Contig-U09504-1
Contig ID Contig-U09504-1
Contig update 2002. 9.13
Contig sequence
>Contig-U09504-1 (Contig-U09504-1Q) /CSM_Contig/Contig-U09504-1Q.Seq.d
GGGACATAGTATGGGTGCTGGTATAGCATCAATTGTTGCAGCAAGTATGC
CACATTTAGTTGAACGTATCATTTGTTTAGATTTCATTGGTATACTTTCA
AAAGAACAAGATCAAATCAAAGCAATTCAATTCGCAATGCAAACTCGTAC
AACTATAAACAATAGAAAACCACATCTTTACAATAATAAACAAGCCATAT
TCGATAAATTAAAAGCAAACAATCCTTGGATTAAAGATGAAGCTGGTCAA
AGATTATTAGATAGATCAATTGAATCTGTTATCTCTCCAACTACTGGTGA
GCAATGTTATAAACTTAGACATGATCCACGTTTAGTTGGACCATCAATTT
TTATTATGCGTGAAGCAGAAGTTTTATTAATGTTGGATGAAATTCAATGT
CCAGTTTTATTGATTTGGGGTACGACATCATCTCAACAATTCCAAATTAA
AAAGAATTGGACACAAATCATGGAAGGTAGAATGTCACATATAAAGAATT
TAAAACAATTGGTTGTACCAGGTTCTCATCATTTCCATATGGAAAATACT
TCTGCATTCTCTCAAGATATTTTAGAATTTATGTTTGAAGAAAAGGATCT
CTCTTTTACACCATCATCAACTACTCAGCAGCAACAACAACAGCAACAAT
CAGCTGAAAATAAAAAGGGTGATAATCATAATCAAATAGCTGAACAAGAT
TTATCAACTTCAAATACTCCTT----------TTTCTTNCCCTTTGGTTG
TACCCGGTTCTCNTCCTTTCCCATTTGGCAGTTCCTTCCGGCTTTCTCTC
GTGGAATTTTCGCGTTTTTGTCTGACTACACAGGCCCCCTCGTTTCCTCA
AGGGTGAGGTGCTCGGGTGCAACAACCCCGCGCACCCTTCGGCTGCCATC
AAAAGGGGGTTTCAGCGGGGCCGGGGGGCGGGTGCCTCACGTGCCGGGGG
GCTCTCTTCATGGCGCCGAGTGTGTGGAGCCGACACCGGTNGGTAGATTT
TATATAATAATTCTCCNTCCCATTTTTTGGTTTATCACAAAAAAGGAAAA
ACAAAAAAAAAAAGAAGGCTAACTTATTTGTTTTAATTATTAGATATAAA
TATATTATTGGTGATTCATAAAATAATGCGTTCTTATCGCTTATATATTG
TAAAATAGCATAGAATTTATAAAAAATAAAATTTATCCATAAGACTAAAG
TAAAA

Gap gap included
Contig length 1195
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 4235986
End point 4236727
Strand (PLUS/MINUS) PLUS
Number of clones 7
Number of EST 8
Link to clone list U09504
List of clone(s)

est1=SSL812F,1,667
est2=CFJ229Z,6,637
est3=CFC816Z,21,640
est4=SFI389Z,25,644
est5=VFL675Z,63,637
est6=SFD204Z,93,629
est7=VFK784Z,188,723
est8=SSL812Z,724,1197
Translated Amino Acid sequence
GHSMGAGIASIVAASMPHLVERIICLDFIGILSKEQDQIKAIQFAMQTRTTINNRKPHLY
NNKQAIFDKLKANNPWIKDEAGQRLLDRSIESVISPTTGEQCYKLRHDPRLVGPSIFIMR
EAEVLLMLDEIQCPVLLIWGTTSSQQFQIKKNWTQIMEGRMSHIKNLKQLVVPGSHHFHM
ENTSAFSQDILEFMFEEKDLSFTPSSTTQQQQQQQQSAENKKGDNHNQIAEQDLSTSNTP
---

---FXPFGCTRFSSFPIWQFLPAFSRGIFAFLSDYTGPLVSSRVRCSGATTPRTLRLPSK
GGFSGAGGRVPHVPGGSLHGAECVEPTPVGRFYIIILXPIFWFITKKEKQKKKEG*licf
ny*i*iyyw*fik*cvliayil*nsiefiknkiyp*d*sk


Translated Amino Acid sequence (All Frames)
Frame A:
gt*ygcwysinccskyatfs*tyhlfrfhwytfkrtrsnqsnsirnansynykq*kttsl
q**tshir*ikskqsld*r*swskiir*in*icylsnyw*aml*t*t*stfswtinfyya
*srsfinvg*nsmssfidlgydiistipn*keldtnhgr*nvtykefktigctrfssfpy
gkyfcilsryfriyv*rkgslfytiinysaatttatis*k*kg**s*sns*trfinfkys
---

---flxlwlypvlxlshlavpsgflswnfrvfv*lhrpprflkgevlgcnnpahpsaaik
rgfqrgrgagasragglsswrrvcgadtgx*ilynnspshflvyhkkgktkkkrrltylf
*lldinillvihkimrsyrlyivk*hriykk*nlsirlk*

Frame B:
GHSMGAGIASIVAASMPHLVERIICLDFIGILSKEQDQIKAIQFAMQTRTTINNRKPHLY
NNKQAIFDKLKANNPWIKDEAGQRLLDRSIESVISPTTGEQCYKLRHDPRLVGPSIFIMR
EAEVLLMLDEIQCPVLLIWGTTSSQQFQIKKNWTQIMEGRMSHIKNLKQLVVPGSHHFHM
ENTSAFSQDILEFMFEEKDLSFTPSSTTQQQQQQQQSAENKKGDNHNQIAEQDLSTSNTP
---

---FXPFGCTRFSSFPIWQFLPAFSRGIFAFLSDYTGPLVSSRVRCSGATTPRTLRLPSK
GGFSGAGGRVPHVPGGSLHGAECVEPTPVGRFYIIILXPIFWFITKKEKQKKKEG*licf
ny*i*iyyw*fik*cvliayil*nsiefiknkiyp*d*sk

Frame C:
divwvlv*hqllqqvchi*lnvsfv*islvyfqknkikskqfnsqcklvql*tienhift
iinkpysin*kqtilglkmklvkdy*idqlnllslqllvsnvinldmihv*ldhqfllcv
kqkfy*cwmkfnvqfy*fgvrhhlnnsklkrighkswkvechi*ri*nnwlyqvliisiw
killhslkif*nlclkkrisllhhhqllssnnnsnnqlkikrviiiik*lnkiyqlqill
---

---sxplvvpgsxpfpfgssfrlslvefsrfclttqapsfpqg*garvqqprapfgchqk
gvsagpgggcltcrgalfmapsvwsrhrxvdfi**fsxpffglsqkrknkkkkkanlfvl
iirykyiigds*nnaflsliyckia*nl*kikfihktkvk

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U09504-1 (Contig-U09504-1Q)
/CSM_Contig/Contig-U09504-1Q.Seq.d
(1205 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U09504-1 (Contig-U09504-1Q) /CSM_Contig/Conti... 1721 0.0
Contig-U11521-1 (Contig-U11521-1Q) /CSM_Contig/Conti... 46 9e-05
Contig-U14675-1 (Contig-U14675-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U14511-1 (Contig-U14511-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U12755-1 (Contig-U12755-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U12248-1 (Contig-U12248-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U11415-1 (Contig-U11415-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U11357-1 (Contig-U11357-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U10914-1 (Contig-U10914-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U10906-1 (Contig-U10906-1Q) /CSM_Contig/Conti... 42 0.001

>Contig-U09504-1 (Contig-U09504-1Q) /CSM_Contig/Contig-U09504-1Q.Seq.d
Length = 1205

Score = 1721 bits (868), Expect = 0.0
Identities = 904/904 (100%)
Strand = Plus / Plus


Query: 1 gggacatagtatgggtgctggtatagcatcaattgttgcagcaagtatgccacatttagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggacatagtatgggtgctggtatagcatcaattgttgcagcaagtatgccacatttagt 60


Query: 61 tgaacgtatcatttgtttagatttcattggtatactttcaaaagaacaagatcaaatcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgaacgtatcatttgtttagatttcattggtatactttcaaaagaacaagatcaaatcaa 120


Query: 121 agcaattcaattcgcaatgcaaactcgtacaactataaacaatagaaaaccacatcttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agcaattcaattcgcaatgcaaactcgtacaactataaacaatagaaaaccacatcttta 180


Query: 181 caataataaacaagccatattcgataaattaaaagcaaacaatccttggattaaagatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caataataaacaagccatattcgataaattaaaagcaaacaatccttggattaaagatga 240


Query: 241 agctggtcaaagattattagatagatcaattgaatctgttatctctccaactactggtga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agctggtcaaagattattagatagatcaattgaatctgttatctctccaactactggtga 300


Query: 301 gcaatgttataaacttagacatgatccacgtttagttggaccatcaatttttattatgcg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gcaatgttataaacttagacatgatccacgtttagttggaccatcaatttttattatgcg 360


Query: 361 tgaagcagaagttttattaatgttggatgaaattcaatgtccagttttattgatttgggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgaagcagaagttttattaatgttggatgaaattcaatgtccagttttattgatttgggg 420


Query: 421 tacgacatcatctcaacaattccaaattaaaaagaattggacacaaatcatggaaggtag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacgacatcatctcaacaattccaaattaaaaagaattggacacaaatcatggaaggtag 480


Query: 481 aatgtcacatataaagaatttaaaacaattggttgtaccaggttctcatcatttccatat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aatgtcacatataaagaatttaaaacaattggttgtaccaggttctcatcatttccatat 540


Query: 541 ggaaaatacttctgcattctctcaagatattttagaatttatgtttgaagaaaaggatct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ggaaaatacttctgcattctctcaagatattttagaatttatgtttgaagaaaaggatct 600


Query: 601 ctcttttacaccatcatcaactactcagcagcaacaacaacagcaacaatcagctgaaaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ctcttttacaccatcatcaactactcagcagcaacaacaacagcaacaatcagctgaaaa 660


Query: 661 taaaaagggtgataatcataatcaaatagctgaacaagatttatcaacttcaaatactcc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 taaaaagggtgataatcataatcaaatagctgaacaagatttatcaacttcaaatactcc 720


Query: 721 ttnnnnnnnnnntttcttnccctttggttgtacccggttctcntcctttcccatttggca 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ttnnnnnnnnnntttcttnccctttggttgtacccggttctcntcctttcccatttggca 780


Query: 781 gttccttccggctttctctcgtggaattttcgcgtttttgtctgactacacaggccccct 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gttccttccggctttctctcgtggaattttcgcgtttttgtctgactacacaggccccct 840


Query: 841 cgtttcctcaagggtgaggtgctcgggtgcaacaaccccgcgcacccttcggctgccatc 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 cgtttcctcaagggtgaggtgctcgggtgcaacaaccccgcgcacccttcggctgccatc 900


Query: 901 aaaa 904
||||
Sbjct: 901 aaaa 904


Score = 281 bits (142), Expect = 9e-76
Identities = 142/142 (100%)
Strand = Plus / Plus


Query: 1064 gaaggctaacttatttgttttaattattagatataaatatattattggtgattcataaaa 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1064 gaaggctaacttatttgttttaattattagatataaatatattattggtgattcataaaa 1123


Query: 1124 taatgcgttcttatcgcttatatattgtaaaatagcatagaatttataaaaaataaaatt 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1124 taatgcgttcttatcgcttatatattgtaaaatagcatagaatttataaaaaataaaatt 1183


Query: 1184 tatccataagactaaagtaaaa 1205
||||||||||||||||||||||
Sbjct: 1184 tatccataagactaaagtaaaa 1205


Score = 161 bits (81), Expect = 2e-39
Identities = 87/87 (100%)
Strand = Plus / Plus


Query: 952 ctctcttcatggcgccgagtgtgtggagccgacaccggtnggtagattttatataataat 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 ctctcttcatggcgccgagtgtgtggagccgacaccggtnggtagattttatataataat 1011


Query: 1012 tctccntcccattttttggtttatcac 1038
|||||||||||||||||||||||||||
Sbjct: 1012 tctccntcccattttttggtttatcac 1038


>Contig-U11521-1 (Contig-U11521-1Q) /CSM_Contig/Contig-U11521-1Q.Seq.d
Length = 1441

Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 626 cagcagcaacaacaacagcaaca 648
|||||||||||||||||||||||
Sbjct: 1031 cagcagcaacaacaacagcaaca 1053


Score = 40.1 bits (20), Expect = 0.005
Identities = 23/24 (95%)
Strand = Plus / Plus


Query: 626 cagcagcaacaacaacagcaacaa 649
||||| ||||||||||||||||||
Sbjct: 1073 cagcaacaacaacaacagcaacaa 1096


Score = 40.1 bits (20), Expect = 0.005
Identities = 23/24 (95%)
Strand = Plus / Plus


Query: 626 cagcagcaacaacaacagcaacaa 649
|||||||| |||||||||||||||
Sbjct: 1058 cagcagcagcaacaacagcaacaa 1081


Score = 36.2 bits (18), Expect = 0.085
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 632 caacaacaacagcaacaa 649
||||||||||||||||||
Sbjct: 953 caacaacaacagcaacaa 970


Score = 34.2 bits (17), Expect = 0.34
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 626 cagcagcaacaacaaca 642
|||||||||||||||||
Sbjct: 1013 cagcagcaacaacaaca 1029


Score = 34.2 bits (17), Expect = 0.34
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 626 cagcagcaacaacaaca 642
|||||||||||||||||
Sbjct: 1145 cagcagcaacaacaaca 1161


Score = 34.2 bits (17), Expect = 0.34
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 629 cagcaacaacaacagca 645
|||||||||||||||||
Sbjct: 980 cagcaacaacaacagca 996


Score = 32.2 bits (16), Expect = 1.3
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 626 cagcagcaacaacaacagca 645
||||| ||||||||||||||
Sbjct: 1016 cagcaacaacaacaacagca 1035


Score = 32.2 bits (16), Expect = 1.3
Identities = 22/24 (91%)
Strand = Plus / Plus


Query: 626 cagcagcaacaacaacagcaacaa 649
|||||||||||||| || ||||||
Sbjct: 1061 cagcagcaacaacagcaacaacaa 1084


Score = 32.2 bits (16), Expect = 1.3
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 626 cagcagcaacaacaacagca 645
|||||||| |||||||||||
Sbjct: 995 cagcagcagcaacaacagca 1014


Score = 32.2 bits (16), Expect = 1.3
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 626 cagcagcaacaacaacagca 645
|||||||||||||| |||||
Sbjct: 998 cagcagcaacaacagcagca 1017


Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 635 caacaacagcaacaa 649
|||||||||||||||
Sbjct: 965 caacaacagcaacaa 979


Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 635 caacaacagcaacaa 649
|||||||||||||||
Sbjct: 974 caacaacagcaacaa 988


>Contig-U14675-1 (Contig-U14675-1Q) /CSM_Contig/Contig-U14675-1Q.Seq.d
Length = 1212

Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 625 tcagcagcaacaacaacagcaacaa 649
|||||||||||||||||| ||||||
Sbjct: 1080 tcagcagcaacaacaacaacaacaa 1104


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,592
Number of Sequences: 6905
Number of extensions: 26592
Number of successful extensions: 5650
Number of sequences better than 10.0: 574
length of query: 1205
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1189
effective length of database: 5,564,391
effective search space: 6616060899
effective search space used: 6616060899
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.16
Homology vs DNA
Query= Contig-U09504-1 (Contig-U09504-1Q) /CSM_Contig/Contig-U09504-1Q.Seq.d
(1205 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ375616) Dictyostelium discoideum cDNA clone:ddc19i08, 3' ... 1251 0.0 1
(BJ374264) Dictyostelium discoideum cDNA clone:ddc6p04, 3' e... 1229 0.0 1
(BJ434731) Dictyostelium discoideum cDNA clone:ddv24e20, 3' ... 1138 0.0 1
(BJ402705) Dictyostelium discoideum cDNA clone:dds17b23, 3' ... 1118 0.0 2
(BJ433754) Dictyostelium discoideum cDNA clone:ddv22h21, 3' ... 1061 0.0 1
(BJ399698) Dictyostelium discoideum cDNA clone:dds7g02, 3' e... 965 0.0 2
(C93871) Dictyostelium discoideum slug cDNA, clone SSL812. 329 0.0 3
(AU074770) Dictyostelium discoideum slug cDNA, clone SSL812. 476 e-129 1
(DY302241) KN0AAQ2YG21RM1 CitNFL Citrus clementina cDNA 5', ... 58 8e-04 1
(DY299208) IC0AAA97CH11RM1 CitNFL Citrus clementina cDNA 5',... 58 8e-04 1
(DY291964) IC0AAA79CE04RM1 CitNFL Citrus clementina cDNA 5',... 58 8e-04 1
(DY276814) IC0AAA42AG02RM1 CitNFL Citrus clementina cDNA 5',... 58 8e-04 1
(DY272149) IC0AAA30BE02RM1 CitNFL Citrus clementina cDNA 5',... 58 8e-04 1
(DY272123) IC0AAA30BB11RM1 CitNFL Citrus clementina cDNA 5',... 58 8e-04 1
(DY263857) IC0AAA12DG03RM1 CitNFL Citrus clementina cDNA 5',... 58 8e-04 1
(CX545504) UCRPT01_5_023_C10_T3 Poncirus trifoliata CTV-chal... 58 8e-04 1
(CX545496) UCRPT01_5_023_C04_T3 Poncirus trifoliata CTV-chal... 58 8e-04 1
(CX544983) UCRPT01_5_019_A10_T3 Poncirus trifoliata CTV-chal... 58 8e-04 1
(CX043949) UCRCS07_14E01_g Parent Washington Navel Orange Th... 58 8e-04 1
(CV886227) UCRCS04_2_021G10_T7 Ruby Orange Developing Flower... 58 8e-04 1
(CV886226) UCRCS04_2_021G10_T3 Ruby Orange Developing Flower... 58 8e-04 1
(CV710818) UCRPT01_0014P07_r Poncirus trifoliata CTV-challen... 58 8e-04 1
(CV710511) UCRPT01_0014H24_r Poncirus trifoliata CTV-challen... 58 8e-04 1
(CV709921) UCRPT01_0013J17_r Poncirus trifoliata CTV-challen... 58 8e-04 1
(CV708952) UCRPT01_0012B20_r Poncirus trifoliata CTV-challen... 58 8e-04 1
(CV706972) UCRPT01_0009C02_r Poncirus trifoliata CTV-challen... 58 8e-04 1
(EY707370) CS00-C3-701-067-H07-CT.F Sweet orange fruit, deve... 58 8e-04 1
(EY706707) CS00-C3-701-060-E01-CT.F Sweet orange fruit, deve... 58 8e-04 1
(EY703151) CS00-C3-701-016-D11-CT.F Sweet orange fruit, deve... 58 8e-04 1
(EY691475) CS00-C2-003-110-B04-CT.F Sweet orange bark, green... 58 8e-04 1
(EY690419) CS00-C2-003-085-G09-CT.F Sweet orange bark, green... 58 8e-04 1
(CP000656) Mycobacterium gilvum PYR-GCK, complete genome. 58 8e-04 1
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 50 0.001 8
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome. 40 0.007 8
(AC153566) Mus musculus 10 BAC RP23-5H4 (Roswell Park Cancer... 54 0.013 1
(EB497123) 1099435207755 12-DrosW-norm-1P5Kb Drosophila will... 54 0.013 1
(DC237828) Hodotermopsis sjoestedti cDNA clone: MY0652AHsHg_... 54 0.013 1
(FG819029) UCRVU04_CCNI5072_b1 Cowpea 524B Mixed Tissue and ... 54 0.013 1
(FF397250) MOOE956TF MOO Vigna unguiculata cDNA 5', mRNA seq... 54 0.013 1
(FF394359) MOOE956TR MOO Vigna unguiculata cDNA 3', mRNA seq... 54 0.013 1
(AC115606) Dictyostelium discoideum chromosome 2 map 159760-... 44 0.015 6
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5... 40 0.023 11
(AL049180) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 42 0.026 11
(CQ592194) Sequence 19952 from Patent WO0171042. 52 0.050 1
(CQ592193) Sequence 19951 from Patent WO0171042. 52 0.050 1
(AY094811) Drosophila melanogaster LD30050 full insert cDNA. 52 0.050 1
(AE014297) Drosophila melanogaster chromosome 3R, complete s... 52 0.050 1
(AC009350) Drosophila melanogaster, chromosome 3R, region 85... 52 0.050 1
(AC020081) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 52 0.050 1
(CR861255) Pongo abelii mRNA; cDNA DKFZp459O033 (from clone ... 52 0.050 1
(AY812261) Schistosoma japonicum SJCHGC08336 protein mRNA, p... 52 0.050 1
(EH640864) EST11972 LK04 Laupala kohalensis cDNA clone 10610... 52 0.050 1
(EH632039) EST3146 LK04 Laupala kohalensis cDNA clone 106102... 52 0.050 1
(EB628472) AGENCOURT_54972152 D. mojavensis EST Drosophila m... 52 0.050 1
(CV689310) sjs4-011_H05_sjs4-011H05-T3 SJS Schistosoma japon... 52 0.050 1
(CA920643) EST638361 MTUS Medicago truncatula cDNA clone MTU... 52 0.050 1
(AI113723) GH10160.5prime GH Drosophila melanogaster head pO... 52 0.050 1
(BI372664) RE59681.5prime RE Drosophila melanogaster normali... 52 0.050 1
(BI371735) RE58688.5prime RE Drosophila melanogaster normali... 52 0.050 1
(BI241521) RE38611.5prime RE Drosophila melanogaster normali... 52 0.050 1
(BI238769) RE41835.5prime RE Drosophila melanogaster normali... 52 0.050 1
(BI167219) RE07555.5prime RE Drosophila melanogaster normali... 52 0.050 1
(AA950081) LD30050.5prime LD Drosophila melanogaster embryo ... 52 0.050 1
(FE386464) CBNT4556.fwd CBNT_Daphnia_pulex_Chosen_One_Librar... 52 0.050 1
(AC172206) Bos taurus clone CH240-185H5, WORKING DRAFT SEQUE... 48 0.050 6
(CF109862) Shultzomica03113 Rat lung airway and parenchyma c... 48 0.053 2
(CT027625) D.miranda DNA sequence *** SEQUENCING IN PROGRESS... 48 0.083 3
(AZ787036) 2M0032E21R Mouse 10kb plasmid UUGC1M library Mus ... 44 0.11 2
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 32 0.14 9
(FF611839) G825P5162RH12.T0 Acorn worm normalized gastrula p... 40 0.15 2
(DB228516) Homo sapiens cDNA clone TRACH3021357, 5' end, mRN... 48 0.16 2
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s... 42 0.16 11
(AJ290422) Fugu rubripes gra2 gene (partial), agal gene, rl4... 50 0.18 2
(AF321235) Mus musculus chromosome 7-E3 B4 olfactory recepto... 48 0.19 3
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117... 42 0.19 7
(AL691419) Mouse DNA sequence from clone RP23-95I4 on chromo... 50 0.20 1
(AC167198) Mus musculus chromosome 3, clone RP23-409M14, com... 50 0.20 1
(AC162308) Mus musculus BAC clone RP23-109E9 from chromosome... 50 0.20 1
(AC147377) Mus musculus BAC clone RP23-156K23 from chromosom... 50 0.20 1
(AC140315) Mus musculus BAC clone RP23-396I19 from chromosom... 50 0.20 1
(AC124735) Mus musculus BAC clone RP23-310O18 from 5, comple... 50 0.20 1
(AC122466) Mus musculus BAC clone RP24-304N8 from chromosome... 50 0.20 1
(AC120004) Mus musculus chromosome 5, clone RP24-150N15, com... 50 0.20 1
(CR382131) Yarrowia lipolytica chromosome E of strain CLIB 1... 50 0.20 1
(CQ605721) Sequence 33479 from Patent WO0171042. 50 0.20 1
(CQ605720) Sequence 33478 from Patent WO0171042. 50 0.20 1
(Z54236) Caenorhabditis elegans Cosmid C27B7. 50 0.20 1
(U26846) Drosophila virilis alcohol dehydrogenase (Adh-1) ge... 50 0.20 1
(S73636) E74A {5' region, exons 1, 2, and 3} [Drosophila vir... 50 0.20 1
(FM160648) Trypanosoma brucei TREU927 BAC26D11 sequence, str... 50 0.20 1
(AM910987) Plasmodium knowlesi strain H chromosome 5, comple... 50 0.20 1
(AE014298) Drosophila melanogaster chromosome X, complete se... 50 0.20 1
(AE014134) Drosophila melanogaster chromosome 2L, complete s... 50 0.20 1
(AC011761) Drosophila melanogaster clone BACH50G05, complete... 50 0.20 1
(AC010917) Drosophila melanogaster, chromosome X, region 19E... 50 0.20 1
(AC008325) Drosophila melanogaster clone BACR05M06, complete... 50 0.20 1
(AC008324) Drosophila melanogaster clone BACR25K01, complete... 50 0.20 1
(AC141967) Rattus norvegicus clone CH230-356E15, WORKING DRA... 50 0.20 1
(AC122097) Rattus norvegicus clone CH230-108A24, WORKING DRA... 50 0.20 1
(AC120294) Rattus norvegicus clone CH230-166P16, WORKING DRA... 50 0.20 1

>(BJ375616) Dictyostelium discoideum cDNA clone:ddc19i08, 3' end,
single read.
Length = 632

Score = 1251 bits (631), Expect = 0.0
Identities = 631/631 (100%)
Strand = Plus / Minus


Query: 6 atagtatgggtgctggtatagcatcaattgttgcagcaagtatgccacatttagttgaac 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 atagtatgggtgctggtatagcatcaattgttgcagcaagtatgccacatttagttgaac 573


Query: 66 gtatcatttgtttagatttcattggtatactttcaaaagaacaagatcaaatcaaagcaa 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gtatcatttgtttagatttcattggtatactttcaaaagaacaagatcaaatcaaagcaa 513


Query: 126 ttcaattcgcaatgcaaactcgtacaactataaacaatagaaaaccacatctttacaata 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ttcaattcgcaatgcaaactcgtacaactataaacaatagaaaaccacatctttacaata 453


Query: 186 ataaacaagccatattcgataaattaaaagcaaacaatccttggattaaagatgaagctg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ataaacaagccatattcgataaattaaaagcaaacaatccttggattaaagatgaagctg 393


Query: 246 gtcaaagattattagatagatcaattgaatctgttatctctccaactactggtgagcaat 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gtcaaagattattagatagatcaattgaatctgttatctctccaactactggtgagcaat 333


Query: 306 gttataaacttagacatgatccacgtttagttggaccatcaatttttattatgcgtgaag 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gttataaacttagacatgatccacgtttagttggaccatcaatttttattatgcgtgaag 273


Query: 366 cagaagttttattaatgttggatgaaattcaatgtccagttttattgatttggggtacga 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cagaagttttattaatgttggatgaaattcaatgtccagttttattgatttggggtacga 213


Query: 426 catcatctcaacaattccaaattaaaaagaattggacacaaatcatggaaggtagaatgt 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 catcatctcaacaattccaaattaaaaagaattggacacaaatcatggaaggtagaatgt 153


Query: 486 cacatataaagaatttaaaacaattggttgtaccaggttctcatcatttccatatggaaa 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 cacatataaagaatttaaaacaattggttgtaccaggttctcatcatttccatatggaaa 93


Query: 546 atacttctgcattctctcaagatattttagaatttatgtttgaagaaaaggatctctctt 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 atacttctgcattctctcaagatattttagaatttatgtttgaagaaaaggatctctctt 33


Query: 606 ttacaccatcatcaactactcagcagcaaca 636
|||||||||||||||||||||||||||||||
Sbjct: 32 ttacaccatcatcaactactcagcagcaaca 2

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,417,419,685
Number of extensions: 94974285
Number of successful extensions: 9312354
Number of sequences better than 10.0: 1627
Length of query: 1205
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1181
Effective length of database: 97,308,875,965
Effective search space: 114921782514665
Effective search space used: 114921782514665
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.26
Homology vs Protein
Query= Contig-U09504-1 (Contig-U09504-1Q) /CSM_Contig/Contig-U09504-1Q.Seq.d
(1205 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q54M29) RecName: Full=Serine hydrolase-like protein DDB_G028623... 462 e-128
AP008229_4155(AP008229|pid:none) Xanthomonas oryzae pv. oryzae M... 84 1e-14
AE013598_4316(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K... 84 1e-14
AE008923_4164(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 80 2e-13
AE008922_4040(AE008922|pid:none) Xanthomonas campestris pv. camp... 76 2e-12
AM743169_4380(AM743169|pid:none) Stenotrophomonas maltophilia K2... 75 6e-12
CP001111_3986(CP001111|pid:none) Stenotrophomonas maltophilia R5... 74 8e-12
(A2BGU9) RecName: Full=Serine hydrolase-like protein; E... 69 3e-10
CR954247_487(CR954247|pid:none) Pseudoalteromonas haloplanktis s... 69 3e-10
CR378666_132(CR378666|pid:none) Photobacterium profundum SS9; se... 69 4e-10
CP000749_2103(CP000749|pid:none) Marinomonas sp. MWYL1, complete... 68 6e-10
CP000675_526(CP000675|pid:none) Legionella pneumophila str. Corb... 66 2e-09
AM286690_1483(AM286690|pid:none) Alcanivorax borkumensis SK2, co... 65 6e-09
CP001103_1130(CP001103|pid:none) Alteromonas macleodii 'Deep eco... 64 1e-08
CR628337_509(CR628337|pid:none) Legionella pneumophila str. Lens... 63 2e-08
CP000514_1548(CP000514|pid:none) Marinobacter aquaeolei VT8, com... 63 2e-08
AF454863_1(AF454863|pid:none) Legionella pneumophila putative li... 63 2e-08
FM178379_907(FM178379|pid:none) Aliivibrio salmonicida LFI1238 c... 62 3e-08
CP001139_1758(CP001139|pid:none) Vibrio fischeri MJ11 chromosome... 62 4e-08
AE016853_2179(AE016853|pid:none) Pseudomonas syringae pv. tomato... 60 2e-07
CP000020_1724(CP000020|pid:none) Vibrio fischeri ES114 chromosom... 60 2e-07
BT075731_1(BT075731|pid:none) Osmerus mordax clone omor-eva-509-... 60 2e-07
CP000304_1865(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 59 4e-07
FM209186_3705(FM209186|pid:none) Pseudomonas aeruginosa LESB58 c... 57 1e-06
CP000744_3609(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 56 2e-06
AE017354_1426(AE017354|pid:none) Legionella pneumophila subsp. p... 56 3e-06
CP000302_1611(CP000302|pid:none) Shewanella denitrificans OS217,... 55 4e-06
CP000712_1682(CP000712|pid:none) Pseudomonas putida F1, complete... 55 4e-06
CP000563_1832(CP000563|pid:none) Shewanella baltica OS155, compl... 55 4e-06
A82133(A82133) conserved hypothetical protein VC1986 [imported] ... 55 6e-06
CP000089_3201(CP000089|pid:none) Dechloromonas aromatica RCB, co... 54 8e-06
CP000675_1525(CP000675|pid:none) Legionella pneumophila str. Cor... 54 1e-05
CP000083_1148(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 54 1e-05
CP000627_1538(CP000627|pid:none) Vibrio cholerae O395 chromosome... 54 1e-05
BA000037_1052(BA000037|pid:none) Vibrio vulnificus YJ016 DNA, ch... 52 4e-05
CP000058_1909(CP000058|pid:none) Pseudomonas syringae pv. phaseo... 52 4e-05
CP001157_978(CP001157|pid:none) Azotobacter vinelandii DJ, compl... 52 4e-05
CP000926_3710(CP000926|pid:none) Pseudomonas putida GB-1, comple... 50 1e-04
CP000076_1721(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 50 2e-04
CP000094_4197(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 49 3e-04
EU670516_1(EU670516|pid:none) Drosophila sechellia strain ss77 k... 49 5e-04
CP000712_3099(CP000712|pid:none) Pseudomonas putida F1, complete... 49 5e-04
CP000926_3277(CP000926|pid:none) Pseudomonas putida GB-1, comple... 49 5e-04
EU310340_1(EU310340|pid:none) Drosophila mauritiana strain Lig72... 49 5e-04
EU310337_1(EU310337|pid:none) Drosophila mauritiana strain 105 k... 48 6e-04
EU670477_1(EU670477|pid:none) Drosophila simulans strain SpiethD... 48 6e-04
EU670475_1(EU670475|pid:none) Drosophila simulans strain Florida... 48 6e-04
CP000469_2371(CP000469|pid:none) Shewanella sp. ANA-3, complete ... 47 0.001
CP001281_413(CP001281|pid:none) Thauera sp. MZ1T, complete genome. 44 0.009
CP000681_1749(CP000681|pid:none) Shewanella putrefaciens CN-32, ... 44 0.009
CP000157_2216(CP000157|pid:none) Erythrobacter litoralis HTCC259... 44 0.011
CU179680_231(CU179680|pid:none) Mycoplasma agalactiae PG2 chromo... 42 0.033
CP000089_363(CP000089|pid:none) Dechloromonas aromatica RCB, com... 42 0.033
CP000851_2440(CP000851|pid:none) Shewanella pealeana ATCC 700345... 42 0.056
EF085479_1(EF085479|pid:none) Picea sitchensis clone WS02713_C18... 42 0.056
CP000934_1902(CP000934|pid:none) Cellvibrio japonicus Ueda107, c... 42 0.056
BT077280_1(BT077280|pid:none) Caligus rogercresseyi clone crog-e... 41 0.096
CP001322_4728(CP001322|pid:none) Desulfatibacillum alkenivorans ... 40 0.13
CP000269_1276(CP000269|pid:none) Janthinobacterium sp. Marseille... 40 0.16
CU633749_1148(CU633749|pid:none) Cupriavidus taiwanensis str. LM... 40 0.16
CP000507_1928(CP000507|pid:none) Shewanella amazonensis SB2B, co... 40 0.21
CU207211_2058(CU207211|pid:none) Herminiimonas arsenicoxydans ch... 39 0.28
CP000447_1719(CP000447|pid:none) Shewanella frigidimarina NCIMB ... 39 0.37
CP000348_1535(CP000348|pid:none) Leptospira borgpetersenii serov... 39 0.37
AE016823_1937(AE016823|pid:none) Leptospira interrogans serovar ... 38 0.81
CP000155_349(CP000155|pid:none) Hahella chejuensis KCTC 2396, co... 37 1.4
CP000352_1062(CP000352|pid:none) Ralstonia metallidurans CH34, c... 37 1.8
CP001154_1265(CP001154|pid:none) Laribacter hongkongensis HLHK9,... 37 1.8
CP000685_561(CP000685|pid:none) Flavobacterium johnsoniae UW101,... 36 2.4
CP000472_2185(CP000472|pid:none) Shewanella piezotolerans WP3, c... 36 2.4
AY458643_22(AY458643|pid:none) Uncultured marine bacterium 561 c... 36 3.1
(Q6DRD9) RecName: Full=Abhydrolase domain-containing protein 11;... 35 5.3
CP001037_3807(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 35 5.3
CP000542_95(CP000542|pid:none) Verminephrobacter eiseniae EF01-2... 35 6.9
AP008971_1436(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA... 35 6.9
AE016958_2832(AE016958|pid:none) Mycobacterium avium subsp. para... 34 9.0
CP000010_1443(CP000010|pid:none) Burkholderia mallei ATCC 23344 ... 34 9.0
AM420293_668(AM420293|pid:none) Saccharopolyspora erythraea NRRL... 34 9.0
CP000083_4152(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 34 9.0
CP000570_2542(CP000570|pid:none) Burkholderia pseudomallei 668 c... 34 9.0

>(Q54M29) RecName: Full=Serine hydrolase-like protein DDB_G0286239;
EC=3.1.-.-;
Length = 359

Score = 462 bits (1189), Expect = e-128
Identities = 231/239 (96%), Positives = 231/239 (96%)
Frame = +2

Query: 2 GHSMGAGIASIVAASMPHLVERIICLDFIGILSKEQDQIKAIQFAMQTRTTINNRKPHLY 181
GHSMGAGIASIVAASMPHLVERIICLDFIGILSKEQDQIKAIQFAMQTRTTINNRKPHLY
Sbjct: 109 GHSMGAGIASIVAASMPHLVERIICLDFIGILSKEQDQIKAIQFAMQTRTTINNRKPHLY 168

Query: 182 NNKQAIFDKLKANNPWIKDEAGQRLLDRSIESVISPTTGEQCYKLRHDPRLVGPSIFIMR 361
NNKQAIFDKLKANNPWIKDEAGQRLLDRSIESVISPTTGEQCYKLRHDPRLVGPSIFIMR
Sbjct: 169 NNKQAIFDKLKANNPWIKDEAGQRLLDRSIESVISPTTGEQCYKLRHDPRLVGPSIFIMR 228

Query: 362 EAEVLLMLDEIQCPVLLIWGTTSSQQFQIKKNWTQIMEGRMSHIKNLKQLVVPGSHHFHM 541
EAEVLLMLDEIQCPVLLIWGTTSSQQFQIKKNWTQIMEGRMSHIKNLKQLVVPGSHHFHM
Sbjct: 229 EAEVLLMLDEIQCPVLLIWGTTSSQQFQIKKNWTQIMEGRMSHIKNLKQLVVPGSHHFHM 288

Query: 542 ENTSAFSQDILEFMFEEKDLSFTPSSTTXXXXXXXXSAENKKGDNHNQIAEQDLSTSNT 718
ENTSAFSQDILEFMFEEKDLSFTPSSTT SAENKKGDNHNQIAEQDLSTSNT
Sbjct: 289 ENTSAFSQDILEFMFEEKDLSFTPSSTTQQQQQQQQSAENKKGDNHNQIAEQDLSTSNT 347

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,950,949,810
Number of extensions: 39258085
Number of successful extensions: 89854
Number of sequences better than 10.0: 80
Number of HSP's gapped: 89721
Number of HSP's successfully gapped: 80
Length of query: 401
Length of database: 1,040,966,779
Length adjustment: 131
Effective length of query: 270
Effective length of database: 621,205,444
Effective search space: 167725469880
Effective search space used: 167725469880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.91 gvh: 0.39 alm: 0.34 top: 0.40 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: peroxisomal

>> prediction for Contig-U09504-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 2
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 2
CH (FL, L) 0
CF (FL, S) 2
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0