>Contig-U00354-1 (Contig-U00354-1Q) /CSM_Contig/Contig-U00354-1Q.Seq.d
GTTCCCTCGGAAAATAACAAACACAATACTAAGCATGTTAACGAACACCA
ACATAAGGGTCATGGTTAATGGACAACTCTCTGAATCCTTCAGAGCAGGA
AGAGGTACAAAACAGGGCGACCCAATTTCACCAACTCTCTTCGCTATAGT
ATGTGAATGCTTATCAACATCAATAAGAAAAGACAATACCATAATAGGCA
TAAAACTCAATCAGAACAACTCGATGAAGATTGGACAATATGCAGACGAC
ACAGTCACACTAGCCAGTAACATAGATGACGCAGATAAAATGGACATGAA
AGTTATAAAATTTTGCCAAGCCACCGCAGCAAAAATAAACGATAACAAAT
GTGTGTGCATCACTAAAAACCCAAAGATAAAGACCAAATATAAGACAATT
GGGGCGAAAGAAGAAGAAAGATATCTTGGCTTTTTCTTCAACCGCAAAGG
TGTAATAAGCAAAGTAGATGATACGGTGAACAAACTAGAAAACCTCACAA
AATGCTATTCGAGCGTGTCATCAACGCTAAAAGGTAGAATCACAATTCTC
AAATCATACCTCTTGTCCCAACTAACCTTCCAACTATACATCAACGAAAT
AAATGACATAAAGAAACTGGAGAACGTTAACGCCAATATGTTATTCAAAG
GGGACAGGTGGGCTATCTCAAAGGAAAGGAGCAGAAGAGACTATGAAATT
GGAGGCCTTGAACTATGGAATATGGCAACCAGATCCAATGCCCAGAAAGC
ATGGATATACGAACAATACCTCAGAGAAAAAGACGACCAGAACTGCCCTC
CACATATGGAAGTTTGGAAGTCGGAAAAAGAAAACTCACTATCAAGGATT
CACATCAAATGCTGGAAAGCCTG----------AACAGGTCAAAAACTGA
TTCAAAAGAACATTAATCACCCAATTCTACCATTTAGAGAAGCCAGATCA
ATCACAACTATCAAAGGAAGAGACTTAGCATGGAGGTATCTACTCAAGGC
ACTTCCAAAACACCATGGGGAGAATTGCCACTCATGTAAAGAAGAAGAGT
CGTCTATGCACATCTTCTTCGAATGCAAATCAATAAAACAGGATATCGAC
TCAATCTATCAAAAGGTCTGTAAAGACTCTAACAACACTTACCACGGTCC
ATGGAGCGAAAAAGTTCTCGGAAAACTACTCACACCATTCTCATCAAATC
TGATAGGAGCCATTATGGAATCGATATGGTACAGAAGAAATCAAATAAAA
TTCAACGATAACACTACAATAATAACAGAGAACCAAATAATTCATAAAAT
CAAAAAAGCGAGAGATGCCGAATGGGATAGAACAAGAAAGATAGTAGAAA
AGCAACTACGTCAAGAACTAAAATGCACTGATAACCGAGAGTCAATCAAT
CGGACCGCATCAATAAAAAGAAGACTCGAAAAATTCAGCCACAACTGGAA
CTCGAAACTCATGACCATAAACATCCCGGAACACTTCATACCATACTGCT
CATATAACACCAACTACTCA

est1=SLJ803F,1,326
est2=AFH115F,259,874
est3=AFH115Z,875,1507
est4=SLJ803Z,1278,1512

FPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRK
DNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCI
TKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRI
TILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWN
MATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKA---

---TGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESS
MHIFFECKSIKQDIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYR
RNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELKCTDNRESINRTASI
KRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS

Frame A:
vpsennkhntkhvnehqhkghg*wttl*ilqsrkryktgrpnftnslrysm*mlininkk
rqyhnrhktqseqldedwticrrhshtsq*hr*rr*nghesykilpshrsknkr*qmcvh
h*kpkdkdqi*dnwgerrrkiswlflqpqrcnkqsr*ygeqtrkphkmlfervinakr*n
hnsqiiplvptnlptihqrnk*hketger*rqyviqrgqvgylkgkeqkrl*nwrp*tme
ygnqiqcpesmdirtipqrkrrpelpstygslevgkrkltikdshqmlesl---

---nrsktdskeh*spnsti*rsqinhnyqrkrlsmevstqgtsktpwgelplm*rrrvv
yahllrmqinktgyrlnlskgl*rl*qhlprsmerkssrktthtiliksdrshygidmvq
kksnkiqr*hynnnrepnns*nqksercrmg*nkkdsrkattsrtkmh**prvnqsdrin
kkktrkiqpqlelethdhkhpgtlhtilli*hqll

Frame B:
FPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRK
DNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCI
TKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRI
TILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWN
MATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKA---

---TGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESS
MHIFFECKSIKQDIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYR
RNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELKCTDNRESINRTASI
KRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS

Frame C:
slgk*qtqy*ac*rtpt*gswlmdnslnpseqeevqnratqfhqlssl*yvnayqhq*ek
tip**a*nsirttr*rldnmqttqsh*pvt*mtqikwt*kl*nfakppqqk*titnvcas
lktqr*rpnirqlgrkkkkdilafsstakv**ak*mir*tn*ktsqnairachqr*kves
qfsnhtscpn*psnytstk*mt*rnwrtltpicyskgtgglsqrkgaeetmklealnygi
wqpdpmprkhgytnntsekkttrtalhiwkfgsrkkkthyqgftsnagkp---

---qvkn*fkrtlitqfyhlekpdqsqlskeet*hggiysrhfqntmgriathvkkksrl
ctsssnanq*nristqsikrsvktlttlttvhgakkfsenyshhshqi**eplwnrygte
eik*nstitlq**qrtk*fikskkrempngieqer**ksnyvkn*nalitesqsigphq*
kedsknsattgtrns*p*tsrntsyhtahitptt

Query= Contig-U00354-1 (Contig-U00354-1Q)
/CSM_Contig/Contig-U00354-1Q.Seq.d
         (1520 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U00354-1 (Contig-U00354-1Q) /CSM_Contig/Conti...  2954  0.0
Contig-U16566-1 (Contig-U16566-1Q) /CSM_Contig/Conti...    34  0.61
Contig-U16077-1 (Contig-U16077-1Q) /CSM_Contig/Conti...    34  0.61
Contig-U16055-1 (Contig-U16055-1Q) /CSM_Contig/Conti...    34  0.61
Contig-U15679-1 (Contig-U15679-1Q) /CSM_Contig/Conti...    34  0.61
Contig-U15536-1 (Contig-U15536-1Q) /CSM_Contig/Conti...    34  0.61
Contig-U12191-1 (Contig-U12191-1Q) /CSM_Contig/Conti...    34  0.61
Contig-U11444-1 (Contig-U11444-1Q) /CSM_Contig/Conti...    34  0.61
Contig-U11124-1 (Contig-U11124-1Q) /CSM_Contig/Conti...    34  0.61
Contig-U09374-1 (Contig-U09374-1Q) /CSM_Contig/Conti...    34  0.61

>Contig-U00354-1 (Contig-U00354-1Q) /CSM_Contig/Contig-U00354-1Q.Seq.d
          Length = 1520

 Score = 2954 bits (1490), Expect = 0.0
 Identities = 1520/1520 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    gttccctcggaaaataacaaacacaatactaagcatgttaacgaacaccaacataagggt 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    gttccctcggaaaataacaaacacaatactaagcatgttaacgaacaccaacataagggt 60

                                                                        
Query: 61   catggttaatggacaactctctgaatccttcagagcaggaagaggtacaaaacagggcga 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   catggttaatggacaactctctgaatccttcagagcaggaagaggtacaaaacagggcga 120

                                                                        
Query: 121  cccaatttcaccaactctcttcgctatagtatgtgaatgcttatcaacatcaataagaaa 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  cccaatttcaccaactctcttcgctatagtatgtgaatgcttatcaacatcaataagaaa 180

                                                                        
Query: 181  agacaataccataataggcataaaactcaatcagaacaactcgatgaagattggacaata 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  agacaataccataataggcataaaactcaatcagaacaactcgatgaagattggacaata 240

                                                                        
Query: 241  tgcagacgacacagtcacactagccagtaacatagatgacgcagataaaatggacatgaa 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  tgcagacgacacagtcacactagccagtaacatagatgacgcagataaaatggacatgaa 300

                                                                        
Query: 301  agttataaaattttgccaagccaccgcagcaaaaataaacgataacaaatgtgtgtgcat 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  agttataaaattttgccaagccaccgcagcaaaaataaacgataacaaatgtgtgtgcat 360

                                                                        
Query: 361  cactaaaaacccaaagataaagaccaaatataagacaattggggcgaaagaagaagaaag 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  cactaaaaacccaaagataaagaccaaatataagacaattggggcgaaagaagaagaaag 420

                                                                        
Query: 421  atatcttggctttttcttcaaccgcaaaggtgtaataagcaaagtagatgatacggtgaa 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  atatcttggctttttcttcaaccgcaaaggtgtaataagcaaagtagatgatacggtgaa 480

                                                                        
Query: 481  caaactagaaaacctcacaaaatgctattcgagcgtgtcatcaacgctaaaaggtagaat 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  caaactagaaaacctcacaaaatgctattcgagcgtgtcatcaacgctaaaaggtagaat 540

                                                                        
Query: 541  cacaattctcaaatcatacctcttgtcccaactaaccttccaactatacatcaacgaaat 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  cacaattctcaaatcatacctcttgtcccaactaaccttccaactatacatcaacgaaat 600

                                                                        
Query: 601  aaatgacataaagaaactggagaacgttaacgccaatatgttattcaaaggggacaggtg 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  aaatgacataaagaaactggagaacgttaacgccaatatgttattcaaaggggacaggtg 660

                                                                        
Query: 661  ggctatctcaaaggaaaggagcagaagagactatgaaattggaggccttgaactatggaa 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  ggctatctcaaaggaaaggagcagaagagactatgaaattggaggccttgaactatggaa 720

                                                                        
Query: 721  tatggcaaccagatccaatgcccagaaagcatggatatacgaacaatacctcagagaaaa 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  tatggcaaccagatccaatgcccagaaagcatggatatacgaacaatacctcagagaaaa 780

                                                                        
Query: 781  agacgaccagaactgccctccacatatggaagtttggaagtcggaaaaagaaaactcact 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  agacgaccagaactgccctccacatatggaagtttggaagtcggaaaaagaaaactcact 840

                                                                        
Query: 841  atcaaggattcacatcaaatgctggaaagcctgnnnnnnnnnnaacaggtcaaaaactga 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  atcaaggattcacatcaaatgctggaaagcctgnnnnnnnnnnaacaggtcaaaaactga 900

                                                                        
Query: 901  ttcaaaagaacattaatcacccaattctaccatttagagaagccagatcaatcacaacta 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  ttcaaaagaacattaatcacccaattctaccatttagagaagccagatcaatcacaacta 960

                                                                        
Query: 961  tcaaaggaagagacttagcatggaggtatctactcaaggcacttccaaaacaccatgggg 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  tcaaaggaagagacttagcatggaggtatctactcaaggcacttccaaaacaccatgggg 1020

                                                                        
Query: 1021 agaattgccactcatgtaaagaagaagagtcgtctatgcacatcttcttcgaatgcaaat 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 agaattgccactcatgtaaagaagaagagtcgtctatgcacatcttcttcgaatgcaaat 1080

                                                                        
Query: 1081 caataaaacaggatatcgactcaatctatcaaaaggtctgtaaagactctaacaacactt 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 caataaaacaggatatcgactcaatctatcaaaaggtctgtaaagactctaacaacactt 1140

                                                                        
Query: 1141 accacggtccatggagcgaaaaagttctcggaaaactactcacaccattctcatcaaatc 1200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 accacggtccatggagcgaaaaagttctcggaaaactactcacaccattctcatcaaatc 1200

                                                                        
Query: 1201 tgataggagccattatggaatcgatatggtacagaagaaatcaaataaaattcaacgata 1260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 tgataggagccattatggaatcgatatggtacagaagaaatcaaataaaattcaacgata 1260

                                                                        
Query: 1261 acactacaataataacagagaaccaaataattcataaaatcaaaaaagcgagagatgccg 1320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 acactacaataataacagagaaccaaataattcataaaatcaaaaaagcgagagatgccg 1320

                                                                        
Query: 1321 aatgggatagaacaagaaagatagtagaaaagcaactacgtcaagaactaaaatgcactg 1380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 aatgggatagaacaagaaagatagtagaaaagcaactacgtcaagaactaaaatgcactg 1380

                                                                        
Query: 1381 ataaccgagagtcaatcaatcggaccgcatcaataaaaagaagactcgaaaaattcagcc 1440
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 ataaccgagagtcaatcaatcggaccgcatcaataaaaagaagactcgaaaaattcagcc 1440

                                                                        
Query: 1441 acaactggaactcgaaactcatgaccataaacatcccggaacacttcataccatactgct 1500
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 acaactggaactcgaaactcatgaccataaacatcccggaacacttcataccatactgct 1500

                                
Query: 1501 catataacaccaactactca 1520
            ||||||||||||||||||||
Sbjct: 1501 catataacaccaactactca 1520


>Contig-U16566-1 (Contig-U16566-1Q) /CSM_Contig/Contig-U16566-1Q.Seq.d
          Length = 2153

 Score = 34.2 bits (17), Expect = 0.61
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 296 atgaaagttataaaatt 312
           |||||||||||||||||
Sbjct: 954 atgaaagttataaaatt 970


>Contig-U16077-1 (Contig-U16077-1Q) /CSM_Contig/Contig-U16077-1Q.Seq.d
          Length = 721

 Score = 34.2 bits (17), Expect = 0.61
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 890 tcaaaaactgattcaaa 906
           |||||||||||||||||
Sbjct: 438 tcaaaaactgattcaaa 454


  Database: CSM
    Posted date:  Jun 21, 2004 12:56 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,473
Number of Sequences: 8402
Number of extensions: 14473
Number of successful extensions: 1148
Number of sequences better than 10.0: 93
length of query: 1520
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1504
effective length of database: 7,941,110
effective search space: 11943429440
effective search space used: 11943429440
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)

Query= Contig-U00354-1 (Contig-U00354-1Q) /CSM_Contig/Contig-U00354-1Q.Seq.d
         (1520 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AF298209) Dictyostelium discoideum non-LTR retrotransposon ...  1602   0.0    1
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...  1602   0.0    1
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...  1602   0.0    1
(BJ342859) Dictyostelium discoideum cDNA clone:dda15m03, 3' ...  1255   0.0    1
(BJ326283) Dictyostelium discoideum cDNA clone:dda15m03, 5' ...  1217   0.0    1
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...  1207   0.0    1
(AF482382) Dictyostelium discoideum ABC transporter AbcG3 (a...   934   0.0    1
(AU060462) Dictyostelium discoideum slug cDNA, clone SLJ803.      646   0.0    1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...   517   e-142  1
(AU053850) Dictyostelium discoideum slug cDNA, clone SLJ803.      464   e-126  1
(AL919428) Danio rerio EST sequence, clone 063-A05-2.              50   0.25   1
(AC186980) Canis familiaris chromosome 11, clone XX-273L8, c...    36   0.54   2
(AC186961) Canis Familiaris chromosome 11, clone XX-201O6, c...    36   0.55   2
(AC183632) Canis Familiaris chromosome 11, clone XX-262D11, ...    36   0.55   2
(AC186999) Canis familiaris chromosome 11, clone XX-404J22, ...    36   0.55   2
(CE804095) tigr-gss-dog-17000317822683 Dog Library Canis lup...    36   0.72   2
(CE547557) tigr-gss-dog-17000366169958 Dog Library Canis lup...    36   0.76   2
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    48   1.0    1
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com...    48   1.0    1
(AE002124) Ureaplasma parvum serovar 3 str. ATCC 700970 sect...    48   1.0    1
(AC165039) Bos taurus clone CH240-161N18, WORKING DRAFT SEQU...    42   1.0    5
(AP010232) Lotus japonicus genomic DNA, clone: LjT03L06, TM1...    40   1.2    5
(CU928473) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   2.2    6
(AX356437) Sequence 71 from Patent WO0181622.                      46   2.6    2
(FH941500) CHO_OF6729xc12r1.ab1 CHO_OF6 Nicotiana tabacum ge...    46   4.0    1
(DE477226) Bombyx mori genomic DNA, Fosmid clone:GBMFno79_m0...    46   4.0    1
(FC524385) CBPB1465.fwd CBPB Thalassiosira pseudonana RNA fr...    46   4.0    1
(AC176605) Strongylocentrotus purpuratus clone R3-3079F23, W...    38   4.5    4
(EJ957895) 1093018982732 Global-Ocean-Sampling_GS-30-02-01-1...    40   4.7    2
(BU242241) 603778602F1 CSEQCHN34 Gallus gallus cDNA clone Ch...    32   9.9    2

>(AF298209) Dictyostelium discoideum non-LTR retrotransposon TRE5-B,
            group-specific antigen (gag) and polyprotein (pol) genes,
            complete cds.
          Length = 5772

 Score = 1602 bits (808), Expect = 0.0
 Identities = 856/872 (98%)
 Strand = Plus / Plus


Query: 1    gttccctcggaaaataacaaacacaatactaagcatgttaacgaacaccaacataagggt 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3868 gttccctcggaaaataacaaacacaatactaagcatgttaacgaacaccaacataagggt 3927


Query: 61   catggttaatggacaactctctgaatccttcagagcaggaagaggtacaaaacagggcga 120
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3928 catggtaaatggacaactctctgaatccttcagagcaggaagaggtacaaaacagggcga 3987


Query: 121  cccaatttcaccaactctcttcgctatagtatgtgaatgcttatcaacatcaataagaaa 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3988 cccaatttcaccaactctcttcgctatagtatgtgaatgcttatcaacatcaataagaaa 4047


Query: 181  agacaataccataataggcataaaactcaatcagaacaactcgatgaagattggacaata 240
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 4048 agacaataccataataggcataaaactcaatcagaacaattcgatgaagattggacaata 4107


Query: 241  tgcagacgacacagtcacactagccagtaacatagatgacgcagataaaatggacatgaa 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 4108 tgcagacgacacagtcacactagccagtaacatagatgacgcagataaaatggatatgaa 4167


Query: 301  agttataaaattttgccaagccaccgcagcaaaaataaacgataacaaatgtgtgtgcat 360
            |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 4168 agttataaaattttgccaagccacagcagcaaaaataaacgataataaatgtgtgtgcat 4227


Query: 361  cactaaaaacccaaagataaagaccaaatataagacaattggggcgaaagaagaagaaag 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4228 cactaaaaacccaaagataaagaccaaatataagacaattggggcgaaagaagaagaaag 4287


Query: 421  atatcttggctttttcttcaaccgcaaaggtgtaataagcaaagtagatgatacggtgaa 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4288 atatcttggctttttcttcaaccgcaaaggtgtaataagcaaagtagatgatacggtgaa 4347


Query: 481  caaactagaaaacctcacaaaatgctattcgagcgtgtcatcaacgctaaaaggtagaat 540
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4348 caaactggaaaacctcacaaaatgctattcgagcgtgtcatcaacgctaaaaggtagaat 4407


Query: 541  cacaattctcaaatcatacctcttgtcccaactaaccttccaactatacatcaacgaaat 600
            |||||| ||||||||||||||  ||||||||||||| |||||||||||||||||||||||
Sbjct: 4408 cacaatcctcaaatcatacctgctgtcccaactaacattccaactatacatcaacgaaat 4467


Query: 601  aaatgacataaagaaactggagaacgttaacgccaatatgttattcaaaggggacaggtg 660
            |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 4468 aaatgacataaagaaactggagaacgttaatgccaacatgttattcaaaggggacaggtg 4527


Query: 661  ggctatctcaaaggaaaggagcagaagagactatgaaattggaggccttgaactatggaa 720
            |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 4528 ggctatctcaaaagaaaggagcagaagagactatgaaattggaggcctggaactctggaa 4587


Query: 721  tatggcaaccagatccaatgcccagaaagcatggatatacgaacaatacctcagagaaaa 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4588 tatggcaaccagatccaatgcccagaaagcatggatatacgaacaatacctcagagaaaa 4647


Query: 781  agacgaccagaactgccctccacatatggaagtttggaagtcggaaaaagaaaactcact 840
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 4648 agacgaccagaactgccctccacatatggaagtctggaagtcggaaaaagaaaactcact 4707


Query: 841  atcaaggattcacatcaaatgctggaaagcct 872
            ||||||||||||||||||||||||||||||||
Sbjct: 4708 atcaaggattcacatcaaatgctggaaagcct 4739

 Score = 1215 bits (613), Expect = 0.0
 Identities = 631/637 (99%)
 Strand = Plus / Plus


Query: 884  aacaggtcaaaaactgattcaaaagaacattaatcacccaattctaccatttagagaagc 943
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4885 aacaggtcaaaaactgattcaaaagaacattaatcacccaattctaccatttagagaagc 4944


Query: 944  cagatcaatcacaactatcaaaggaagagacttagcatggaggtatctactcaaggcact 1003
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 4945 cagatcaatcacaactatcaaaggaagagacttagcatggagatatctactcaaggcact 5004


Query: 1004 tccaaaacaccatggggagaattgccactcatgtaaagaagaagagtcgtctatgcacat 1063
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 5005 tccaaaacaccatggggagaattgccactcatgtaaagaagaagaatcgtctatgcacat 5064


Query: 1064 cttcttcgaatgcaaatcaataaaacaggatatcgactcaatctatcaaaaggtctgtaa 1123
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 5065 cttcttcgaatgcaaatcaataaaacagaatatcgactcaatctatcaaaaggtctgtaa 5124


Query: 1124 agactctaacaacacttaccacggtccatggagcgaaaaagttctcggaaaactactcac 1183
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5125 agactccaacaacacttaccacggtccatggagcgaaaaagttctcggaaaactactcac 5184


Query: 1184 accattctcatcaaatctgataggagccattatggaatcgatatggtacagaagaaatca 1243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5185 accattctcatcaaatctgataggagccattatggaatcgatatggtacagaagaaatca 5244


Query: 1244 aataaaattcaacgataacactacaataataacagagaaccaaataattcataaaatcaa 1303
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5245 aataaaattcaacgataacactacaataataacagagaaccaaataattcataaaatcaa 5304


Query: 1304 aaaagcgagagatgccgaatgggatagaacaagaaagatagtagaaaagcaactacgtca 1363
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 5305 aaaagcgagagatgccgaatgggatagaacaagaaagatagtagaaaaacaactacgtca 5364


Query: 1364 agaactaaaatgcactgataaccgagagtcaatcaatcggaccgcatcaataaaaagaag 1423
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5365 agaactaagatgcactgataaccgagagtcaatcaatcggaccgcatcaataaaaagaag 5424


Query: 1424 actcgaaaaattcagccacaactggaactcgaaactcatgaccataaacatcccggaaca 1483
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5425 actcgaaaaattcagccacaactggaactcgaaactcatgaccataaacatcccggaaca 5484


Query: 1484 cttcataccatactgctcatataacaccaactactca 1520
            |||||||||||||||||||||||||||||||||||||
Sbjct: 5485 cttcataccatactgctcatataacaccaactactca 5521

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,772,641,323
Number of extensions: 102669990
Number of successful extensions: 7687403
Number of sequences better than 10.0: 30
Length of query: 1520
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1496
Effective length of database: 99,340,224,878
Effective search space: 148612976417488
Effective search space used: 148612976417488
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U00354-1 (Contig-U00354-1Q) /CSM_Contig/Contig-U00354-1Q.Seq.d
         (1520 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF298209_2(AF298209|pid:none) Dictyostelium discoideum non-LTR r...   588   e-166
S20106(S20106;S30209;S30211;S30207;S25646)hypothetical protein 2...   223   1e-56
AF134171_2(AF134171|pid:none) Dictyostelium discoideum retrotran...   155   3e-36
AF134170_2(AF134170|pid:none) Dictyostelium discoideum retrotran...   141   7e-32
DQ000238_2(DQ000238|pid:none) Bos taurus insertion sequence L1_B...    80   3e-13
AB097143_2(AB097143|pid:none) Danio rerio retrotransposon DewaDr...    79   4e-13
EF599954_2(EF599954|pid:none) Sus scrofa retrotransposon L1, com...    79   6e-13
AC112209_5(AC112209|pid:none) Oryza sativa (japonica cultivar-gr...    77   2e-12
AB097146_1(AB097146|pid:none) Ciona intestinalis retrotransposon...    77   2e-12
U93569_2(U93569|pid:none) Human L1 element L1.20 p40 and putativ...    76   4e-12
U93570_2(U93570|pid:none) Human L1 element L1.21 p40 and putativ...    76   4e-12
JU0033(JU0033)hypothetical L1 protein (third intron of gene TS) ...    75   6e-12
AF003535_1(AF003535|pid:none) Homo sapiens L1 element ORF2-like ...    74   1e-11
M22333_1(M22333|pid:none) Human factor VIII gene L1 element inse...    74   1e-11
M80343_2(M80343|pid:none) Human transposon L1.2.                       74   1e-11
M80340_1(M80340|pid:none) Homo sapiens transposon L1.1 ORF2 gene...    74   2e-11
I38588(I38588) reverse transcriptase homolog - human retrotransp...    74   2e-11
AF421375_1(AF421375|pid:none) Homo sapiens L1IGL LINE element in...    74   2e-11
AF149422_2(AF149422|pid:none) Homo sapiens LINE1 element inserte...    74   2e-11
AK091740_1(AK091740|pid:none) Homo sapiens cDNA FLJ34421 fis, cl...    74   2e-11
U93568_2(U93568|pid:none) Human L1 element L1.19 p40 and putativ...    73   2e-11
U93565_1(U93565|pid:none) Human L1 element L1.12 putative p150 g...    72   4e-11
X52235_2(X52235|pid:none) Human DNA for LINE-1 transposable elem...    72   7e-11
DQ456866_2(DQ456866|pid:none) Pan troglodytes clone L1.56 retrot...    72   7e-11
S23650(S23650)retrovirus-related hypothetical protein II - human...    72   7e-11
B34087(B34087)hypothetical protein (L1H 3' region) - human             71   9e-11
U93574_2(U93574|pid:none) Human L1 element L1.39 p40 and putativ...    71   1e-10
M22334_1(M22334|pid:none) Human factor VIII gene L1 element inse...    70   2e-10
AC079935_18(AC079935|pid:none) Genomic sequence for Oryza sativa...    70   2e-10
AM487466_1(AM487466|pid:none) Vitis vinifera contig VV78X228267....    69   6e-10
AF527809_9(AF527809|pid:none) Sorghum bicolor clone BAC SB_BBc02...    68   8e-10
S16783(S16783) probable RNA-directed DNA polymerase (EC 2.7.7.49...    68   8e-10
DQ456868_2(DQ456868|pid:none) Pan troglodytes clone L1.790 retro...    68   8e-10
AM451039_6(AM451039|pid:none) Vitis vinifera contig VV78X256955....    67   1e-09
T25352(T25352)hypothetical protein T27C5.9 - Caenorhabditis eleg...    67   1e-09
AM429075_2(AM429075|pid:none) Vitis vinifera contig VV78X038035....    67   2e-09
AL662944_15(AL662944|pid:none) Oryza sativa genomic DNA, chromos...    67   2e-09
AC137922_24(AC137922|pid:none) Oryza sativa (japonica cultivar-g...    67   2e-09
AY539886_1(AY539886|pid:none) Rattus norvegicus LRRG00135 mRNA, ...    67   2e-09
AM439879_4(AM439879|pid:none) Vitis vinifera contig VV78X214659....    66   3e-09
M13101_1(M13101|pid:none) Rat long interspersed repetitive DNA s...    66   3e-09
AC148918_11(AC148918|pid:none) Medicago truncatula chromosome 2 ...    66   3e-09
PH0217(PH0217)reverse transcriptase-like protein - rat (fragment)      66   4e-09
AC105364_21(AC105364|pid:none) Oryza sativa (japonica cultivar-g...    66   4e-09
M13100_5(M13100|pid:none) Rat long interspersed repetitive DNA s...    66   4e-09
AC146790_5(AC146790|pid:none) Medicago truncatula clone mth2-123...    65   7e-09
AM472395_1(AM472395|pid:none) Vitis vinifera contig VV78X135216....    65   7e-09
DQ100473_2(DQ100473|pid:none) Rattus norvegicus LINE-1 retrotran...    65   9e-09
AM467597_1(AM467597|pid:none) Vitis vinifera contig VV78X048902....    65   9e-09
AY325175_1(AY325175|pid:none) Rattus norvegicus Ab2-051 mRNA, co...    64   1e-08
AC144477_13(AC144477|pid:none) Medicago truncatula clone mth2-6k...    64   1e-08
AM425605_1(AM425605|pid:none) Vitis vinifera contig VV78X198209....    64   2e-08
AY497855_1(AY497855|pid:none) Menidia beryllina isolate Mb_A1_6 ...    64   2e-08
AY539881_1(AY539881|pid:none) Rattus norvegicus LRRG00130 mRNA, ...    64   2e-08
AY387074_1(AY387074|pid:none) Rattus norvegicus LRRGT00088 mRNA,...    64   2e-08
AM424252_6(AM424252|pid:none) Vitis vinifera contig VV78X140744....    64   2e-08
AF081106_2(AF081106|pid:none) Mus musculus domesticus L1 retrotr...    63   2e-08
AF081112_2(AF081112|pid:none) Mus musculus domesticus L1 retrotr...    63   2e-08
AF081111_2(AF081111|pid:none) Mus musculus domesticus L1 retrotr...    63   2e-08
AF081110_2(AF081110|pid:none) Mus musculus domesticus L1 retrotr...    63   2e-08
AF016099_3(AF016099|pid:none) Mus musculus glycine receptor beta...    63   2e-08
AM432089_1(AM432089|pid:none) Vitis vinifera contig VV78X095327....    63   2e-08
AB018705_2(AB018705|pid:none) Mus musculus DNA, L1 element inser...    63   2e-08
AF055640_2(AF055640|pid:none) Oryzias latipes SW1 retrotransposo...    63   3e-08
AY053456_2(AY053456|pid:none) Mus musculus domesticus retrotrans...    63   3e-08
AY053455_2(AY053455|pid:none) Mus musculus domesticus retrotrans...    63   3e-08
AK095784_1(AK095784|pid:none) Homo sapiens cDNA FLJ38465 fis, cl...    63   3e-08
AF015685_1(AF015685|pid:none) Drosophila mercatorum R2 retrotran...    62   4e-08
AY387094_1(AY387094|pid:none) Rattus norvegicus LRRGT00108 mRNA,...    62   4e-08
M29324_2(M29324|pid:none) Mus musculus domesticus LINE L1Md-A13,...    62   4e-08
AM475602_1(AM475602|pid:none) Vitis vinifera contig VV78X103370....    62   6e-08
AB012223_1(AB012223|pid:none) Canis lupus familiaris LINE-1 elem...    62   6e-08
AC147536_6(AC147536|pid:none) Medicago truncatula clone mth2-9l3...    62   6e-08
AC148290_1(AC148290|pid:none) Medicago truncatula chromosome 2 c...    62   6e-08
AC133862_2(AC133862|pid:none) Medicago truncatula clone mth2-30d...    62   6e-08
AF081114_2(AF081114|pid:none) Mus musculus domesticus L1 retrotr...    62   7e-08
AY497885_1(AY497885|pid:none) Rivulus marmoratus isolate Rm_A2_3...    62   7e-08
AP008212_1136(AP008212|pid:none) Oryza sativa (japonica cultivar...    61   9e-08
AK097143_1(AK097143|pid:none) Homo sapiens cDNA FLJ39824 fis, cl...    61   9e-08
AY383663_1(AY383663|pid:none) Rattus norvegicus LRRGT00008 mRNA,...    61   9e-08
AF055641_2(AF055641|pid:none) Oryzias latipes SW1 retrotransposo...    61   9e-08
AM482073_1(AM482073|pid:none) Vitis vinifera contig VV78X077641....    61   1e-07
AY497812_1(AY497812|pid:none) Fundulus heteroclitus isolate Fh_A...    61   1e-07
AC124218_17(AC124218|pid:none) Medicago truncatula clone mth2-30...    61   1e-07
AM439405_5(AM439405|pid:none) Vitis vinifera contig VV78X120490....    60   2e-07
AM460318_1(AM460318|pid:none) Vitis vinifera contig VV78X168573....    60   2e-07
AM487930_1(AM487930|pid:none) Vitis vinifera contig VV78X229798....    60   2e-07
AY497807_1(AY497807|pid:none) Fundulus heteroclitus isolate Fh_A...    60   2e-07
AM456381_1(AM456381|pid:none) Vitis vinifera contig VV78X059091....    60   2e-07
AM454583_2(AM454583|pid:none) Vitis vinifera contig VV78X158267....    60   2e-07
AY497802_1(AY497802|pid:none) Fundulus heteroclitus isolate Fh_A...    60   2e-07
AY539902_1(AY539902|pid:none) Rattus norvegicus LRRGT00151 mRNA,...    60   2e-07
AM460027_3(AM460027|pid:none) Vitis vinifera contig VV78X017061....    60   2e-07
AF254443_2(AF254443|pid:none) Candida albicans non-LTR retrotran...    60   2e-07
(P16423) RecName: Full=Retrovirus-related Pol polyprotein from t...    60   2e-07
AC006136_14(AC006136|pid:none) Arabidopsis thaliana chromosome 2...    60   3e-07
AY497810_1(AY497810|pid:none) Fundulus heteroclitus isolate Fh_A...    60   3e-07
AY027869_1(AY027869|pid:none) Schistosoma japonicum retrotranspo...    60   3e-07
AF412214_1(AF412214|pid:none) Schistosoma japonicum clone S10A n...    60   3e-07
AK094887_1(AK094887|pid:none) Homo sapiens cDNA FLJ37568 fis, cl...    60   3e-07
FM992695_349(FM992695|pid:none) Candida dubliniensis CD36 chromo...    60   3e-07
AC078894_13(AC078894|pid:none) Oryza sativa (japonica cultivar-g...    60   3e-07
AM442410_2(AM442410|pid:none) Vitis vinifera contig VV78X150313....    59   4e-07
AY497857_1(AY497857|pid:none) Menidia beryllina isolate Mb_A1_8 ...    59   5e-07
AY497816_1(AY497816|pid:none) Fundulus heteroclitus isolate Fh_A...    59   5e-07
AY497858_1(AY497858|pid:none) Menidia beryllina isolate Mb_A1_1 ...    59   5e-07
AC125474_13(AC125474|pid:none) Medicago truncatula clone mth2-16...    59   5e-07
AY878356_1(AY878356|pid:none) Homo sapiens reverse transcriptase...    59   6e-07
FM992690_109(FM992690|pid:none) Candida dubliniensis CD36 chromo...    58   8e-07
AM427207_2(AM427207|pid:none) Vitis vinifera contig VV78X248088....    58   8e-07
AM459840_1(AM459840|pid:none) Vitis vinifera contig VV79X001603....    58   8e-07
AM476514_1(AM476514|pid:none) Vitis vinifera contig VV78X123828....    58   8e-07
AY497818_1(AY497818|pid:none) Fundulus heteroclitus isolate Fh_A...    58   8e-07
AC152403_26(AC152403|pid:none) Medicago truncatula clone mth2-29...    58   8e-07
AC144515_3(AC144515|pid:none) Medicago truncatula clone mth2-5j8...    55   8e-07
AB097129_1(AB097129|pid:none) Entamoeba histolytica retrotranspo...    58   1e-06
AM426079_1(AM426079|pid:none) Vitis vinifera contig VV78X044136....    58   1e-06
AC135917_4(AC135917|pid:none) Oryza sativa (japonica cultivar-gr...    58   1e-06
AL606611_5(AL606611|pid:none) Oryza sativa genomic DNA, chromoso...    57   1e-06
AC138131_10(AC138131|pid:none) Medicago truncatula clone mth2-21...    57   1e-06
AY497876_1(AY497876|pid:none) Rivulus marmoratus isolate Rm_A1_D...    57   1e-06
AM430000_1(AM430000|pid:none) Vitis vinifera contig VV78X017225....    57   1e-06
AM481260_2(AM481260|pid:none) Vitis vinifera contig VV78X161420....    57   1e-06
AM436077_1(AM436077|pid:none) Vitis vinifera contig VV78X006229....    57   1e-06
AC135209_17(AC135209|pid:none) Oryza sativa (japonica cultivar-g...    57   1e-06
AY497870_1(AY497870|pid:none) Rivulus marmoratus isolate Rm_A1_2...    57   1e-06
AJ893356_28(AJ893356|pid:none) Phytophthora infestans, clone PI-...    57   2e-06
AM451364_6(AM451364|pid:none) Vitis vinifera contig VV78X256870....    57   2e-06
AC137606_2(AC137606|pid:none) Oryza sativa (japonica cultivar-gr...    57   2e-06
AC148178_8(AC148178|pid:none) Medicago truncatula clone mth2-5b2...    57   2e-06
AB097138_2(AB097138|pid:none) Danio rerio retrotransposon KibiDr...    57   2e-06
AM451816_2(AM451816|pid:none) Vitis vinifera contig VV79X001917....    57   2e-06
AL606691_14(AL606691|pid:none) Oryza sativa genomic DNA, chromos...    57   2e-06
AF466646_9(AF466646|pid:none) Zea mays putative transposase (Z19...    57   2e-06
AF436853_1(AF436853|pid:none) Bombyx mori R2 element reverse tra...    57   2e-06
AM443227_1(AM443227|pid:none) Vitis vinifera contig VV79X000254....    57   2e-06
AM479435_5(AM479435|pid:none) Vitis vinifera contig VV78X070298....    57   2e-06
AC165446_27(AC165446|pid:none) Medicago truncatula clone mth2-61...    57   2e-06
AM463484_3(AM463484|pid:none) Vitis vinifera contig VV78X172556....    57   2e-06
AM482922_1(AM482922|pid:none) Vitis vinifera contig VV78X206068....    57   2e-06
AY497776_1(AY497776|pid:none) Cyprinodon variegatus isolate Cv_A...    57   2e-06
AM486280_5(AM486280|pid:none) Vitis vinifera contig VV78X072852....    57   2e-06
AC090485_5(AC090485|pid:none) Genomic Sequence for Oryza sativa,...    56   3e-06
AC068924_2(AC068924|pid:none) Oryza sativa chromosome 10 BAC OSJ...    56   3e-06
AY497783_1(AY497783|pid:none) Cyprinodon variegatus isolate Cv_A...    56   3e-06
AM433325_1(AM433325|pid:none) Vitis vinifera contig VV78X049534....    56   3e-06
AC144619_3(AC144619|pid:none) Medicago truncatula clone mth2-8n3...    56   3e-06
AM464142_3(AM464142|pid:none) Vitis vinifera contig VV78X257371....    56   3e-06
AM429684_1(AM429684|pid:none) Vitis vinifera contig VV78X011738....    56   3e-06
AM469168_1(AM469168|pid:none) Vitis vinifera contig VV78X166125....    56   3e-06
A47757(A47757;D40442)retrovirus-related reverse transcriptase ho...    56   4e-06
AM464279_1(AM464279|pid:none) Vitis vinifera contig VV78X093338....    56   4e-06
AY497859_1(AY497859|pid:none) Menidia beryllina isolate Mb_A1_2 ...    56   4e-06
AM459455_1(AM459455|pid:none) Vitis vinifera contig VV78X172017....    56   4e-06
AK127459_1(AK127459|pid:none) Homo sapiens cDNA FLJ45551 fis, cl...    55   5e-06
AC025294_10(AC025294|pid:none) Arabidopsis thaliana chromosome 1...    55   5e-06
AM475320_1(AM475320|pid:none) Vitis vinifera contig VV78X164089....    55   5e-06
AY497869_1(AY497869|pid:none) Rivulus marmoratus isolate Rm_A1_2...    55   5e-06
AM425450_1(AM425450|pid:none) Vitis vinifera contig VV78X052641....    55   5e-06
AM451709_1(AM451709|pid:none) Vitis vinifera contig VV78X005847....    55   5e-06
AM463959_1(AM463959|pid:none) Vitis vinifera contig VV78X194909....    55   5e-06
AY497777_1(AY497777|pid:none) Cyprinodon variegatus isolate Cv_A...    55   5e-06
AL606682_7(AL606682|pid:none) Oryza sativa genomic DNA, chromoso...    55   7e-06
AK127765_1(AK127765|pid:none) Homo sapiens cDNA FLJ45866 fis, cl...    55   7e-06
AB231839_2(AB231839|pid:none) Ipomoea batatas LINE-type retrotra...    55   7e-06
AM475797_1(AM475797|pid:none) Vitis vinifera contig VV78X140217....    55   7e-06
EF657230_14(EF657230|pid:none) Cucumis melo clone BAC 13J4, comp...    55   7e-06
AM465203_1(AM465203|pid:none) Vitis vinifera contig VV78X111937....    55   7e-06
AB111947_2(AB111947|pid:none) Takifugu rubripes retrotransposon ...    55   7e-06
AM475512_1(AM475512|pid:none) Vitis vinifera contig VV78X096952....    55   7e-06
AM426217_1(AM426217|pid:none) Vitis vinifera contig VV78X261440....    55   7e-06
AC027038_17(AC027038|pid:none) Oryza sativa chromosome 10 BAC OS...    55   9e-06
AC140545_18(AC140545|pid:none) Medicago truncatula clone mth2-11...    55   9e-06
AM447194_4(AM447194|pid:none) Vitis vinifera contig VV78X145725....    55   9e-06
AC116367_11(AC116367|pid:none) Oryza sativa (japonica cultivar-g...    55   9e-06
AC119292_2(AC119292|pid:none) Oryza sativa (japonica cultivar-gr...    55   9e-06
AM439013_1(AM439013|pid:none) Vitis vinifera contig VV78X178010....    55   9e-06
AP008216_782(AP008216|pid:none) Oryza sativa (japonica cultivar-...    55   9e-06
AC098696_15(AC098696|pid:none) Oryza sativa (japonica cultivar-g...    55   9e-06
AM465358_1(AM465358|pid:none) Vitis vinifera contig VV78X103665....    54   1e-05
AY497867_1(AY497867|pid:none) Rivulus marmoratus isolate Rm_A1_1...    54   1e-05
AM487368_2(AM487368|pid:none) Vitis vinifera contig VV78X074410....    54   1e-05
AC140722_9(AC140722|pid:none) Medicago truncatula clone mth2-14e...    54   1e-05
AY497875_1(AY497875|pid:none) Rivulus marmoratus isolate Rm_A1_9...    54   1e-05
FM992689_233(FM992689|pid:none) Candida dubliniensis CD36 chromo...    54   1e-05
AP008218_288(AP008218|pid:none) Oryza sativa (japonica cultivar-...    54   1e-05
AC092559_11(AC092559|pid:none) Oryza sativa chromosome 3 BAC OSJ...    54   1e-05
AM448640_1(AM448640|pid:none) Vitis vinifera contig VV78X008556....    54   1e-05
AL662955_4(AL662955|pid:none) Oryza sativa genomic DNA, chromoso...    54   2e-05
AC108884_10(AC108884|pid:none) Oryza sativa (japonica cultivar-g...    54   2e-05
AM467485_2(AM467485|pid:none) Vitis vinifera contig VV78X175065....    54   2e-05
AM423535_2(AM423535|pid:none) Vitis vinifera contig VV78X144012....    54   2e-05
AC120307_12(AC120307|pid:none) Oryza sativa (japonica cultivar-g...    54   2e-05
AM449495_1(AM449495|pid:none) Vitis vinifera contig VV78X164747....    54   2e-05
AM488607_1(AM488607|pid:none) Vitis vinifera contig VV78X126057....    54   2e-05
AM489137_4(AM489137|pid:none) Vitis vinifera contig VV78X201315....    54   2e-05
AY497865_1(AY497865|pid:none) Rivulus marmoratus isolate Rm_A1_1...    54   2e-05
AM442190_1(AM442190|pid:none) Vitis vinifera contig VV78X257344....    53   3e-05
AM451855_1(AM451855|pid:none) Vitis vinifera contig VV78X013107....    53   3e-05
AM433636_1(AM433636|pid:none) Vitis vinifera contig VV78X150312....    53   3e-05
AC143337_1(AC143337|pid:none) Medicago truncatula clone mth2-35d...    53   3e-05
AF025672_2(AF025672|pid:none) Synthetic construct, reconstructio...    53   3e-05
AC153725_12(AC153725|pid:none) Medicago truncatula clone mth2-78...    53   3e-05
AM434008_5(AM434008|pid:none) Vitis vinifera contig VV78X123966....    53   3e-05
AM453683_1(AM453683|pid:none) Vitis vinifera contig VV78X032591....    53   3e-05
AM446005_4(AM446005|pid:none) Vitis vinifera contig VV78X057739....    53   3e-05
AM483589_4(AM483589|pid:none) Vitis vinifera contig VV78X051620....    53   3e-05
AM451895_1(AM451895|pid:none) Vitis vinifera contig VV78X110176....    53   3e-05
AM472233_2(AM472233|pid:none) Vitis vinifera contig VV78X070039....    52   4e-05
AY497874_1(AY497874|pid:none) Rivulus marmoratus isolate Rm_A1_7...    52   4e-05
AC148396_10(AC148396|pid:none) Medicago truncatula chromosome 2 ...    52   4e-05
AC135959_15(AC135959|pid:none) Medicago truncatula clone mth2-26...    52   4e-05
AY497872_1(AY497872|pid:none) Rivulus marmoratus isolate Rm_A1_2...    52   4e-05
AY497889_1(AY497889|pid:none) Rivulus marmoratus isolate Rm_A2_9...    52   4e-05
AM472606_1(AM472606|pid:none) Vitis vinifera contig VV78X273433....    52   4e-05
AC121244_24(AC121244|pid:none) Medicago truncatula clone mth2-31...    52   4e-05
AM472146_1(AM472146|pid:none) Vitis vinifera contig VV78X230972....    52   4e-05
AM481736_1(AM481736|pid:none) Vitis vinifera contig VV78X018991....    52   6e-05
AP008211_647(AP008211|pid:none) Oryza sativa (japonica cultivar-...    52   6e-05
AM473685_2(AM473685|pid:none) Vitis vinifera contig VV78X009456....    52   6e-05
AF015814_1(AF015814|pid:none) Limulus polyphemus retrotransposon...    52   6e-05
AM436748_1(AM436748|pid:none) Vitis vinifera contig VV78X027943....    52   6e-05
AY497887_1(AY497887|pid:none) Rivulus marmoratus isolate Rm_A2_5...    52   6e-05
AY539942_1(AY539942|pid:none) Rattus norvegicus LRRGT00191 mRNA,...    52   8e-05
AM475660_2(AM475660|pid:none) Vitis vinifera contig VV78X226254....    52   8e-05
AL731579_18(AL731579|pid:none) Oryza sativa genomic DNA, chromos...    52   8e-05
AC118980_11(AC118980|pid:none) Oryza sativa (japonica cultivar-g...    52   8e-05
AM480671_3(AM480671|pid:none) Vitis vinifera contig VV78X189646....    52   8e-05
AM436811_2(AM436811|pid:none) Vitis vinifera contig VV78X075732....    51   1e-04
AM469453_1(AM469453|pid:none) Vitis vinifera contig VV78X213342....    51   1e-04
AM456036_2(AM456036|pid:none) Vitis vinifera contig VV78X088590....    51   1e-04
AC135558_6(AC135558|pid:none) Oryza sativa (japonica cultivar-gr...    51   1e-04
AM428496_1(AM428496|pid:none) Vitis vinifera contig VV78X200346....    51   1e-04
AY497866_1(AY497866|pid:none) Rivulus marmoratus isolate Rm_A1_1...    51   1e-04
EU810765_17(EU810765|pid:none) Sorghum bicolor clone BAC Sbb1244...    51   1e-04
AX881382_1(AX881382|pid:none) Sequence 16287 from Patent EP10746...    51   1e-04
AM452242_2(AM452242|pid:none) Vitis vinifera contig VV78X146774....    51   1e-04
AY497871_1(AY497871|pid:none) Rivulus marmoratus isolate Rm_A1_2...    51   1e-04
AM470907_2(AM470907|pid:none) Vitis vinifera contig VV78X107386....    51   1e-04
AC134046_29(AC134046|pid:none) Oryza sativa (japonica cultivar-g...    51   1e-04
AC090483_7(AC090483|pid:none) Genomic sequence for Oryza sativa,...    51   1e-04
AM463076_2(AM463076|pid:none) Vitis vinifera contig VV78X045386....    51   1e-04
AC069300_13(AC069300|pid:none) Oryza sativa chromosome 10 BAC OS...    51   1e-04
AM437456_2(AM437456|pid:none) Vitis vinifera contig VV78X188142....    50   2e-04
AC135560_9(AC135560|pid:none) Oryza sativa chromosome 3 BAC OSJN...    50   2e-04
AC124952_15(AC124952|pid:none) Medicago truncatula clone mth2-24...    50   2e-04
AM472606_3(AM472606|pid:none) Vitis vinifera contig VV78X273433....    50   2e-04
AM481431_3(AM481431|pid:none) Vitis vinifera contig VV78X083295....    50   2e-04
T22200(T22200)hypothetical protein F44G3.3 - Caenorhabditis eleg...    50   2e-04
AM428653_2(AM428653|pid:none) Vitis vinifera contig VV78X061432....    50   2e-04
AC003952_10(AC003952|pid:none) Arabidopsis thaliana chromosome I...    50   2e-04
AC138171_21(AC138171|pid:none) Medicago truncatula clone mth2-7f...    50   2e-04
AL663018_3(AL663018|pid:none) Oryza sativa genomic DNA, chromoso...    50   2e-04
AM487264_3(AM487264|pid:none) Vitis vinifera contig VV78X273437....    50   2e-04
AC132491_7(AC132491|pid:none) Oryza sativa (japonica cultivar-gr...    50   2e-04
AY497868_1(AY497868|pid:none) Rivulus marmoratus isolate Rm_A1_1...    50   2e-04
AM481862_1(AM481862|pid:none) Vitis vinifera contig VV78X271043....    50   2e-04
AM447111_5(AM447111|pid:none) Vitis vinifera contig VV78X219674....    50   2e-04
AM467695_5(AM467695|pid:none) Vitis vinifera contig VV78X054113....    50   2e-04
AM476387_1(AM476387|pid:none) Vitis vinifera contig VV78X142214....    50   2e-04
AC136450_9(AC136450|pid:none) Medicago truncatula clone mth2-34d...    50   2e-04
AC148360_7(AC148360|pid:none) Medicago truncatula clone mth2-27i...    50   2e-04
AM477000_3(AM477000|pid:none) Vitis vinifera contig VV78X073073....    50   2e-04
AB097137_2(AB097137|pid:none) Tetraodon nigroviridis retrotransp...    50   2e-04
AC137546_16(AC137546|pid:none) Medicago truncatula clone mth2-24...    50   2e-04
AB018120_9(AB018120|pid:none) Arabidopsis thaliana genomic DNA, ...    50   3e-04
AM425204_3(AM425204|pid:none) Vitis vinifera contig VV78X128797....    50   3e-04
AK229858_1(AK229858|pid:none) Arabidopsis thaliana mRNA for hypo...    50   3e-04
AM448435_4(AM448435|pid:none) Vitis vinifera contig VV78X199971....    50   3e-04
AM443937_1(AM443937|pid:none) Vitis vinifera contig VV78X150239....    50   3e-04
AM471057_3(AM471057|pid:none) Vitis vinifera contig VV78X197611....    49   4e-04
AC135565_13(AC135565|pid:none) Medicago truncatula clone mth2-19...    49   4e-04
AC135415_5(AC135415|pid:none) Medicago truncatula clone mth2-10b...    49   4e-04
AM437921_3(AM437921|pid:none) Vitis vinifera contig VV78X083209....    49   4e-04
AM431356_1(AM431356|pid:none) Vitis vinifera contig VV78X056160....    49   4e-04
AM466592_1(AM466592|pid:none) Vitis vinifera contig VV78X273584....    49   4e-04
AC146562_25(AC146562|pid:none) Medicago truncatula clone mth2-14...    49   4e-04
AC151708_18(AC151708|pid:none) Medicago truncatula clone mth2-15...    49   4e-04
AY497860_1(AY497860|pid:none) Menidia beryllina isolate Mb_A1_26...    49   5e-04
AM470881_2(AM470881|pid:none) Vitis vinifera contig VV78X087375....    49   5e-04
AC148340_18(AC148340|pid:none) Medicago truncatula chromosome 2 ...    49   5e-04
AJ319752_2(AJ319752|pid:none) Yarrowia lipolytica non-LTR retrot...    49   5e-04
AF466202_16(AF466202|pid:none) Zea mays putative pol protein gen...    49   5e-04
AM431522_2(AM431522|pid:none) Vitis vinifera contig VV78X162797....    49   5e-04
AC152423_3(AC152423|pid:none) Medicago truncatula clone mth2-31c...    49   5e-04
AC121246_4(AC121246|pid:none) Medicago truncatula clone mth2-35m...    49   5e-04
CR382129_127(CR382129|pid:none) Yarrowia lipolytica strain CLIB1...    49   5e-04
AC174468_6(AC174468|pid:none) Medicago truncatula chromosome 2 c...    49   5e-04
CR382127_226(CR382127|pid:none) Yarrowia lipolytica strain CLIB1...    49   5e-04
AL662952_14(AL662952|pid:none) Oryza sativa genomic DNA, chromos...    49   5e-04
AC124962_10(AC124962|pid:none) Medicago truncatula clone mth2-24...    49   5e-04
AM450819_3(AM450819|pid:none) Vitis vinifera contig VV78X205932....    49   5e-04
AC119409_9(AC119409|pid:none) Medicago truncatula clone mth2-10i...    49   5e-04
T28828(T28828)hypothetical protein F20B4.7 - Caenorhabditis eleg...    49   6e-04
AC145219_28(AC145219|pid:none) Medicago truncatula clone mth2-6m...    49   6e-04
AC147430_15(AC147430|pid:none) Medicago truncatula clone mth2-71...    49   6e-04
C87861(C87861)protein F43G9.7 [imported] - Caenorhabditis elegans      49   6e-04
AC007509_5(AC007509|pid:none) Arabidopsis thaliana chromosome 2 ...    49   6e-04
T15589(T15589)hypothetical protein C24A3.7 - Caenorhabditis eleg...    49   6e-04
AM485155_2(AM485155|pid:none) Vitis vinifera contig VV78X274924....    49   6e-04
S68633(S68633;T15436)hypothetical protein - Caenorhabditis elega...    49   6e-04
T21233(T21233)hypothetical protein F22B3.6 - Caenorhabditis eleg...    49   6e-04
H88671(H88671)protein F28E10.3 [imported] - Caenorhabditis elegans     49   6e-04
T24639(T24639)hypothetical protein T07C12.2 - Caenorhabditis ele...    49   6e-04
A88495(A88495)protein C06E8.4 [imported] - Caenorhabditis elegans      49   6e-04
T32739(T32739)hypothetical protein F54D7.1 - Caenorhabditis eleg...    49   6e-04
AM450460_1(AM450460|pid:none) Vitis vinifera contig VV78X242107....    49   6e-04
AM469512_1(AM469512|pid:none) Vitis vinifera contig VV78X063211....    49   6e-04
AM436489_1(AM436489|pid:none) Vitis vinifera contig VV78X120192....    49   6e-04
T32344(T32344)hypothetical protein C08F1.9 - Caenorhabditis eleg...    49   6e-04
AM432274_2(AM432274|pid:none) Vitis vinifera contig VV78X112647....    49   6e-04
AC091233_20(AC091233|pid:none) Oryza sativa chromosome 3 BAC OSJ...    48   8e-04
AM465392_4(AM465392|pid:none) Vitis vinifera contig VV78X218464....    48   8e-04
AB097121_1(AB097121|pid:none) Ciona intestinalis retrotransposon...    48   8e-04
AM438172_1(AM438172|pid:none) Vitis vinifera contig VV78X257147....    48   8e-04
AM486190_1(AM486190|pid:none) Vitis vinifera contig VV78X000824....    48   8e-04
AM430741_2(AM430741|pid:none) Vitis vinifera contig VV78X278196....    48   8e-04
AC079679_3(AC079679|pid:none) Arabidopsis thaliana chromosome 1 ...    48   8e-04
AM474896_3(AM474896|pid:none) Vitis vinifera contig VV79X001698....    48   8e-04
AC146341_30(AC146341|pid:none) Medicago truncatula clone mth2-10...    48   8e-04
AB028617_12(AB028617|pid:none) Arabidopsis thaliana genomic DNA,...    48   8e-04
AC007018_6(AC007018|pid:none) Arabidopsis thaliana chromosome 2 ...    48   8e-04
AM477125_3(AM477125|pid:none) Vitis vinifera contig VV78X055182....    48   8e-04
AM468072_5(AM468072|pid:none) Vitis vinifera contig VV78X275177....    48   8e-04
AC153725_14(AC153725|pid:none) Medicago truncatula clone mth2-78...    48   8e-04
AM480277_2(AM480277|pid:none) Vitis vinifera contig VV78X110525....    48   0.001
AC151742_29(AC151742|pid:none) Medicago truncatula clone mth2-83...    48   0.001
AY497841_1(AY497841|pid:none) Fundulus heteroclitus isolate FP2_...    48   0.001
AM441717_1(AM441717|pid:none) Vitis vinifera contig VV78X067425....    48   0.001
AC153123_16(AC153123|pid:none) Medicago truncatula clone mte1-72...    48   0.001
T29335(T29335)hypothetical protein F44E8.1 - Caenorhabditis eleg...    48   0.001
AM482702_2(AM482702|pid:none) Vitis vinifera contig VV78X046722....    48   0.001
AF077409_7(AF077409|pid:none) Arabidopsis thaliana BAC T24M8.  &...    48   0.001
AC146909_27(AC146909|pid:none) Medicago truncatula clone mth2-57...    48   0.001
AM460806_1(AM460806|pid:none) Vitis vinifera contig VV78X222441....    48   0.001
AC122160_17(AC122160|pid:none) Medicago truncatula clone mth2-23...    47   0.001
AM428574_2(AM428574|pid:none) Vitis vinifera contig VV78X201224....    47   0.001
AM485733_1(AM485733|pid:none) Vitis vinifera contig VV78X248603....    47   0.001
AF058914_2(AF058914|pid:none) Arabidopsis thaliana BAC F21E10, c...    47   0.001
AM440058_1(AM440058|pid:none) Vitis vinifera contig VV78X096025....    47   0.001
AM465838_1(AM465838|pid:none) Vitis vinifera contig VV78X225194....    47   0.001
AF016663_5(AF016663|pid:none) Caenorhabditis elegans cosmid F21E...    47   0.001
AC169120_8(AC169120|pid:none) Medicago truncatula clone mth2-84o...    47   0.001
AC128644_11(AC128644|pid:none) Oryza sativa (japonica cultivar-g...    47   0.001
AM436605_3(AM436605|pid:none) Vitis vinifera contig VV78X054887....    47   0.001
AC135102_34(AC135102|pid:none) Medicago truncatula clone mth2-8m...    47   0.001
AM469842_1(AM469842|pid:none) Vitis vinifera contig VV78X177955....    47   0.001
AL138652_5(AL138652|pid:none) Arabidopsis thaliana DNA chromosom...    47   0.001
AM485155_1(AM485155|pid:none) Vitis vinifera contig VV78X274924....    47   0.002
CR855120_9(CR855120|pid:none) Oryza sativa (indica cultivar-grou...    47   0.002
AC113336_23(AC113336|pid:none) Genomic sequence for Oryza sativa...    47   0.002
AC137701_4(AC137701|pid:none) Medicago truncatula clone mth2-35h...    47   0.002
AM478628_2(AM478628|pid:none) Vitis vinifera contig VV78X265481....    47   0.002
AC146341_14(AC146341|pid:none) Medicago truncatula clone mth2-10...    47   0.002
AC151673_3(AC151673|pid:none) Medicago truncatula clone mth2-2k1...    47   0.002
AM428732_3(AM428732|pid:none) Vitis vinifera contig VV78X254410....    47   0.002
AC120989_6(AC120989|pid:none) Oryza sativa (japonica cultivar-gr...    47   0.002
AL731596_19(AL731596|pid:none) Oryza sativa genomic DNA, chromos...    47   0.002
AM487850_1(AM487850|pid:none) Vitis vinifera contig VV78X084755....    47   0.002
AM436451_3(AM436451|pid:none) Vitis vinifera contig VV78X089906....    47   0.002
AM481002_3(AM481002|pid:none) Vitis vinifera contig VV78X251953....    47   0.002
AM462064_3(AM462064|pid:none) Vitis vinifera contig VV78X065686....    47   0.002
AC155228_12(AC155228|pid:none) Medicago truncatula clone mth2-13...    47   0.002
AC124956_20(AC124956|pid:none) Medicago truncatula clone mth2-14...    47   0.002
AM427163_1(AM427163|pid:none) Vitis vinifera contig VV78X001759....    47   0.002
AM432116_2(AM432116|pid:none) Vitis vinifera contig VV78X113208....    47   0.002
AC146564_1(AC146564|pid:none) Medicago truncatula clone mth2-67l...    47   0.002
AC152405_20(AC152405|pid:none) Medicago truncatula clone mth2-49...    47   0.002
AC007915_21(AC007915|pid:none) Genomic sequence for Arabidopsis ...    47   0.002
AM474436_1(AM474436|pid:none) Vitis vinifera contig VV78X241065....    47   0.002
AC096855_26(AC096855|pid:none) Oryza sativa chromosome 3 BAC OJ1...    46   0.003
AB097124_1(AB097124|pid:none) Ciona intestinalis retrotransposon...    46   0.003
AM423854_1(AM423854|pid:none) Vitis vinifera contig VV78X161973....    46   0.003
AC137078_2(AC137078|pid:none) Medicago truncatula clone mth2-10e...    46   0.003
AC147405_12(AC147405|pid:none) Medicago truncatula clone mth2-14...    46   0.003
AC124955_21(AC124955|pid:none) Medicago truncatula clone mth2-12...    46   0.003
AL662961_12(AL662961|pid:none) Oryza sativa genomic DNA, chromos...    46   0.004
AC004483_5(AC004483|pid:none) Arabidopsis thaliana chromosome 2 ...    46   0.004
DQ008121_1(DQ008121|pid:none) Schistosoma mansoni transposon non...    46   0.004
AM475519_1(AM475519|pid:none) Vitis vinifera contig VV78X024119....    46   0.004
AM478526_2(AM478526|pid:none) Vitis vinifera contig VV78X079656....    46   0.004
AC004133_24(AC004133|pid:none) Genomic sequence for Arabidopsis ...    46   0.004
AM482790_2(AM482790|pid:none) Vitis vinifera contig VV78X019098....    46   0.004
AM471855_2(AM471855|pid:none) Vitis vinifera contig VV78X019880....    46   0.004
AL662987_7(AL662987|pid:none) Oryza sativa genomic DNA, chromoso...    46   0.004
AX881970_1(AX881970|pid:none) Sequence 16875 from Patent EP10746...    45   0.005
AC152176_11(AC152176|pid:none) Medicago truncatula clone mth2-65...    45   0.005
AF527807_6(AF527807|pid:none) Sorghum bicolor clone BAC SB_BBc01...    45   0.005
AC157506_14(AC157506|pid:none) Medicago truncatula chromosome 7 ...    45   0.007
AM461019_1(AM461019|pid:none) Vitis vinifera contig VV78X123860....    45   0.007
AC124971_9(AC124971|pid:none) Medicago truncatula clone mth2-22h...    45   0.007
AM455848_1(AM455848|pid:none) Vitis vinifera contig VV78X234049....    45   0.007
AM463794_2(AM463794|pid:none) Vitis vinifera contig VV78X185588....    45   0.007
AM488110_1(AM488110|pid:none) Vitis vinifera contig VV78X127507....    45   0.007
AC135100_21(AC135100|pid:none) Medicago truncatula clone mth2-17...    45   0.007
AB097148_2(AB097148|pid:none) Anopheles gambiae retrotransposon ...    45   0.007
AC097447_2(AC097447|pid:none) Oryza sativa (japonica cultivar-gr...    45   0.007
AM428161_1(AM428161|pid:none) Vitis vinifera contig VV78X172799....    45   0.007
AM462910_3(AM462910|pid:none) Vitis vinifera contig VV78X047352....    45   0.007
AM472760_6(AM472760|pid:none) Vitis vinifera contig VV78X025654....    45   0.007
AY809983_1(AY809983|pid:none) Schistosoma japonicum SJCHGC09318 ...    45   0.009
AM452507_1(AM452507|pid:none) Vitis vinifera contig VV78X068864....    45   0.009
AM482737_1(AM482737|pid:none) Vitis vinifera contig VV78X179365....    45   0.009
AF080118_20(AF080118|pid:none) Arabidopsis thaliana BAC F8M12.  ...    45   0.009
AC152407_17(AC152407|pid:none) Medicago truncatula clone mth2-77...    45   0.009
AB028611_16(AB028611|pid:none) Arabidopsis thaliana genomic DNA,...    45   0.009
AC169788_29(AC169788|pid:none) Medicago truncatula clone mth2-28...    45   0.009
AB097122_1(AB097122|pid:none) Ciona intestinalis retrotransposon...    45   0.009
AL049525_4(AL049525|pid:none) Arabidopsis thaliana DNA chromosom...    45   0.009
AM475086_1(AM475086|pid:none) Vitis vinifera contig VV78X178259....    45   0.009
AY204504_1(AY204504|pid:none) Salmonella typhimurium class I int...    45   0.009
H44490(H44490;C40442)retrovirus-related reverse transcriptase ho...    45   0.009
AC157503_3(AC157503|pid:none) Medicago truncatula chromosome 2 c...    45   0.009
(Q03274) RecName: Full=Retrovirus-related Pol polyprotein from t...    45   0.009
AC150845_45(AC150845|pid:none) Medicago truncatula clone mth2-15...    45   0.009
AM465796_1(AM465796|pid:none) Vitis vinifera contig VV78X176488....    44   0.012
EF113399_1(EF113399|pid:none) Ostrinia nubilalis reverse transcr...    44   0.012
AM478721_1(AM478721|pid:none) Vitis vinifera contig VV78X004225....    44   0.012
AM489015_1(AM489015|pid:none) Vitis vinifera contig VV78X147904....    44   0.012
AM444417_1(AM444417|pid:none) Vitis vinifera contig VV78X180567....    44   0.012
AC140721_8(AC140721|pid:none) Medicago truncatula clone mth2-16c...    44   0.012
AM488068_3(AM488068|pid:none) Vitis vinifera contig VV78X124178....    44   0.012
AC137829_14(AC137829|pid:none) Medicago truncatula clone mth2-34...    44   0.012
AM470050_2(AM470050|pid:none) Vitis vinifera contig VV79X004828....    44   0.012
AK126793_1(AK126793|pid:none) Homo sapiens cDNA FLJ44843 fis, cl...    44   0.012
AM452504_1(AM452504|pid:none) Vitis vinifera contig VV78X267502....    44   0.012
AM477849_2(AM477849|pid:none) Vitis vinifera contig VV78X098823....    44   0.012
AM487494_1(AM487494|pid:none) Vitis vinifera contig VV78X197132....    44   0.016
EF113398_1(EF113398|pid:none) Ostrinia nubilalis reverse transcr...    44   0.016
AM487157_1(AM487157|pid:none) Vitis vinifera contig VV78X047840....    44   0.016
AC084818_14(AC084818|pid:none) Oryza sativa (japonica cultivar-g...    44   0.016
AC134242_28(AC134242|pid:none) Medicago truncatula clone mth2-10...    44   0.016
AC137829_11(AC137829|pid:none) Medicago truncatula clone mth2-34...    44   0.016
AC136971_20(AC136971|pid:none) Oryza sativa (japonica cultivar-g...    44   0.016
AM455577_2(AM455577|pid:none) Vitis vinifera contig VV78X164747....    44   0.016
AC143339_17(AC143339|pid:none) Medicago truncatula clone mth2-20...    44   0.020
AC146816_17(AC146816|pid:none) Oryza sativa (japonica cultivar-g...    44   0.020
AM476833_1(AM476833|pid:none) Vitis vinifera contig VV78X075937....    44   0.020
AP008213_90(AP008213|pid:none) Oryza sativa (japonica cultivar-g...    44   0.020
CR933497_15(CR933497|pid:none) Oryza sativa (japonica cultivar-g...    44   0.020
AJ302712_2(AJ302712|pid:none) Drosophila melanogaster transposon...    44   0.020
AY497862_1(AY497862|pid:none) Rivulus marmoratus isolate Rm_A1_1...    44   0.020
AC104433_31(AC104433|pid:none) Oryza sativa chromosome 3 BAC OJ1...    44   0.020
AM471427_2(AM471427|pid:none) Vitis vinifera contig VV78X275549....    44   0.020
AC144343_28(AC144343|pid:none) Medicago truncatula clone mth2-12...    44   0.020
AM459135_1(AM459135|pid:none) Vitis vinifera contig VV78X126341....    44   0.020
AM482216_1(AM482216|pid:none) Vitis vinifera contig VV78X053803....    43   0.027
AM479135_2(AM479135|pid:none) Vitis vinifera contig VV78X018713....    43   0.027
AK229033_1(AK229033|pid:none) Arabidopsis thaliana mRNA for puta...    43   0.027
AM428343_2(AM428343|pid:none) Vitis vinifera contig VV78X194729....    43   0.027
AC153125_30(AC153125|pid:none) Medicago truncatula clone mth2-74...    43   0.027
AM479841_1(AM479841|pid:none) Vitis vinifera contig VV78X267372....    43   0.027
AM465028_6(AM465028|pid:none) Vitis vinifera contig VV78X105028....    43   0.027
AM464451_1(AM464451|pid:none) Vitis vinifera contig VV78X106698....    43   0.027
AM452529_1(AM452529|pid:none) Vitis vinifera contig VV78X077053....    43   0.027
AM429580_1(AM429580|pid:none) Vitis vinifera contig VV78X131936....    43   0.027
AB011485_8(AB011485|pid:none) Arabidopsis thaliana genomic DNA, ...    43   0.027
AM424116_1(AM424116|pid:none) Vitis vinifera contig VV78X253426....    43   0.027
AC135564_13(AC135564|pid:none) Oryza sativa chromosome 3 BAC OSJ...    43   0.027
AC097367_11(AC097367|pid:none) Oryza sativa chromosome 3 BAC OSJ...    43   0.027
AC005315_6(AC005315|pid:none) Arabidopsis thaliana chromosome 2 ...    43   0.027
AM450267_4(AM450267|pid:none) Vitis vinifera contig VV78X266870....    43   0.027
AM459345_1(AM459345|pid:none) Vitis vinifera contig VV78X244999....    43   0.027
AM463833_1(AM463833|pid:none) Vitis vinifera contig VV78X221294....    43   0.027
AC149546_3(AC149546|pid:none) Medicago truncatula clone mth2-70o...    43   0.035
AC146755_18(AC146755|pid:none) Medicago truncatula clone mth2-15...    43   0.035
AM429362_1(AM429362|pid:none) Vitis vinifera contig VV78X247281....    43   0.035
AL606694_8(AL606694|pid:none) Oryza sativa genomic DNA, chromoso...    43   0.035
AC174351_18(AC174351|pid:none) Medicago truncatula clone mth2-7h...    43   0.035
AM488632_1(AM488632|pid:none) Vitis vinifera contig VV78X094886....    43   0.035
AC105320_12(AC105320|pid:none) Oryza sativa (japonica cultivar-g...    43   0.035
AM448842_2(AM448842|pid:none) Vitis vinifera contig VV78X109940....    43   0.035
AF015815_1(AF015815|pid:none) Anurida maritima retrotransposon R...    43   0.035
AM423592_1(AM423592|pid:none) Vitis vinifera contig VV78X152982....    42   0.046
AM461156_3(AM461156|pid:none) Vitis vinifera contig VV78X199498....    42   0.046
AC122165_6(AC122165|pid:none) Medicago truncatula clone mth2-32m...    42   0.046
AC136953_2(AC136953|pid:none) Medicago truncatula clone mth2-20h...    42   0.046
AC148219_14(AC148219|pid:none) Medicago truncatula clone mth2-21...    42   0.046
AC152406_13(AC152406|pid:none) Medicago truncatula clone mth2-71...    42   0.046
AM439733_1(AM439733|pid:none) Vitis vinifera contig VV78X109517....    42   0.046
AM459791_5(AM459791|pid:none) Vitis vinifera contig VV78X112489....    42   0.060
AM431263_4(AM431263|pid:none) Vitis vinifera contig VV78X265007....    42   0.060
AC149304_4(AC149304|pid:none) Medicago truncatula clone mth2-76g...    42   0.060
AC174351_12(AC174351|pid:none) Medicago truncatula clone mth2-7h...    42   0.060
AC134322_4(AC134322|pid:none) Medicago truncatula clone mth2-17i...    42   0.060
AC147498_19(AC147498|pid:none) Medicago truncatula clone mth2-6f...    42   0.060
CR855229_19(CR855229|pid:none) Oryza sativa genomic DNA, chromos...    42   0.060
AM434514_1(AM434514|pid:none) Vitis vinifera contig VV78X173099....    42   0.060
AX878771_1(AX878771|pid:none) Sequence 13676 from Patent EP10746...    42   0.060
AC005970_17(AC005970|pid:none) Arabidopsis thaliana chromosome 2...    42   0.060
AC140549_21(AC140549|pid:none) Medicago truncatula clone mth2-28...    42   0.060
AM484735_5(AM484735|pid:none) Vitis vinifera contig VV78X213655....    42   0.060
AM473328_1(AM473328|pid:none) Vitis vinifera contig VV78X049177....    42   0.060
AM438944_1(AM438944|pid:none) Vitis vinifera contig VV78X021237....    42   0.060
AM437481_3(AM437481|pid:none) Vitis vinifera contig VV78X119142....    42   0.060
AM446553_2(AM446553|pid:none) Vitis vinifera contig VV78X151904....    42   0.060
AM430793_1(AM430793|pid:none) Vitis vinifera contig VV78X207894....    42   0.078
AM488595_1(AM488595|pid:none) Vitis vinifera contig VV78X131611....    42   0.078
AC147498_25(AC147498|pid:none) Medicago truncatula clone mth2-6f...    42   0.078
AM483414_1(AM483414|pid:none) Vitis vinifera contig VV78X141300....    42   0.078

>AF298209_2(AF298209|pid:none) Dictyostelium discoideum non-LTR
            retrotransposon TRE5-B, group-specific antigen (gag) and
            polyprotein (pol) genes, complete cds.
          Length = 1144

 Score =  588 bits (1515), Expect = e-166
 Identities = 299/343 (87%), Positives = 308/343 (89%), Gaps = 7/343 (2%)
 Frame = +2

Query: 2    FPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRK 181
            FPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRK
Sbjct: 594  FPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRK 653

Query: 182  DNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCI 361
            DNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCI
Sbjct: 654  DNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCI 713

Query: 362  TKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRI 541
            TKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRI
Sbjct: 714  TKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRI 773

Query: 542  TILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWN 721
            TILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWN
Sbjct: 774  TILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWN 833

Query: 722  MATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAXXXXNRSKTD 901
            MATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKA    +
Sbjct: 834  MATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLH----- 888

Query: 902  SKEH*SPNSTI*RSQINHNYQRK-------RLSMEVSTQGTSK 1009
               H     T+  +Q+   Y+ K       R  M++  +G +K
Sbjct: 889  ---HPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNK 928

 Score =  441 bits (1134), Expect = e-122
 Identities = 210/212 (99%), Positives = 212/212 (100%)
 Frame = +3

Query: 885  TGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHI 1064
            TGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHI
Sbjct: 933  TGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHI 992

Query: 1065 FFECKSIKQDIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQ 1244
            FFECKSIKQ+IDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQ
Sbjct: 993  FFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQ 1052

Query: 1245 IKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELKCTDNRESINRTASIKRR 1424
            IKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQEL+CTDNRESINRTASIKRR
Sbjct: 1053 IKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRR 1112

Query: 1425 LEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS 1520
            LEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS
Sbjct: 1113 LEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS 1144

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,745,579,137
Number of extensions: 58177324
Number of successful extensions: 153310
Number of sequences better than 10.0: 736
Number of HSP's gapped: 153126
Number of HSP's successfully gapped: 748
Length of query: 506
Length of database: 1,051,180,864
Length adjustment: 133
Effective length of query: 373
Effective length of database: 620,718,517
Effective search space: 231528006841
Effective search space used: 231528006841
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

 psg: 0.86  gvh: 0.51  alm: 0.36  top: 0.40  tms: 0.00  mit: 0.48  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: mitochondrial
	 16.0 %: cytoplasmic
	  8.0 %: extracellular, including cell wall
	  8.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar

>> prediction for Contig-U00354-1 is mit