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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U09489-1
Contig ID Contig-U09489-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U09489-1 (Contig-U09489-1Q) /CSM_Contig/Contig-U09489-1Q.Seq.d
ATTTGGTGATCGATTTAATCAAGCACTATCGGTTGGTTGTATTCCACCAA
AAGTTACTCATTTAAAGTTTGGTAGATGTTTTAATCAACCTTTAAAACTT
GGTGTAATTCCTGATTCTTGTACTTTTATTCAATTTGGTTCACAATTTAA
TCAATCATTAGAACCAATGGTTATACCATCATCAGTTAAAGAATTAATAT
TTGGTTCACAATATAATCAACCTACAATTCAAGGCACATTTCCTGATAGA
ATTAAGAAGTTGGTATTCTCTGATGACCATGATCAGTTTCATTCACAAGA
TACATTACCAAAATCTTTAGTACATTTAGAATTTG----------CATTT
CTCTCTAGAGTTAATTAGTCAATTATATCCAGAACAATCCATAAAATACT
GGGTACAATATAGATTCAACTCTAAAAGTAATTCATTTGGTTATCCAAAA
TTCATTGGTGTTTCAACTCTTATGGATCCTGATATGGGCTTCCTTGTTAA
TGATACCATTATTTTAAATGTTTCAATTTTACAACTTAAACCAATAAAAA
AAAGTTTTGGATTTTTATAAAATTAGTCCAAAAAAAAAAAAAAAAA
Gap gap included
Contig length 586
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 6679782
End point 6680369
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U09489
List of clone(s) 

est1=SSL361F,1,336
est2=SSL361Z,337,588
Translated Amino Acid sequence 
FGDRFNQALSVGCIPPKVTHLKFGRCFNQPLKLGVIPDSCTFIQFGSQFNQSLEPMVIPS
SVKELIFGSQYNQPTIQGTFPDRIKKLVFSDDHDQFHSQDTLPKSLVHLEF---

---HFSLELISQLYPEQSIKYWVQYRFNSKSNSFGYPKFIGVSTLMDPDMGFLVNDTIIL
NVSILQLKPIKKSFGFL*n*skkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
iw*si*sstigwlystksysfkvw*mf*stfktwcns*flyfysiwfti*siirtngyti
is*riniwfti*stynsrhis**n*evgil**p*svsftryitkifstfri---

---HFSLELISQLYPEQSIKYWVQYRFNSKSNSFGYPKFIGVSTLMDPDMGFLVNDTIIL
NVSILQLKPIKKSFGFL*n*skkkkk

Frame B:
FGDRFNQALSVGCIPPKVTHLKFGRCFNQPLKLGVIPDSCTFIQFGSQFNQSLEPMVIPS
SVKELIFGSQYNQPTIQGTFPDRIKKLVFSDDHDQFHSQDTLPKSLVHLEF---

---isl*s*lvnyiqnnp*ntgynidstlkvihlviqnslvfqllwiliwasllmiplf*
mfqfynlnq*kkvldfykispkkkkk

Frame C:
lvidlikhyrlvvfhqklli*slvdvlinl*nlv*flilvllfnlvhnlinh*nqwlyhh
qlkn*ylvhniinlqfkahflielrswyslmtmisfihkihyqnl*yi*nl---

---flsrvn*siisrtihkilgti*iql*k*fiwlskihwcfnsygs*yglpc**yhyfk
cfnftt*tnkkkfwifiklvqkkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U09489-1 (Contig-U09489-1Q)
/CSM_Contig/Contig-U09489-1Q.Seq.d
         (596 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09489-1 (Contig-U09489-1Q) /CSM_Contig/Conti...  1041  0.0
Contig-U04028-1 (Contig-U04028-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U13825-1 (Contig-U13825-1Q) /CSM_Contig/Conti...    36  0.042
Contig-U11200-1 (Contig-U11200-1Q) /CSM_Contig/Conti...    36  0.042
Contig-U10443-1 (Contig-U10443-1Q) /CSM_Contig/Conti...    36  0.042
Contig-U04170-1 (Contig-U04170-1Q) /CSM_Contig/Conti...    36  0.042
Contig-U01495-1 (Contig-U01495-1Q) /CSM_Contig/Conti...    36  0.042
Contig-U13980-1 (Contig-U13980-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U12283-1 (Contig-U12283-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U11723-1 (Contig-U11723-1Q) /CSM_Contig/Conti...    34  0.16

>Contig-U09489-1 (Contig-U09489-1Q) /CSM_Contig/Contig-U09489-1Q.Seq.d
          Length = 596

 Score = 1041 bits (525), Expect = 0.0
 Identities = 571/579 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttggtgatcgatttaatcaagcactatcggttggttgtattccaccaaaagttactca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atttggtgatcgatttaatcaagcactatcggttggttgtattccaccaaaagttactca 60

                                                                       
Query: 61  tttaaagtttggtagatgttttaatcaacctttaaaacttggtgtaattcctgattcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tttaaagtttggtagatgttttaatcaacctttaaaacttggtgtaattcctgattcttg 120

                                                                       
Query: 121 tacttttattcaatttggttcacaatttaatcaatcattagaaccaatggttataccatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tacttttattcaatttggttcacaatttaatcaatcattagaaccaatggttataccatc 180

                                                                       
Query: 181 atcagttaaagaattaatatttggttcacaatataatcaacctacaattcaaggcacatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atcagttaaagaattaatatttggttcacaatataatcaacctacaattcaaggcacatt 240

                                                                       
Query: 241 tcctgatagaattaagaagttggtattctctgatgaccatgatcagtttcattcacaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcctgatagaattaagaagttggtattctctgatgaccatgatcagtttcattcacaaga 300

                                                                       
Query: 301 tacattaccaaaatctttagtacatttagaatttgnnnnnnnnnncatttctctctagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tacattaccaaaatctttagtacatttagaatttgnnnnnnnnnncatttctctctagag 360

                                                                       
Query: 361 ttaattagtcaattatatccagaacaatccataaaatactgggtacaatatagattcaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttaattagtcaattatatccagaacaatccataaaatactgggtacaatatagattcaac 420

                                                                       
Query: 421 tctaaaagtaattcatttggttatccaaaattcattggtgtttcaactcttatggatcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tctaaaagtaattcatttggttatccaaaattcattggtgtttcaactcttatggatcct 480

                                                                       
Query: 481 gatatgggcttccttgttaatgataccattattttaaatgtttcaattttacaacttaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gatatgggcttccttgttaatgataccattattttaaatgtttcaattttacaacttaaa 540

                                                  
Query: 541 ccaatnnnnnnnngttttggatttttataaaattagtcc 579
           |||||        ||||||||||||||||||||||||||
Sbjct: 541 ccaataaaaaaaagttttggatttttataaaattagtcc 579


>Contig-U04028-1 (Contig-U04028-1Q) /CSM_Contig/Contig-U04028-1Q.Seq.d
          Length = 914

 Score = 38.2 bits (19), Expect = 0.011
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 170 gttataccatcatcagtta 188
           |||||||||||||||||||
Sbjct: 404 gttataccatcatcagtta 422


 Score = 30.2 bits (15), Expect = 2.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 172 tataccatcatcagt 186
           |||||||||||||||
Sbjct: 343 tataccatcatcagt 357


>Contig-U13825-1 (Contig-U13825-1Q) /CSM_Contig/Contig-U13825-1Q.Seq.d
          Length = 1566

 Score = 36.2 bits (18), Expect = 0.042
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 32  gttggttgtattccaccaaaag 53
           ||||||||||||||| ||||||
Sbjct: 228 gttggttgtattccatcaaaag 249


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7929
Number of Sequences: 6905
Number of extensions: 7929
Number of successful extensions: 825
Number of sequences better than 10.0: 93
length of query: 596
length of database: 5,674,871
effective HSP length: 16
effective length of query: 580
effective length of database: 5,564,391
effective search space: 3227346780
effective search space used: 3227346780
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.16
Homology vs DNA 
Query= Contig-U09489-1 (Contig-U09489-1Q) /CSM_Contig/Contig-U09489-1Q.Seq.d
         (596 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595...   662   0.0    3
(AU074606) Dictyostelium discoideum slug cDNA, clone SSL361.      476   e-130  1
(AU038697) Dictyostelium discoideum slug cDNA, clone SSL361.      396   e-115  2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    38   0.024  9
(EK127276) 1092990501278 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.36   1
(U39743) Caenorhabditis elegans cosmid R173, complete sequence.    46   1.4    1
(CU633329) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.4    1
(AC006724) Caenorhabditis elegans clone Y1B5, *** SEQUENCING...    46   1.4    1
(CT306081) Sus scrofa genomic clone CH242-369M12, genomic su...    46   1.4    1
(EL926599) NY4ThAmp1_4_D02.b1_A039 NY4 theronts: amplified l...    46   1.4    1
(AM489368) Vitis vinifera contig VV78X031649.14, whole genom...    36   1.6    4
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    32   3.4    7
(BX000524) Zebrafish DNA sequence from clone DKEY-10H3 in li...    44   5.6    1
(AP006715) Porphyra yezoensis chloroplast DNA, complete genome.    44   5.6    1
(AC149479) Populus trichocarpa clone Pop1-017N13, complete s...    44   5.6    1
(AC149428) Populus trichocarpa clone Pop1-080J15, complete s...    44   5.6    1
(AC149297) Populus trichocarpa clone Pop1-015H07, complete s...    44   5.6    1
(CU302271) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.6    1
(AP009095) Marchantia polymorpha genomic DNA, chromosome Y, ...    44   5.6    1
(AM640231) Entamoeba dispar GSS, clone dispar72f06.q1k.            44   5.6    1
(EG902285) EST_ssal_evf_40957 ssalevf mixed_tissue Salmo sal...    44   5.6    1
(EG902282) EST_ssal_evf_40956 ssalevf mixed_tissue Salmo sal...    44   5.6    1
(EG876217) EST_ssal_eve_19955 ssaleve thyroid Salmo salar cD...    44   5.6    1
(EG876216) EST_ssal_eve_19954 ssaleve thyroid Salmo salar cD...    44   5.6    1
(EG846988) EST_ssal_eve_881 ssaleve thyroid Salmo salar cDNA...    44   5.6    1
(EG843371) EST_ssal_eve_36327 ssaleve thyroid Salmo salar cD...    44   5.6    1
(DT592536) pam01-26ms4-b04 Pam01 Persea americana cDNA clone...    44   5.6    1
(AC167269) Bos taurus clone CH240-196D11, WORKING DRAFT SEQU...    40   5.8    5
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    34   7.5    6
(EJ927426) 1093018788425 Global-Ocean-Sampling_GS-30-02-01-1...    36   9.1    2
(AC014163) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    42   9.3    3
(DU473484) 1098415701648 CHORI-243 Ovis aries genomic clone ...    36   9.8    2

>(AC115592) Dictyostelium discoideum chromosome 2 map 1-125959 strain
             AX4, complete sequence.
          Length = 125958

 Score =  662 bits (334), Expect(3) = 0.0
 Identities = 334/334 (100%)
 Strand = Plus / Plus


Query: 1     atttggtgatcgatttaatcaagcactatcggttggttgtattccaccaaaagttactca 60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58456 atttggtgatcgatttaatcaagcactatcggttggttgtattccaccaaaagttactca 58515


Query: 61    tttaaagtttggtagatgttttaatcaacctttaaaacttggtgtaattcctgattcttg 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58516 tttaaagtttggtagatgttttaatcaacctttaaaacttggtgtaattcctgattcttg 58575


Query: 121   tacttttattcaatttggttcacaatttaatcaatcattagaaccaatggttataccatc 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58576 tacttttattcaatttggttcacaatttaatcaatcattagaaccaatggttataccatc 58635


Query: 181   atcagttaaagaattaatatttggttcacaatataatcaacctacaattcaaggcacatt 240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58636 atcagttaaagaattaatatttggttcacaatataatcaacctacaattcaaggcacatt 58695


Query: 241   tcctgatagaattaagaagttggtattctctgatgaccatgatcagtttcattcacaaga 300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58696 tcctgatagaattaagaagttggtattctctgatgaccatgatcagtttcattcacaaga 58755


Query: 301   tacattaccaaaatctttagtacatttagaattt 334
             ||||||||||||||||||||||||||||||||||
Sbjct: 58756 tacattaccaaaatctttagtacatttagaattt 58789

 Score =  396 bits (200), Expect(3) = 0.0
 Identities = 200/200 (100%)
 Strand = Plus / Plus


Query: 346   catttctctctagagttaattagtcaattatatccagaacaatccataaaatactgggta 405
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60072 catttctctctagagttaattagtcaattatatccagaacaatccataaaatactgggta 60131


Query: 406   caatatagattcaactctaaaagtaattcatttggttatccaaaattcattggtgtttca 465
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60132 caatatagattcaactctaaaagtaattcatttggttatccaaaattcattggtgtttca 60191


Query: 466   actcttatggatcctgatatgggcttccttgttaatgataccattattttaaatgtttca 525
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60192 actcttatggatcctgatatgggcttccttgttaatgataccattattttaaatgtttca 60251


Query: 526   attttacaacttaaaccaat 545
             ||||||||||||||||||||
Sbjct: 60252 attttacaacttaaaccaat 60271

 Score = 52.0 bits (26), Expect(3) = 0.0
 Identities = 26/26 (100%)
 Strand = Plus / Plus


Query: 554   gttttggatttttataaaattagtcc 579
             ||||||||||||||||||||||||||
Sbjct: 60280 gttttggatttttataaaattagtcc 60305

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 659,435,214
Number of extensions: 38639837
Number of successful extensions: 3005211
Number of sequences better than 10.0: 33
Length of query: 596
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 573
Effective length of database: 93,106,754,628
Effective search space: 53350170401844
Effective search space used: 53350170401844
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.26
Homology vs Protein 
Query= Contig-U09489-1 (Contig-U09489-1Q) /CSM_Contig/Contig-U09489-1Q.Seq.d
         (596 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8T126) RecName: Full=Probable inactive serine/threonine-protei...   233   3e-60
AC116305_54(AC116305|pid:none) Dictyostelium discoideum chromoso...   106   5e-22
(Q5UPD4) RecName: Full=Putative F-box and FNIP repeat-containing...    92   8e-18
AC116305_136(AC116305|pid:none) Dictyostelium discoideum chromos...    82   1e-14
AC116960_34(AC116960|pid:none) Dictyostelium discoideum chromoso...    79   1e-13
AC116960_62(AC116960|pid:none) Dictyostelium discoideum chromoso...    75   1e-12
AC117176_63(AC117176|pid:none) Dictyostelium discoideum chromoso...    75   1e-12
(Q54JC0) RecName: Full=Calmodulin-binding protein CmbB; AltName:...    71   2e-11
(Q86AH2) RecName: Full=FNIP repeat-containing protein DDB_G02719...    70   6e-11
AC116957_103(AC116957|pid:none) Dictyostelium discoideum chromos...    69   1e-10
AC116986_27(AC116986|pid:none) Dictyostelium discoideum chromoso...    69   1e-10
AC116957_83(AC116957|pid:none) Dictyostelium discoideum chromoso...    68   2e-10
AC116984_119(AC116984|pid:none) Dictyostelium discoideum chromos...    68   2e-10
AC117267_6(AC117267|pid:none) Dictyostelium discoideum chromosom...    68   2e-10
(Q5UR85) RecName: Full=Putative FNIP repeat-containing protein R...    67   3e-10
(Q556H2) RecName: Full=FNIP repeat-containing protein DDB_G02740...    67   3e-10
AC116984_124(AC116984|pid:none) Dictyostelium discoideum chromos...    65   2e-09
(Q54FS1) RecName: Full=FNIP repeat-containing protein DDB_G02906...    64   3e-09
(Q54FS2) RecName: Full=FNIP repeat-containing protein DDB_G02906...    63   5e-09
AC116977_30(AC116977|pid:none) Dictyostelium discoideum chromoso...    63   7e-09
(Q1ZXK1) RecName: Full=FNIP repeat-containing protein DDB_G02773...    63   7e-09
(Q5UQL2) RecName: Full=Putative F-box and FNIP repeat-containing...    62   1e-08
AP008218_884(AP008218|pid:none) Oryza sativa (japonica cultivar-...    57   4e-07
AC116984_17(AC116984|pid:none) Dictyostelium discoideum chromoso...    55   1e-06
AC115598_30(AC115598|pid:none) Dictyostelium discoideum chromoso...    54   3e-06
AC117075_45(AC117075|pid:none) Dictyostelium discoideum chromoso...    54   4e-06
AF302663_1(AF302663|pid:none) Arabidopsis thaliana ubiquitin-spe...    53   6e-06
AF360198_1(AF360198|pid:none) Arabidopsis thaliana putative ubiq...    53   6e-06
(Q9FPT1) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 12;...    53   6e-06
AP002543_13(AP002543|pid:none) Arabidopsis thaliana genomic DNA,...    53   6e-06
AM429176_1(AM429176|pid:none) Vitis vinifera contig VV78X153344....    53   6e-06
(Q94481) RecName: Full=FNIP repeat-containing protein cigB;            52   2e-05
U66528_1(U66528|pid:none) Dictyostelium discoideum CigB (cigB) m...    52   2e-05
AC016795_20(AC016795|pid:none) Arabidopsis thaliana chromosome I...    51   3e-05
AK226819_1(AK226819|pid:none) Arabidopsis thaliana mRNA for ubiq...    51   3e-05
(Q84WU2) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 13;...    51   3e-05
AC115684_4(AC115684|pid:none) Dictyostelium discoideum chromosom...    50   6e-05
AC115604_12(AC115604|pid:none) Dictyostelium discoideum chromoso...    49   8e-05
AC007070_8(AC007070|pid:none) Arabidopsis thaliana chromosome 2 ...    49   1e-04
(Q5UP38) RecName: Full=Putative FNIP repeat-containing protein L...    49   1e-04
FB882703_1(FB882703|pid:none) Sequence 101976 from Patent WO2008...    48   2e-04
AP004664_14(AP004664|pid:none) Oryza sativa Japonica Group genom...    48   2e-04
AC115612_2(AC115612|pid:none) Dictyostelium discoideum chromosom...    47   3e-04
AB238681_1(AB238681|pid:none) Arabidopsis thaliana CMS1 mRNA for...    47   4e-04
DQ536150_1(DQ536150|pid:none) Populus trichocarpa clone 5737864 ...    47   4e-04
(Q5UPW6) RecName: Full=Putative FNIP repeat-containing protein L...    47   5e-04
AC116987_15(AC116987|pid:none) Dictyostelium discoideum chromoso...    47   5e-04
AC116305_99(AC116305|pid:none) Dictyostelium discoideum chromoso...    47   5e-04
AC117076_9(AC117076|pid:none) Dictyostelium discoideum chromosom...    46   7e-04
AC148405_25(AC148405|pid:none) Medicago truncatula clone mth2-37...    46   9e-04
AC116957_6(AC116957|pid:none) Dictyostelium discoideum chromosom...    45   0.001
AC116982_8(AC116982|pid:none) Dictyostelium discoideum chromosom...    45   0.001
AC116032_2(AC116032|pid:none) Dictyostelium discoideum chromosom...    45   0.001
AC116957_4(AC116957|pid:none) Dictyostelium discoideum chromosom...    45   0.002
AC116957_13(AC116957|pid:none) Dictyostelium discoideum chromoso...    44   0.003
AC114265_1(AC114265|pid:none) Dictyostelium discoideum chromosom...    44   0.003
AC114258_18(AC114258|pid:none) Dictyostelium discoideum chromoso...    44   0.003
CP000745_1662(CP000745|pid:none) Methanococcus maripaludis C7, c...    43   0.006
CP001325_75(CP001325|pid:none) Micromonas sp. RCC299 chromosome ...    42   0.013
CP000867_229(CP000867|pid:none) Methanococcus maripaludis C6, co...    41   0.022
AC115680_16(AC115680|pid:none) Dictyostelium discoideum chromoso...    40   0.037
A84455(A84455) hypothetical protein At2g04190 [imported] - Arabi...    39   0.082
AY219131_1(AY219131|pid:none) Arabidopsis thaliana hypothetical ...    39   0.11
AC120533_15(AC120533|pid:none) Oryza sativa (japonica cultivar-g...    36   0.70
FB782024_1(FB782024|pid:none) Sequence 1297 from Patent WO200803...    36   0.70
AC115682_10(AC115682|pid:none) Dictyostelium discoideum chromoso...    36   0.70
FB782020_1(FB782020|pid:none) Sequence 1293 from Patent WO200803...    36   0.70
AY376870_1(AY376870|pid:none) Gallus gallus clone UBP75b UBP mRN...    35   1.2
AM477991_3(AM477991|pid:none) Vitis vinifera contig VV78X079128....    35   1.2
(Q6U7I1) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 7; ...    35   1.2
(Q93009) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 7; ...    35   1.2
AY376869_1(AY376869|pid:none) Gallus gallus clone UBP75a UBP mRN...    35   1.2
AK316441_1(AK316441|pid:none) Homo sapiens cDNA, FLJ79340 comple...    35   1.2
AK302872_1(AK302872|pid:none) Homo sapiens cDNA FLJ52374 complet...    35   1.2
AX134281_1(AX134281|pid:none) Sequence 1 from Patent WO0132696. ...    35   1.2
AK302912_1(AK302912|pid:none) Homo sapiens cDNA FLJ50427 complet...    35   1.2
AF372976_1(AF372976|pid:none) Arabidopsis thaliana AT3g28220/T19...    35   2.0
BC166012_1(BC166012|pid:none) Synthetic construct Mus musculus c...    34   2.7
(Q4VSI4) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 7; ...    34   2.7
AB022216_22(AB022216|pid:none) Arabidopsis thaliana genomic DNA,...    34   2.7
FB882669_1(FB882669|pid:none) Sequence 101942 from Patent WO2008...    34   2.7
CP001331_4(CP001331|pid:none) Micromonas sp. RCC299 chromosome 1...    34   2.7
AY085057_1(AY085057|pid:none) Arabidopsis thaliana clone 125943 ...    34   2.7
AF462862_1(AF462862|pid:none) Arabidopsis thaliana AT3g20360/MQC...    34   3.5
AL137082_1(AL137082|pid:none) Arabidopsis thaliana DNA chromosom...    34   3.5
AB024036_11(AB024036|pid:none) Arabidopsis thaliana genomic DNA,...    34   3.5
AC117072_27(AC117072|pid:none) Dictyostelium discoideum chromoso...    33   4.5
(Q867T7) RecName: Full=NADPH oxidase activator;          Short=N...    33   4.5
AC007289_2(AC007289|pid:none) Arabidopsis thaliana chromosome 2 ...    33   4.5
AM502248_5(AM502248|pid:none) Leishmania infantum chromosome 30.       33   4.5
CP000728_381(CP000728|pid:none) Clostridium botulinum F str. Lan...    33   5.9
AL117195_15(AL117195|pid:none) Caenorhabditis elegans YAC Y57A10...    33   5.9
AL117195_14(AL117195|pid:none) Caenorhabditis elegans YAC Y57A10...    33   5.9
CT005267_5(CT005267|pid:none) Leishmania major strain Friedlin, ...    33   5.9
BC124900_1(BC124900|pid:none) Xenopus laevis hypothetical protei...    33   7.7
AL049482_13(AL049482|pid:none) Arabidopsis thaliana DNA chromoso...    33   7.7

>(Q8T126) RecName: Full=Probable inactive serine/threonine-protein
            kinase fnkC;  &AC115592_14(AC115592|pid:none)
          Length = 1304

 Score =  233 bits (594), Expect = 3e-60
 Identities = 111/111 (100%), Positives = 111/111 (100%)
 Frame = +2

Query: 2    FGDRFNQALSVGCIPPKVTHLKFGRCFNQPLKLGVIPDSCTFIQFGSQFNQSLEPMVIPS 181
            FGDRFNQALSVGCIPPKVTHLKFGRCFNQPLKLGVIPDSCTFIQFGSQFNQSLEPMVIPS
Sbjct: 728  FGDRFNQALSVGCIPPKVTHLKFGRCFNQPLKLGVIPDSCTFIQFGSQFNQSLEPMVIPS 787

Query: 182  SVKELIFGSQYNQPTIQGTFPDRIKKLVFSDDHDQFHSQDTLPKSLVHLEF 334
            SVKELIFGSQYNQPTIQGTFPDRIKKLVFSDDHDQFHSQDTLPKSLVHLEF
Sbjct: 788  SVKELIFGSQYNQPTIQGTFPDRIKKLVFSDDHDQFHSQDTLPKSLVHLEF 838

 Score =  138 bits (348), Expect = 1e-31
 Identities = 67/67 (100%), Positives = 67/67 (100%)
 Frame = +1

Query: 346  HFSLELISQLYPEQSIKYWVQYRFNSKSNSFGYPKFIGVSTLMDPDMGFLVNDTIILNVS 525
            HFSLELISQLYPEQSIKYWVQYRFNSKSNSFGYPKFIGVSTLMDPDMGFLVNDTIILNVS
Sbjct: 1231 HFSLELISQLYPEQSIKYWVQYRFNSKSNSFGYPKFIGVSTLMDPDMGFLVNDTIILNVS 1290

Query: 526  ILQLKPI 546
            ILQLKPI
Sbjct: 1291 ILQLKPI 1297

 Score = 49.7 bits (117), Expect = 6e-05
 Identities = 24/66 (36%), Positives = 40/66 (60%)
 Frame = +1

Query: 349  FSLELISQLYPEQSIKYWVQYRFNSKSNSFGYPKFIGVSTLMDPDMGFLVNDTIILNVSI 528
            + L LI+Q  P +SI+    + F+ K  + GY  FIG+ +L++P+ GFLVN+TI + +
Sbjct: 1095 YKLTLINQKNPNESIQKSSSHTFSIKEFNHGYGSFIGLFSLLNPNNGFLVNNTIKVRIDA 1154

Query: 529  LQLKPI 546
                P+
Sbjct: 1155 APTSPL 1160

 Score = 40.0 bits (92), Expect = 0.048
 Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 30/128 (23%)
 Frame = +2

Query: 41  IPPKVTHLKFGRCFNQPLKLGVIPDSCTFIQFGSQFN----------------------- 151
           IP  +T LKF   FN  +   +  DS   ++F   FN
Sbjct: 451 IPNYITTLKFQESFNMEIVNEMFTDSIVHLEFPQGFNKLDFNELPDFLSTLIYHGEFNIE 510

Query: 152 -----QSLEPMVIPSSVKELIFGSQYNQPTIQGTFPDRIKKLVFSDD--HDQFHSQDTLP 310
                +SL+P  IP S+  L     YN    + + PD+ K L+   D   ++  S   LP
Sbjct: 511 SNYHSKSLKPRDIPKSIIHLQL-PNYNLKIRRNSIPDQTKFLILGSDLGENEIQSLINLP 569

Query: 311 KSLVHLEF 334
            S++ LEF
Sbjct: 570 PSIIDLEF 577

 Score = 39.7 bits (91), Expect = 0.063
 Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
 Frame = +2

Query: 50   KVTHLKFGRCFNQPLKLGVIPDSCTFIQFGSQFNQSLEPMVIPSSVKELIFGSQYNQPTI 229
            K+T   F   F  PLK+  +P S T ++   Q+N  LE   IPS VK L+ GS +
Sbjct: 869  KLTTFIFNGYFTVPLKVFDLPLSITHLEL-PQYNDILEKDCIPSFVKTLVLGSSFTIIES 927

Query: 230  QGTFPDRIKKLVFSDDHDQFH--SQDTLPKSLVHLEFXXXXISL 355
                P  I  L F  D +     +Q  +P +   L+     ISL
Sbjct: 928  FINLPKSITSLSFGCDENVIGLINQSLIPPNCNTLKINGQSISL 971

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 885,281,156
Number of extensions: 15641077
Number of successful extensions: 27735
Number of sequences better than 10.0: 96
Number of HSP's gapped: 27478
Number of HSP's successfully gapped: 304
Length of query: 198
Length of database: 1,040,966,779
Length adjustment: 122
Effective length of query: 76
Effective length of database: 650,044,009
Effective search space: 49403344684
Effective search space used: 49403344684
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.89  gvh: 0.35  alm: 0.38  top: 0.70  tms: 0.00  mit: 0.26  mip: 0.05
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for Contig-U09489-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0