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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U09512-1
Contig ID Contig-U09512-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U09512-1 (Contig-U09512-1Q) /CSM_Contig/Contig-U09512-1Q.Seq.d
AATTAGCAAAAAAAATGGATAAAGAAAATCAAATAATTAGATCAGTTTGG
GGAAATAAATATATAAGAGATTTAATTTTTTTTTATCTTAATTTGTATAA
TAATAATAAGGTGGTTCACATTTAGAAGCTGGTGATTTACCTTCAAGTAT
AAGATATTTGGAATTTTTTGGTAGTTATAATCCAATTTTACAAGAAAATT
CTTTACCAGATTCGTTGATTAGTGTAATTTTTAATAGGAGATTTAATCAA
CAATTAAATAATAAAATTATTAAAAATGGTATAAAAAGCATTGAATTCAC
TGGAATATTTAATCAGTCATTGGGGG----------CTTTGGTTCCCCTC
TTAGTGGTGATCCATATCATTTCTTTTTTTATGTAACTAATTTAAATGAA
TGTTATTCTTTAACAAATTTGGAATTAGGTAGAAGAGATAACCCAAATCT
AGAAAAAATTATTTTCCCCAACTCTTTATCTTTAACAACTTTAAATTTGG
GTGGATATAAAGGGAATCAATTATCAAAAATACCATCATCAGTAACAAAT
TTAAATTTAGGATATTATTACAATTTTCCAATTGAAGAGAATTCTTTACC
TAAAAATCTTAAATCACTTAATTTTGGTGAATCTTTTGATAAACCAATTA
ATTCTAATCTACTTCCAAAAACTTTAAGAATAATTTATTTCCAATGTCCA
ACTTTTAATCAAAATATTTATGAATTACCAAATCAATTACCATTATTAAA
AACAATATATTTATCTTCAAAAAATATTAGTTTTATAAATACTTTAGATA
CTTCCTTTTATTCAAAATATATTAGGGTTACTGATGAACAATAATTAAAA
TTAATTGTTCTTCCCTTAAATTTAAATAAATAAATAAAAAAATGTTTAAA
AATAAAAAATAAAA
Gap gap included
Contig length 904
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 6091168
End point 6090263
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U09512
List of clone(s) 

est1=SSM381F,1,327
est2=SSM381Z,328,906
Translated Amino Acid sequence 
iskkng*rksnn*islgk*iykrfnffls*fv****GGSHLEAGDLPSSIRYLEFFGSYN
PILQENSLPDSLISVIFNRRFNQQLNNKIIKNGIKSIEFTGIFNQSLG---

---FGSPLSGDPYHFFFYVTNLNECYSLTNLELGRRDNPNLEKIIFPNSLSLTTLNLGGY
KGNQLSKIPSSVTNLNLGYYYNFPIEENSLPKNLKSLNFGESFDKPINSNLLPKTLRIIY
FQCPTFNQNIYELPNQLPLLKTIYLSSKNISFINTLDTSFYSKYIRVTDEQ*lklivlpl
nlnk*ikkclkiknk
Translated Amino Acid sequence (All Frames) 
Frame A:
n*qkkwikkik*ldqfgeini*ei*fffiliciiiirwftfrsw*ftfkykifgifw*l*
snftrkfftrfvd*cnf**ei*stik**ny*kwykkh*ihwni*svig---

---lwfps*w*sisflflcn*fk*mlffnkfgir*kr*pksrknyfpqlfifnnfkfgwi
*resiikntiisnkfkfrillqfsn*refft*ks*it*fw*if**tn*f*stsknfknnl
fpmsnf*skyl*itksitiiknnififkky*fykyfryfllfkiy*gy**tiikincssl
kfk*inkkmfknkk*

Frame B:
iskkng*rksnn*islgk*iykrfnffls*fv****GGSHLEAGDLPSSIRYLEFFGSYN
PILQENSLPDSLISVIFNRRFNQQLNNKIIKNGIKSIEFTGIFNQSLG---

---FGSPLSGDPYHFFFYVTNLNECYSLTNLELGRRDNPNLEKIIFPNSLSLTTLNLGGY
KGNQLSKIPSSVTNLNLGYYYNFPIEENSLPKNLKSLNFGESFDKPINSNLLPKTLRIIY
FQCPTFNQNIYELPNQLPLLKTIYLSSKNISFINTLDTSFYSKYIRVTDEQ*lklivlpl
nlnk*ikkclkiknk

Frame C:
lakkmdkenqiirsvwgnkyirdliffylnlynnnkvvhi*klviylqv*diwnflvvii
qfykkilyqir*lv*fligdlinn*iikllkmv*kalnsleylishwg---

---lvpllvvihiisffm*li*mnvil*qiwn*veeitqi*kklfsptlyl*ql*iwvdi
kginyqkyhhq*qi*i*diitifqlkrilylkilnhlilvnllinqliliyfqkl*e*fi
snvqllikifmnyqinyhy*kqyiylqkilvl*il*ilpfiqnilgllmnnn*n*lffp*
i*ink*knv*k*kik
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U09512-1 (Contig-U09512-1Q)
/CSM_Contig/Contig-U09512-1Q.Seq.d
         (914 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09512-1 (Contig-U09512-1Q) /CSM_Contig/Conti...  1477  0.0
Contig-U12453-1 (Contig-U12453-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U12416-1 (Contig-U12416-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U13955-1 (Contig-U13955-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U09400-1 (Contig-U09400-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U01890-1 (Contig-U01890-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U12425-1 (Contig-U12425-1Q) /CSM_Contig/Conti...    36  0.064
Contig-U11673-1 (Contig-U11673-1Q) /CSM_Contig/Conti...    36  0.064
Contig-U09546-1 (Contig-U09546-1Q) /CSM_Contig/Conti...    36  0.064
Contig-U13309-1 (Contig-U13309-1Q) /CSM_Contig/Conti...    34  0.25

>Contig-U09512-1 (Contig-U09512-1Q) /CSM_Contig/Contig-U09512-1Q.Seq.d
          Length = 914

 Score = 1477 bits (745), Expect = 0.0
 Identities = 807/823 (98%)
 Strand = Plus / Plus

                                                                       
Query: 16  tggataaagaaaatcaaataattagatcagtttggggaaataaatatataagagatttaa 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16  tggataaagaaaatcaaataattagatcagtttggggaaataaatatataagagatttaa 75

                                                                       
Query: 76  nnnnnnnnnatcttaatttgtataataataataaggtggttcacatttagaagctggtga 135
                    |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  tttttttttatcttaatttgtataataataataaggtggttcacatttagaagctggtga 135

                                                                       
Query: 136 tttaccttcaagtataagatatttggaattttttggtagttataatccaattttacaaga 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 tttaccttcaagtataagatatttggaattttttggtagttataatccaattttacaaga 195

                                                                       
Query: 196 aaattctttaccagattcgttgattagtgtaatttttaataggagatttaatcaacaatt 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 aaattctttaccagattcgttgattagtgtaatttttaataggagatttaatcaacaatt 255

                                                                       
Query: 256 aaataataaaattattaaaaatggtataaaaagcattgaattcactggaatatttaatca 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aaataataaaattattaaaaatggtataaaaagcattgaattcactggaatatttaatca 315

                                                                       
Query: 316 gtcattgggggnnnnnnnnnnctttggttcccctcttagtggtgatccatatcatttcnn 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 316 gtcattgggggnnnnnnnnnnctttggttcccctcttagtggtgatccatatcatttctt 375

                                                                       
Query: 376 nnnnnatgtaactaatttaaatgaatgttattctttaacaaatttggaattaggtagaag 435
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tttttatgtaactaatttaaatgaatgttattctttaacaaatttggaattaggtagaag 435

                                                                       
Query: 436 agataacccaaatctagaaaaaattattttccccaactctttatctttaacaactttaaa 495
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 agataacccaaatctagaaaaaattattttccccaactctttatctttaacaactttaaa 495

                                                                       
Query: 496 tttgggtggatataaagggaatcaattatcaaaaataccatcatcagtaacaaatttaaa 555
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tttgggtggatataaagggaatcaattatcaaaaataccatcatcagtaacaaatttaaa 555

                                                                       
Query: 556 tttaggatattattacaattttccaattgaagagaattctttacctaaaaatcttaaatc 615
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tttaggatattattacaattttccaattgaagagaattctttacctaaaaatcttaaatc 615

                                                                       
Query: 616 acttaattttggtgaatcttttgataaaccaattaattctaatctacttccaaaaacttt 675
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 acttaattttggtgaatcttttgataaaccaattaattctaatctacttccaaaaacttt 675

                                                                       
Query: 676 aagaataatttatttccaatgtccaacttttaatcaaaatatttatgaattaccaaatca 735
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aagaataatttatttccaatgtccaacttttaatcaaaatatttatgaattaccaaatca 735

                                                                       
Query: 736 attaccattattaaaaacaatatatttatcttcaaaaaatattagttttataaatacttt 795
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 attaccattattaaaaacaatatatttatcttcaaaaaatattagttttataaatacttt 795

                                                      
Query: 796 agatacttccttttattcaaaatatattagggttactgatgaa 838
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 agatacttccttttattcaaaatatattagggttactgatgaa 838


>Contig-U12453-1 (Contig-U12453-1Q) /CSM_Contig/Contig-U12453-1Q.Seq.d
          Length = 1034

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 241 atttaatcaacaattaaataataaaattat 270
           |||||||||| ||||||||||| |||||||
Sbjct: 143 atttaatcaaaaattaaataatcaaattat 172


>Contig-U12416-1 (Contig-U12416-1Q) /CSM_Contig/Contig-U12416-1Q.Seq.d
          Length = 1879

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 690 tccaatgtccaacttttaat 709
           ||||||||||||||||||||
Sbjct: 529 tccaatgtccaacttttaat 548


 Score = 40.1 bits (20), Expect = 0.004
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 690 tccaatgtccaacttttaat 709
           ||||||||||||||||||||
Sbjct: 650 tccaatgtccaacttttaat 669


 Score = 34.2 bits (17), Expect = 0.25
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 693 aatgtccaacttttaat 709
           |||||||||||||||||
Sbjct: 773 aatgtccaacttttaat 789


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 34,173
Number of Sequences: 6905
Number of extensions: 34173
Number of successful extensions: 10086
Number of sequences better than 10.0: 367
length of query: 914
length of database: 5,674,871
effective HSP length: 16
effective length of query: 898
effective length of database: 5,564,391
effective search space: 4996823118
effective search space used: 4996823118
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.16
Homology vs DNA 
Query= Contig-U09512-1 (Contig-U09512-1Q) /CSM_Contig/Contig-U09512-1Q.Seq.d
         (914 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC114258) Dictyostelium discoideum chromosome 2 map complem...   910   0.0    6
(AU039098) Dictyostelium discoideum slug cDNA, clone SSM381.      910   0.0    2
(AU074895) Dictyostelium discoideum slug cDNA, clone SSM381.      278   e-99   2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    34   1e-04  11
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    36   2e-04  23
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    44   0.001  9
(AX347077) Sequence 2148 from Patent WO0200928.                    36   0.004  8
(BX548174) Prochlorococcus marinus MED4 complete genome.           34   0.005  20
(EK346640) 1095467550609 Global-Ocean-Sampling_GS-31-01-01-1...    34   0.007  4
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    36   0.012  12
(BD061520) Genome DNA of symbiotic bacteria of aphid.              40   0.013  15
(AR409405) Sequence 1 from patent US 6632935.                      40   0.013  15
(BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum...    40   0.013  15
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         32   0.014  13
(AE014829) Plasmodium falciparum 3D7 chromosome 10 section 1...    38   0.017  10
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ...    34   0.023  11
(AE000783) Borrelia burgdorferi B31, complete genome.              36   0.041  14
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    32   0.055  18
(AC201428) Strongylocentrotus purpuratus clone R3-27A16, WOR...    36   0.057  7
(CU210898) Zebrafish DNA sequence from clone CH73-134F24 in ...    38   0.075  6
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   0.10   12
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2...    36   0.12   8
(CP000087) Rickettsia bellii RML369-C, complete genome.            34   0.13   19
(EK049381) 1092959676916 Global-Ocean-Sampling_GS-31-01-01-1...    50   0.15   1
(AM180355) Clostridium difficile 630 complete genome.              38   0.16   20
(AC006279) Plasmodium falciparum chromosome 12 clone 3D7, **...    32   0.18   13
(CP000361) Arcobacter butzleri RM4018, complete genome.            36   0.18   16
(CR548612) Paramecium tetraurelia macronuclear largest chrom...    36   0.20   18
(BX296551) Zebrafish DNA sequence from clone CH211-224L10 in...    36   0.21   6
(DE568085) Bombyx mori genomic DNA, Fosmid clone:GBMFno212_b...    34   0.25   3
(AL954771) Zebrafish DNA sequence from clone CH211-220B15 in...    40   0.25   8
(AC160300) Bos taurus clone CH240-86A14, WORKING DRAFT SEQUE...    40   0.29   5
(CU695206) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.31   8
(EH017059) USDA-FP_182550 Lysiphlebus testaceipes adult whol...    46   0.40   2
(AC202575) Medicago truncatula clone mth2-167d3, WORKING DRA...    30   0.46   9
(CT009750) Medicago truncatula chromosome 5 clone mth2-46a17...    36   0.46   8
(AX344565) Sequence 16 from Patent WO0200932.                      32   0.47   13
(CS468864) Sequence 55 from Patent EP1748080.                      36   0.48   11
(CS419341) Sequence 55 from Patent WO2006094836.                   36   0.48   11
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    32   0.48   16
(CP000552) Prochlorococcus marinus str. MIT 9515, complete g...    34   0.51   19
(AX344560) Sequence 11 from Patent WO0200932.                      36   0.52   12
(AX344558) Sequence 9 from Patent WO0200932.                       34   0.52   11
(AC004141) Homo sapiens PAC clone RP5-1110N13 from 7, comple...    42   0.57   4
(BX088554) Zebrafish DNA sequence from clone DKEYP-4F12 in l...    48   0.59   1
(AC084475) Caenorhabditis briggsae cosmid G01C7, complete se...    48   0.59   1
(EE095550) S8B02139 Fruits Veraison (VvS8) Vitis vinifera cD...    48   0.59   1
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7...    32   0.62   13
(AL049184) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    34   0.73   11
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s...    32   0.77   13
(AE017245) Mycoplasma synoviae 53, complete genome.                36   0.84   16
(AC179328) Strongylocentrotus purpuratus clone R3-1102L8, WO...    34   0.85   6
(AC199015) Pongo abelii BAC clone CH276-223J8 from chromosom...    40   0.88   4
(EK238013) 1095460210396 Global-Ocean-Sampling_GS-31-01-01-1...    30   0.94   4
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   0.95   10
(AM434738) Vitis vinifera contig VV78X105952.4, whole genome...    38   0.96   3
(CR954246) Pseudoalteromonas haloplanktis str. TAC125 chromo...    36   1.0    2
(CP000312) Clostridium perfringens SM101, complete genome.         34   1.0    19
(CR854953) Zebrafish DNA sequence from clone DKEY-14G24 in l...    34   1.0    6
(AC209141) Saimiri boliviensis boliviensis clone CH254-52K14...    42   1.1    8
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    40   1.1    17
(AX392734) Sequence 24 from Patent WO0212526.                      38   1.2    6
(AR707081) Sequence 24 from patent US 6933145.                     38   1.2    6
(AL844509) Plasmodium falciparum chromosome 13.                    38   1.2    12
(BX248090) Zebrafish DNA sequence from clone DKEY-156K12 in ...    32   1.2    2
(AC135210) Danio rerio strain Tue clone CH211-172N10, WORKIN...    32   1.2    2
(AC202314) Medicago truncatula clone mth2-144e14, WORKING DR...    36   1.2    2
(AC161309) Loxodonta africana clone VMRC15-154H12, WORKING D...    32   1.2    2
(AC161317) Loxodonta africana clone VMRC15-432J14, WORKING D...    32   1.2    2
(CU633473) M.truncatula DNA sequence from clone MTH2-75F6 on...    36   1.2    2
(CS468863) Sequence 54 from Patent EP1748080.                      36   1.3    11
(CS419340) Sequence 54 from Patent WO2006094836.                   36   1.3    11
(CR382399) Plasmodium falciparum chromosome 6, complete sequ...    34   1.4    11
(AX344551) Sequence 2 from Patent WO0200932.                       40   1.4    11
(BH992434) oeh38d07.g1 B.oleracea002 Brassica oleracea genom...    30   1.5    4
(AC170582) Medicago truncatula chromosome 7 BAC clone mth2-5...    44   1.6    5
(AZ676442) ENTML37TR Entamoeba histolytica Sheared DNA Entam...    32   1.6    2
(BH975813) odg63e11.g1 B.oleracea002 Brassica oleracea genom...    38   1.6    2
(AY184995) Dictyostelium discoideum inositol 5-phosphatase 4...    38   1.6    2
(AJ003222) Borrelia burgdorferi flgK, flbF, thdF, gidA, gidB...    36   1.7    3
(AC005140) Plasmodium falciparum chromosome 12 clone 3D7, **...    34   1.7    11
(AC117461) Homo sapiens 3 BAC RP11-346H19 (Roswell Park Canc...    36   1.7    5
(AY653733) Acanthamoeba polyphaga mimivirus, complete genome.      34   1.7    19
(AL844507) Plasmodium falciparum chromosome 8.                     40   1.8    12
(CR376781) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   1.8    6
(AC160174) Bos taurus clone CH240-89E24, WORKING DRAFT SEQUE...    40   1.8    7
(AX345947) Sequence 1018 from Patent WO0200928.                    44   1.8    3
(CZ538062) SRAA-aad17c11.g1 Strongyloides ratti whole genome...    40   1.9    2
(AL773542) Zebrafish DNA sequence from clone CH211-174L22.         40   2.0    5
(BH136491) ENTOH12TF Entamoeba histolytica Sheared DNA Entam...    36   2.1    2
(CP000048) Borrelia hermsii DAH, complete genome.                  36   2.1    14
(AE014844) Plasmodium falciparum 3D7 chromosome 12, section ...    30   2.2    12
(AC154326) Mus musculus chromosome 16 clone RP24-496J3, comp...    42   2.2    5
(CS468878) Sequence 69 from Patent EP1748080.                      32   2.2    11
(CS468877) Sequence 68 from Patent EP1748080.                      32   2.2    11
(CS419355) Sequence 69 from Patent WO2006094836.                   32   2.2    11
(CS419354) Sequence 68 from Patent WO2006094836.                   32   2.2    11
(CT573032) Mouse DNA sequence from clone RP24-315C3 on chrom...    34   2.3    5
(AM444646) Vitis vinifera contig VV78X186789.15, whole genom...    46   2.3    1
(AL049692) Human DNA sequence from clone RP1-74J1 on chromos...    46   2.3    1

>(AC114258) Dictyostelium discoideum chromosome 2 map
             complement(427476-387492) strain AX4, complete sequence.
          Length = 39984

 Score =  910 bits (459), Expect(6) = 0.0
 Identities = 459/459 (100%)
 Strand = Plus / Minus


Query: 381   atgtaactaatttaaatgaatgttattctttaacaaatttggaattaggtagaagagata 440
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33384 atgtaactaatttaaatgaatgttattctttaacaaatttggaattaggtagaagagata 33325


Query: 441   acccaaatctagaaaaaattattttccccaactctttatctttaacaactttaaatttgg 500
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33324 acccaaatctagaaaaaattattttccccaactctttatctttaacaactttaaatttgg 33265


Query: 501   gtggatataaagggaatcaattatcaaaaataccatcatcagtaacaaatttaaatttag 560
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33264 gtggatataaagggaatcaattatcaaaaataccatcatcagtaacaaatttaaatttag 33205


Query: 561   gatattattacaattttccaattgaagagaattctttacctaaaaatcttaaatcactta 620
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33204 gatattattacaattttccaattgaagagaattctttacctaaaaatcttaaatcactta 33145


Query: 621   attttggtgaatcttttgataaaccaattaattctaatctacttccaaaaactttaagaa 680
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33144 attttggtgaatcttttgataaaccaattaattctaatctacttccaaaaactttaagaa 33085


Query: 681   taatttatttccaatgtccaacttttaatcaaaatatttatgaattaccaaatcaattac 740
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33084 taatttatttccaatgtccaacttttaatcaaaatatttatgaattaccaaatcaattac 33025


Query: 741   cattattaaaaacaatatatttatcttcaaaaaatattagttttataaatactttagata 800
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33024 cattattaaaaacaatatatttatcttcaaaaaatattagttttataaatactttagata 32965


Query: 801   cttccttttattcaaaatatattagggttactgatgaac 839
             |||||||||||||||||||||||||||||||||||||||
Sbjct: 32964 cttccttttattcaaaatatattagggttactgatgaac 32926

 Score =  230 bits (116), Expect(6) = 0.0
 Identities = 116/116 (100%)
 Strand = Plus / Minus


Query: 109   aggtggttcacatttagaagctggtgatttaccttcaagtataagatatttggaattttt 168
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34140 aggtggttcacatttagaagctggtgatttaccttcaagtataagatatttggaattttt 34081


Query: 169   tggtagttataatccaattttacaagaaaattctttaccagattcgttgattagtg 224
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34080 tggtagttataatccaattttacaagaaaattctttaccagattcgttgattagtg 34025

 Score =  119 bits (60), Expect(6) = 0.0
 Identities = 60/60 (100%)
 Strand = Plus / Minus


Query: 16    tggataaagaaaatcaaataattagatcagtttggggaaataaatatataagagatttaa 75
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34312 tggataaagaaaatcaaataattagatcagtttggggaaataaatatataagagatttaa 34253

 Score = 73.8 bits (37), Expect(6) = 0.0
 Identities = 37/37 (100%)
 Strand = Plus / Minus


Query: 337   ctttggttcccctcttagtggtgatccatatcatttc 373
             |||||||||||||||||||||||||||||||||||||
Sbjct: 33428 ctttggttcccctcttagtggtgatccatatcatttc 33392

 Score = 67.9 bits (34), Expect(6) = 0.0
 Identities = 34/34 (100%)
 Strand = Plus / Minus


Query: 288   gcattgaattcactggaatatttaatcagtcatt 321
             ||||||||||||||||||||||||||||||||||
Sbjct: 33961 gcattgaattcactggaatatttaatcagtcatt 33928

 Score = 48.1 bits (24), Expect(6) = 0.0
 Identities = 24/24 (100%)
 Strand = Plus / Minus


Query: 85    atcttaatttgtataataataata 108
             ||||||||||||||||||||||||
Sbjct: 34243 atcttaatttgtataataataata 34220

 Score =  170 bits (86), Expect(6) = 1e-94
 Identities = 122/134 (91%)
 Strand = Plus / Minus


Query: 390   atttaaatgaatgttattctttaacaaatttggaattaggtagaagagataacccaaatc 449
             |||| |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 30679 atttcaatgaatgttattctttaacaaatttagaatttggtagaagtgataacccaaatt 30620


Query: 450   tagaaaaaattattttccccaactctttatctttaacaactttaaatttgggtggatata 509
             ||||||| | || ||| |||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 30619 tagaaaataataattttcccaactcttaatctttaacaactttaaatttgggtggacata 30560


Query: 510   aagggaatcaatta 523
             |||| |||||||||
Sbjct: 30559 aaggaaatcaatta 30546

 Score =  105 bits (53), Expect(6) = 1e-94
 Identities = 56/57 (98%)
 Strand = Plus / Minus


Query: 782   tttataaatactttagatacttccttttattcaaaatatattagggttactgatgaa 838
             |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 30447 tttataaatactttagatccttccttttattcaaaatatattagggttactgatgaa 30391

 Score = 87.7 bits (44), Expect(6) = 1e-94
 Identities = 53/56 (94%)
 Strand = Plus / Minus


Query: 728   ccaaatcaattaccattattaaaaacaatatatttatcttcaaaaaatattagttt 783
             ||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||
Sbjct: 30500 ccaaatcaattaccattattagaaacaatatatttatctttaaataatattagttt 30445

 Score = 52.0 bits (26), Expect(6) = 1e-94
 Identities = 44/50 (88%)
 Strand = Plus / Minus


Query: 645   caattaattctaatctacttccaaaaactttaagaataatttatttccaa 694
             ||||||||  |||||| |||||||| ||||| | ||||||||||||||||
Sbjct: 30551 caattaatattaatcttcttccaaagactttgaaaataatttatttccaa 30502

 Score = 46.1 bits (23), Expect(6) = 1e-94
 Identities = 32/35 (91%)
 Strand = Plus / Minus


Query: 16    tggataaagaaaatcaaataattagatcagtttgg 50
             |||| |||||||||||| |||||| ||||||||||
Sbjct: 32520 tggaaaaagaaaatcaagtaattaaatcagtttgg 32486

 Score = 42.1 bits (21), Expect(6) = 1e-94
 Identities = 21/21 (100%)
 Strand = Plus / Minus


Query: 88    ttaatttgtataataataata 108
             |||||||||||||||||||||
Sbjct: 32436 ttaatttgtataataataata 32416

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,117,183,486
Number of extensions: 78322842
Number of successful extensions: 9586880
Number of sequences better than 10.0: 309
Length of query: 914
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 890
Effective length of database: 97,308,875,965
Effective search space: 86604899608850
Effective search space used: 86604899608850
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.26
Homology vs Protein 
Query= Contig-U09512-1 (Contig-U09512-1Q) /CSM_Contig/Contig-U09512-1Q.Seq.d
         (914 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC114258_18(AC114258|pid:none) Dictyostelium discoideum chromoso...   357   3e-97
AC117176_63(AC117176|pid:none) Dictyostelium discoideum chromoso...    97   6e-19
AC117267_6(AC117267|pid:none) Dictyostelium discoideum chromosom...    87   1e-15
AC116960_62(AC116960|pid:none) Dictyostelium discoideum chromoso...    80   9e-14
AC116305_136(AC116305|pid:none) Dictyostelium discoideum chromos...    78   5e-13
(Q5UPD4) RecName: Full=Putative F-box and FNIP repeat-containing...    74   5e-12
AC116960_34(AC116960|pid:none) Dictyostelium discoideum chromoso...    74   9e-12
AC116984_119(AC116984|pid:none) Dictyostelium discoideum chromos...    72   3e-11
(Q556H2) RecName: Full=FNIP repeat-containing protein DDB_G02740...    66   1e-09
AC116986_27(AC116986|pid:none) Dictyostelium discoideum chromoso...    66   2e-09
(Q54JC0) RecName: Full=Calmodulin-binding protein CmbB; AltName:...    64   7e-09
AC116957_4(AC116957|pid:none) Dictyostelium discoideum chromosom...    60   1e-07
(Q8T126) RecName: Full=Probable inactive serine/threonine-protei...    58   4e-07
AC114258_16(AC114258|pid:none) Dictyostelium discoideum chromoso...    58   4e-07
AC116984_17(AC116984|pid:none) Dictyostelium discoideum chromoso...    57   7e-07
AC116957_83(AC116957|pid:none) Dictyostelium discoideum chromoso...    55   2e-06
AC115598_30(AC115598|pid:none) Dictyostelium discoideum chromoso...    55   2e-06
AC116984_124(AC116984|pid:none) Dictyostelium discoideum chromos...    55   3e-06
AC116957_13(AC116957|pid:none) Dictyostelium discoideum chromoso...    54   6e-06
AC114265_1(AC114265|pid:none) Dictyostelium discoideum chromosom...    54   7e-06
AC116957_6(AC116957|pid:none) Dictyostelium discoideum chromosom...    54   7e-06
(Q5UQL2) RecName: Full=Putative F-box and FNIP repeat-containing...    53   1e-05
AC116977_30(AC116977|pid:none) Dictyostelium discoideum chromoso...    52   2e-05
(Q1ZXK1) RecName: Full=FNIP repeat-containing protein DDB_G02773...    52   2e-05
AC117075_45(AC117075|pid:none) Dictyostelium discoideum chromoso...    49   2e-04
AC115680_16(AC115680|pid:none) Dictyostelium discoideum chromoso...    49   3e-04
(Q5UP38) RecName: Full=Putative FNIP repeat-containing protein L...    47   0.001
(Q86AH2) RecName: Full=FNIP repeat-containing protein DDB_G02719...    46   0.002
AC117072_27(AC117072|pid:none) Dictyostelium discoideum chromoso...    45   0.003
(Q5UR85) RecName: Full=Putative FNIP repeat-containing protein R...    44   0.010
AC115612_2(AC115612|pid:none) Dictyostelium discoideum chromosom...    42   0.022
(Q54FS2) RecName: Full=FNIP repeat-containing protein DDB_G02906...    41   0.049
AC115604_12(AC115604|pid:none) Dictyostelium discoideum chromoso...    41   0.064
CP000867_230(CP000867|pid:none) Methanococcus maripaludis C6, co...    41   0.064
CP000867_229(CP000867|pid:none) Methanococcus maripaludis C6, co...    41   0.064
CP000745_1662(CP000745|pid:none) Methanococcus maripaludis C7, c...    40   0.083
AC116305_99(AC116305|pid:none) Dictyostelium discoideum chromoso...    40   0.11
(Q5UPW6) RecName: Full=Putative FNIP repeat-containing protein L...    39   0.24
FM992690_318(FM992690|pid:none) Candida dubliniensis CD36 chromo...    39   0.24
AC117076_9(AC117076|pid:none) Dictyostelium discoideum chromosom...    39   0.32
FJ915412_1(FJ915412|pid:none) Gallus sonneratii isolate 72 TLR2A...    37   0.70
FJ915409_1(FJ915409|pid:none) Gallus varius isolate 167 TLR2A ge...    37   0.70
FJ915389_1(FJ915389|pid:none) Gallus lafayetii isolate 148 TLR2A...    37   0.70
FJ915399_1(FJ915399|pid:none) Gallus gallus isolate 262 TLR2A ge...    37   0.70
FJ915431_1(FJ915431|pid:none) Gallus gallus isolate 110 TLR2A ge...    37   0.70
FJ915387_1(FJ915387|pid:none) Gallus lafayetii isolate 547 TLR2A...    37   0.70
CR382138_1069(CR382138|pid:none) Debaryomyces hansenii strain CB...    37   0.92
(Q54FS1) RecName: Full=FNIP repeat-containing protein DDB_G02906...    37   1.2
CP000496_382(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...    37   1.2
BC160452_1(BC160452|pid:none) Xenopus tropicalis fibronectin leu...    36   1.6
CP000414_1797(CP000414|pid:none) Leuconostoc mesenteroides subsp...    36   1.6
BC077371_1(BC077371|pid:none) Xenopus laevis hypothetical LOC503...    36   2.0
AY879342_132(AY879342|pid:none) Shigella flexneri plasmid pSF5, ...    35   2.7
AL844509_581(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    35   2.7
AC024810_5(AC024810|pid:none) Caenorhabditis elegans cosmid Y54E...    35   2.7
AF063866_145(AF063866|pid:none) Melanoplus sanguinipes entomopox...    35   2.7
AC116984_74(AC116984|pid:none) Dictyostelium discoideum chromoso...    35   3.5
CP000117_1490(CP000117|pid:none) Anabaena variabilis ATCC 29413,...    35   4.6
(Q86B00) RecName: Full=Type-1 glutamine synthetase 1;          S...    34   6.0
AL844505_22(AL844505|pid:none) Plasmodium falciparum 3D7 chromos...    34   6.0
(Q6XHA7) RecName: Full=Probable serine/threonine-protein kinase ...    34   6.0
AM180254_4(AM180254|pid:none) Lawsonia intracellularis PHE/MN1-0...    34   6.0
FJ899569_10(FJ899569|pid:none) Pinus attenuata chloroplast, part...    34   6.0
(Q9DGB6) RecName: Full=Toll-like receptor 2 type-2; Flags: Precu...    34   7.8
CR628336_1944(CR628336|pid:none) Legionella pneumophila str. Par...    34   7.8
FJ915370_1(FJ915370|pid:none) Gallus gallus isolate 793 TLR2B ge...    34   7.8
FM992688_643(FM992688|pid:none) Candida dubliniensis CD36 chromo...    34   7.8
AC115604_7(AC115604|pid:none) Dictyostelium discoideum chromosom...    34   7.8

>AC114258_18(AC114258|pid:none) Dictyostelium discoideum chromosome
           2 map complement(427476-387492) strain AX4, complete
           sequence.
          Length = 435

 Score =  357 bits (916), Expect = 3e-97
 Identities = 182/253 (71%), Positives = 200/253 (79%), Gaps = 13/253 (5%)
 Frame = +2

Query: 122 LEAGDLPSSIRYLEFFGSYNPILQENSLPDSLISVIFNRRFNQQLXXXXXXXXXXSIEFT 301
           ++ G +P ++  ++F  S+   +++ +LP S+ S+ F   FN++L           I+
Sbjct: 183 IKVGMIPHNVTNIKFGDSFICRIEQFALPPSIRSISFGDSFNKELVGNILLSNIEYIKLG 242

Query: 302 GIFNQSL-------------GXXXXFGSPLSGDPYHFFFYVTNLNECYSLTNLELGRRDN 442
             F   +                  FGSPLSGDPYHFFFYVTNLNECYSLTNLELGRRDN
Sbjct: 243 KSFQSRIDIPSTVKTLKLTTNYNDNFGSPLSGDPYHFFFYVTNLNECYSLTNLELGRRDN 302

Query: 443 PNLEKIIFPNSLSLTTLNLGGYKGNQLSKIPSSVTNLNLGYYYNFPIEENSLPKNLKSLN 622
           PNLEKIIFPNSLSLTTLNLGGYKGNQLSKIPSSVTNLNLGYYYNFPIEENSLPKNLKSLN
Sbjct: 303 PNLEKIIFPNSLSLTTLNLGGYKGNQLSKIPSSVTNLNLGYYYNFPIEENSLPKNLKSLN 362

Query: 623 FGESFDKPINSNLLPKTLRIIYFQCPTFNQNIYELPNQLPLLKTIYLSSKNISFINTLDT 802
           FGESFDKPINSNLLPKTLRIIYFQCPTFNQNIYELPNQLPLLKTIYLSSKNISFINTLDT
Sbjct: 363 FGESFDKPINSNLLPKTLRIIYFQCPTFNQNIYELPNQLPLLKTIYLSSKNISFINTLDT 422

Query: 803 SFYSKYIRVTDEQ 841
           SFYSKYIRVTDEQ
Sbjct: 423 SFYSKYIRVTDEQ 435

 Score =  125 bits (315), Expect(2) = 2e-35
 Identities = 90/250 (36%), Positives = 132/250 (52%), Gaps = 8/250 (3%)
 Frame = +2

Query: 110 GGSHLEAGDLPSSIRYLEFFGSYNPILQENSLPDSLISVIFNRRFNQQLXXXXXXXXXXS 289
           GGSHLEAGDLPSSIRYLEFFGSYNPILQENSLPDSLISVIFNRRFNQQL
Sbjct: 59  GGSHLEAGDLPSSIRYLEFFGSYNPILQENSLPDSLISVIFNRRFNQQLN---------- 108

Query: 290 IEFTGIFNQSLGXXXXFGSPLSGDPYH---FFFYVTNLNECYSL-----TNLELGRRDNP 445
                  N+ +     F  P+  +       F Y+ N  +   +      +++  R
Sbjct: 109 -------NKIIKNGESFQQPILPNQLPEGLIFLYLDNTYQSTIIYGSIPNSVQNLRYTVE 161

Query: 446 NLEKIIFPNSLSLTTLNLGGYKGNQLSKIPSSVTNLNLGYYYNFPIEENSLPKNLKSLNF 625
           +  K   P  +S T L +      ++  IP +VTN+  G  +   IE+ +LP +++S++F
Sbjct: 162 SFSKTKVP--VSTTNLEVRANVDIKVGMIPHNVTNIKFGDSFICRIEQFALPPSIRSISF 219

Query: 626 GESFDKPINSNLLPKTLRIIYFQCPTFNQNIYELPNQLPLLKTIYLSSKNISFINTLDTS 805
           G+SF+K +  N+L   +   Y +     Q+  ++P+ +  LK    ++ N +F + L
Sbjct: 220 GDSFNKELVGNILLSNIE--YIKLGKSFQSRIDIPSTVKTLK--LTTNYNDNFGSPLSGD 275

Query: 806 FYSKYIRVTD 835
            Y  +  VT+
Sbjct: 276 PYHFFFYVTN 285

 Score = 47.4 bits (111), Expect(2) = 2e-35
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +3

Query: 15 MDKENQIIRSVWGNKYIRDLI 77
          MDKENQIIRSVWGNKYIRDLI
Sbjct: 1  MDKENQIIRSVWGNKYIRDLI 21

 Score = 46.6 bits (109), Expect = 0.001
 Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 16/154 (10%)
 Frame = +2

Query: 338 FGSPLSGDPYHFFFYVTNLNECYSLTNLELGRRDNPNLEKIIFPNSLSLTTLNLGGYKGN 517
           +G+    D   F+  + N N  Y    +E        L   ++ N L   +LN GG
Sbjct: 12  WGNKYIRDLIFFYLNLYNNNSNYYSFTIE-------KLNNYVYKNYLFDVSLNRGG-SHL 63

Query: 518 QLSKIPSSVTNLNLGYYYNFPIEENSLPKNLKSLNF---------------GESFDKPIN 652
           +   +PSS+  L     YN  ++ENSLP +L S+ F               GESF +PI
Sbjct: 64  EAGDLPSSIRYLEFFGSYNPILQENSLPDSLISVIFNRRFNQQLNNKIIKNGESFQQPIL 123

Query: 653 SNLLPKTLRIIYFQCPTFNQNIY-ELPNQLPLLK 751
            N LP+ L  +Y      +  IY  +PN +  L+
Sbjct: 124 PNQLPEGLIFLYLDNTYQSTIIYGSIPNSVQNLR 157

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,089,151,808
Number of extensions: 18264841
Number of successful extensions: 38940
Number of sequences better than 10.0: 68
Number of HSP's gapped: 38656
Number of HSP's successfully gapped: 171
Length of query: 304
Length of database: 1,040,966,779
Length adjustment: 128
Effective length of query: 176
Effective length of database: 630,818,299
Effective search space: 111024020624
Effective search space used: 111024020624
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.34  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.11  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U09512-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0