>Contig-U01577-1 (Contig-U01577-1Q) /CSM_Contig/Contig-U01577-1Q.Seq.d
GAAAAGATGAAAATAAAATTTATTATTTTAATTTTATTTAATTTAATATT
TAAAATTAAATGTAATGATGATTTTAAATACTATGCAGCAAGAACTGATA
CAAGAAGATGTGATAATTATGAAAAACCTGGATGTGGTGGTTATTTTGTA
AAGGAATTAAATACAGGTAAAGAAGAGATGGAAATTTATGTTTCAGAAAT
TAATCAACAAGATGATATTGGTGTTGTAAATGAAAATAAAATTAGAAATG
CTCCACCTTATCATATAGTTTTTAGAGGTATTTTAAATAGAGATTATCAA
AACGATGTTGATACTGCAGAAGCTCACAATATCTATAGATTAATGCCAAT
GCCTGGTAAAACTTTCAATTTAACAAAAGATACCCAATTTTATACTTTGG
GTAATCCTCATAATTTATTAGTACCTCAATTAAATGAAAATGATGAAAA-
---------ACAATTGGGGATATTATTATCNGAATCCGTTTCTGTAATCA
GTCCCATACCAATTATGAACAACCGATATTATGATGAAAATTATGGAATT
ATAAAAAATGTAGATTGGAACCCAAAATATGGATATAATATTGATAATTT
ATTTATTAGTTTAACAAATTCAAATAACTGTCCAAAGAAAATTCAAGAAA
TTAGATGTGTATCTGGTTTAATTGCAACATATGTCAGAAGTTTTAATCAT
TGTTATATTTTCTTTGAATGCGCTCCAATATCACCAGAAAAATGTAGTTC
TTCAATTGCCCCAAGTTGTCCAAAGGGTTATAGTTTAACTTCAATACCCT
CGTATCCAAATGGTTGTTTAGTTTTTTATTGTGACCCTTCATTTTTATTT
TTTAATTATTAAAGATAAAAAAAAAATAAAAAATAAAAAATAAAATAAAA
AAAACAAATAAAAAAAAGTAAGGAAAATAAATAATATAATTAATTTTTAC

est1=SSB822F,1,450
est2=SSB822Z,451,919
est3=SSA635Z,494,942

EKMKIKFIILILFNLIFKIKCNDDFKYYAARTDTRRCDNYEKPGCGGYFVKELNTGKEEM
EIYVSEINQQDDIGVVNENKIRNAPPYHIVFRGILNRDYQNDVDTAEAHNIYRLMPMPGK
TFNLTKDTQFYTLGNPHNLLVPQLNENDE---

---QLGILLSESVSVISPIPIMNNRYYDENYGIIKNVDWNPKYGYNIDNLFISLTNSNNC
PKKIQEIRCVSGLIATYVRSFNHCYIFFECAPISPEKCSSSIAPSCPKGYSLTSIPSYPN
GCLVFYCDPSFLFFNY*r*kknkk*kik*kkqikkskenk*yn*fl

Frame A:
EKMKIKFIILILFNLIFKIKCNDDFKYYAARTDTRRCDNYEKPGCGGYFVKELNTGKEEM
EIYVSEINQQDDIGVVNENKIRNAPPYHIVFRGILNRDYQNDVDTAEAHNIYRLMPMPGK
TFNLTKDTQFYTLGNPHNLLVPQLNENDE---

---tigdiiixirfcnqshtnyeqpil**klwnykkcrlepkiwi*y**fiy*fnkfk*l
skensrn*mciwfncnicqkf*sllyfl*mrsnitrkm*ffncpklskgl*fnfntlvsk
wlfsfll*pfifif*llkikkk*kiknkikktnkkk*gk*ii*lif

Frame B:
kr*k*nllf*fyli*ylklnvmmilntmqqeliqedviimknldvvvil*rn*iqvkkrw
kfmfqklinkmilvl*mkiklemlhlii*flevf*ieiiktmlilqkltisid*cqclvk
lsi*qkipnfilwviliiy*yln*mkmmk---

---QLGILLSESVSVISPIPIMNNRYYDENYGIIKNVDWNPKYGYNIDNLFISLTNSNNC
PKKIQEIRCVSGLIATYVRSFNHCYIFFECAPISPEKCSSSIAPSCPKGYSLTSIPSYPN
GCLVFYCDPSFLFFNY*r*kknkk*kik*kkqikkskenk*yn*fl

Frame C:
kdenkiyyfnfi*fni*n*m***f*ilcskn*ykkm**l*ktwmwwlfckgikyr*rrdg
nlcfrn*str*ywcck*k*n*kcstlsysf*ryfk*rlskrc*ycrssqyl*inanaw*n
fqfnkrypilyfg*ss*fistsik*k**k---

---nwgyyyxnpfl*svpyql*ttdimmkimel*km*igtqnmdiiliiyllv*qiqitv
qrkfkkldvylv*lqhmsevliivifslnalqyhqknvvlqlpqvvqrviv*lqypriqm
vv*ffivtlhfyfliikdkkkiknkk*nkknk*kkvrkinniinfy

Query= Contig-U01577-1 (Contig-U01577-1Q)
/CSM_Contig/Contig-U01577-1Q.Seq.d
         (950 letters)

Database: CSM
           8361 sequences; 7,895,291 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01577-1 (Contig-U01577-1Q) /CSM_Contig/Conti...  1481  0.0
Contig-U10052-1 (Contig-U10052-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12214-1 (Contig-U12214-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U12095-1 (Contig-U12095-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U12091-1 (Contig-U12091-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U06982-1 (Contig-U06982-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U12305-1 (Contig-U12305-1Q) /CSM_Contig/Conti...    36  0.093
Contig-U12279-1 (Contig-U12279-1Q) /CSM_Contig/Conti...    36  0.093
Contig-U11876-1 (Contig-U11876-1Q) /CSM_Contig/Conti...    36  0.093
Contig-U11848-1 (Contig-U11848-1Q) /CSM_Contig/Conti...    36  0.093

>Contig-U01577-1 (Contig-U01577-1Q) /CSM_Contig/Contig-U01577-1Q.Seq.d
          Length = 950

 Score = 1481 bits (747), Expect = 0.0
 Identities = 780/780 (100%)
 Strand = Plus / Plus

                                                                       
Query: 62  gtaatgatgattttaaatactatgcagcaagaactgatacaagaagatgtgataattatg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  gtaatgatgattttaaatactatgcagcaagaactgatacaagaagatgtgataattatg 121

                                                                       
Query: 122 aaaaacctggatgtggtggttattttgtaaaggaattaaatacaggtaaagaagagatgg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 aaaaacctggatgtggtggttattttgtaaaggaattaaatacaggtaaagaagagatgg 181

                                                                       
Query: 182 aaatttatgtttcagaaattaatcaacaagatgatattggtgttgtaaatgaaaataaaa 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 aaatttatgtttcagaaattaatcaacaagatgatattggtgttgtaaatgaaaataaaa 241

                                                                       
Query: 242 ttagaaatgctccaccttatcatatagtttttagaggtattttaaatagagattatcaaa 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ttagaaatgctccaccttatcatatagtttttagaggtattttaaatagagattatcaaa 301

                                                                       
Query: 302 acgatgttgatactgcagaagctcacaatatctatagattaatgccaatgcctggtaaaa 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 acgatgttgatactgcagaagctcacaatatctatagattaatgccaatgcctggtaaaa 361

                                                                       
Query: 362 ctttcaatttaacaaaagatacccaattttatactttgggtaatcctcataatttattag 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ctttcaatttaacaaaagatacccaattttatactttgggtaatcctcataatttattag 421

                                                                       
Query: 422 tacctcaattaaatgaaaatgatgaaaannnnnnnnnnacaattggggatattattatcn 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tacctcaattaaatgaaaatgatgaaaannnnnnnnnnacaattggggatattattatcn 481

                                                                       
Query: 482 gaatccgtttctgtaatcagtcccataccaattatgaacaaccgatattatgatgaaaat 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gaatccgtttctgtaatcagtcccataccaattatgaacaaccgatattatgatgaaaat 541

                                                                       
Query: 542 tatggaattataaaaaatgtagattggaacccaaaatatggatataatattgataattta 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tatggaattataaaaaatgtagattggaacccaaaatatggatataatattgataattta 601

                                                                       
Query: 602 tttattagtttaacaaattcaaataactgtccaaagaaaattcaagaaattagatgtgta 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tttattagtttaacaaattcaaataactgtccaaagaaaattcaagaaattagatgtgta 661

                                                                       
Query: 662 tctggtttaattgcaacatatgtcagaagttttaatcattgttatattttctttgaatgc 721
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tctggtttaattgcaacatatgtcagaagttttaatcattgttatattttctttgaatgc 721

                                                                       
Query: 722 gctccaatatcaccagaaaaatgtagttcttcaattgccccaagttgtccaaagggttat 781
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 gctccaatatcaccagaaaaatgtagttcttcaattgccccaagttgtccaaagggttat 781

                                                                       
Query: 782 agtttaacttcaataccctcgtatccaaatggttgtttagttttttattgtgacccttca 841
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 agtttaacttcaataccctcgtatccaaatggttgtttagttttttattgtgacccttca 841


 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 918 gtaaggaaaataaataatataattaatttttac 950
           |||||||||||||||||||||||||||||||||
Sbjct: 918 gtaaggaaaataaataatataattaatttttac 950


>Contig-U10052-1 (Contig-U10052-1Q) /CSM_Contig/Contig-U10052-1Q.Seq.d
          Length = 749

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 426 tcaattaaatgaaaatgatgaaaa 449
           ||||||||||||| ||||||||||
Sbjct: 526 tcaattaaatgaagatgatgaaaa 549


>Contig-U12214-1 (Contig-U12214-1Q) /CSM_Contig/Contig-U12214-1Q.Seq.d
          Length = 2445

 Score = 38.2 bits (19), Expect = 0.024
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Minus

                                       
Query: 924  aaaataaataat-ataattaattttta 949
            |||||||||||| ||||||||||||||
Sbjct: 2401 aaaataaataattataattaattttta 2375


  Database: CSM
    Posted date:  Jun 7, 2004  8:33 AM
  Number of letters in database: 7,895,291
  Number of sequences in database:  8361
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,922
Number of Sequences: 8361
Number of extensions: 25922
Number of successful extensions: 2830
Number of sequences better than 10.0: 323
length of query: 950
length of database: 7,895,291
effective HSP length: 16
effective length of query: 934
effective length of database: 7,761,515
effective search space: 7249255010
effective search space used: 7249255010
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)

Query= Contig-U01577-1 (Contig-U01577-1Q) /CSM_Contig/Contig-U01577-1Q.Seq.d
         (950 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU036923) Dictyostelium discoideum slug cDNA, clone SSB822.      751   0.0    1
(C83921) Dictyostelium discoideum slug cDNA, clone SSA635.        591   e-176  3
(AU071576) Dictyostelium discoideum slug cDNA, clone SSB822.      319   1e-82  1
(CU640382) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   0.032  8
(AC005507) Plasmodium falciparum chromosome 12 clone PFYACB8...    34   0.040  10
(EK359345) 1095468894898 Global-Ocean-Sampling_GS-31-01-01-1...    52   0.040  1
(CV763668) FGAS058051 Triticum aestivum FGAS: Library 2 Gate...    52   0.040  1
(AC005506) Plasmodium falciparum chromosome 12 clone PFYAC35...    40   0.045  8
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4...    36   0.061  9
(AC179611) Strongylocentrotus purpuratus clone R3-1028L01, W...    38   0.067  8
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ...    34   0.070  10
(AL929023) Zebrafish DNA sequence from clone DKEY-98G12 in l...    38   0.077  7
(AZ682550) ENTMV82TR Entamoeba histolytica Sheared DNA Entam...    36   0.097  3
(Z98551) Plasmodium falciparum MAL3P6.                             34   0.099  10
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    44   0.10   9
(CP000552) Prochlorococcus marinus str. MIT 9515, complete g...    36   0.14   17
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    38   0.15   12
(AC133817) Rattus norvegicus clone CH230-522J8, *** SEQUENCI...    50   0.16   1
(AC111390) Rattus norvegicus clone CH230-143P1, *** SEQUENCI...    50   0.16   1
(AC095239) Rattus norvegicus clone CH230-9H8, *** SEQUENCING...    50   0.16   1
(FD724478) CAAA6902.rev CAAA Petromyzon marinus Petromyzon m...    50   0.16   1
(EX289224) 1577086_5_P04_002 PY06 Carica papaya cDNA, mRNA s...    50   0.16   1
(AC180427) Strongylocentrotus purpuratus clone R3-3103H10, W...    38   0.16   7
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6...    32   0.20   11
(AE014850) Plasmodium falciparum 3D7 chromosome 12, section ...    36   0.20   10
(CR538723) M.truncatula DNA sequence from clone MTH2-27D24 o...    40   0.20   3
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    36   0.27   18
(CT573329) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   0.28   5
(DU976219) 399274 Tomato MboI BAC Library Solanum lycopersic...    40   0.32   3
(CP000727) Clostridium botulinum A str. Hall, complete genome.     40   0.34   17
(AC192931) Pan troglodytes BAC clone CH251-578O18 from chrom...    46   0.39   6
(AC184468) Strongylocentrotus purpuratus clone R3-60P16, WOR...    34   0.40   8
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    36   0.41   18
(CP000726) Clostridium botulinum A str. ATCC 19397, complete...    40   0.45   17
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ...    34   0.51   11
(AX458544) Sequence 90 from Patent WO0246454.                      38   0.54   5
(AC005308) Plasmodium falciparum chromosome 12 clone PFYAC49...    36   0.55   8
(AC165693) Bos taurus clone CH240-166I19, WORKING DRAFT SEQU...    38   0.56   5
(EJ183151) 1092344136133 Global-Ocean-Sampling_GS-27-01-01-1...    38   0.59   2
(AM422018) Candidatus Phytoplasma australiense complete genome.    34   0.59   17
(ER465325) 1092963919953 Global-Ocean-Sampling_GS-35-01-01-1...    48   0.62   1
(CL018833) CH216-4C13_RM1.1 CH216 Xenopus (Silurana) tropica...    48   0.62   1
(BZ082213) llc04f12.b1 B.oleracea002 Brassica oleracea genom...    48   0.62   1
(AX344550) Sequence 1 from Patent WO0200932.                       34   0.69   13
(AC126076) Rattus norvegicus clone CH230-143P6, *** SEQUENCI...    42   0.70   5
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    46   0.73   9
(Z98547) Plasmodium falciparum MAL3P3.                             42   0.84   5
(AL049180) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    32   0.88   9
(AC004709) Plasmodium falciparum chromosome 12, *** SEQUENCI...    32   0.89   10
(AC005505) Plasmodium falciparum chromosome 12 clone PFYAC18...    36   0.89   9
(AC232701) Solanum lycopersicum chromosome 05 clone C05HBa00...    40   0.92   4
(AJ938182) Staphylococcus aureus RF122 complete genome.            34   0.97   25
(BH131361) ENTON33TF Entamoeba histolytica Sheared DNA Entam...    36   1.1    3
(AC224858) Bos taurus clone CH240-474L8, WORKING DRAFT SEQUE...    38   1.1    4
(CU695142) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   1.1    5
(AE014846) Plasmodium falciparum 3D7 chromosome 12, section ...    40   1.2    8
(AC146590) Medicago truncatula chromosome 8 clone mth2-145p1...    36   1.3    2
(AC207601) Medicago truncatula chromosome 2 BAC clone mth2-4...    32   1.3    2
(AC149127) Medicago truncatula clone mth2-108o17, complete s...    32   1.3    2
(AE014836) Plasmodium falciparum 3D7 chromosome 11 section 1...    34   1.4    11
(AX344564) Sequence 15 from Patent WO0200932.                      32   1.5    14
(AJ758388) Gerbera hybrid cv. 'Terra Regina' EST, clone G000...    40   1.5    2
(AM463302) Vitis vinifera contig VV78X190405.10, whole genom...    34   1.5    5
(AM484412) Vitis vinifera contig VV78X083641.12, whole genom...    42   1.5    3
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    36   1.6    10
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    36   1.6    10
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    36   1.6    10
(EE211296) b1f19z2.r1 Danio rerio 12am (night) eye/brain cDN...    36   1.7    2
(BX005408) Zebrafish DNA sequence from clone DKEY-156H23 in ...    38   1.7    5
(AJ759255) Gerbera hybrid cv. 'Terra Regina' EST, clone G000...    40   1.7    2
(AC079152) Homo sapiens chromosome UNK clone RP11-181J6, ***...    36   1.7    6
(DE869253) Macropus eugenii DNA, BAC clone: MEB1-038J14_R, 3...    36   1.8    2
(AX345977) Sequence 1048 from Patent WO0200928.                    40   1.8    3
(EJ113770) 1092343248999 Global-Ocean-Sampling_GS-27-01-01-1...    36   1.8    2
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    34   1.8    17
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com...    34   1.8    17
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    32   1.9    14
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    32   1.9    9
(CU861475) Zebrafish DNA sequence from clone CH73-99D15 in l...    40   1.9    6
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    38   2.1    16
(AM464622) Vitis vinifera, whole genome shotgun sequence, co...    36   2.1    4
(EJ056373) 1095456031156 Global-Ocean-Sampling_GS-26-01-01-1...    42   2.1    2
(AM643066) Entamoeba dispar GSS, clone dispar102a01.p1k.           38   2.1    2
(EJ981478) 1093022157176 Global-Ocean-Sampling_GS-30-02-01-1...    42   2.1    2
(EJ922793) 1093018768290 Global-Ocean-Sampling_GS-30-02-01-1...    38   2.2    2
(EJ351098) 1092963588555 Global-Ocean-Sampling_GS-28-01-01-1...    36   2.2    2
(DD010736) Diagnosis of known genetic Parameters within the ...    38   2.2    12
(AC223051) Bos taurus clone CH240-431B7, WORKING DRAFT SEQUE...    38   2.2    3
(AM285302) Spiroplasma citri GII3-3X chromosome, contig Cont...    34   2.3    8
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1...    32   2.4    9
(AC149055) Mus musculus BAC clone RP23-358K1 from chromosome...    46   2.5    1
(AC147039) Pan troglodytes BAC clone RP43-117G22 from chromo...    46   2.5    1
(DL342016) METHODS FOR ANALYZING GENES OF INDUSTRIAL YEASTS.       46   2.5    1
(DJ208465) Method for identification of useful proteins deri...    46   2.5    1
(AC151996) Mus musculus chromosome 7 clone RP23-165J5, *** S...    46   2.5    1
(CU928922) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.5    1
(CU463811) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.5    1
(AC021477) Mus musculus clone RP23-28D21, WORKING DRAFT SEQU...    46   2.5    1
(AC020841) Mus musculus clone CT7-8N15, WORKING DRAFT SEQUEN...    46   2.5    1
(AZ991330) 2M0275N22F Mouse 10kb plasmid UUGC2M library Mus ...    46   2.5    1
(EJ846853) 1093017859728 Global-Ocean-Sampling_GS-30-02-01-1...    46   2.5    1
(CW170773) 104_581_11155387_148_36522_076 Sorghum methylatio...    46   2.5    1
(CW170772) 104_581_11155387_116_36521_076 Sorghum methylatio...    46   2.5    1
(CT075862) Sus scrofa genomic clone CH242-62A22, genomic sur...    46   2.5    1
(BZ628453) ih60c07.g1 WGS-SbicolorF (DH5a methyl filtered) S...    46   2.5    1
(CV852977) gonad_EST00453 Embryonic gonad cDNA Library Gallu...    46   2.5    1
(CN759644) ID0AAA26AE12RM1 ApMS Acyrthosiphon pisum cDNA clo...    46   2.5    1
(CN755031) ID0AAA14CG09RM1 ApMS Acyrthosiphon pisum cDNA clo...    46   2.5    1
(EY196309) H10_F9_090 Cotton ovule and fiber 3-5 days post a...    46   2.5    1
(EX170531) H10_F9_090 Cotton 1-14 day post anthesis Lambda Z...    46   2.5    1
(CR853297) Zebrafish DNA sequence from clone DKEYP-118B3 in ...    36   2.5    6
(AC174550) Strongylocentrotus purpuratus clone R3-3089B2, WO...    36   2.6    6
(AJ404228) Saccharomyces douglasii mitochondrial tRNA gene c...    34   2.8    4
(EU569764) Phthonandria atrilineata mitochondrion, complete ...    38   2.9    4
(AC006280) Plasmodium falciparum chromosome 12 clone PFYAC72...    34   2.9    8
(AC124482) Mus musculus BAC clone RP24-120B3 from chromosome...    34   3.1    8
(AX458581) Sequence 127 from Patent WO0246454.                     40   3.3    3
(AX347144) Sequence 2215 from Patent WO0200928.                    40   3.3    3
(ED789770) GM_WBb0172I19.f GM_WBb Glycine max genomic clone ...    36   3.5    3
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    34   3.6    8
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co...    34   3.6    7
(AC109647) Rattus norvegicus clone CH230-2N3, WORKING DRAFT ...    32   3.9    9
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    34   4.1    9
(AX392734) Sequence 24 from Patent WO0212526.                      40   4.5    6
(AR707081) Sequence 24 from patent US 6933145.                     40   4.5    6
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ...    32   4.5    10
(AC024465) Homo sapiens clone RP11-433B21, WORKING DRAFT SEQ...    36   4.5    7
(AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6...    36   4.5    10
(AC141213) Rattus norvegicus clone CH230-17A12, WORKING DRAF...    32   4.6    2
(AL807234) Mouse DNA sequence from clone RP23-293E12 on chro...    34   4.6    2
(AC119694) Rattus norvegicus clone CH230-191D24, WORKING DRA...    34   4.6    2
(AL672152) Mouse DNA sequence from clone RP23-426A16 on chro...    42   4.6    5
(AC218558) Bos taurus clone CH240-312C23, WORKING DRAFT SEQU...    32   4.6    2
(AC172288) Bos taurus clone CH240-202D21, WORKING DRAFT SEQU...    32   4.7    2
(AX344558) Sequence 9 from Patent WO0200932.                       38   4.7    10
(FB571384) Sequence 251 from Patent EP1865317.                     40   4.7    6
(AC202470) Medicago truncatula clone mth2-146d12, WORKING DR...    32   4.7    2
(AC172417) Strongylocentrotus purpuratus clone R3-14H3, WORK...    36   4.8    6
(AC154036) Medicago truncatula clone mth2-123c24, WORKING DR...    32   4.8    2
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117...    32   4.9    9
(BX088595) Zebrafish DNA sequence from clone DKEY-218B7 in l...    42   5.0    5
(BX548174) Prochlorococcus marinus MED4 complete genome.           34   5.1    20
(AX344555) Sequence 6 from Patent WO0200932.                       34   5.3    12
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3...    36   5.7    7
(AM462687) Vitis vinifera, whole genome shotgun sequence, co...    38   5.9    3
(AX344569) Sequence 20 from Patent WO0200932.                      38   6.0    8
(AX344559) Sequence 10 from Patent WO0200932.                      36   6.0    8
(EK180505) 1095458118986 Global-Ocean-Sampling_GS-31-01-01-1...    32   6.2    2
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g...    40   6.4    16
(CT433797) Sus scrofa genomic clone CH242-477C12, genomic su...    36   6.5    2
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2...    34   6.5    7
(AC115581) Dictyostelium discoideum chromosome 2 map complem...    36   6.5    4
(AC111110) Mus musculus chromosome 1, clone RP23-201B13, com...    42   6.6    4
(AC124624) Mus musculus chromosome 5, clone RP23-417K9, comp...    34   6.6    8
(FB571381) Sequence 248 from Patent EP1865317.                     32   6.7    9
(FB571325) Sequence 192 from Patent EP1865317.                     32   6.7    9
(CU835319) A BAC library has been constructed from PN40024 g...    30   6.7    3
(AM442720) Vitis vinifera contig VV78X270975.4, whole genome...    32   6.8    5
(EI179590) MUGQ_CH252P187B11T7_CN274_048 CHORI-252 Vervet Mo...    36   6.9    2
(EJ270540) 1095353009890 Global-Ocean-Sampling_GS-27-01-01-1...    40   7.0    2
(AL929239) Zebrafish DNA sequence from clone CH211-112F11 in...    36   7.1    4
(AL034558) Plasmodium falciparum MAL3P2.                           34   7.1    8
(AC202276) Macaca mulatta clone CH250-241L18, WORKING DRAFT ...    38   7.1    5
(AM438584) Vitis vinifera contig VV78X002906.11, whole genom...    34   7.2    5
(BX139672) Danio rerio genomic clone DKEY-88M8, genomic surv...    40   7.2    2
(AL139035) Human DNA sequence from clone RP11-214F16 on chro...    42   7.3    4
(CP000396) Borrelia afzelii PKo plasmid lp60, complete seque...    42   7.3    4
(DJ386701) Diagnosis of Diseases Associated with Metastasis.       34   7.5    5
(AX281497) Sequence 161 from Patent WO0177376.                     34   7.5    5
(AC178390) Strongylocentrotus purpuratus clone R3-3107O18, W...    40   7.5    5
(CP001247) Borrelia afzelii ACA-1 plasmid lp54, complete seq...    42   7.5    4
(EJ328050) 1092963406656 Global-Ocean-Sampling_GS-28-01-01-1...    36   7.6    2
(AC115682) Dictyostelium discoideum chromosome 2 map 4101105...    32   7.6    6
(AC096721) Homo sapiens BAC clone RP11-19C24 from 4, complet...    44   7.7    4
(AC180029) Strongylocentrotus purpuratus clone R3-23N1, WORK...    38   7.7    5
(AC216417) Populus trichocarpa clone POP051-F19, complete se...    34   7.7    8
(DU032897) 14560 Tomato HindIII BAC Library Solanum lycopers...    34   7.8    2
(ER631822) 1093018483152 Global-Ocean-Sampling_GS-36-01-01-2...    34   7.9    2
(EI899445) VUH2-22I9TR VUUBBa (VUH2) Vigna unguiculata genom...    34   7.9    2
(FP104529) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   8.0    6
(AC129459) Rattus norvegicus clone CH230-8H4, *** SEQUENCING...    40   8.1    5
(AZ679385) ENTKJ48TF Entamoeba histolytica Sheared DNA Entam...    36   8.1    2
(BS000595) Pan troglodytes chromosome Y clone:PTB-109N05, co...    40   8.3    2
(BX324202) Zebrafish DNA sequence from clone CH211-158G9 in ...    38   8.3    5
(CU746939) A BAC library has been constructed from PN40024 g...    30   8.5    3
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041...    36   8.5    6
(CU326391) Medicago truncatula chromosome 5 clone mth2-182c4...    36   8.6    9
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5...    40   8.8    8
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    32   9.1    11
(AC222209) Bos taurus clone CH240-412C2, WORKING DRAFT SEQUE...    36   9.3    5
(CU468417) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   9.5    5
(AC185742) Bos taurus clone RP42-280L21, WORKING DRAFT SEQUE...    40   9.5    5
(CS468878) Sequence 69 from Patent EP1748080.                      30   9.5    10
(CS468877) Sequence 68 from Patent EP1748080.                      30   9.5    10
(CS419355) Sequence 69 from Patent WO2006094836.                   30   9.5    10
(CS419354) Sequence 68 from Patent WO2006094836.                   30   9.5    10
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet...    36   9.6    17
(CR753902) Zebrafish DNA sequence from clone CH211-45C16 in ...    44   9.7    1
(BX544884) Zebrafish DNA sequence from clone DKEY-227M3 in l...    44   9.7    1
(AB145084) Homo sapiens DNA, STS on chromosome 8, D8S0574i, ...    44   9.7    1
(AL606965) Mouse DNA sequence from clone RP23-313I15 on chro...    44   9.7    1
(AC157493) Mus musculus BAC clone RP23-321K7 from chromosome...    44   9.7    1
(AC233974) Pan troglodytes chromosome X clone C_AC5138M24 ma...    44   9.7    1
(AC231625) Pan troglodytes chromosome X clone CH251-675C16 m...    44   9.7    1
(CR382126) Kluyveromyces lactis strain NRRL Y-1140 chromosom...    44   9.7    1
(AM485222) Vitis vinifera contig VV78X147327.13, whole genom...    44   9.7    1
(AM452275) Vitis vinifera contig VV78X167860.52, whole genom...    44   9.7    1
(AM440927) Vitis vinifera contig VV78X099288.5, whole genome...    44   9.7    1
(AF008237) Chlamydomonas eugametos mitochondrion, complete g...    44   9.7    1
(DJ462193) Method for analysing genome using microsatellite ...    44   9.7    1
(AX458637) Sequence 183 from Patent WO0246454.                     44   9.7    1
(AC187980) Canis Familiaris chromosome 9, clone XX-458L23, c...    44   9.7    1
(AC186960) Canis Familiaris chromosome 9, clone XX-197N9, co...    44   9.7    1
(AL034557) Plasmodium falciparum MAL4P1.                           44   9.7    1
(AC185338) Nasonia vitripennis  BAC NV_Bb-01N08 (Clemson Uni...    44   9.7    1
(AB257236) Phorinia flava mitochondrial gene for 16S rRNA, p...    44   9.7    1
(AB257235) Phorinia breviata mitochondrial gene for 16S rRNA...    44   9.7    1
(AP005856) Homo sapiens genomic DNA, chromosome 8q24, clone:...    44   9.7    1
(AL390060) Human DNA sequence from clone RP11-56H2 on chromo...    44   9.7    1
(AF130866) Homo sapiens chromosome 8 clone GS1-172N13 map q2...    44   9.7    1
(AC158009) Bos taurus clone CH240-181D1, WORKING DRAFT SEQUE...    44   9.7    1
(AC137325) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    44   9.7    1
(AC135471) Rattus norvegicus clone CH230-54J1, *** SEQUENCIN...    44   9.7    1
(AC109371) Rattus norvegicus clone CH230-295I21, *** SEQUENC...    44   9.7    1
(AC096418) Rattus norvegicus clone CH230-74I16, WORKING DRAF...    44   9.7    1
(AC096148) Rattus norvegicus clone CH230-10H15, *** SEQUENCI...    44   9.7    1
(AC094666) Rattus norvegicus clone CH230-5F16, *** SEQUENCIN...    44   9.7    1
(AC094663) Rattus norvegicus clone CH230-5F13, *** SEQUENCIN...    44   9.7    1
(CU633653) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.7    1
(AC084812) Homo sapiens chromosome 8 clone RP11-477F6 map 8,...    44   9.7    1
(AC084179) Homo sapiens chromosome 5 clone RP11-148P16 map 5...    44   9.7    1
(AL772309) Mouse DNA sequence *** SEQUENCING CANCELLED *** f...    44   9.7    1
(AC194583) Canis lupus familiaris chromosome 9 clone XX-346L...    44   9.7    1
(AC192106) Gallus gallus chromosome 1 clone CH261-56C11, ***...    44   9.7    1
(AC189731) Canis lupus familiaris clone XX-499D10, *** SEQUE...    44   9.7    1
(AC186218) Canis lupus familiaris chromosome 9 clone XX-137N...    44   9.7    1
(AC183586) Canis lupus familiaris chromosome 9 clone XX-21J1...    44   9.7    1
(AC181239) Strongylocentrotus purpuratus clone R3-4010K2, WO...    44   9.7    1
(AC178323) Strongylocentrotus purpuratus clone R3-3101O01, W...    44   9.7    1
(AC178085) Strongylocentrotus purpuratus clone R3-3060L4, WO...    44   9.7    1
(AC016193) Homo sapiens clone RP11-24B5, WORKING DRAFT SEQUE...    44   9.7    1
(AZ928427) 479.dif09e11.s1 Saccharomyces kluyveri Lachancea ...    44   9.7    1
(AZ525804) 248PbD04 Pb MBN #21 Plasmodium berghei genomic 3'...    44   9.7    1
(AZ525401) 243PbF05 Pb MBN #21 Plasmodium berghei genomic 3'...    44   9.7    1
(FH233448) CHO_OF3102xk08r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   9.7    1
(ER930539) MUGQ_CH252P293G19T7_CP456_074 CHORI-252 Vervet Mo...    44   9.7    1
(ER435896) 1092963796120 Global-Ocean-Sampling_GS-35-01-01-1...    44   9.7    1
(EK558924) 1095518010484 Global-Ocean-Sampling_GS-32-01-01-1...    44   9.7    1
(EJ995207) 1093023082748 Global-Ocean-Sampling_GS-30-02-01-1...    44   9.7    1
(EJ945657) 1093018911704 Global-Ocean-Sampling_GS-30-02-01-1...    44   9.7    1
(EJ161121) 1092344048555 Global-Ocean-Sampling_GS-27-01-01-1...    44   9.7    1
(DU947046) 401949 Tomato EcoRI BAC Library Solanum lycopersi...    44   9.7    1
(DH427184) Oryzias latipes Fosmid clone:GOLWFno844_o23, reve...    44   9.7    1
(DE938465) Macropus eugenii DNA, BAC clone: MEB1-131P18_F, 5...    44   9.7    1
(DE490011) Bombyx mori genomic DNA, Fosmid clone:GBMFno97_d2...    44   9.7    1
(CT430277) Sus scrofa genomic clone CH242-461K7, genomic sur...    44   9.7    1
(CT297237) Sus scrofa genomic clone CH242-16C7, genomic surv...    44   9.7    1
(CE344535) tigr-gss-dog-17000334118486 Dog Library Canis lup...    44   9.7    1
(BZ510865) BOMRU22TR BO_2_3_KB Brassica oleracea genomic clo...    44   9.7    1
(BH605333) BOHNV71TF BOHN Brassica oleracea genomic clone BO...    44   9.7    1
(DC232899) Plasmodium berghei strain ANKA cDNA clone:SG02616...    44   9.7    1
(DC225661) Plasmodium berghei strain ANKA cDNA clone:SG00332...    44   9.7    1
(DC225337) Plasmodium berghei strain ANKA cDNA clone:SG00252...    44   9.7    1
(DC224777) Plasmodium berghei strain ANKA cDNA clone:SG00084...    44   9.7    1
(DC203373) Plasmodium berghei strain ANKA cDNA clone:MG00256...    44   9.7    1
(CO711111) DG14-162p19 DG14-muscle Canis lupus familiaris cD...    44   9.7    1
(CK408178) AUF_IfLvr_217_f19 Ictalurus furcatus liver cDNA l...    44   9.7    1
(CJ454509) Macaca fascicularis mRNA, clone: QflA-20252, 5' e...    44   9.7    1
(BE578758) rk01h10.y1 Meloidogyne javanica Egg SL1 Topo1 Klo...    44   9.7    1
(BB980865) Plasmodium berghei str. ANKA cDNA clone: OK011056...    44   9.7    1
(GE512058) CCFT8301.b1_I12.ab1 CCF(STU) sunflower Helianthus...    44   9.7    1
(FE092398) LV_GL_RA44G18r Litopenaeus vannamei gills cDNA li...    44   9.7    1
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome.       44   9.7    1
(CP000568) Clostridium thermocellum ATCC 27405, complete gen...    44   9.7    1
(CP000393) Trichodesmium erythraeum IMS101, complete genome.       44   9.7    1
(FH350874) CHO_OF4661xe23r1.ab1 CHO_OF4 Nicotiana tabacum ge...    36   9.9    3
(CT522285) A BAC library has been constructed from cultivar ...    34   9.9    3

>(AU036923) Dictyostelium discoideum slug cDNA, clone SSB822.
          Length = 469

 Score =  751 bits (379), Expect = 0.0
 Identities = 382/382 (100%)
 Strand = Plus / Plus


Query: 460 acaattggggatattattatcngaatccgtttctgtaatcagtcccataccaattatgaa 519
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   acaattggggatattattatcngaatccgtttctgtaatcagtcccataccaattatgaa 60


Query: 520 caaccgatattatgatgaaaattatggaattataaaaaatgtagattggaacccaaaata 579
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  caaccgatattatgatgaaaattatggaattataaaaaatgtagattggaacccaaaata 120


Query: 580 tggatataatattgataatttatttattagtttaacaaattcaaataactgtccaaagaa 639
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tggatataatattgataatttatttattagtttaacaaattcaaataactgtccaaagaa 180


Query: 640 aattcaagaaattagatgtgtatctggtttaattgcaacatatgtcagaagttttaatca 699
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aattcaagaaattagatgtgtatctggtttaattgcaacatatgtcagaagttttaatca 240


Query: 700 ttgttatattttctttgaatgcgctccaatatcaccagaaaaatgtagttcttcaattgc 759
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttgttatattttctttgaatgcgctccaatatcaccagaaaaatgtagttcttcaattgc 300


Query: 760 cccaagttgtccaaagggttatagtttaacttcaataccctcgtatccaaatggttgttt 819
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cccaagttgtccaaagggttatagtttaacttcaataccctcgtatccaaatggttgttt 360


Query: 820 agttttttattgtgacccttca 841
           ||||||||||||||||||||||
Sbjct: 361 agttttttattgtgacccttca 382

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,215,185,138
Number of extensions: 83377945
Number of successful extensions: 7130979
Number of sequences better than 10.0: 280
Length of query: 950
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 926
Effective length of database: 99,340,224,878
Effective search space: 91989048237028
Effective search space used: 91989048237028
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U01577-1 (Contig-U01577-1Q) /CSM_Contig/Contig-U01577-1Q.Seq.d
         (950 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116921_3(AC116921|pid:none) Dictyostelium discoideum chromosom...    70   1e-10
AC116305_114(AC116305|pid:none) Dictyostelium discoideum chromos...    56   2e-06
AC116305_115(AC116305|pid:none) Dictyostelium discoideum chromos...    48   4e-04
AC116305_112(AC116305|pid:none) Dictyostelium discoideum chromos...    41   0.053
CP001037_1830(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    39   0.34
AL844504_151(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    35   4.9
C71610(C71610)probable membrane associated protein PFB0615c - ma...    35   4.9
AL929352_69(AL929352|pid:none) Plasmodium falciparum strain 3D7,...    35   4.9
BT073487_1(BT073487|pid:none) Oncorhynchus mykiss clone omyk-evn...    34   6.4

>AC116921_3(AC116921|pid:none) Dictyostelium discoideum chromosome 2
           map 4624505-4657775 strain AX4, complete sequence.
          Length = 271

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 35/87 (40%), Positives = 46/87 (52%)
 Frame = +2

Query: 587 NIDNLFISLTNSNNCPKKIQEIRCVSGLIATYVRSFNHCYIFFECAPISPEKCSSSIAPS 766
           +ID +FISL +   CPK++  +RC +G I TY  +   C  F  C           + P
Sbjct: 187 SIDYMFISLPDPKLCPKELIAVRCANGTIPTYTIAATRCLSFSGCV---HRGICPLVVPG 243

Query: 767 CPKGYSLTSIPSYPNGCLVFYCDPSFL 847
           C  GY+L S  S PNGC  +YC PSFL
Sbjct: 244 CSGGYTLKSYASKPNGCPRYYCIPSFL 270

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
 Frame = +1

Query: 64  NDDFKYYAARTDTRRCDNYEKPGCGGYFVKELNTGKEEMEIYVSEINQQDDIG--VVNEN 237
           N    Y+A RTD R+C     P CGGYFV+E+  G  + E+YV  +NQ    G   V+E+
Sbjct: 19  NASESYWAIRTDLRKC---AYPMCGGYFVREV--GSNKSEVYVKSLNQTVKGGGSTVDES 73

Query: 238 KIRNAPPYHIVFRGILNRDYQNDVDTAEAHNIYRLMPMPGKTFNLTKD-TQFYTLGNPH- 411
             + AP Y +V +G + +      D      I+RL+P P K FN   +   FY + +
Sbjct: 74  LYKFAPSYTVVVKGDIKK------DEIIVSKIFRLLPKPDKPFNFDSELNNFYIVDSKET 127

Query: 412 --NLLVPQLNEN 441
             N+ + +LN N
Sbjct: 128 NSNIEIKKLNSN 139

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,230,373,073
Number of extensions: 22770621
Number of successful extensions: 47797
Number of sequences better than 10.0: 9
Number of HSP's gapped: 47765
Number of HSP's successfully gapped: 10
Length of query: 316
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 188
Effective length of database: 636,901,312
Effective search space: 119737446656
Effective search space used: 119737446656
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

 psg: 0.94  gvh: 0.51  alm: 0.29  top: 0.47  tms: 0.07  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall

>> prediction for Contig-U01577-1 is end