Contig-U09504-1 |
Contig ID |
Contig-U09504-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1195 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
4235986 |
End point |
4236727 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
7 |
Number of EST |
8 |
Link to clone list |
U09504 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.16 |
Homology vs DNA |
Query= Contig-U09504-1 (Contig-U09504-1Q) /CSM_Contig/Contig-U09504-1Q.Seq.d (1205 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ375616) Dictyostelium discoideum cDNA clone:ddc19i08, 3' ... 1251 0.0 1 (BJ374264) Dictyostelium discoideum cDNA clone:ddc6p04, 3' e... 1229 0.0 1 (BJ434731) Dictyostelium discoideum cDNA clone:ddv24e20, 3' ... 1138 0.0 1 (BJ402705) Dictyostelium discoideum cDNA clone:dds17b23, 3' ... 1118 0.0 2 (BJ433754) Dictyostelium discoideum cDNA clone:ddv22h21, 3' ... 1061 0.0 1 (BJ399698) Dictyostelium discoideum cDNA clone:dds7g02, 3' e... 965 0.0 2 (C93871) Dictyostelium discoideum slug cDNA, clone SSL812. 329 0.0 3 (AU074770) Dictyostelium discoideum slug cDNA, clone SSL812. 476 e-129 1 (DY302241) KN0AAQ2YG21RM1 CitNFL Citrus clementina cDNA 5', ... 58 8e-04 1 (DY299208) IC0AAA97CH11RM1 CitNFL Citrus clementina cDNA 5',... 58 8e-04 1 (DY291964) IC0AAA79CE04RM1 CitNFL Citrus clementina cDNA 5',... 58 8e-04 1 (DY276814) IC0AAA42AG02RM1 CitNFL Citrus clementina cDNA 5',... 58 8e-04 1 (DY272149) IC0AAA30BE02RM1 CitNFL Citrus clementina cDNA 5',... 58 8e-04 1 (DY272123) IC0AAA30BB11RM1 CitNFL Citrus clementina cDNA 5',... 58 8e-04 1 (DY263857) IC0AAA12DG03RM1 CitNFL Citrus clementina cDNA 5',... 58 8e-04 1 (CX545504) UCRPT01_5_023_C10_T3 Poncirus trifoliata CTV-chal... 58 8e-04 1 (CX545496) UCRPT01_5_023_C04_T3 Poncirus trifoliata CTV-chal... 58 8e-04 1 (CX544983) UCRPT01_5_019_A10_T3 Poncirus trifoliata CTV-chal... 58 8e-04 1 (CX043949) UCRCS07_14E01_g Parent Washington Navel Orange Th... 58 8e-04 1 (CV886227) UCRCS04_2_021G10_T7 Ruby Orange Developing Flower... 58 8e-04 1 (CV886226) UCRCS04_2_021G10_T3 Ruby Orange Developing Flower... 58 8e-04 1 (CV710818) UCRPT01_0014P07_r Poncirus trifoliata CTV-challen... 58 8e-04 1 (CV710511) UCRPT01_0014H24_r Poncirus trifoliata CTV-challen... 58 8e-04 1 (CV709921) UCRPT01_0013J17_r Poncirus trifoliata CTV-challen... 58 8e-04 1 (CV708952) UCRPT01_0012B20_r Poncirus trifoliata CTV-challen... 58 8e-04 1 (CV706972) UCRPT01_0009C02_r Poncirus trifoliata CTV-challen... 58 8e-04 1 (EY707370) CS00-C3-701-067-H07-CT.F Sweet orange fruit, deve... 58 8e-04 1 (EY706707) CS00-C3-701-060-E01-CT.F Sweet orange fruit, deve... 58 8e-04 1 (EY703151) CS00-C3-701-016-D11-CT.F Sweet orange fruit, deve... 58 8e-04 1 (EY691475) CS00-C2-003-110-B04-CT.F Sweet orange bark, green... 58 8e-04 1 (EY690419) CS00-C2-003-085-G09-CT.F Sweet orange bark, green... 58 8e-04 1 (CP000656) Mycobacterium gilvum PYR-GCK, complete genome. 58 8e-04 1 (AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 50 0.001 8 (CP000770) Candidatus Sulcia muelleri GWSS, complete genome. 40 0.007 8 (AC153566) Mus musculus 10 BAC RP23-5H4 (Roswell Park Cancer... 54 0.013 1 (EB497123) 1099435207755 12-DrosW-norm-1P5Kb Drosophila will... 54 0.013 1 (DC237828) Hodotermopsis sjoestedti cDNA clone: MY0652AHsHg_... 54 0.013 1 (FG819029) UCRVU04_CCNI5072_b1 Cowpea 524B Mixed Tissue and ... 54 0.013 1 (FF397250) MOOE956TF MOO Vigna unguiculata cDNA 5', mRNA seq... 54 0.013 1 (FF394359) MOOE956TR MOO Vigna unguiculata cDNA 3', mRNA seq... 54 0.013 1 (AC115606) Dictyostelium discoideum chromosome 2 map 159760-... 44 0.015 6 (AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5... 40 0.023 11 (AL049180) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 42 0.026 11 (CQ592194) Sequence 19952 from Patent WO0171042. 52 0.050 1 (CQ592193) Sequence 19951 from Patent WO0171042. 52 0.050 1 (AY094811) Drosophila melanogaster LD30050 full insert cDNA. 52 0.050 1 (AE014297) Drosophila melanogaster chromosome 3R, complete s... 52 0.050 1 (AC009350) Drosophila melanogaster, chromosome 3R, region 85... 52 0.050 1 (AC020081) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 52 0.050 1 (CR861255) Pongo abelii mRNA; cDNA DKFZp459O033 (from clone ... 52 0.050 1 (AY812261) Schistosoma japonicum SJCHGC08336 protein mRNA, p... 52 0.050 1 (EH640864) EST11972 LK04 Laupala kohalensis cDNA clone 10610... 52 0.050 1 (EH632039) EST3146 LK04 Laupala kohalensis cDNA clone 106102... 52 0.050 1 (EB628472) AGENCOURT_54972152 D. mojavensis EST Drosophila m... 52 0.050 1 (CV689310) sjs4-011_H05_sjs4-011H05-T3 SJS Schistosoma japon... 52 0.050 1 (CA920643) EST638361 MTUS Medicago truncatula cDNA clone MTU... 52 0.050 1 (AI113723) GH10160.5prime GH Drosophila melanogaster head pO... 52 0.050 1 (BI372664) RE59681.5prime RE Drosophila melanogaster normali... 52 0.050 1 (BI371735) RE58688.5prime RE Drosophila melanogaster normali... 52 0.050 1 (BI241521) RE38611.5prime RE Drosophila melanogaster normali... 52 0.050 1 (BI238769) RE41835.5prime RE Drosophila melanogaster normali... 52 0.050 1 (BI167219) RE07555.5prime RE Drosophila melanogaster normali... 52 0.050 1 (AA950081) LD30050.5prime LD Drosophila melanogaster embryo ... 52 0.050 1 (FE386464) CBNT4556.fwd CBNT_Daphnia_pulex_Chosen_One_Librar... 52 0.050 1 (AC172206) Bos taurus clone CH240-185H5, WORKING DRAFT SEQUE... 48 0.050 6 (CF109862) Shultzomica03113 Rat lung airway and parenchyma c... 48 0.053 2 (CT027625) D.miranda DNA sequence *** SEQUENCING IN PROGRESS... 48 0.083 3 (AZ787036) 2M0032E21R Mouse 10kb plasmid UUGC1M library Mus ... 44 0.11 2 (AC116960) Dictyostelium discoideum chromosome 2 map complem... 32 0.14 9 (FF611839) G825P5162RH12.T0 Acorn worm normalized gastrula p... 40 0.15 2 (DB228516) Homo sapiens cDNA clone TRACH3021357, 5' end, mRN... 48 0.16 2 (AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s... 42 0.16 11 (AJ290422) Fugu rubripes gra2 gene (partial), agal gene, rl4... 50 0.18 2 (AF321235) Mus musculus chromosome 7-E3 B4 olfactory recepto... 48 0.19 3 (AC116924) Dictyostelium discoideum chromosome 2 map 6357117... 42 0.19 7 (AL691419) Mouse DNA sequence from clone RP23-95I4 on chromo... 50 0.20 1 (AC167198) Mus musculus chromosome 3, clone RP23-409M14, com... 50 0.20 1 (AC162308) Mus musculus BAC clone RP23-109E9 from chromosome... 50 0.20 1 (AC147377) Mus musculus BAC clone RP23-156K23 from chromosom... 50 0.20 1 (AC140315) Mus musculus BAC clone RP23-396I19 from chromosom... 50 0.20 1 (AC124735) Mus musculus BAC clone RP23-310O18 from 5, comple... 50 0.20 1 (AC122466) Mus musculus BAC clone RP24-304N8 from chromosome... 50 0.20 1 (AC120004) Mus musculus chromosome 5, clone RP24-150N15, com... 50 0.20 1 (CR382131) Yarrowia lipolytica chromosome E of strain CLIB 1... 50 0.20 1 (CQ605721) Sequence 33479 from Patent WO0171042. 50 0.20 1 (CQ605720) Sequence 33478 from Patent WO0171042. 50 0.20 1 (Z54236) Caenorhabditis elegans Cosmid C27B7. 50 0.20 1 (U26846) Drosophila virilis alcohol dehydrogenase (Adh-1) ge... 50 0.20 1 (S73636) E74A {5' region, exons 1, 2, and 3} [Drosophila vir... 50 0.20 1 (FM160648) Trypanosoma brucei TREU927 BAC26D11 sequence, str... 50 0.20 1 (AM910987) Plasmodium knowlesi strain H chromosome 5, comple... 50 0.20 1 (AE014298) Drosophila melanogaster chromosome X, complete se... 50 0.20 1 (AE014134) Drosophila melanogaster chromosome 2L, complete s... 50 0.20 1 (AC011761) Drosophila melanogaster clone BACH50G05, complete... 50 0.20 1 (AC010917) Drosophila melanogaster, chromosome X, region 19E... 50 0.20 1 (AC008325) Drosophila melanogaster clone BACR05M06, complete... 50 0.20 1 (AC008324) Drosophila melanogaster clone BACR25K01, complete... 50 0.20 1 (AC141967) Rattus norvegicus clone CH230-356E15, WORKING DRA... 50 0.20 1 (AC122097) Rattus norvegicus clone CH230-108A24, WORKING DRA... 50 0.20 1 (AC120294) Rattus norvegicus clone CH230-166P16, WORKING DRA... 50 0.20 1
>(BJ375616) Dictyostelium discoideum cDNA clone:ddc19i08, 3' end, single read. Length = 632
Score = 1251 bits (631), Expect = 0.0 Identities = 631/631 (100%) Strand = Plus / Minus
Query: 6 atagtatgggtgctggtatagcatcaattgttgcagcaagtatgccacatttagttgaac 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 632 atagtatgggtgctggtatagcatcaattgttgcagcaagtatgccacatttagttgaac 573
Query: 66 gtatcatttgtttagatttcattggtatactttcaaaagaacaagatcaaatcaaagcaa 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 572 gtatcatttgtttagatttcattggtatactttcaaaagaacaagatcaaatcaaagcaa 513
Query: 126 ttcaattcgcaatgcaaactcgtacaactataaacaatagaaaaccacatctttacaata 185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 512 ttcaattcgcaatgcaaactcgtacaactataaacaatagaaaaccacatctttacaata 453
Query: 186 ataaacaagccatattcgataaattaaaagcaaacaatccttggattaaagatgaagctg 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 452 ataaacaagccatattcgataaattaaaagcaaacaatccttggattaaagatgaagctg 393
Query: 246 gtcaaagattattagatagatcaattgaatctgttatctctccaactactggtgagcaat 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 392 gtcaaagattattagatagatcaattgaatctgttatctctccaactactggtgagcaat 333
Query: 306 gttataaacttagacatgatccacgtttagttggaccatcaatttttattatgcgtgaag 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 332 gttataaacttagacatgatccacgtttagttggaccatcaatttttattatgcgtgaag 273
Query: 366 cagaagttttattaatgttggatgaaattcaatgtccagttttattgatttggggtacga 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 272 cagaagttttattaatgttggatgaaattcaatgtccagttttattgatttggggtacga 213
Query: 426 catcatctcaacaattccaaattaaaaagaattggacacaaatcatggaaggtagaatgt 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 212 catcatctcaacaattccaaattaaaaagaattggacacaaatcatggaaggtagaatgt 153
Query: 486 cacatataaagaatttaaaacaattggttgtaccaggttctcatcatttccatatggaaa 545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 152 cacatataaagaatttaaaacaattggttgtaccaggttctcatcatttccatatggaaa 93
Query: 546 atacttctgcattctctcaagatattttagaatttatgtttgaagaaaaggatctctctt 605 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 92 atacttctgcattctctcaagatattttagaatttatgtttgaagaaaaggatctctctt 33
Query: 606 ttacaccatcatcaactactcagcagcaaca 636 ||||||||||||||||||||||||||||||| Sbjct: 32 ttacaccatcatcaactactcagcagcaaca 2
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,417,419,685 Number of extensions: 94974285 Number of successful extensions: 9312354 Number of sequences better than 10.0: 1627 Length of query: 1205 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1181 Effective length of database: 97,308,875,965 Effective search space: 114921782514665 Effective search space used: 114921782514665 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.26 |
Homology vs Protein |
Query= Contig-U09504-1 (Contig-U09504-1Q) /CSM_Contig/Contig-U09504-1Q.Seq.d (1205 letters)
Database: nrp_A 3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
(Q54M29) RecName: Full=Serine hydrolase-like protein DDB_G028623... 462 e-128 AP008229_4155(AP008229|pid:none) Xanthomonas oryzae pv. oryzae M... 84 1e-14 AE013598_4316(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K... 84 1e-14 AE008923_4164(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 80 2e-13 AE008922_4040(AE008922|pid:none) Xanthomonas campestris pv. camp... 76 2e-12 AM743169_4380(AM743169|pid:none) Stenotrophomonas maltophilia K2... 75 6e-12 CP001111_3986(CP001111|pid:none) Stenotrophomonas maltophilia R5... 74 8e-12 (A2BGU9) RecName: Full=Serine hydrolase-like protein; E... 69 3e-10 CR954247_487(CR954247|pid:none) Pseudoalteromonas haloplanktis s... 69 3e-10 CR378666_132(CR378666|pid:none) Photobacterium profundum SS9; se... 69 4e-10 CP000749_2103(CP000749|pid:none) Marinomonas sp. MWYL1, complete... 68 6e-10 CP000675_526(CP000675|pid:none) Legionella pneumophila str. Corb... 66 2e-09 AM286690_1483(AM286690|pid:none) Alcanivorax borkumensis SK2, co... 65 6e-09 CP001103_1130(CP001103|pid:none) Alteromonas macleodii 'Deep eco... 64 1e-08 CR628337_509(CR628337|pid:none) Legionella pneumophila str. Lens... 63 2e-08 CP000514_1548(CP000514|pid:none) Marinobacter aquaeolei VT8, com... 63 2e-08 AF454863_1(AF454863|pid:none) Legionella pneumophila putative li... 63 2e-08 FM178379_907(FM178379|pid:none) Aliivibrio salmonicida LFI1238 c... 62 3e-08 CP001139_1758(CP001139|pid:none) Vibrio fischeri MJ11 chromosome... 62 4e-08 AE016853_2179(AE016853|pid:none) Pseudomonas syringae pv. tomato... 60 2e-07 CP000020_1724(CP000020|pid:none) Vibrio fischeri ES114 chromosom... 60 2e-07 BT075731_1(BT075731|pid:none) Osmerus mordax clone omor-eva-509-... 60 2e-07 CP000304_1865(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 59 4e-07 FM209186_3705(FM209186|pid:none) Pseudomonas aeruginosa LESB58 c... 57 1e-06 CP000744_3609(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 56 2e-06 AE017354_1426(AE017354|pid:none) Legionella pneumophila subsp. p... 56 3e-06 CP000302_1611(CP000302|pid:none) Shewanella denitrificans OS217,... 55 4e-06 CP000712_1682(CP000712|pid:none) Pseudomonas putida F1, complete... 55 4e-06 CP000563_1832(CP000563|pid:none) Shewanella baltica OS155, compl... 55 4e-06 A82133(A82133) conserved hypothetical protein VC1986 [imported] ... 55 6e-06 CP000089_3201(CP000089|pid:none) Dechloromonas aromatica RCB, co... 54 8e-06 CP000675_1525(CP000675|pid:none) Legionella pneumophila str. Cor... 54 1e-05 CP000083_1148(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 54 1e-05 CP000627_1538(CP000627|pid:none) Vibrio cholerae O395 chromosome... 54 1e-05 BA000037_1052(BA000037|pid:none) Vibrio vulnificus YJ016 DNA, ch... 52 4e-05 CP000058_1909(CP000058|pid:none) Pseudomonas syringae pv. phaseo... 52 4e-05 CP001157_978(CP001157|pid:none) Azotobacter vinelandii DJ, compl... 52 4e-05 CP000926_3710(CP000926|pid:none) Pseudomonas putida GB-1, comple... 50 1e-04 CP000076_1721(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 50 2e-04 CP000094_4197(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 49 3e-04 EU670516_1(EU670516|pid:none) Drosophila sechellia strain ss77 k... 49 5e-04 CP000712_3099(CP000712|pid:none) Pseudomonas putida F1, complete... 49 5e-04 CP000926_3277(CP000926|pid:none) Pseudomonas putida GB-1, comple... 49 5e-04 EU310340_1(EU310340|pid:none) Drosophila mauritiana strain Lig72... 49 5e-04 EU310337_1(EU310337|pid:none) Drosophila mauritiana strain 105 k... 48 6e-04 EU670477_1(EU670477|pid:none) Drosophila simulans strain SpiethD... 48 6e-04 EU670475_1(EU670475|pid:none) Drosophila simulans strain Florida... 48 6e-04 CP000469_2371(CP000469|pid:none) Shewanella sp. ANA-3, complete ... 47 0.001 CP001281_413(CP001281|pid:none) Thauera sp. MZ1T, complete genome. 44 0.009 CP000681_1749(CP000681|pid:none) Shewanella putrefaciens CN-32, ... 44 0.009 CP000157_2216(CP000157|pid:none) Erythrobacter litoralis HTCC259... 44 0.011 CU179680_231(CU179680|pid:none) Mycoplasma agalactiae PG2 chromo... 42 0.033 CP000089_363(CP000089|pid:none) Dechloromonas aromatica RCB, com... 42 0.033 CP000851_2440(CP000851|pid:none) Shewanella pealeana ATCC 700345... 42 0.056 EF085479_1(EF085479|pid:none) Picea sitchensis clone WS02713_C18... 42 0.056 CP000934_1902(CP000934|pid:none) Cellvibrio japonicus Ueda107, c... 42 0.056 BT077280_1(BT077280|pid:none) Caligus rogercresseyi clone crog-e... 41 0.096 CP001322_4728(CP001322|pid:none) Desulfatibacillum alkenivorans ... 40 0.13 CP000269_1276(CP000269|pid:none) Janthinobacterium sp. Marseille... 40 0.16 CU633749_1148(CU633749|pid:none) Cupriavidus taiwanensis str. LM... 40 0.16 CP000507_1928(CP000507|pid:none) Shewanella amazonensis SB2B, co... 40 0.21 CU207211_2058(CU207211|pid:none) Herminiimonas arsenicoxydans ch... 39 0.28 CP000447_1719(CP000447|pid:none) Shewanella frigidimarina NCIMB ... 39 0.37 CP000348_1535(CP000348|pid:none) Leptospira borgpetersenii serov... 39 0.37 AE016823_1937(AE016823|pid:none) Leptospira interrogans serovar ... 38 0.81 CP000155_349(CP000155|pid:none) Hahella chejuensis KCTC 2396, co... 37 1.4 CP000352_1062(CP000352|pid:none) Ralstonia metallidurans CH34, c... 37 1.8 CP001154_1265(CP001154|pid:none) Laribacter hongkongensis HLHK9,... 37 1.8 CP000685_561(CP000685|pid:none) Flavobacterium johnsoniae UW101,... 36 2.4 CP000472_2185(CP000472|pid:none) Shewanella piezotolerans WP3, c... 36 2.4 AY458643_22(AY458643|pid:none) Uncultured marine bacterium 561 c... 36 3.1 (Q6DRD9) RecName: Full=Abhydrolase domain-containing protein 11;... 35 5.3 CP001037_3807(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 35 5.3 CP000542_95(CP000542|pid:none) Verminephrobacter eiseniae EF01-2... 35 6.9 AP008971_1436(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA... 35 6.9 AE016958_2832(AE016958|pid:none) Mycobacterium avium subsp. para... 34 9.0 CP000010_1443(CP000010|pid:none) Burkholderia mallei ATCC 23344 ... 34 9.0 AM420293_668(AM420293|pid:none) Saccharopolyspora erythraea NRRL... 34 9.0 CP000083_4152(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 34 9.0 CP000570_2542(CP000570|pid:none) Burkholderia pseudomallei 668 c... 34 9.0
>(Q54M29) RecName: Full=Serine hydrolase-like protein DDB_G0286239; EC=3.1.-.-; Length = 359
Score = 462 bits (1189), Expect = e-128 Identities = 231/239 (96%), Positives = 231/239 (96%) Frame = +2
Query: 2 GHSMGAGIASIVAASMPHLVERIICLDFIGILSKEQDQIKAIQFAMQTRTTINNRKPHLY 181 GHSMGAGIASIVAASMPHLVERIICLDFIGILSKEQDQIKAIQFAMQTRTTINNRKPHLY Sbjct: 109 GHSMGAGIASIVAASMPHLVERIICLDFIGILSKEQDQIKAIQFAMQTRTTINNRKPHLY 168
Query: 182 NNKQAIFDKLKANNPWIKDEAGQRLLDRSIESVISPTTGEQCYKLRHDPRLVGPSIFIMR 361 NNKQAIFDKLKANNPWIKDEAGQRLLDRSIESVISPTTGEQCYKLRHDPRLVGPSIFIMR Sbjct: 169 NNKQAIFDKLKANNPWIKDEAGQRLLDRSIESVISPTTGEQCYKLRHDPRLVGPSIFIMR 228
Query: 362 EAEVLLMLDEIQCPVLLIWGTTSSQQFQIKKNWTQIMEGRMSHIKNLKQLVVPGSHHFHM 541 EAEVLLMLDEIQCPVLLIWGTTSSQQFQIKKNWTQIMEGRMSHIKNLKQLVVPGSHHFHM Sbjct: 229 EAEVLLMLDEIQCPVLLIWGTTSSQQFQIKKNWTQIMEGRMSHIKNLKQLVVPGSHHFHM 288
Query: 542 ENTSAFSQDILEFMFEEKDLSFTPSSTTXXXXXXXXSAENKKGDNHNQIAEQDLSTSNT 718 ENTSAFSQDILEFMFEEKDLSFTPSSTT SAENKKGDNHNQIAEQDLSTSNT Sbjct: 289 ENTSAFSQDILEFMFEEKDLSFTPSSTTQQQQQQQQSAENKKGDNHNQIAEQDLSTSNT 347
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3204285 Number of Hits to DB: 1,950,949,810 Number of extensions: 39258085 Number of successful extensions: 89854 Number of sequences better than 10.0: 80 Number of HSP's gapped: 89721 Number of HSP's successfully gapped: 80 Length of query: 401 Length of database: 1,040,966,779 Length adjustment: 131 Effective length of query: 270 Effective length of database: 621,205,444 Effective search space: 167725469880 Effective search space used: 167725469880 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
2 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
2 |
CH (FL, L) |
0 |
CF (FL, S) |
2 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |