactosidase 2; EC=3.2.1.... 115 2e-24 CP001071_1165(CP001071|pid:none) Akkermansia muciniphila ATCC BA... 104 2e-24 AE015928_4155(AE015928|pid:none) Bacteroides thetaiotaomicron VP... 102 1e-23 (Q9UVD6) RecName: Full=Alpha-galactosidase; EC=3.2.1.22... 112 1e-23 EU106878_1(EU106878|pid:none) Talaromyces emersonii alpha-galact... 112 1e-23 FN314309_1(FN314309|pid:none) Schistosoma japonicum isolate Anhu... 94 5e-23 AP008216_929(AP008216|pid:none) Oryza sativa (japonica cultivar-... 84 7e-23 CP000927_2401(CP000927|pid:none) Caulobacter sp. K31, complete g... 110 8e-23 AP007155_1128(AP007155|pid:none) Aspergillus oryzae RIB40 genomi... 108 2e-22 (Q90744) RecName: Full=Alpha-N-acetylgalactosaminidase; ... 107 7e-22 Z99716_17(Z99716|pid:none) Human DNA sequence from clone CTA-250... 107 7e-22 T04422(T04422) alpha-galactosidase (EC 3.2.1.22) - barley (fragm... 106 9e-22 EU442573_1(EU442573|pid:none) Sus scrofa N-acetylgalactosaminida... 105 2e-21 EU579460_1(EU579460|pid:none) Ovis aries N-acetylgalactosaminida... 105 2e-21 AJ223966_1(AJ223966|pid:none) Mus musculus NAGA gene. 105 2e-21 (Q9QWR8) RecName: Full=Alpha-N-acetylgalactosaminidase; ... 105 2e-21 AB475107_1(AB475107|pid:none) Fusarium oxysporum Foap1 mRNA for ... 97 2e-21 BA000030_1082(BA000030|pid:none) Streptomyces avermitilis MA-468... 105 2e-21 BC114813_1(BC114813|pid:none) Bos taurus N-acetylgalactosaminida... 105 2e-21 (Q66H12) RecName: Full=Alpha-N-acetylgalactosaminidase; ... 105 2e-21 CT573213_3923(CT573213|pid:none) Frankia alni str. ACN14A chromo... 86 3e-21 T24018(T24018) hypothetical protein R07B7.11 - Caenorhabditis el... 87 6e-21 BC021631_1(BC021631|pid:none) Mus musculus N-acetyl galactosamin... 103 6e-21 BC154863_1(BC154863|pid:none) Xenopus tropicalis N-acetylgalacto... 103 8e-21 AM270241_24(AM270241|pid:none) Aspergillus niger contig An11c024... 103 1e-20 AJ290422_2(AJ290422|pid:none) Fugu rubripes gra2 gene (partial),... 102 1e-20 Y18586_1(Y18586|pid:none) Aspergillus niger aglB gene. 102 1e-20 FN359186_2(FN359186|pid:none) Schistosoma mansoni genome sequenc... 89 4e-20 AJ009956_1(AJ009956|pid:none) Penicillium simplicissimum mRNA fo... 100 5e-20 DQ311273_1(DQ311273|pid:none) Bombyx mori alpha-N-acetylgalactos... 87 1e-19 CU633870_40(CU633870|pid:none) Podospora anserina genomic DNA ch... 85 4e-19 FJ843023_1(FJ843023|pid:none) Aspergillus fumigatus strain IMI 3... 98 4e-19 Z99716_16(Z99716|pid:none) Human DNA sequence from clone CTA-250... 94 8e-18 BT077336_1(BT077336|pid:none) Lepeophtheirus salmonis clone lsal... 81 3e-17 AB037976_1(AB037976|pid:none) Acremonium sp. No.413 nagA mRNA fo... 88 5e-16 AE013599_2386(AE013599|pid:none) Drosophila melanogaster chromos... 86 2e-15 AE015928_65(AE015928|pid:none) Bacteroides thetaiotaomicron VPI-... 85 4e-15 CP001472_1509(CP001472|pid:none) Acidobacterium capsulatum ATCC ... 71 9e-13 AM270108_9(AM270108|pid:none) Aspergillus niger contig An06c0020... 75 4e-12 CP000360_3245(CP000360|pid:none) Acidobacteria bacterium Ellin34... 57 1e-10 FN357709_3(FN357709|pid:none) Schistosoma mansoni genome sequenc... 68 5e-10 CP001032_1356(CP001032|pid:none) Opitutus terrae PB90-1, complet... 59 2e-08 AK067743_1(AK067743|pid:none) Oryza sativa Japonica Group cDNA c... 49 1e-07 BT065333_1(BT065333|pid:none) Zea mays full-length cDNA clone ZM... 48 3e-07 EF678224_1(EF678224|pid:none) Picea sitchensis clone WS0285_J03 ... 51 5e-07 CP000473_1448(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 53 5e-07 CP001618_53(CP001618|pid:none) Beutenbergia cavernae DSM 12333, ... 51 5e-07 FJ374538_1(FJ374538|pid:none) Secale cereale putative alpha-gala... 45 3e-06 FJ374535_1(FJ374535|pid:none) Triticum urartu putative alpha-gal... 45 3e-06 CP000750_3435(CP000750|pid:none) Kineococcus radiotolerans SRS30... 51 5e-05 EF676204_1(EF676204|pid:none) Picea sitchensis clone WS02719_G07... 51 6e-05 AP009256_1525(AP009256|pid:none) Bifidobacterium adolescentis AT... 46 5e-04 BC108078_1(BC108078|pid:none) Danio rerio zgc:123333, mRNA (cDNA... 45 0.003 AC139707_24(AC139707|pid:none) Medicago truncatula clone mth2-16... 44 0.006 AK297148_1(AK297148|pid:none) Homo sapiens cDNA FLJ56739 complet... 43 0.013 BT045564_1(BT045564|pid:none) Salmo salar clone ssal-rgf-524-383... 42 0.028 CP001344_4657(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 42 0.028 FN314308_1(FN314308|pid:none) Schistosoma japonicum isolate Anhu... 38 0.41 BT084046_1(BT084046|pid:none) Zea mays full-length cDNA clone ZM... 37 0.91 CP000605_1537(CP000605|pid:none) Bifidobacterium longum DJO10A, ... 37 1.2 AB244722_1(AB244722|pid:none) Sphingobacterium sp. V-54 dex1, hb... 35 3.5 AY037892_1(AY037892|pid:none) Phytophthora cinnamomi pyruvate ph... 35 3.5 AY037892_2(AY037892|pid:none) Phytophthora cinnamomi pyruvate ph... 35 3.5 AY037893_1(AY037893|pid:none) Phytophthora cinnamomi pyruvate ph... 35 3.5 CP000504_1351(CP000504|pid:none) Pyrobaculum islandicum DSM 4184... 35 3.5 AC137077_24(AC137077|pid:none) Medicago truncatula clone mth2-8g... 35 3.5 CP001074_1124(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 35 4.5 AY809794_1(AY809794|pid:none) Schistosoma japonicum SJCHGC03011 ... 34 6.0 CP000744_4763(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 34 7.7 CP000493_958(CP000493|pid:none) Hyperthermus butylicus DSM 5456,... 34 7.7
>T10860(T10860) alpha-galactosidase (EC 3.2.1.22) - kidney bean &U12927_1(U12927|pid:none) Length = 425
Score = 198 bits (504), Expect(2) = 5e-58 Identities = 93/184 (50%), Positives = 127/184 (69%) Frame = +2
Query: 272 TGRPMFFSLCDWGYENPWTFGMSVGNSWRTTPDIKDNWDSMLSNLMAQAPITSFSGIGGF 451 +GRP+FFSLC+WG E+P T+ SVGNSWRTT DI+D W+SM+S S++G GG+ Sbjct: 215 SGRPIFFSLCEWGSEDPATWAKSVGNSWRTTGDIEDKWESMISRADLNDEWASYAGPGGW 274
Query: 452 NDPDMMMVGNGGMSNTEYVSHFSLWSLLNAPLIAGCDLIDIDQETLSILTASEVIAINQD 631 NDPDM+ VGNGGM+ EY +HFS+W+L APL+ GCD+ +D T +L+ EVIA+NQD Sbjct: 275 NDPDMLEVGNGGMTTEEYRAHFSIWALAKAPLLIGCDIRALDVTTKELLSNEEVIAVNQD 334
Query: 632 PLGVQGSLVKSYNGGLQQIWAKPLSNGARAVVLFNTDTNPATIELLWGNIWMEPSQQLSI 811 LGVQG VKS N ++WA PLSN AV+L+N ++ A + W +I ++P + Sbjct: 335 KLGVQGKKVKSNND--LEVWAGPLSNNRLAVILWNRSSSKAKVTASWSDIGLKPGTLVDA 392
Query: 812 RNLW 823 R+LW Sbjct: 393 RDLW 396
Score = 50.4 bits (119), Expect(2) = 5e-58 Identities = 23/44 (52%), Positives = 31/44 (70%) Frame = +1
Query: 133 GSYGYEANDAQTYAEWGIDYVKEDWCYATLENPQQRYQIMSQAL 264 GS G+E DA+T+A WGIDY+K D C +P++RY MS+AL Sbjct: 169 GSLGHEEQDAKTFASWGIDYLKYDNCENKNISPKERYPPMSKAL 212
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3204285 Number of Hits to DB: 1,549,361,045 Number of extensions: 33266393 Number of successful extensions: 80191 Number of sequences better than 10.0: 157 Number of HSP's gapped: 79944 Number of HSP's successfully gapped: 290 Length of query: 304 Length of database: 1,040,966,779 Length adjustment: 128 Effective length of query: 176 Effective length of database: 630,818,299 Effective search space: 111024020624 Effective search space used: 111024020624 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
5 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |