Contig-U09528-1
Contig ID Contig-U09528-1
Contig update 2002. 9.13
Contig sequence
>Contig-U09528-1 (Contig-U09528-1Q) /CSM_Contig/Contig-U09528-1Q.Seq.d
ATTTTTTATTNTTCTAAATTTTTTTAAAGAAATAAAATAAAAAAAAAAAT
GATGAAAATTGCTGCAACTTTATTAGCAACAATTGCATTAGCAACAGTAA
ATGCTTTGGATAATGGTTTAG----------TGGTAGTTATGGATATGAA
GCTAATGACGCACAAACTTACGCAGAATGGGGTATTGATTATGTTAAGGA
AGATTGGTGTTATGCTACATTGGAGAATCCACAACAACGTTATCAAATTA
TGTCACAAGCATTAAAATGCAACTGGTAGACCAATGTTCTTTTCACTCTG
TGATTGGGGTTATGAGAATCCTTGGACTTTTGGTATGAGTGTCGGCAACT
CTTGGAGAACTACACCAGATATTAAAGACAATTGGGACAGCATGCTCTCC
AACCTTATGGCACAAGCACCAATCACCTCCTTCTCGGGTATCGGTGGTTT
CAACGACCCTGACATGATGATGGTTGGCAATGGTGGTATGTCCAACACAG
AGTACGTGTCACACTTTTCCTTATGGTCCTTATTGAATGCCCCACTCATT
GCAGGATGTGACTTGATTGATATTGATCAAGAGACATTATCAATTTTAAC
AGCCTCTGAAGTCATTGCAATTAATCAAGATCCATTAGGTGTACAAGGAT
CATTGGTTAAATCATATAATGGTGGTTTACAACAAATTTGGGCTAAACCT
TTATCAAATGGTGCTAGAGCTGTAGTTTTATTCAATACCGATACTAATCC
AGCCACTATTGAATTATTATGGGGCAATATTTGGATGGAGCCATCTCAAC
AATTATCAATTAGAAATTTATGGACTCAAACAAATCTTGGAACTTTTACT
GAATCTTAGAAAGNATTCTTTAATTCCACCACAGGTGTATTATGTTAACT
TAACACCAACAA

Gap gap included
Contig length 902
Chromosome number (1..6, M) 2F
Chromosome length 193677
Start point 50076
End point 49166
Strand (PLUS/MINUS) MINUS
Number of clones 5
Number of EST 6
Link to clone list U09528
List of clone(s)

est1=VFA335F,1,122
est2=VFD114Z,123,904
est3=VFA771Z,140,875
est4=VFK232Z,188,875
est5=VFA335Z,237,849
est6=VFJ376Z,646,749
Translated Amino Acid sequence
ifyxskff*RNKIKKKMMKIAATLLATIALATVNALDNGL---

---GSYGYEANDAQTYAEWGIDYVKEDWCYATLENPQQRYQIMSQALKCNW*tnvlftl*
lgl*esldfwyecrqllenytry*rqlgqhalqpygtstnhlllgyrwfqrp*hddgwqw
wyvqhrvrvtlflmvliecpthcrm*ld*y*srdiinfnsl*shcn*srsirctriig*i
i*wwfttnlg*tfikwc*scsfiqyry*sshy*iimgqyldgaistiin*kfmdsnkswn
fy*ilexil*fhhrcimlt*hqq


Translated Amino Acid sequence (All Frames)
Frame A:
ifyxskff*RNKIKKKMMKIAATLLATIALATVNALDNGL---

---w*lwi*s**rtnlrrmgy*lc*grlvlcyigestttlsnyvtsikmqlvdqcsfhsv
igvmrilgllv*vsatlgelhqilktigtacsptlwhkhqsppsrvsvvsttlt**wlam
vvcptqstchtfpygpy*mphslqdvt*lilikrhyqf*qplkslqlikih*vykdhwln
himvvynkfglnlyqmvlel*fysipiliqpllnyygaifgwshlnnyqleiyglkqile
lllnlrkxslippqvyyvnltpt

Frame B:
ffixlnffkeik*kkk**kllqly*qqlh*qq*mlwimv*---

---GSYGYEANDAQTYAEWGIDYVKEDWCYATLENPQQRYQIMSQALKCNW*tnvlftl*
lgl*esldfwyecrqllenytry*rqlgqhalqpygtstnhlllgyrwfqrp*hddgwqw
wyvqhrvrvtlflmvliecpthcrm*ld*y*srdiinfnsl*shcn*srsirctriig*i
i*wwfttnlg*tfikwc*scsfiqyry*sshy*iimgqyldgaistiin*kfmdsnkswn
fy*ilexil*fhhrcimlt*hqq

Frame C:
flxf*iflkk*nkkkndenccnfisnncisnskcfg*wf---

---vvmdmklmthkltqngvlimlrkigvmlhwrihnnviklchkh*natgrpmffslcd
wgyenpwtfgmsvgnswrttpdikdnwdsmlsnlmaqapitsfsgiggfndpdmmmvgng
gmsnteyvshfslwsllnapliagcdlididqetlsiltaseviainqdplgvqgslvks
yngglqqiwakplsngaravvlfntdtnpatiellwgniwmepsqqlsirnlwtqtnlgt
ftes*kxffnsttgvlc*lntn

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U09528-1 (Contig-U09528-1Q)
/CSM_Contig/Contig-U09528-1Q.Seq.d
(912 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U09528-1 (Contig-U09528-1Q) /CSM_Contig/Conti... 1671 0.0
Contig-U13983-1 (Contig-U13983-1Q) /CSM_Contig/Conti... 40 0.004
Contig-U14460-1 (Contig-U14460-1Q) /CSM_Contig/Conti... 36 0.064
Contig-U11152-1 (Contig-U11152-1Q) /CSM_Contig/Conti... 36 0.064
Contig-U08816-1 (Contig-U08816-1Q) /CSM_Contig/Conti... 36 0.064
Contig-U04026-1 (Contig-U04026-1Q) /CSM_Contig/Conti... 36 0.064
Contig-U13086-1 (Contig-U13086-1Q) /CSM_Contig/Conti... 34 0.25
Contig-U11451-1 (Contig-U11451-1Q) /CSM_Contig/Conti... 34 0.25
Contig-U11309-1 (Contig-U11309-1Q) /CSM_Contig/Conti... 34 0.25
Contig-U11082-1 (Contig-U11082-1Q) /CSM_Contig/Conti... 34 0.25

>Contig-U09528-1 (Contig-U09528-1Q) /CSM_Contig/Contig-U09528-1Q.Seq.d
Length = 912

Score = 1671 bits (843), Expect = 0.0
Identities = 901/912 (98%)
Strand = Plus / Plus


Query: 1 attttttattnttctaaatttttttaaagaaataaaatnnnnnnnnnnntgatgaaaatt 60
|||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 attttttattnttctaaatttttttaaagaaataaaataaaaaaaaaaatgatgaaaatt 60


Query: 61 gctgcaactttattagcaacaattgcattagcaacagtaaatgctttggataatggttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctgcaactttattagcaacaattgcattagcaacagtaaatgctttggataatggttta 120


Query: 121 gnnnnnnnnnntggtagttatggatatgaagctaatgacgcacaaacttacgcagaatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gnnnnnnnnnntggtagttatggatatgaagctaatgacgcacaaacttacgcagaatgg 180


Query: 181 ggtattgattatgttaaggaagattggtgttatgctacattggagaatccacaacaacgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggtattgattatgttaaggaagattggtgttatgctacattggagaatccacaacaacgt 240


Query: 241 tatcaaattatgtcacaagcattaaaatgcaactggtagaccaatgttcttttcactctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tatcaaattatgtcacaagcattaaaatgcaactggtagaccaatgttcttttcactctg 300


Query: 301 tgattggggttatgagaatccttggacttttggtatgagtgtcggcaactcttggagaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgattggggttatgagaatccttggacttttggtatgagtgtcggcaactcttggagaac 360


Query: 361 tacaccagatattaaagacaattgggacagcatgctctccaaccttatggcacaagcacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tacaccagatattaaagacaattgggacagcatgctctccaaccttatggcacaagcacc 420


Query: 421 aatcacctccttctcgggtatcggtggtttcaacgaccctgacatgatgatggttggcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aatcacctccttctcgggtatcggtggtttcaacgaccctgacatgatgatggttggcaa 480


Query: 481 tggtggtatgtccaacacagagtacgtgtcacacttttccttatggtccttattgaatgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tggtggtatgtccaacacagagtacgtgtcacacttttccttatggtccttattgaatgc 540


Query: 541 cccactcattgcaggatgtgacttgattgatattgatcaagagacattatcaattttaac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cccactcattgcaggatgtgacttgattgatattgatcaagagacattatcaattttaac 600


Query: 601 agcctctgaagtcattgcaattaatcaagatccattaggtgtacaaggatcattggttaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 agcctctgaagtcattgcaattaatcaagatccattaggtgtacaaggatcattggttaa 660


Query: 661 atcatataatggtggtttacaacaaatttgggctaaacctttatcaaatggtgctagagc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 atcatataatggtggtttacaacaaatttgggctaaacctttatcaaatggtgctagagc 720


Query: 721 tgtagttttattcaataccgatactaatccagccactattgaattattatggggcaatat 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tgtagttttattcaataccgatactaatccagccactattgaattattatggggcaatat 780


Query: 781 ttggatggagccatctcaacaattatcaattagaaatttatggactcaaacaaatcttgg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ttggatggagccatctcaacaattatcaattagaaatttatggactcaaacaaatcttgg 840


Query: 841 aacttttactgaatcttagaaagnattctttaattccaccacaggtgtattatgttaact 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 aacttttactgaatcttagaaagnattctttaattccaccacaggtgtattatgttaact 900


Query: 901 taacaccaacaa 912
||||||||||||
Sbjct: 901 taacaccaacaa 912


>Contig-U13983-1 (Contig-U13983-1Q) /CSM_Contig/Contig-U13983-1Q.Seq.d
Length = 1480

Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 666 ataatggtggtttacaacaa 685
||||||||||||||||||||
Sbjct: 758 ataatggtggtttacaacaa 777


>Contig-U14460-1 (Contig-U14460-1Q) /CSM_Contig/Contig-U14460-1Q.Seq.d
Length = 139

Score = 36.2 bits (18), Expect = 0.064
Identities = 18/18 (100%)
Strand = Plus / Minus


Query: 19 tttttttaaagaaataaa 36
||||||||||||||||||
Sbjct: 127 tttttttaaagaaataaa 110


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9041
Number of Sequences: 6905
Number of extensions: 9041
Number of successful extensions: 880
Number of sequences better than 10.0: 91
length of query: 912
length of database: 5,674,871
effective HSP length: 16
effective length of query: 896
effective length of database: 5,564,391
effective search space: 4985694336
effective search space used: 4985694336
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.16
Homology vs DNA
Query= Contig-U09528-1 (Contig-U09528-1Q) /CSM_Contig/Contig-U09528-1Q.Seq.d
(912 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ430402) Dictyostelium discoideum cDNA clone:ddv7k03, 3' e... 1271 0.0 2
(BJ428806) Dictyostelium discoideum cDNA clone:ddv1f09, 3' e... 1174 0.0 1
(BJ433324) Dictyostelium discoideum cDNA clone:ddv21o08, 3' ... 1136 0.0 2
(BJ429202) Dictyostelium discoideum cDNA clone:ddv2n17, 3' e... 1136 0.0 3
(BJ410641) Dictyostelium discoideum cDNA clone:ddv1f09, 5' e... 141 5e-33 3
(BJ432796) Dictyostelium discoideum cDNA clone:ddv19h19, 3' ... 101 5e-17 1
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 54 0.009 1
(BT008497) Arabidopsis thaliana At5g08380 gene, complete cds. 46 0.014 2
(BX831749) Arabidopsis thaliana Full-length cDNA Complete se... 46 0.015 2
(AY093200) Arabidopsis thaliana alpha-galactosidase-like pro... 46 0.015 2
(BX832652) Arabidopsis thaliana Full-length cDNA Complete se... 46 0.015 2
(FF578722) TTEDO68THB Tetrahymena thermophila conjugation cD... 40 0.54 2
(EI325426) GM_WBc0062H08.r GM_WBc Glycine max genomic clone ... 44 0.87 2
(CL885077) abf72b06.y1 Soybean random, unfiltered genomic li... 44 1.1 2
(EI285069) GM_WBc0004G19.r GM_WBc Glycine max genomic clone ... 44 1.5 2
(EI351497) GM_WBc0100F23.r GM_WBc Glycine max genomic clone ... 44 1.5 2
(EI355846) GM_WBc0107A08.r GM_WBc Glycine max genomic clone ... 44 1.6 2
(EI297129) GM_WBc0021J04.r GM_WBc Glycine max genomic clone ... 44 1.6 2
(DX414067) SOYC202TV LargeInsertSoybeanGenLibBuild4 Glycine ... 44 1.7 2
(ED770876) GM_WBb0145M06.f GM_WBb Glycine max genomic clone ... 44 1.7 2
(ED644405) GM_WBa0057L15.r GM_WBa Glycine max genomic clone ... 44 1.8 2
(ED635453) GM_WBa0041J21.r GM_WBa Glycine max genomic clone ... 44 1.9 2
(CZ526800) GMW2-145M6a.b1 GMW2 Glycine max genomic, genomic ... 44 2.0 2
(AV564036) Arabidopsis thaliana cDNA clone:SQ197g11F, 3' end. 46 2.3 1
(DR376135) 106961 CERES-148 Arabidopsis thaliana cDNA clone ... 46 2.3 1
(DR371703) 103736 CERES-147 Arabidopsis thaliana cDNA clone ... 46 2.3 1
(BP655800) Arabidopsis thaliana cDNA clone:RAFL19-23-D14, 3'... 46 2.3 1
(BP635780) Arabidopsis thaliana cDNA clone:RAFL18-02-E05, 3'... 46 2.3 1
(EX956111) IF1_63_A01_A067.b1 Iris fulva EST Library IF1 Iri... 46 2.3 1
(EX953764) IF1_20_D07_A067.b1 Iris fulva EST Library IF1 Iri... 46 2.3 1
(EX951496) IB1_40_H08_A068.b1 Iris brevicaulis EST Library I... 46 2.3 1
(EX950043) IB1_2_D03_A068.b1 Iris brevicaulis EST Library IB... 46 2.3 1
(CU571327) Zebrafish DNA sequence from clone CH73-356B5 in l... 36 3.1 4
(AC168430) Strongylocentrotus purpuratus clone R3-39J9, WORK... 36 7.1 4
(BZ047394) lkf49e05.b1 B.oleracea002 Brassica oleracea genom... 32 8.9 3
(AY653733) Acanthamoeba polyphaga mimivirus, complete genome. 44 9.1 1
(AY553191) Aegilops geniculata clone Dta1 amplified polymorp... 44 9.1 1
(EU108987) Rhagoletis cornivora isolate 21 locus P2956 genom... 44 9.1 1
(EU108986) Rhagoletis cornivora isolate 10 locus P2956 genom... 44 9.1 1
(EU108985) Rhagoletis cornivora isolate 7 locus P2956 genomi... 44 9.1 1
(EU108984) Rhagoletis cornivora isolate 6 locus P2956 genomi... 44 9.1 1
(EU108983) Rhagoletis cornivora isolate 5 locus P2956 genomi... 44 9.1 1
(EU108982) Rhagoletis cornivora isolate 3 locus P2956 genomi... 44 9.1 1
(EU108981) Rhagoletis cornivora isolate 2 locus P2956 genomi... 44 9.1 1
(EU108980) Rhagoletis mendax isolate MI8 locus P2956 genomic... 44 9.1 1
(EU108979) Rhagoletis mendax isolate MI7 locus P2956 genomic... 44 9.1 1
(DQ812803) Rhagoletis pomonella isolate SJ9 locus P2956 geno... 44 9.1 1
(DQ812802) Rhagoletis pomonella isolate PL10 locus P2956 gen... 44 9.1 1
(DQ812794) Rhagoletis pomonella isolate CB11 locus P2956 gen... 44 9.1 1
(DQ812790) Rhagoletis pomonella isolate CB2 locus P2956 geno... 44 9.1 1
(AY930892) Rhagoletis electromorpha isolate Relect2 locus P2... 44 9.1 1
(AY930891) Rhagoletis electromorpha isolate Relect11 locus P... 44 9.1 1
(AY930888) Rhagoletis pomonella isolate TXH1 locus P2956 gen... 44 9.1 1
(AY930887) Rhagoletis pomonella isolate MIAp109M10 locus P29... 44 9.1 1
(AY930886) Rhagoletis pomonella isolate MIAp29D5 locus P2956... 44 9.1 1
(AY930879) Rhagoletis pomonella isolate MIAp105d5 locus P295... 44 9.1 1
(AY930875) Rhagoletis pomonella isolate MIAp45M12 locus P295... 44 9.1 1
(AY930873) Rhagoletis pomonella isolate NYH11 locus P2956 ge... 44 9.1 1
(AY930872) Rhagoletis pomonella isolate NYH9 locus P2956 gen... 44 9.1 1
(AY930871) Rhagoletis pomonella isolate NYH4 locus P2956 gen... 44 9.1 1
(AY152524) Rhagoletis electra isolate R.elect11 locus P2956,... 44 9.1 1
(AY152521) Rhagoletis pomonella isolate MexHiH17_1_11 locus ... 44 9.1 1
(AY152520) Rhagoletis pomonella isolate MexHiH17_1_9 locus P... 44 9.1 1
(AY152519) Rhagoletis pomonella isolate MexHi1_8 locus P2956... 44 9.1 1
(AY152512) Rhagoletis pomonella isolate PomNYH11 locus P2956... 44 9.1 1
(AC098791) Homo sapiens chromosome 19 clone LLNLR-277H9, com... 44 9.1 1
(AC093944) Rattus norvegicus clone CH230-43I11, *** SEQUENCI... 44 9.1 1
(AC226769) Homo sapiens chromosome UNKNOWN clone ABC9-439593... 44 9.1 1
(AC223035) Bos taurus clone CH240-431K13, WORKING DRAFT SEQU... 44 9.1 1
(AC188783) Glycine max clone gmp1-118c24, WORKING DRAFT SEQU... 44 9.1 1
(EK490204) 1095505015049 Global-Ocean-Sampling_GS-32-01-01-1... 44 9.1 1
(EK489621) 1095505008649 Global-Ocean-Sampling_GS-32-01-01-1... 44 9.1 1
(EI363182) GM_WBc0117H21.r GM_WBc Glycine max genomic clone ... 44 9.1 1
(EI323538) GM_WBc0059N07.r GM_WBc Glycine max genomic clone ... 44 9.1 1
(ED793412) GM_WBb0177J11.r GM_WBb Glycine max genomic clone ... 44 9.1 1
(ED636360) GM_WBa0043G18.r GM_WBa Glycine max genomic clone ... 44 9.1 1
(DX413691) SOYC333TH LargeInsertSoybeanGenLibBuild4 Glycine ... 44 9.1 1
(CZ501111) GMW2-23N17a.g1 GMW2 Glycine max genomic, genomic ... 44 9.1 1
(CC492494) CH240_326N7.T7 CHORI-240 Bos taurus genomic clone... 44 9.1 1
(AV519332) Arabidopsis thaliana cDNA clone:APD55e12F, 3' end. 44 9.1 1
(AV091679) Mus musculus adult male tongue cDNA, partial sequ... 44 9.1 1
(BI450434) kt25e11.y3 Strongyloides ratti L1 pAMP1 v3 Chiape... 44 9.1 1
(FC815711) Sr_pAMT7_03o22_T7 S. ratti mixed stage pAMP Stron... 44 9.1 1

>(BJ430402) Dictyostelium discoideum cDNA clone:ddv7k03, 3' end,
single read.
Length = 781

Score = 1271 bits (641), Expect(2) = 0.0
Identities = 647/648 (99%)
Strand = Plus / Minus


Query: 265 aaatgcaactggtagaccaatgttcttttcactctgtgattggggttatgagaatccttg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 aaatgcaactggtagaccaatgttcttttcactctgtgattggggttatgagaatccttg 590


Query: 325 gacttttggtatgagtgtcggcaactcttggagaactacaccagatattaaagacaattg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gacttttggtatgagtgtcggcaactcttggagaactacaccagatattaaagacaattg 530


Query: 385 ggacagcatgctctccaaccttatggcacaagcaccaatcacctccttctcgggtatcgg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ggacagcatgctctccaaccttatggcacaagcaccaatcacctccttctcgggtatcgg 470


Query: 445 tggtttcaacgaccctgacatgatgatggttggcaatggtggtatgtccaacacagagta 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tggtttcaacgaccctgacatgatgatggttggcaatggtggtatgtccaacacagagta 410


Query: 505 cgtgtcacacttttccttatggtccttattgaatgccccactcattgcaggatgtgactt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 cgtgtcacacttttccttatggtccttattgaatgccccactcattgcaggatgtgactt 350


Query: 565 gattgatattgatcaagagacattatcaattttaacagcctctgaagtcattgcaattaa 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gattgatattgatcaagagacattatcaattttaacagcctctgaagtcattgcaattaa 290


Query: 625 tcaagatccattaggtgtacaaggatcattggttaaatcatataatggtggtttacaaca 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tcaagatccattaggtgtacaaggatcattggttaaatcatataatggtggtttacaaca 230


Query: 685 aatttgggctaaacctttatcaaatggtgctagagctgtagttttattcaataccgatac 744
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 aatttgagctaaacctttatcaaatggtgctagagctgtagttttattcaataccgatac 170


Query: 745 taatccagccactattgaattattatggggcaatatttggatggagccatctcaacaatt 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 taatccagccactattgaattattatggggcaatatttggatggagccatctcaacaatt 110


Query: 805 atcaattagaaatttatggactcaaacaaatcttggaacttttactgaatcttagaaagn 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 atcaattagaaatttatggactcaaacaaatcttggaacttttactgaatcttagaaagn 50


Query: 865 attctttaattccaccacaggtgtattatgttaacttaacaccaacaa 912
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 attctttaattccaccacaggtgtattatgttaacttaacaccaacaa 2

Score = 268 bits (135), Expect(2) = 0.0
Identities = 135/135 (100%)
Strand = Plus / Minus


Query: 132 tggtagttatggatatgaagctaatgacgcacaaacttacgcagaatggggtattgatta 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tggtagttatggatatgaagctaatgacgcacaaacttacgcagaatggggtattgatta 722


Query: 192 tgttaaggaagattggtgttatgctacattggagaatccacaacaacgttatcaaattat 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tgttaaggaagattggtgttatgctacattggagaatccacaacaacgttatcaaattat 662


Query: 252 gtcacaagcattaaa 266
|||||||||||||||
Sbjct: 661 gtcacaagcattaaa 647

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 881,689,163
Number of extensions: 47157824
Number of successful extensions: 3438773
Number of sequences better than 10.0: 83
Length of query: 912
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 888
Effective length of database: 97,308,875,965
Effective search space: 86410281856920
Effective search space used: 86410281856920
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.26
Homology vs Protein
Query= Contig-U09528-1 (Contig-U09528-1Q) /CSM_Contig/Contig-U09528-1Q.Seq.d
(912 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

T10860(T10860) alpha-galactosidase (EC 3.2.1.22) - kidney bean ... 198 5e-58
AJ877911_1(AJ877911|pid:none) Coffea arabica mRNA for alpha gala... 193 2e-57
(Q9FXT4) RecName: Full=Alpha-galactosidase; EC=3.2.1.22... 201 9e-57
AP008216_933(AP008216|pid:none) Oryza sativa (japonica cultivar-... 201 9e-57
AJ877912_1(AJ877912|pid:none) Coffea canephora mRNA for alpha-ga... 193 9e-57
EF085713_1(EF085713|pid:none) Picea sitchensis clone WS0294_N01 ... 195 1e-56
AF289080_1(AF289080|pid:none) Lycopersicon esculentum alpha-gala... 189 3e-56
(P14749) RecName: Full=Alpha-galactosidase; EC=3.2.1.22... 196 1e-55
A12675_1(A12675|pid:none) guar alpha galactosidase cDNA. 196 1e-55
AP005737_4(AP005737|pid:none) Oryza sativa Japonica Group genomi... 194 3e-55
AP008213_881(AP008213|pid:none) Oryza sativa (japonica cultivar-... 194 3e-55
BT033908_1(BT033908|pid:none) Zea mays full-length cDNA clone ZM... 188 8e-54
EU954969_1(EU954969|pid:none) Zea mays clone 1496122 alpha-galac... 188 8e-54
AY074321_1(AY074321|pid:none) Arabidopsis thaliana putative alph... 192 1e-53
AL163763_27(AL163763|pid:none) Arabidopsis thaliana DNA chromoso... 192 1e-53
AY738151_1(AY738151|pid:none) Salvia miltiorrhiza glycosyl hydro... 190 2e-53
AY085529_1(AY085529|pid:none) Arabidopsis thaliana clone 156141 ... 180 2e-53
AK317201_1(AK317201|pid:none) Arabidopsis thaliana AT5G08370 mRN... 180 2e-53
AL392174_10(AL392174|pid:none) Arabidopsis thaliana DNA chromoso... 180 2e-53
AM429836_1(AM429836|pid:none) Vitis vinifera contig VV78X092589.... 180 1e-52
AJ630105_1(AJ630105|pid:none) Pisum sativum mRNA for alpha-galac... 177 3e-52
CP000927_2119(CP000927|pid:none) Caulobacter sp. K31, complete g... 172 3e-52
CP000360_1673(CP000360|pid:none) Acidobacteria bacterium Ellin34... 182 6e-52
AL392174_11(AL392174|pid:none) Arabidopsis thaliana DNA chromoso... 170 6e-51
AY093200_1(AY093200|pid:none) Arabidopsis thaliana alpha-galacto... 170 6e-51
AC023240_4(AC023240|pid:none) Oryza sativa chromosome 10 BAC OSJ... 175 2e-50
AY374437_1(AY374437|pid:none) Petunia x hybrida alpha-galactosid... 170 4e-50
BT033680_1(BT033680|pid:none) Zea mays full-length cDNA clone ZM... 176 5e-50
AL939104_273(AL939104|pid:none) Streptomyces coelicolor A3(2) co... 174 7e-49
AC153004_15(AC153004|pid:none) Medicago truncatula clone mth2-10... 168 1e-48
AB025362_1(AB025362|pid:none) Clostridium josui agaA gene for al... 169 1e-48
CP001472_48(CP001472|pid:none) Acidobacterium capsulatum ATCC 51... 174 2e-48
AY253299_1(AY253299|pid:none) Carica papaya alpha-galactosidase ... 162 2e-48
BA000030_1480(BA000030|pid:none) Streptomyces avermitilis MA-468... 171 4e-48
CP001348_1561(CP001348|pid:none) Clostridium cellulolyticum H10,... 163 1e-46
CP001348_1205(CP001348|pid:none) Clostridium cellulolyticum H10,... 158 2e-43
CP000282_1591(CP000282|pid:none) Saccharophagus degradans 2-40, ... 143 5e-42
CP000473_690(CP000473|pid:none) Solibacter usitatus Ellin6076, c... 140 8e-42
AY526725_4(AY526725|pid:none) Cellvibrio mixtus Unk1 (unk1), Unk... 135 7e-40
CP000875_3874(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 135 1e-38
CR626927_4081(CR626927|pid:none) Bacteroides fragilis NCTC 9343,... 135 2e-38
AE015928_3064(AE015928|pid:none) Bacteroides thetaiotaomicron VP... 133 5e-38
CP000685_4908(CP000685|pid:none) Flavobacterium johnsoniae UW101... 131 2e-36
BA000030_632(BA000030|pid:none) Streptomyces avermitilis MA-4680... 155 2e-36
AP006841_1487(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,... 127 3e-36
CR626927_1347(CR626927|pid:none) Bacteroides fragilis NCTC 9343,... 127 3e-36
CP001504_1906(CP001504|pid:none) Burkholderia glumae BGR1 chromo... 142 4e-36
EU961965_1(EU961965|pid:none) Zea mays clone 239357 unknown mRNA. 153 9e-36
AF246262_1(AF246262|pid:none) Phanerochaete chrysosporium alpha-... 145 2e-33
BA000030_2193(BA000030|pid:none) Streptomyces avermitilis MA-468... 132 2e-33
AB018691_1(AB018691|pid:none) Mortierella vinacea mRNA for alpha... 144 5e-33
EF677985_1(EF677985|pid:none) Picea sitchensis clone WS02815_N10... 142 2e-32
AF246263_1(AF246263|pid:none) Phanerochaete chrysosporium alpha-... 142 2e-32
AM420293_3062(AM420293|pid:none) Saccharopolyspora erythraea NRR... 112 5e-32
AE015928_3590(AE015928|pid:none) Bacteroides thetaiotaomicron VP... 118 8e-31
AP007157_136(AP007157|pid:none) Aspergillus oryzae RIB40 genomic... 120 2e-30
(P06280) RecName: Full=Alpha-galactosidase A; EC=3.2.1.... 106 5e-30
AX840234_1(AX840234|pid:none) Sequence 8 from Patent WO03073839. 106 5e-30
AY892090_1(AY892090|pid:none) Synthetic construct Homo sapiens c... 106 5e-30
(Q99172) RecName: Full=Alpha-galactosidase; EC=3.2.1.22... 133 7e-30
BC106337_1(BC106337|pid:none) Xenopus laevis hypothetical protei... 107 4e-29
AB037407_1(AB037407|pid:none) Saccharomyces kluyveri MELk2 gene ... 130 8e-29
AP006841_271(AP006841|pid:none) Bacteroides fragilis YCH46 DNA, ... 109 1e-27
(Q9URZ0) RecName: Full=Probable alpha-galactosidase; EC... 106 2e-27
AB038520_1(AB038520|pid:none) Saccharomyces kluyveri MELk4 gene ... 125 3e-27
(Q11129) RecName: Full=Alpha-galactosidase; EC=3.2.1.22... 122 1e-26
AK040081_1(AK040081|pid:none) Mus musculus 0 day neonate thymus ... 104 2e-26
CP000927_312(CP000927|pid:none) Caulobacter sp. K31, complete ge... 121 3e-26
AE015928_2662(AE015928|pid:none) Bacteroides thetaiotaomicron VP... 103 3e-26
AK166204_1(AK166204|pid:none) Mus musculus mammary gland RCB-052... 104 3e-26
AK145148_1(AK145148|pid:none) Mus musculus mammary gland RCB-052... 104 3e-26
AP009380_2031(AP009380|pid:none) Porphyromonas gingivalis ATCC 3... 97 5e-26
(Q09187) RecName: Full=Alpha-galactosidase; EC=3.2.1.22... 120 6e-26
(P41947) RecName: Full=Alpha-galactosidase 6; EC=3.2.1.... 120 8e-26
AB475106_1(AB475106|pid:none) Fusarium oxysporum Foap2 mRNA for ... 104 9e-26
AB257564_1(AB257564|pid:none) Lachancea thermotolerans MELth2 ge... 119 1e-25
AF412041_1(AF412041|pid:none) Saccharomyces cerevisiae alpha-gal... 119 1e-25
AB257563_1(AB257563|pid:none) Lachancea thermotolerans MELth1 ge... 119 1e-25
(Q03647) RecName: Full=Alpha-galactosidase; EC=3.2.1.22... 119 2e-25
AE015924_75(AE015924|pid:none) Porphyromonas gingivalis W83, com... 95 3e-25
AF251064_1(AF251064|pid:none) Oryza sativa alpha-galactosidase m... 96 3e-25
AB183020_1(AB183020|pid:none) Saccharomyces kluyveri MELk gene f... 118 3e-25
AB037406_1(AB037406|pid:none) Saccharomyces kluyveri MELk1 gene ... 118 3e-25
AB183019_1(AB183019|pid:none) Saccharomyces kluyveri MELk gene f... 118 3e-25
BT082350_1(BT082350|pid:none) Anoplopoma fimbria clone afim-evh-... 99 3e-25
CP000139_618(CP000139|pid:none) Bacteroides vulgatus ATCC 8482, ... 100 4e-25
AB037408_1(AB037408|pid:none) Saccharomyces kluyveri MELk3 gene ... 117 5e-25
(P41945) RecName: Full=Alpha-galactosidase 2; EC=3.2.1.... 115 2e-24
CP001071_1165(CP001071|pid:none) Akkermansia muciniphila ATCC BA... 104 2e-24
AE015928_4155(AE015928|pid:none) Bacteroides thetaiotaomicron VP... 102 1e-23
(Q9UVD6) RecName: Full=Alpha-galactosidase; EC=3.2.1.22... 112 1e-23
EU106878_1(EU106878|pid:none) Talaromyces emersonii alpha-galact... 112 1e-23
FN314309_1(FN314309|pid:none) Schistosoma japonicum isolate Anhu... 94 5e-23
AP008216_929(AP008216|pid:none) Oryza sativa (japonica cultivar-... 84 7e-23
CP000927_2401(CP000927|pid:none) Caulobacter sp. K31, complete g... 110 8e-23
AP007155_1128(AP007155|pid:none) Aspergillus oryzae RIB40 genomi... 108 2e-22
(Q90744) RecName: Full=Alpha-N-acetylgalactosaminidase; ... 107 7e-22
Z99716_17(Z99716|pid:none) Human DNA sequence from clone CTA-250... 107 7e-22
T04422(T04422) alpha-galactosidase (EC 3.2.1.22) - barley (fragm... 106 9e-22
EU442573_1(EU442573|pid:none) Sus scrofa N-acetylgalactosaminida... 105 2e-21
EU579460_1(EU579460|pid:none) Ovis aries N-acetylgalactosaminida... 105 2e-21
AJ223966_1(AJ223966|pid:none) Mus musculus NAGA gene. 105 2e-21
(Q9QWR8) RecName: Full=Alpha-N-acetylgalactosaminidase; ... 105 2e-21
AB475107_1(AB475107|pid:none) Fusarium oxysporum Foap1 mRNA for ... 97 2e-21
BA000030_1082(BA000030|pid:none) Streptomyces avermitilis MA-468... 105 2e-21
BC114813_1(BC114813|pid:none) Bos taurus N-acetylgalactosaminida... 105 2e-21
(Q66H12) RecName: Full=Alpha-N-acetylgalactosaminidase; ... 105 2e-21
CT573213_3923(CT573213|pid:none) Frankia alni str. ACN14A chromo... 86 3e-21
T24018(T24018) hypothetical protein R07B7.11 - Caenorhabditis el... 87 6e-21
BC021631_1(BC021631|pid:none) Mus musculus N-acetyl galactosamin... 103 6e-21
BC154863_1(BC154863|pid:none) Xenopus tropicalis N-acetylgalacto... 103 8e-21
AM270241_24(AM270241|pid:none) Aspergillus niger contig An11c024... 103 1e-20
AJ290422_2(AJ290422|pid:none) Fugu rubripes gra2 gene (partial),... 102 1e-20
Y18586_1(Y18586|pid:none) Aspergillus niger aglB gene. 102 1e-20
FN359186_2(FN359186|pid:none) Schistosoma mansoni genome sequenc... 89 4e-20
AJ009956_1(AJ009956|pid:none) Penicillium simplicissimum mRNA fo... 100 5e-20
DQ311273_1(DQ311273|pid:none) Bombyx mori alpha-N-acetylgalactos... 87 1e-19
CU633870_40(CU633870|pid:none) Podospora anserina genomic DNA ch... 85 4e-19
FJ843023_1(FJ843023|pid:none) Aspergillus fumigatus strain IMI 3... 98 4e-19
Z99716_16(Z99716|pid:none) Human DNA sequence from clone CTA-250... 94 8e-18
BT077336_1(BT077336|pid:none) Lepeophtheirus salmonis clone lsal... 81 3e-17
AB037976_1(AB037976|pid:none) Acremonium sp. No.413 nagA mRNA fo... 88 5e-16
AE013599_2386(AE013599|pid:none) Drosophila melanogaster chromos... 86 2e-15
AE015928_65(AE015928|pid:none) Bacteroides thetaiotaomicron VPI-... 85 4e-15
CP001472_1509(CP001472|pid:none) Acidobacterium capsulatum ATCC ... 71 9e-13
AM270108_9(AM270108|pid:none) Aspergillus niger contig An06c0020... 75 4e-12
CP000360_3245(CP000360|pid:none) Acidobacteria bacterium Ellin34... 57 1e-10
FN357709_3(FN357709|pid:none) Schistosoma mansoni genome sequenc... 68 5e-10
CP001032_1356(CP001032|pid:none) Opitutus terrae PB90-1, complet... 59 2e-08
AK067743_1(AK067743|pid:none) Oryza sativa Japonica Group cDNA c... 49 1e-07
BT065333_1(BT065333|pid:none) Zea mays full-length cDNA clone ZM... 48 3e-07
EF678224_1(EF678224|pid:none) Picea sitchensis clone WS0285_J03 ... 51 5e-07
CP000473_1448(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 53 5e-07
CP001618_53(CP001618|pid:none) Beutenbergia cavernae DSM 12333, ... 51 5e-07
FJ374538_1(FJ374538|pid:none) Secale cereale putative alpha-gala... 45 3e-06
FJ374535_1(FJ374535|pid:none) Triticum urartu putative alpha-gal... 45 3e-06
CP000750_3435(CP000750|pid:none) Kineococcus radiotolerans SRS30... 51 5e-05
EF676204_1(EF676204|pid:none) Picea sitchensis clone WS02719_G07... 51 6e-05
AP009256_1525(AP009256|pid:none) Bifidobacterium adolescentis AT... 46 5e-04
BC108078_1(BC108078|pid:none) Danio rerio zgc:123333, mRNA (cDNA... 45 0.003
AC139707_24(AC139707|pid:none) Medicago truncatula clone mth2-16... 44 0.006
AK297148_1(AK297148|pid:none) Homo sapiens cDNA FLJ56739 complet... 43 0.013
BT045564_1(BT045564|pid:none) Salmo salar clone ssal-rgf-524-383... 42 0.028
CP001344_4657(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 42 0.028
FN314308_1(FN314308|pid:none) Schistosoma japonicum isolate Anhu... 38 0.41
BT084046_1(BT084046|pid:none) Zea mays full-length cDNA clone ZM... 37 0.91
CP000605_1537(CP000605|pid:none) Bifidobacterium longum DJO10A, ... 37 1.2
AB244722_1(AB244722|pid:none) Sphingobacterium sp. V-54 dex1, hb... 35 3.5
AY037892_1(AY037892|pid:none) Phytophthora cinnamomi pyruvate ph... 35 3.5
AY037892_2(AY037892|pid:none) Phytophthora cinnamomi pyruvate ph... 35 3.5
AY037893_1(AY037893|pid:none) Phytophthora cinnamomi pyruvate ph... 35 3.5
CP000504_1351(CP000504|pid:none) Pyrobaculum islandicum DSM 4184... 35 3.5
AC137077_24(AC137077|pid:none) Medicago truncatula clone mth2-8g... 35 3.5
CP001074_1124(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 35 4.5
AY809794_1(AY809794|pid:none) Schistosoma japonicum SJCHGC03011 ... 34 6.0
CP000744_4763(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 34 7.7
CP000493_958(CP000493|pid:none) Hyperthermus butylicus DSM 5456,... 34 7.7

>T10860(T10860) alpha-galactosidase (EC 3.2.1.22) - kidney bean
&U12927_1(U12927|pid:none)
Length = 425

Score = 198 bits (504), Expect(2) = 5e-58
Identities = 93/184 (50%), Positives = 127/184 (69%)
Frame = +2

Query: 272 TGRPMFFSLCDWGYENPWTFGMSVGNSWRTTPDIKDNWDSMLSNLMAQAPITSFSGIGGF 451
+GRP+FFSLC+WG E+P T+ SVGNSWRTT DI+D W+SM+S S++G GG+
Sbjct: 215 SGRPIFFSLCEWGSEDPATWAKSVGNSWRTTGDIEDKWESMISRADLNDEWASYAGPGGW 274

Query: 452 NDPDMMMVGNGGMSNTEYVSHFSLWSLLNAPLIAGCDLIDIDQETLSILTASEVIAINQD 631
NDPDM+ VGNGGM+ EY +HFS+W+L APL+ GCD+ +D T +L+ EVIA+NQD
Sbjct: 275 NDPDMLEVGNGGMTTEEYRAHFSIWALAKAPLLIGCDIRALDVTTKELLSNEEVIAVNQD 334

Query: 632 PLGVQGSLVKSYNGGLQQIWAKPLSNGARAVVLFNTDTNPATIELLWGNIWMEPSQQLSI 811
LGVQG VKS N ++WA PLSN AV+L+N ++ A + W +I ++P +
Sbjct: 335 KLGVQGKKVKSNND--LEVWAGPLSNNRLAVILWNRSSSKAKVTASWSDIGLKPGTLVDA 392

Query: 812 RNLW 823
R+LW
Sbjct: 393 RDLW 396

Score = 50.4 bits (119), Expect(2) = 5e-58
Identities = 23/44 (52%), Positives = 31/44 (70%)
Frame = +1

Query: 133 GSYGYEANDAQTYAEWGIDYVKEDWCYATLENPQQRYQIMSQAL 264
GS G+E DA+T+A WGIDY+K D C +P++RY MS+AL
Sbjct: 169 GSLGHEEQDAKTFASWGIDYLKYDNCENKNISPKERYPPMSKAL 212

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,549,361,045
Number of extensions: 33266393
Number of successful extensions: 80191
Number of sequences better than 10.0: 157
Number of HSP's gapped: 79944
Number of HSP's successfully gapped: 290
Length of query: 304
Length of database: 1,040,966,779
Length adjustment: 128
Effective length of query: 176
Effective length of database: 630,818,299
Effective search space: 111024020624
Effective search space used: 111024020624
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.94 gvh: 0.65 alm: 0.65 top: -0.13 tms: 0.00 mit: 0.42 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: extracellular, including cell wall
24.0 %: cytoplasmic
12.0 %: nuclear
12.0 %: endoplasmic reticulum
8.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for Contig-U09528-1 is exc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 5
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0