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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U09459-1
Contig ID Contig-U09459-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U09459-1 (Contig-U09459-1Q) /CSM_Contig/Contig-U09459-1Q.Seq.d
ATAGGTTTGCTTGTTATATAATAAACAATAACAACAATAGTTGATATTTG
AAAGATAGATTGATAGACTATTTACACAATTTTTTATTTTTTTCTTTTTT
AAAAAAAAATATTAATTTTAAATATATAAATATAAAAAAATTATTTCTAT
AATAATAGTAACATAACTAAAAAAAAAAAAAATAAAATAAAAAAAAAAAA
TAAAAAAAACAACAATAATAAAATTTTTTTAAATTATAAAAAATAAATAA
ATAAATAAATAAATTAAAAATG----------CATTAGTTTTAAGAGTTC
CAAAGTTGATCAAGCACCAATTAAAGAGGCATTCAATCAATTTGGTGTTG
TTTCCAATGTTAGAATTCTTACCGGTTATGGATTTGTTGAATTTGAAAAA
CCTGAATCAGTCCAAAATGCTTTAAACTATGCATCAACTCATAGTAATAA
AATTAATGTTGCTGGTAATATAATTAAAGTCGAAGAAAGAAGAGGTGCTT
TACCAACTGGAAAACAACAACGGCAATCACCACCATCATCATCATCATCA
CCTTCATCATCACAACCATTAAAACAACAACCACAACAACCATATAAAAG
ACAACCACAAAATAATGGCGCAATTAATTTAAAATATAATAATCAACAAA
ATAAACCAAATTTAAATGGTTATAATTTTAATAATAATAATAATAATAAT
AACAACAATAATAGTAATAATCAAAATAATTTTAGAAAACCTCAAAAAGT
TGATAATAAAAAAGAAGCATCCAAATAACCTTTTGATACATAAATTAAAT
ATATAAACAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gap gap included
Contig length 832
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 53898
End point 54662
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U09459
List of clone(s) 

est1=SSJ737F,1,273
est2=SSJ737Z,274,834
Translated Amino Acid sequence 
rfacyiinnnnns*ylkdrlidylhnflffsflkkninfkyinikklfl****hn*kkkk
*nkkkk*kkqq**nffkl*kink*INKLKM---

---ISFKSSKVDQAPIKEAFNQFGVVSNVRILTGYGFVEFEKPESVQNALNYASTHSNKI
NVAGNIIKVEERRGALPTGKQQRQSPPSSSSSPSSSQPLKQQPQQPYKRQPQNNGAINLK
YNNQQNKPNLNGYNFNNNNNNNNNNNSNNQNNFRKPQKVDNKKEASK*pfdt*ikyinnk
kkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
igllvi**tittivdi*kid**tiytifyfflf*kkililni*i*knyfynnsnitkkkk
nkikkknkknnnnkiflnykk*ink*in*k---

---h*f*efqs*sstn*rgiqsiwccfqc*nsyrlwic*i*kt*ispkcfklcins***n
*ccw*yn*srrkkrcftnwktttaittiiiiitfiittiktttttti*ktttk*wrn*fk
i**stk*tkfkwl*f********qq****sk*f*ktsks***krsiqitf*yin*iykqq
kkkkkkkkk

Frame B:
*vcllynkq*qq*lifer*idrlftqffiffffkkky*f*iykykkiisiiivt*lkkkk
ik*kkkikkttiikff*iiknk*ink*ikn---

---ISFKSSKVDQAPIKEAFNQFGVVSNVRILTGYGFVEFEKPESVQNALNYASTHSNKI
NVAGNIIKVEERRGALPTGKQQRQSPPSSSSSPSSSQPLKQQPQQPYKRQPQNNGAINLK
YNNQQNKPNLNGYNFNNNNNNNNNNNSNNQNNFRKPQKVDNKKEASK*pfdt*ikyinnk
kkkkkkkkk

Frame C:
rfacyiinnnnns*ylkdrlidylhnflffsflkkninfkyinikklfl****hn*kkkk
*nkkkk*kkqq**nffkl*kink*INKLKM---

---lvlrvpklikhqlkrhsinlvlfpmleflpvmdllnlknlnqskml*tmhqlivikl
mllvi*lkskkeevlyqlennngnhhhhhhhhlhhhnh*nnnhnnhikdnhkimaqli*n
iiinkinqi*mviiliiiiiiittiiviikiilenlkkliikkkhpnnllihklni*ttk
kkkkkkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U09459-1 (Contig-U09459-1Q)
/CSM_Contig/Contig-U09459-1Q.Seq.d
         (842 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09459-1 (Contig-U09459-1Q) /CSM_Contig/Conti...   482  e-136
Contig-U05416-1 (Contig-U05416-1Q) /CSM_Contig/Conti...    48  2e-05
Contig-U14746-1 (Contig-U14746-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U13138-1 (Contig-U13138-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U12826-1 (Contig-U12826-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U11246-1 (Contig-U11246-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U11145-1 (Contig-U11145-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U09043-1 (Contig-U09043-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U04162-1 (Contig-U04162-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U04133-1 (Contig-U04133-1Q) /CSM_Contig/Conti...    40  0.004

>Contig-U09459-1 (Contig-U09459-1Q) /CSM_Contig/Contig-U09459-1Q.Seq.d
          Length = 842

 Score =  482 bits (243), Expect = e-136
 Identities = 243/243 (100%)
 Strand = Plus / Plus

                                                                       
Query: 283 cattagttttaagagttccaaagttgatcaagcaccaattaaagaggcattcaatcaatt 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 cattagttttaagagttccaaagttgatcaagcaccaattaaagaggcattcaatcaatt 342

                                                                       
Query: 343 tggtgttgtttccaatgttagaattcttaccggttatggatttgttgaatttgaaaaacc 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tggtgttgtttccaatgttagaattcttaccggttatggatttgttgaatttgaaaaacc 402

                                                                       
Query: 403 tgaatcagtccaaaatgctttaaactatgcatcaactcatagtaataaaattaatgttgc 462
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tgaatcagtccaaaatgctttaaactatgcatcaactcatagtaataaaattaatgttgc 462

                                                                       
Query: 463 tggtaatataattaaagtcgaagaaagaagaggtgctttaccaactggaaaacaacaacg 522
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tggtaatataattaaagtcgaagaaagaagaggtgctttaccaactggaaaacaacaacg 522

              
Query: 523 gca 525
           |||
Sbjct: 523 gca 525


 Score =  161 bits (81), Expect = 2e-39
 Identities = 81/81 (100%)
 Strand = Plus / Plus

                                                                       
Query: 731 tttagaaaacctcaaaaagttgataataaaaaagaagcatccaaataaccttttgataca 790
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tttagaaaacctcaaaaagttgataataaaaaagaagcatccaaataaccttttgataca 790

                                
Query: 791 taaattaaatatataaacaac 811
           |||||||||||||||||||||
Sbjct: 791 taaattaaatatataaacaac 811


 Score =  157 bits (79), Expect = 2e-38
 Identities = 79/79 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ataggtttgcttgttatataataaacaataacaacaatagttgatatttgaaagatagat 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ataggtttgcttgttatataataaacaataacaacaatagttgatatttgaaagatagat 60

                             
Query: 61 tgatagactatttacacaa 79
          |||||||||||||||||||
Sbjct: 61 tgatagactatttacacaa 79


 Score = 91.7 bits (46), Expect = 1e-18
 Identities = 46/46 (100%)
 Strand = Plus / Plus

                                                         
Query: 563 caaccattaaaacaacaaccacaacaaccatataaaagacaaccac 608
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 caaccattaaaacaacaaccacaacaaccatataaaagacaaccac 608


>Contig-U05416-1 (Contig-U05416-1Q) /CSM_Contig/Contig-U05416-1Q.Seq.d
          Length = 334

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 563 caaccattaaaacaacaaccacaacaac 590
           |||||||||||| |||||||||||||||
Sbjct: 3   caaccattaaaaaaacaaccacaacaac 30


 Score = 32.2 bits (16), Expect = 0.92
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 571 aaaacaacaaccacaacaac 590
           ||||||||||| ||||||||
Sbjct: 163 aaaacaacaacaacaacaac 182


>Contig-U14746-1 (Contig-U14746-1Q) /CSM_Contig/Contig-U14746-1Q.Seq.d
          Length = 1124

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 573 aacaacaaccacaacaacca 592
           ||||||||||||||||||||
Sbjct: 179 aacaacaaccacaacaacca 198


 Score = 38.2 bits (19), Expect = 0.015
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 574 acaacaaccacaacaacca 592
           |||||||||||||||||||
Sbjct: 189 acaacaaccacaacaacca 207


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,963
Number of Sequences: 6905
Number of extensions: 10963
Number of successful extensions: 1751
Number of sequences better than 10.0: 364
length of query: 842
length of database: 5,674,871
effective HSP length: 16
effective length of query: 826
effective length of database: 5,564,391
effective search space: 4596186966
effective search space used: 4596186966
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.16
Homology vs DNA 
Query= Contig-U09459-1 (Contig-U09459-1Q) /CSM_Contig/Contig-U09459-1Q.Seq.d
         (842 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C91275) Dictyostelium discoideum slug cDNA, clone SSJ737.        482   e-162  3
(AU074186) Dictyostelium discoideum slug cDNA, clone SSJ737.      157   2e-34  2
(AC113919) Rattus norvegicus clone CH230-54B9, *** SEQUENCIN...    50   0.14   1
(AC110487) Rattus norvegicus clone CH230-79D1, WORKING DRAFT...    50   0.14   1
(AC097052) Rattus norvegicus clone CH230-214M15, WORKING DRA...    50   0.14   1
(DQ445604) Anopheles sinensis isolate Thai_2 control region,...    34   0.22   3
(DQ445603) Anopheles sinensis isolate Thai_1 control region,...    34   0.22   3
(DQ445599) Anopheles sinensis isolate Hap_57_YC22 control re...    34   0.22   3
(DQ445597) Anopheles sinensis isolate Hap_55_SR06 control re...    34   0.22   3
(DQ445594) Anopheles sinensis isolate Hap_52_PJ16 control re...    34   0.22   3
(DQ445593) Anopheles sinensis isolate Hap_51_PJ11 control re...    34   0.22   3
(DQ445592) Anopheles sinensis isolate Hap_50_PJ04 control re...    34   0.22   3
(DQ445590) Anopheles sinensis isolate Hap_48_NA12 control re...    34   0.22   3
(DQ445589) Anopheles sinensis isolate Hap_47_NA11 control re...    34   0.22   3
(DQ445588) Anopheles sinensis isolate Hap_46_NA10 control re...    34   0.22   3
(DQ445585) Anopheles sinensis isolate Hap_43_KP15 control re...    34   0.22   3
(DQ445577) Anopheles sinensis isolate Hap_35_JI09 control re...    34   0.22   3
(DQ445576) Anopheles sinensis isolate Hap_34_JI01 control re...    34   0.22   3
(DQ445575) Anopheles sinensis isolate Hap_33_JA05 control re...    34   0.22   3
(DQ445572) Anopheles sinensis isolate Hap_30_GR12 control re...    34   0.22   3
(DQ445571) Anopheles sinensis isolate Hap_29_GR07 control re...    34   0.22   3
(DQ445566) Anopheles sinensis isolate Hap_24_ER28 control re...    34   0.22   3
(DQ445561) Anopheles sinensis isolate Hap_19_ER16 control re...    34   0.22   3
(DQ445557) Anopheles sinensis isolate Hap_15_ER03 control re...    34   0.22   3
(DQ445555) Anopheles sinensis isolate Hap_13_CC12 control re...    34   0.22   3
(DQ445553) Anopheles sinensis isolate Hap_11_CC05 control re...    34   0.22   3
(DQ445551) Anopheles sinensis isolate Hap_9_AD16 control reg...    34   0.22   3
(DQ445548) Anopheles sinensis isolate Hap_6_AD09 control reg...    34   0.22   3
(DQ445546) Anopheles sinensis isolate Hap_4_AD07 control reg...    34   0.22   3
(DQ445545) Anopheles sinensis isolate Hap_3_AD06 control reg...    34   0.22   3
(DQ445544) Anopheles sinensis isolate Hap_2_BY02 control reg...    34   0.22   3
(AC127249) Mus musculus BAC clone RP24-475B8 from chromosome...    40   0.26   5
(BB451325) Mus musculus 12 days embryo spinal ganglion cDNA,...    48   0.54   1
(AW444277) AB114 Primordium cDNA library Agaricus bisporus c...    48   0.54   1
(EV810197) 030115FAAD002810HT (FAAD) Epiphyas postvittana ma...    48   0.54   1
(DQ445584) Anopheles sinensis isolate Hap_42_KP04 control re...    34   0.79   3
(DQ445582) Anopheles sinensis isolate Hap_40_JU04 control re...    34   0.79   3
(DQ445579) Anopheles sinensis isolate Hap_37_JI22 control re...    34   0.79   3
(DQ445574) Anopheles sinensis isolate Hap_32_JA01 control re...    34   0.79   3
(DQ445564) Anopheles sinensis isolate Hap_22_ER23 control re...    34   0.79   3
(DQ445562) Anopheles sinensis isolate Hap_20_ER17 control re...    34   0.79   3
(DQ445560) Anopheles sinensis isolate Hap_18_ER15 control re...    34   0.79   3
(DQ445558) Anopheles sinensis isolate Hap_16_DY13 control re...    34   0.79   3
(AC142115) Mus musculus BAC clone RP23-327M1 from 3, complet...    44   1.1    3
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    36   1.2    9
(FE781615) CCAG12167.g1 CCAG Petrolisthes cinctipes heart, g...    38   1.3    2
(FE793634) CCAG9887.g1 CCAG Petrolisthes cinctipes heart, gi...    38   1.4    2
(BQ989649) QGF18E02.yg.ab1 QG_EFGHJ lettuce serriola Lactuca...    32   1.6    3
(BX957341) Zebrafish DNA sequence from clone CH211-11N16 in ...    46   2.1    1
(BX296520) Zebrafish DNA sequence from clone RP71-4M17 in li...    46   2.1    1
(AC134094) Rattus norvegicus clone CH230-34B17, *** SEQUENCI...    46   2.1    1
(AC111815) Rattus norvegicus clone CH230-43P12, *** SEQUENCI...    46   2.1    1
(AC101589) Mus musculus clone RP23-197M24, LOW-PASS SEQUENCE...    46   2.1    1
(AC095404) Rattus norvegicus clone CH230-7B5, WORKING DRAFT ...    46   2.1    1
(CU694281) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.1    1
(AL954295) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   2.1    1
(AC230470) Bos taurus clone CH240-508H13, WORKING DRAFT SEQU...    46   2.1    1
(DE238032) Trifolium pratense DNA, clone:RCG34367.                 46   2.1    1
(DE237811) Trifolium pratense DNA, clone:RCG33894.                 46   2.1    1
(DE237790) Trifolium pratense DNA, clone:RCG33862.                 46   2.1    1
(DE235145) Trifolium pratense DNA, clone:RCG29809.                 46   2.1    1
(DE222922) Trifolium pratense DNA, clone:RCG14486.                 46   2.1    1
(DE218796) Trifolium pratense DNA, clone:RCG09595.                 46   2.1    1
(DE218021) Trifolium pratense DNA, clone:RCG08674.                 46   2.1    1
(DE216263) Trifolium pratense DNA, clone:RCG05681.                 46   2.1    1
(DE215315) Trifolium pratense DNA, clone:RCG03982.                 46   2.1    1
(DE215270) Trifolium pratense DNA, clone:RCG03928.                 46   2.1    1
(DE215115) Trifolium pratense DNA, clone:RCG03742.                 46   2.1    1
(DE215079) Trifolium pratense DNA, clone:RCG03703.                 46   2.1    1
(DE215013) Trifolium pratense DNA, clone:RCG03628.                 46   2.1    1
(DE214810) Trifolium pratense DNA, clone:RCG03372.                 46   2.1    1
(DE214777) Trifolium pratense DNA, clone:RCG03336.                 46   2.1    1
(DE214102) Trifolium pratense DNA, clone:RCG02495.                 46   2.1    1
(DE213840) Trifolium pratense DNA, clone:RCG02159.                 46   2.1    1
(DE213229) Trifolium pratense DNA, clone:RCG01403.                 46   2.1    1
(EG600067) EMBRYOF101104E9 POSSUM_01-POSSUM-C-EMBRYO-2KB Tri...    46   2.1    1
(EC288639) BRAINF089623A16 POSSUM_01-POSSUM-C-BRAIN-2KB Tric...    46   2.1    1
(DN314265) PL06017B2E02 cDNA from juvenile hermaphodites Sch...    46   2.1    1
(DN311762) PL06011A1D01 cDNA from juvenile hermaphodites Sch...    46   2.1    1
(AU073727) Dictyostelium discoideum slug cDNA, clone SSI173.       46   2.1    1
(CA981368) AGENCOURT_11281683 Wellcome CRC pSK egg Xenopus l...    46   2.1    1
(BQ733288) AGENCOURT_8214419 NICHD_XGC_Emb4 Xenopus laevis c...    46   2.1    1
(BQ731777) AGENCOURT_8222578 NICHD_XGC_Emb4 Xenopus laevis c...    46   2.1    1
(BM179678) dai10f06.y1 NICHD_XGC_Emb4 Xenopus laevis cDNA cl...    46   2.1    1
(FG311756) NB.3.10d(T3) NB Schmidtea mediterranea cDNA clone...    46   2.1    1
(AC140219) Mus musculus BAC clone RP24-270J6 from chromosome...    40   2.4    4
(DQ121051) Hucho taimen clone ZA-46 microsatellite sequence.       40   2.4    2
(DQ466099) Anopheles sinensis haplotype 9 control region, co...    34   2.5    3
(DQ466096) Anopheles sinensis haplotype 6 control region, co...    34   2.5    3
(DQ466095) Anopheles sinensis haplotype 5 control region, co...    34   2.5    3
(DQ466092) Anopheles sinensis haplotype 2 control region, co...    34   2.5    3
(DQ466091) Anopheles sinensis haplotype 1 control region, co...    34   2.5    3
(DQ466100) Anopheles sinensis haplotype 10 control region, c...    34   2.5    3
(DQ466098) Anopheles sinensis haplotype 8 control region, co...    34   2.5    3
(DQ466101) Anopheles sinensis haplotype 11 control region, c...    34   2.5    3
(DQ466094) Anopheles sinensis haplotype 4 control region, co...    34   2.5    3
(DQ466093) Anopheles sinensis haplotype 3 control region, co...    34   2.5    3
(AP003671) Mus musculus genomic DNA, chromosome 16q clone:RP...    38   3.0    4
(EB254041) CNSN01-C-006235-501 Normalized CNS library (juven...    36   3.3    2
(AC134861) Mus musculus chromosome UNK clone RP23-455K8, WOR...    40   4.8    2

>(C91275) Dictyostelium discoideum slug cDNA, clone SSJ737.
          Length = 561

 Score =  482 bits (243), Expect(3) = e-162
 Identities = 243/243 (100%)
 Strand = Plus / Plus


Query: 283 cattagttttaagagttccaaagttgatcaagcaccaattaaagaggcattcaatcaatt 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cattagttttaagagttccaaagttgatcaagcaccaattaaagaggcattcaatcaatt 60


Query: 343 tggtgttgtttccaatgttagaattcttaccggttatggatttgttgaatttgaaaaacc 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tggtgttgtttccaatgttagaattcttaccggttatggatttgttgaatttgaaaaacc 120


Query: 403 tgaatcagtccaaaatgctttaaactatgcatcaactcatagtaataaaattaatgttgc 462
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgaatcagtccaaaatgctttaaactatgcatcaactcatagtaataaaattaatgttgc 180


Query: 463 tggtaatataattaaagtcgaagaaagaagaggtgctttaccaactggaaaacaacaacg 522
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tggtaatataattaaagtcgaagaaagaagaggtgctttaccaactggaaaacaacaacg 240


Query: 523 gca 525
           |||
Sbjct: 241 gca 243

 Score = 95.6 bits (48), Expect(3) = e-162
 Identities = 48/48 (100%)
 Strand = Plus / Plus


Query: 764 gaagcatccaaataaccttttgatacataaattaaatatataaacaac 811
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gaagcatccaaataaccttttgatacataaattaaatatataaacaac 529

 Score = 56.0 bits (28), Expect(3) = e-162
 Identities = 28/28 (100%)
 Strand = Plus / Plus


Query: 564 aaccattaaaacaacaaccacaacaacc 591
           ||||||||||||||||||||||||||||
Sbjct: 282 aaccattaaaacaacaaccacaacaacc 309

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 510,818,565
Number of extensions: 34244470
Number of successful extensions: 3147516
Number of sequences better than 10.0: 168
Length of query: 842
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 818
Effective length of database: 97,308,875,965
Effective search space: 79598660539370
Effective search space used: 79598660539370
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.26
Homology vs Protein 
Query= Contig-U09459-1 (Contig-U09459-1Q) /CSM_Contig/Contig-U09459-1Q.Seq.d
         (842 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE016817_583(AE016817|pid:none) Ashbya gossypii (= Eremothecium ...    44   0.009
CR382122_36(CR382122|pid:none) Kluyveromyces lactis strain NRRL ...    42   0.019
BT081512_1(BT081512|pid:none) Rana catesbeiana clone rcat-evr-51...    42   0.033
CP000254_1523(CP000254|pid:none) Methanospirillum hungatei JF-1,...    42   0.033
CU928176_551(CU928176|pid:none) Zygosaccharomyces rouxii strain ...    41   0.056
CR380954_200(CR380954|pid:none) Candida glabrata strain CBS138 c...    41   0.056
EF586874_1(EF586874|pid:none) Clonorchis sinensis cleavage stimu...    40   0.073
DQ788634_1(DQ788634|pid:none) Squalus acanthias putative polyade...    40   0.12
AL606450_8(AL606450|pid:none) Oryza sativa genomic DNA, chromoso...    39   0.16
AY038043_1(AY038043|pid:none) Aedes aegypti putative polyadenyla...    39   0.16
AK070420_1(AK070420|pid:none) Oryza sativa Japonica Group cDNA c...    39   0.16
AM447494_2(AM447494|pid:none) Vitis vinifera contig VV78X024983....    39   0.16
DQ440228_1(DQ440228|pid:none) Aedes aegypti clone AET-265 polyad...    39   0.16
BC065323_1(BC065323|pid:none) Danio rerio GTPase activating prot...    39   0.21
BT045197_1(BT045197|pid:none) Salmo salar clone ssal-rgf-514-254...    39   0.28
BT073963_1(BT073963|pid:none) Oncorhynchus mykiss clone omyk-evo...    39   0.28
EF676472_1(EF676472|pid:none) Picea sitchensis clone WS02739_B06...    39   0.28
BT049685_1(BT049685|pid:none) Salmo salar clone ssal-rgb2-559-08...    39   0.28
U28944_7(U28944|pid:none) Caenorhabditis elegans cosmid C18A3, c...    38   0.36
T15542(T15542)hypothetical protein C18A3.5 - Caenorhabditis eleg...    38   0.36
BC071591_1(BC071591|pid:none) Homo sapiens poly(A) binding prote...    38   0.36
AC148486_19(AC148486|pid:none) Medicago truncatula clone mth2-56...    38   0.36
AL365277_14(AL365277|pid:none) Human DNA sequence from clone RP1...    38   0.36
(Q13310) RecName: Full=Polyadenylate-binding protein 4;         ...    38   0.36
D12799_1(D12799|pid:none) Homo sapiens mRNA for polyadenylate bi...    38   0.36
U28944_4(U28944|pid:none) Caenorhabditis elegans cosmid C18A3, c...    38   0.36
AC003979_7(AC003979|pid:none) Arabidopsis thaliana chromosome 1 ...    38   0.47
AY973274_1(AY973274|pid:none) Oryzias latipes Daz-like protein (...    38   0.47
AF293840_1(AF293840|pid:none) Arabidopsis thaliana poly(A) bindi...    38   0.47
(Q95ZE9) RecName: Full=Negative elongation factor E;  &AJ306692_...    38   0.47
(P92204) RecName: Full=Negative elongation factor E;  &AE014296_...    38   0.47
AC116305_12(AC116305|pid:none) Dictyostelium discoideum chromoso...    37   0.62
S37085(S37085) polyadenylate-binding protein - fern (Anemia phyl...    37   0.62
CU928171_161(CU928171|pid:none) Kluyveromyces thermotolerans str...    37   0.80
BX649404_2(BX649404|pid:none) Zebrafish DNA sequence from clone ...    37   0.80
CU928174_487(CU928174|pid:none) Zygosaccharomyces rouxii strain ...    37   0.80
AM502243_51(AM502243|pid:none) Leishmania infantum chromosome 25.      37   0.80
BX649404_1(BX649404|pid:none) Zebrafish DNA sequence from clone ...    37   0.80
AM910993_34(AM910993|pid:none) Plasmodium knowlesi strain H chro...    37   0.80
BT081322_1(BT081322|pid:none) Caligus clemensi clone ccle-evs-51...    37   0.80
CP000498_481(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...    37   1.0
AF497746_1(AF497746|pid:none) Trypanosoma cruzi U-rich RNA-bindi...    37   1.0
AY210411_2(AY210411|pid:none) Trypanosoma cruzi RNA-binding prot...    37   1.0
DQ336954_2(DQ336954|pid:none) Glycine max cultivar Williams 82 c...    37   1.0
AM490198_1(AM490198|pid:none) Rana lessonae mRNA for DAZ-like pr...    37   1.0
(P39697) RecName: Full=40S ribosomal protein S19, mitochondrial;...    37   1.0
AE016817_401(AE016817|pid:none) Ashbya gossypii (= Eremothecium ...    37   1.0
(Q05196) RecName: Full=Polyadenylate-binding protein 5;         ...    36   1.4
CP001101_100(CP001101|pid:none) Chlorobium phaeobacteroides BS1,...    36   1.4
(Q4VXU2) RecName: Full=Polyadenylate-binding protein 1-like;  &A...    36   1.4
BC003283_1(BC003283|pid:none) Mus musculus poly(A) binding prote...    36   1.4
AC002391_1(AC002391|pid:none) Arabidopsis thaliana chromosome 2 ...    36   1.4
(Q98SJ2) RecName: Full=DAZ-associated protein 1; AltName: Full=D...    36   1.4
AL606917_1(AL606917|pid:none) Mouse DNA sequence from clone RP23...    36   1.4
T51304(T51304) splicing factor RSp31 [imported] - Arabidopsis th...    36   1.4
AY785298_1(AY785298|pid:none) Caenorhabditis remanei polyadenyla...    36   1.4
AK135962_1(AK135962|pid:none) Mus musculus in vitro fertilized e...    36   1.4
AL606917_2(AL606917|pid:none) Mouse DNA sequence from clone RP23...    36   1.4
EU965221_1(EU965221|pid:none) Zea mays clone 284591 polyadenylat...    36   1.4
AL606917_4(AL606917|pid:none) Mouse DNA sequence from clone RP23...    36   1.4
(P92964) RecName: Full=Arginine/serine-rich-splicing factor RSP3...    36   1.4
BT077917_1(BT077917|pid:none) Lepeophtheirus salmonis clone lsal...    36   1.4
AP008211_42(AP008211|pid:none) Oryza sativa (japonica cultivar-g...    36   1.4
EF082499_1(EF082499|pid:none) Picea sitchensis clone WS02910_I04...    36   1.4
BC077252_1(BC077252|pid:none) Xenopus laevis proline-rich Vg1 mR...    36   1.4
AY360385_9(AY360385|pid:none) Oryza sativa (japonica cultivar-gr...    36   1.4
FJ502080_1(FJ502080|pid:none) Aristichthys nobilis clone B26 pol...    36   1.4
(P29341) RecName: Full=Polyadenylate-binding protein 1;         ...    36   1.8
EU966110_1(EU966110|pid:none) Zea mays clone 291829 polyadenylat...    36   1.8
DQ120646_1(DQ120646|pid:none) Aotus trivirgatus PABP3 gene, part...    36   1.8
CU928179_343(CU928179|pid:none) Zygosaccharomyces rouxii strain ...    36   1.8
BX927299_3(BX927299|pid:none) Zebrafish DNA sequence from clone ...    36   1.8
DNXLPA(A32323;S12000) polyadenylate-binding protein - African cl...    36   1.8
AK071146_1(AK071146|pid:none) Oryza sativa Japonica Group cDNA c...    36   1.8
BT080325_1(BT080325|pid:none) Caligus clemensi clone ccle-evs-50...    36   1.8
DQ120644_1(DQ120644|pid:none) Hylobates lar PABP3 gene, partial ...    36   1.8
AM295005_1(AM295005|pid:none) Homo sapiens mRNA for boll protein.      36   1.8
AJ717405_1(AJ717405|pid:none) Pan paniscus partial mRNA for BOUL...    36   1.8
FJ774071_1(FJ774071|pid:none) Carassius auratus gibelio Dazl (Da...    36   1.8
AJ719881_1(AJ719881|pid:none) Gallus gallus mRNA for hypothetica...    36   1.8
AK061269_1(AK061269|pid:none) Oryza sativa Japonica Group cDNA c...    36   1.8
AK093453_1(AK093453|pid:none) Homo sapiens cDNA FLJ36134 fis, cl...    36   1.8
AB074454_1(AB074454|pid:none) Macaca fascicularis testis cDNA cl...    36   1.8
(Q9YGW7) RecName: Full=Deleted in azoospermia-like;          Sho...    36   1.8
AM481582_1(AM481582|pid:none) Vitis vinifera contig VV78X200329....    36   1.8
CP001108_1196(CP001108|pid:none) Prosthecochloris aestuarii DSM ...    36   1.8
BC154770_1(BC154770|pid:none) Danio rerio RNA binding motif prot...    36   1.8
(Q9EPH8) RecName: Full=Polyadenylate-binding protein 1;         ...    36   1.8
AK089747_1(AK089747|pid:none) Mus musculus activated spleen cDNA...    36   1.8
DQ120643_1(DQ120643|pid:none) Pongo pygmaeus PABP3 gene, partial...    36   1.8
BC075875_1(BC075875|pid:none) Danio rerio RNA binding motif prot...    36   1.8
(Q8N9W6) RecName: Full=Protein boule-like;  &AC011997_1(AC011997...    36   1.8
BT070029_1(BT070029|pid:none) Zea mays full-length cDNA clone ZM...    35   2.3
X99436_1(X99436|pid:none) A.thaliana mRNA for arginine/serine-ri...    35   2.3
AJ717407_1(AJ717407|pid:none) Callithrix jacchus partial mRNA fo...    35   2.3
BC082645_1(BC082645|pid:none) Xenopus laevis hypothetical LOC494...    35   2.3
AF372519_1(AF372519|pid:none) Trypanosoma cruzi RNA-binding prot...    35   2.3
BT025832_1(BT025832|pid:none) Drosophila melanogaster IP09238 fu...    35   2.3
DQ248969_1(DQ248969|pid:none) Lates calcarifer deleted in azoosp...    35   2.3
T16825(T16825)hypothetical protein T07D1.4 - Caenorhabditis eleg...    35   2.3
AC005167_12(AC005167|pid:none) Arabidopsis thaliana chromosome 2...    35   2.3
AY085618_1(AY085618|pid:none) Arabidopsis thaliana clone 16224 m...    35   2.3
FJ623266_1(FJ623266|pid:none) Bos taurus boule mRNA, complete cds.     35   2.3
BT036501_1(BT036501|pid:none) Zea mays full-length cDNA clone ZM...    35   2.3
BC153534_1(BC153534|pid:none) Danio rerio DAZ associated protein...    35   2.3
CP001097_2035(CP001097|pid:none) Chlorobium limicola DSM 245, co...    35   2.3
EU972185_1(EU972185|pid:none) Zea mays clone 377000 polyadenylat...    35   2.3
AY616024_1(AY616024|pid:none) Zea mays arginine/serine-rich spli...    35   2.3
U14946_1(U14946|pid:none) Caenorhabditis elegans ribonucleoprote...    35   2.3
(Q10572) RecName: Full=Sex determination protein fox-1; AltName:...    35   2.3
AY099852_1(AY099852|pid:none) Arabidopsis thaliana putative spli...    35   2.3
AE014297_4382(AE014297|pid:none) Drosophila melanogaster chromos...    35   2.3
BC084798_1(BC084798|pid:none) Xenopus laevis hypothetical LOC495...    35   2.3
AJ717408_1(AJ717408|pid:none) Saimiri sciureus partial mRNA for ...    35   2.3
BC114331_1(BC114331|pid:none) Danio rerio DAZ associated protein...    35   2.3
EU966594_1(EU966594|pid:none) Zea mays clone 295518 unknown mRNA.      35   3.1
AB164065_1(AB164065|pid:none) Cynops pyrrhogaster Dazl mRNA for ...    35   3.1
BC059662_1(BC059662|pid:none) Danio rerio poly A binding protein...    35   3.1
EU500865_1(EU500865|pid:none) Cucumis sativus clone CS_SBa_173I2...    35   3.1
AP003622_9(AP003622|pid:none) Oryza sativa Japonica Group genomi...    35   3.1
AP008208_215(AP008208|pid:none) Oryza sativa (japonica cultivar-...    35   3.1
EU960340_1(EU960340|pid:none) Zea mays clone 223836 RNA binding ...    35   3.1
CP001108_121(CP001108|pid:none) Prosthecochloris aestuarii DSM 2...    35   3.1
BT064622_1(BT064622|pid:none) Zea mays full-length cDNA clone ZM...    35   3.1
AJ746579_1(AJ746579|pid:none) Microcebus murinus partial mRNA fo...    35   3.1
CP000499_499(CP000499|pid:none) Pichia stipitis CBS 6054 chromos...    35   3.1
AP004150_18(AP004150|pid:none) Oryza sativa Japonica Group genom...    35   3.1
AB092510_1(AB092510|pid:none) Bombyx mori mRNA for TIA-1 homolog...    35   4.0
AK298990_1(AK298990|pid:none) Homo sapiens cDNA FLJ59219 complet...    35   4.0
AL032631_3(AL032631|pid:none) Caenorhabditis elegans YAC Y106G6H...    35   4.0
(Q9H361) RecName: Full=Polyadenylate-binding protein 3;         ...    35   4.0
EF677865_1(EF677865|pid:none) Picea sitchensis clone WS02776_K15...    35   4.0
(P38996) RecName: Full=Nuclear polyadenylated RNA-binding protei...    35   4.0
AL032631_5(AL032631|pid:none) Caenorhabditis elegans YAC Y106G6H...    35   4.0
CP000492_2580(CP000492|pid:none) Chlorobium phaeobacteroides DSM...    35   4.0
(Q5R8F7) RecName: Full=Polyadenylate-binding protein 1;         ...    35   4.0
CP001575_501(CP001575|pid:none) Micromonas sp. RCC299 chromosome...    35   4.0
DQ120640_1(DQ120640|pid:none) Homo sapiens PABP3 gene, partial c...    35   4.0
S52491(S52491) polyadenylate binding protein II - human  &Z48501...    35   4.0
L13037_1(L13037|pid:none) Drosophila melanogaster nucleolytic po...    35   4.0
D37935_1(D37935|pid:none) Yeast DNA for RNA binding protein, com...    35   4.0
AK101615_1(AK101615|pid:none) Oryza sativa Japonica Group cDNA c...    35   4.0
AF231031_1(AF231031|pid:none) Drosophila melanogaster rasputin (...    35   4.0
DQ120645_1(DQ120645|pid:none) Cercopithecus sabaeus PABP3 gene, ...    35   4.0
(P11940) RecName: Full=Polyadenylate-binding protein 1;         ...    35   4.0
CP000254_2375(CP000254|pid:none) Methanospirillum hungatei JF-1,...    35   4.0
AE014297_1765(AE014297|pid:none) Drosophila melanogaster chromos...    35   4.0
AK121372_1(AK121372|pid:none) Oryza sativa Japonica Group cDNA c...    35   4.0
AY070612_1(AY070612|pid:none) Drosophila melanogaster RE71384 fu...    35   4.0
AE014297_3585(AE014297|pid:none) Drosophila melanogaster chromos...    35   4.0
BC099992_1(BC099992|pid:none) Danio rerio poly A binding protein...    35   4.0
AE014297_3588(AE014297|pid:none) Drosophila melanogaster chromos...    35   4.0
BC076931_1(BC076931|pid:none) Xenopus tropicalis polyadenylate-b...    35   4.0
AF132026_1(AF132026|pid:none) Homo sapiens testis-specific poly(...    35   4.0
AJ292768_1(AJ292768|pid:none) Nicotiana plumbaginifolia partial ...    35   4.0
AM486977_3(AM486977|pid:none) Vitis vinifera contig VV78X043978....    34   5.2
EU042108_1(EU042108|pid:none) Epinephelus coioides Hnrpa01 prote...    34   5.2
BC066434_1(BC066434|pid:none) Danio rerio heterogeneous nuclear ...    34   5.2
BT085576_1(BT085576|pid:none) Zea mays full-length cDNA clone ZM...    34   5.2
BC066672_1(BC066672|pid:none) Danio rerio zgc:77366, mRNA (cDNA ...    34   5.2
CR954213_251(CR954213|pid:none) Ostreococcus tauri strain OTTH05...    34   5.2
BT051812_1(BT051812|pid:none) Medicago truncatula clone MTYF5_F6...    34   5.2
AB097082_7(AB097082|pid:none) Candida glabrata SNL1, VID28, BAR1...    34   5.2
AE014297_1770(AE014297|pid:none) Drosophila melanogaster chromos...    34   5.2
U18401_1(U18401|pid:none) Drosophila melanogaster testis-specifi...    34   5.2
AY089457_1(AY089457|pid:none) Drosophila melanogaster AT27014 fu...    34   5.2
AK099630_1(AK099630|pid:none) Oryza sativa Japonica Group cDNA c...    34   5.2
BT035847_1(BT035847|pid:none) Zea mays full-length cDNA clone ZM...    34   6.8
(Q9Y4C8) RecName: Full=Probable RNA-binding protein 19; AltName:...    34   6.8
(Q6CSV3) RecName: Full=Polyadenylate-binding protein, cytoplasmi...    34   6.8
AB207971_1(AB207971|pid:none) Lolium perenne gene for glycine-ri...    34   6.8
EU076902_1(EU076902|pid:none) Bambusa oldhamii putative glycine-...    34   6.8
AJ851483_1(AJ851483|pid:none) Gallus gallus mRNA for hypothetica...    34   6.8
AK317190_1(AK317190|pid:none) Arabidopsis thaliana AT4G26650 mRN...    34   6.8
AC122728_12(AC122728|pid:none) Medicago truncatula clone mth2-22...    34   6.8
AF029351_1(AF029351|pid:none) Nicotiana tabacum putative RNA bin...    34   6.8
AK291444_1(AK291444|pid:none) Homo sapiens cDNA FLJ77989 complet...    34   6.8
AM494962_45(AM494962|pid:none) Leishmania braziliensis chromosom...    34   6.8
BT053136_1(BT053136|pid:none) Medicago truncatula clone MTYFL_FM...    34   6.8
AM478333_2(AM478333|pid:none) Vitis vinifera contig VV78X160178....    34   6.8
AB014582_1(AB014582|pid:none) Homo sapiens mRNA for KIAA0682 pro...    34   6.8
CU928171_601(CU928171|pid:none) Kluyveromyces thermotolerans str...    34   6.8
AJ002414_1(AJ002414|pid:none) Arabidopsis thaliana mRNA for a hn...    33   8.9
AK131715_1(AK131715|pid:none) Mus musculus adult male testis cDN...    33   8.9
DQ782739_1(DQ782739|pid:none) Polytomella parva polyA-binding pr...    33   8.9
CR382131_452(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...    33   8.9
AL136900_1(AL136900|pid:none) Homo sapiens mRNA; cDNA DKFZp434M1...    33   8.9
AL078465_10(AL078465|pid:none) Arabidopsis thaliana DNA chromoso...    33   8.9
BC051134_1(BC051134|pid:none) Mus musculus poly(A) binding prote...    33   8.9
Z66521_7(Z66521|pid:none) Caenorhabditis elegans Cosmid W02B12, ...    33   8.9
AY048973_1(AY048973|pid:none) Solanum tuberosum RNA-binding prot...    33   8.9
AF349964_1(AF349964|pid:none) Daucus carota poly(A)-binding prot...    33   8.9
Z66521_6(Z66521|pid:none) Caenorhabditis elegans Cosmid W02B12, ...    33   8.9
BT074492_1(BT074492|pid:none) Osmerus mordax clone omor-eva-520-...    33   8.9
D41732(D41732;G48110) heterogeneous nuclear RNP protein - fruit ...    33   8.9
FN392319_381(FN392319|pid:none) Pichia pastoris GS115 chromosome...    33   8.9
FN392319_1058(FN392319|pid:none) Pichia pastoris GS115 chromosom...    33   8.9

>AE016817_583(AE016817|pid:none) Ashbya gossypii (= Eremothecium
           gossypii) ATCC 10895 chromosome IV, complete sequence.
          Length = 320

 Score = 43.5 bits (101), Expect = 0.009
 Identities = 16/40 (40%), Positives = 29/40 (72%)
 Frame = +2

Query: 305 VDQAPIKEAFNQFGVVSNVRILTGYGFVEFEKPESVQNAL 424
           V++  + E F+ +G +  V++++G+ FVEFEKPES + A+
Sbjct: 48  VEEHELDEIFSPYGALKEVKLMSGFAFVEFEKPESAEQAI 87

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 562,076,810
Number of extensions: 6682273
Number of successful extensions: 20428
Number of sequences better than 10.0: 197
Number of HSP's gapped: 20363
Number of HSP's successfully gapped: 198
Length of query: 280
Length of database: 1,040,966,779
Length adjustment: 127
Effective length of query: 153
Effective length of database: 634,022,584
Effective search space: 97005455352
Effective search space used: 97005455352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.58  gvh: 0.42  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 32.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U09459-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0