Contig-U09447-1
Contig ID Contig-U09447-1
Contig update 2002. 9.13
Contig sequence
>Contig-U09447-1 (Contig-U09447-1Q) /CSM_Contig/Contig-U09447-1Q.Seq.d
GGTGATTTAATAATTCCATTTGATAAATTAGATTATCATCAAAGTAATTT
ATTGGATTTTTTAACTTGTGGCACTGGTGATTTTTTTAATGATCAATATG
TTAGAGGTATACAATTTATTATTATAATTGCACTTTCAAGAGGTTGGTCA
GGTGTTAGACCAATGGTAATTCAAACATTGGCTAAACATTTAAATAAAGG
TATAATTCCACAAGTACCAATGCATGGATCAGTAGGGGCAAGTGGTGATT
TAGTACCTTTGAGTTATATTGCTAATGTGCTATGTGGAAAAGGTATGGTG
AAGTATAATGAAAAATTAATGAATGCTTCAGATGCCTTAAAAATTACATC
TATTGAACCACTAGTTTTAAAATCAAAAGAAGGTTTGGCATTAGTAAATG
GTACAAGAGTAATGAGTTCAGTTAGTTGTATTTCAATTAATAAATTTGAA
ACTATTTTTAAAGCTGCAATTGGTAGTATCGCATTGGCAGTTGAAGGTTT
ATTAGCTTCAAAAGATCATTACGATATGAGAATTCATAATTTAAAAAATC
ATCCAGGTCAAATTTTAATTGCA----------CAAGCCATTAGTCTTAG
AATGAAATCTATTGAAAATTTTAAATTACCAAATAAAGTCCAAAAACTTT
ATTCTTCAATTATTAAAATTATTCCAATACTTGAAAATGATAGAAGAACT
GATATTGATGTTAGAGAAATTACAAATGCAATACTTCAAGATAAACTTGA
TTTTATTTATTTTTATTTTTAAAATAATAATTAATAGTACATTTTTAAAT
ATAATAAAATATAATTTTAATAGAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA

Gap gap included
Contig length 845
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 3384597
End point 3383779
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U09447
List of clone(s)

est1=SSJ456F,1,574
est2=SSJ456Z,575,847
Translated Amino Acid sequence
GDLIIPFDKLDYHQSNLLDFLTCGTGDFFNDQYVRGIQFIIIIALSRGWSGVRPMVIQTL
AKHLNKGIIPQVPMHGSVGASGDLVPLSYIANVLCGKGMVKYNEKLMNASDALKITSIEP
LVLKSKEGLALVNGTRVMSSVSCISINKFETIFKAAIGSIALAVEGLLASKDHYDMRIHN
LKNHPGQILIA---

---QAISLRMKSIENFKLPNKVQKLYSSIIKIIPILENDRRTDIDVREITNAILQDKLDF
IYFYF*nnn**yifkynki*f**kkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
GDLIIPFDKLDYHQSNLLDFLTCGTGDFFNDQYVRGIQFIIIIALSRGWSGVRPMVIQTL
AKHLNKGIIPQVPMHGSVGASGDLVPLSYIANVLCGKGMVKYNEKLMNASDALKITSIEP
LVLKSKEGLALVNGTRVMSSVSCISINKFETIFKAAIGSIALAVEGLLASKDHYDMRIHN
LKNHPGQILIA---

---QAISLRMKSIENFKLPNKVQKLYSSIIKIIPILENDRRTDIDVREITNAILQDKLDF
IYFYF*nnn**yifkynki*f**kkkkkkkkkk

Frame B:
vi**fhlin*iiikviywif*lvalviflminmlevynlll*lhfqevgqvldqw*fkhw
lni*ikv*fhkyqcmdq*gqvvi*yl*villmcyvekvw*simkn**mlqmp*klhllnh
*f*nqkkvwh**mvqe**vqlvvfqlinlklflklqlvvshwqlkvy*lqkiiti*efii
*kiiqvkf*l---

---kplvle*nllkilnyqiksknfilqllklfqylkmieelilmleklqmqyfkinlil
fififkiiinstflniikynfnrkkkkkkkkkk

Frame C:
*fnnsi**irlssk*figffnlwhw*ff**sic*rytiyyynctfkrlvrc*tngnsnig
*tfk*rynststnawisrgkw*fstfelyc*camwkrygev**kinecfrclknyiy*tt
sfkikrrfgiskwyksnefs*lyfn**i*nyf*scnw*yrigs*rfisfkrslryens*f
kkssrsnfnc---

---sh*s*neiy*kf*itk*spktlffny*nysnt*k**kn*y*c*rnykcntsr*t*fy
lflflk**livhf*i**niiliekkkkkkkkkk

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U09447-1 (Contig-U09447-1Q)
/CSM_Contig/Contig-U09447-1Q.Seq.d
(855 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U09447-1 (Contig-U09447-1Q) /CSM_Contig/Conti... 1384 0.0
Contig-U14713-1 (Contig-U14713-1Q) /CSM_Contig/Conti... 36 0.060
Contig-U13401-1 (Contig-U13401-1Q) /CSM_Contig/Conti... 36 0.060
Contig-U09703-1 (Contig-U09703-1Q) /CSM_Contig/Conti... 36 0.060
Contig-U05840-1 (Contig-U05840-1Q) /CSM_Contig/Conti... 36 0.060
Contig-U05696-1 (Contig-U05696-1Q) /CSM_Contig/Conti... 36 0.060
Contig-U05496-1 (Contig-U05496-1Q) /CSM_Contig/Conti... 36 0.060
Contig-U01880-1 (Contig-U01880-1Q) /CSM_Contig/Conti... 36 0.060
Contig-U14357-1 (Contig-U14357-1Q) /CSM_Contig/Conti... 34 0.24
Contig-U14169-1 (Contig-U14169-1Q) /CSM_Contig/Conti... 34 0.24

>Contig-U09447-1 (Contig-U09447-1Q) /CSM_Contig/Contig-U09447-1Q.Seq.d
Length = 855

Score = 1384 bits (698), Expect = 0.0
Identities = 742/749 (99%)
Strand = Plus / Plus


Query: 1 ggtgatttaataattccatttgataaattagattatcatcaaagtaatttattggatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtgatttaataattccatttgataaattagattatcatcaaagtaatttattggatttt 60


Query: 61 ttaacttgtggcactggtgannnnnnnaatgatcaatatgttagaggtatacaatttatt 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 61 ttaacttgtggcactggtgatttttttaatgatcaatatgttagaggtatacaatttatt 120


Query: 121 attataattgcactttcaagaggttggtcaggtgttagaccaatggtaattcaaacattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attataattgcactttcaagaggttggtcaggtgttagaccaatggtaattcaaacattg 180


Query: 181 gctaaacatttaaataaaggtataattccacaagtaccaatgcatggatcagtaggggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gctaaacatttaaataaaggtataattccacaagtaccaatgcatggatcagtaggggca 240


Query: 241 agtggtgatttagtacctttgagttatattgctaatgtgctatgtggaaaaggtatggtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agtggtgatttagtacctttgagttatattgctaatgtgctatgtggaaaaggtatggtg 300


Query: 301 aagtataatgaaaaattaatgaatgcttcagatgccttaaaaattacatctattgaacca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aagtataatgaaaaattaatgaatgcttcagatgccttaaaaattacatctattgaacca 360


Query: 361 ctagttttaaaatcaaaagaaggtttggcattagtaaatggtacaagagtaatgagttca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctagttttaaaatcaaaagaaggtttggcattagtaaatggtacaagagtaatgagttca 420


Query: 421 gttagttgtatttcaattaataaatttgaaactatttttaaagctgcaattggtagtatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gttagttgtatttcaattaataaatttgaaactatttttaaagctgcaattggtagtatc 480


Query: 481 gcattggcagttgaaggtttattagcttcaaaagatcattacgatatgagaattcataat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gcattggcagttgaaggtttattagcttcaaaagatcattacgatatgagaattcataat 540


Query: 541 ttaaaaaatcatccaggtcaaattttaattgcannnnnnnnnncaagccattagtcttag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttaaaaaatcatccaggtcaaattttaattgcannnnnnnnnncaagccattagtcttag 600


Query: 601 aatgaaatctattgaaaattttaaattaccaaataaagtccaaaaactttattcttcaat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aatgaaatctattgaaaattttaaattaccaaataaagtccaaaaactttattcttcaat 660


Query: 661 tattaaaattattccaatacttgaaaatgatagaagaactgatattgatgttagagaaat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tattaaaattattccaatacttgaaaatgatagaagaactgatattgatgttagagaaat 720


Query: 721 tacaaatgcaatacttcaagataaacttg 749
|||||||||||||||||||||||||||||
Sbjct: 721 tacaaatgcaatacttcaagataaacttg 749


>Contig-U14713-1 (Contig-U14713-1Q) /CSM_Contig/Contig-U14713-1Q.Seq.d
Length = 809

Score = 36.2 bits (18), Expect = 0.060
Identities = 18/18 (100%)
Strand = Plus / Minus


Query: 172 caaacattggctaaacat 189
||||||||||||||||||
Sbjct: 339 caaacattggctaaacat 322


>Contig-U13401-1 (Contig-U13401-1Q) /CSM_Contig/Contig-U13401-1Q.Seq.d
Length = 1003

Score = 36.2 bits (18), Expect = 0.060
Identities = 21/22 (95%)
Strand = Plus / Plus


Query: 531 aattcataatttaaaaaatcat 552
|||| |||||||||||||||||
Sbjct: 107 aatttataatttaaaaaatcat 128


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,859
Number of Sequences: 6905
Number of extensions: 17859
Number of successful extensions: 2140
Number of sequences better than 10.0: 258
length of query: 855
length of database: 5,674,871
effective HSP length: 16
effective length of query: 839
effective length of database: 5,564,391
effective search space: 4668524049
effective search space used: 4668524049
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.16
Homology vs DNA
Query= Contig-U09447-1 (Contig-U09447-1Q) /CSM_Contig/Contig-U09447-1Q.Seq.d
(855 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 963 0.0 2
(AU074074) Dictyostelium discoideum slug cDNA, clone SSJ456. 303 e-119 2
(C91075) Dictyostelium discoideum slug cDNA, clone SSJ456. 329 1e-85 1
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 38 0.007 14
(BX548174) Prochlorococcus marinus MED4 complete genome. 34 0.044 18
(DU881561) 388698 Tomato HindIII BAC Library Solanum lycoper... 38 0.11 2
(AE017308) Mycoplasma mobile 163K complete genome. 36 0.11 15
(AC026347) Homo sapiens 3 BAC RP11-362A9 (Roswell Park Cance... 34 0.11 7
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 34 0.14 20
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 40 0.19 21
(EJ381033) 1092963762056 Global-Ocean-Sampling_GS-28-01-01-1... 34 0.25 3
(AJ242872) Ceratitis capitata complete mitochondrial genome. 30 0.28 6
(CU809724) A BAC library has been constructed from PN40024 g... 34 0.28 3
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 34 0.30 18
(AC173330) Bos taurus clone CH240-192D16, *** SEQUENCING IN ... 34 0.31 2
(AC096918) Homo sapiens chromosome 3 clone RP11-587M6, compl... 48 0.33 3
(CR925678) Ehrlichia ruminantium str. Welgevonden, complete ... 44 0.47 17
(CR767821) Ehrlichia ruminantium strain Welgevonden, complet... 44 0.49 17
(AC137840) Homo sapiens chromosome 3 clone CTB-85O21, comple... 48 0.55 1
(AC023798) Homo sapiens 3 BAC CTC-485N2 (Cal Tech Human BAC ... 48 0.55 1
(CU855904) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.55 1
(AC023791) Homo sapiens chromosome 3 clone CTC-485M20, *** S... 48 0.55 1
(AZ645802) 1M0511M23F Mouse 10kb plasmid UUGC1M library Mus ... 48 0.55 1
(AE015450) Mycoplasma gallisepticum strain R complete genome. 34 0.84 14
(AL844509) Plasmodium falciparum chromosome 13. 34 1.0 14
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 30 1.0 13
(AL445565) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 34 1.1 10
(AQ281374) RPCI11-78L12.TJ RPCI-11 Homo sapiens genomic clon... 40 1.1 2
(CU651673) Zebrafish DNA sequence from clone CH1073-416M20 i... 38 1.1 4
(AQ792309) HS_5255_B2_B07_T7A RPCI-11 Human Male BAC Library... 40 1.1 2
(AC118808) Rattus norvegicus clone CH230-490G19, *** SEQUENC... 42 1.2 2
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 38 1.2 7
(AY171066) Dictyostelium discoideum extrachromosomal palindr... 32 1.2 9
(EV389898) EST_sfon_evi_749080 sfonevi mixed_tissue Salvelin... 36 1.3 2
(EV389897) EST_sfon_evi_748696 sfonevi mixed_tissue Salvelin... 36 1.3 2
(CW864228) she3f2-17.g_049.ab1 Whole-genome shotgun library ... 38 1.3 2
(EW773931) ST020035B10F03 Normalized and subtracted western ... 36 1.5 2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 32 1.6 11
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 38 1.7 14
(EK360744) 1095468948486 Global-Ocean-Sampling_GS-31-01-01-1... 34 1.8 3
(AM454918) Vitis vinifera contig VV78X231745.6, whole genome... 36 2.1 3
(CP000728) Clostridium botulinum F str. Langeland, complete ... 34 2.2 15
(AL806516) Mouse DNA sequence from clone RP23-453N20 on chro... 46 2.2 1
(AC170265) Mus musculus BAC RP23-54H4 (Roswell Park Cancer ... 46 2.2 1
(AC154017) Mus musculus 6 BAC RP24-156H18 (Roswell Park Canc... 46 2.2 1
(AC102999) Rattus norvegicus 7 BAC CH230-33J22 (Children's H... 46 2.2 1
(AM430158) Vitis vinifera contig VV78X192405.10, whole genom... 46 2.2 1
(AC158668) Mus musculus clone RP23-85F17, WORKING DRAFT SEQU... 46 2.2 1
(CU462920) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.2 1
(CU407014) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.2 1
(AQ560017) HS_2083_A1_H05_T7C CIT Approved Human Genomic Spe... 46 2.2 1
(ET202026) Fug(P20-39) Fugitive-pLNHX-SmACT-Luciferase parti... 46 2.2 1
(ER570571) 1093015790651 Global-Ocean-Sampling_GS-36-01-01-2... 46 2.2 1
(ER393927) 1095339015746 Global-Ocean-Sampling_GS-34-01-01-1... 46 2.2 1
(DH648561) Rattus norvegicus DNA, BAC clone: RNB1-190L14, 3'... 46 2.2 1
(AG691952) Macaca fuscata fuscata DNA, clone: MSB2-126B24_F,... 46 2.2 1
(EH221256) JGI_ABWZ1883.rev ABWZ Phakopsora pachyrhizi infec... 46 2.2 1
(EG932796) EST_ssal_evf_18511 ssalevf mixed_tissue Salmo sal... 46 2.2 1
(CO979426) GM89004B2D12.r1 Gm-r1089 Glycine max cDNA clone G... 46 2.2 1
(CF443461) EST679806 normalized cDNA library of onion Allium... 46 2.2 1
(CU469407) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 2.2 6
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 30 2.2 9
(CU459046) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 2.4 5
(AC133974) Rattus norvegicus clone CH230-103B23, *** SEQUENC... 42 2.4 7
(AC197886) Macaca mulatta clone CH250-312G9, WORKING DRAFT S... 42 2.6 6
(CU570801) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 2.6 8
(DQ927305) Tetrahymena pigmentosa strain UM1060 mitochondrio... 34 2.9 5
(AC144358) Pan troglodytes clone CH251-403K11, WORKING DRAFT... 40 3.4 4
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 36 3.6 7
(AC103525) Rattus norvegicus clone CH230-42C5, WORKING DRAFT... 42 3.6 4
(CU468358) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 4.1 2
(BM064060) KS01062F06 KS01 Capsicum annuum cDNA, mRNA sequence. 40 4.1 2
(EU626443) Gossypioides kirkii clone BAC 096G05, complete se... 36 4.2 8
(CU468330) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 4.2 2
(AC225573) Homo sapiens FOSMID clone ABC14-50175400F18 from ... 38 4.2 3
(EW746738) sb_005_09G15_m13reverselong Onychiurus arcticus c... 36 4.4 2
(AC225475) Medicago truncatula clone mth2-189o5, WORKING DRA... 36 4.5 4
(AC220252) Bos taurus clone CH240-367J11, WORKING DRAFT SEQU... 34 4.6 6
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 36 4.7 17
(AX926716) Sequence 6 from Patent WO03084989. 42 4.7 7
(CU855898) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 4.8 6
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 32 4.9 13
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g... 34 4.9 16
(AF274444) Carsonella ruddii ribosomal protein L11 (rpL11), ... 32 5.2 5
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 32 5.2 14
(CR925858) Zebrafish DNA sequence from clone DKEYP-50E3 in l... 44 5.6 3
(CZ178938) MIAA-13F12b.b1 Meloidogyne incognita BAC end sequ... 32 5.6 2
(CP000883) Hemiselmis andersenii chromosome 3, complete sequ... 32 6.1 9
(AC201163) Strongylocentrotus purpuratus clone R3-14H5, WORK... 34 6.2 6
(EJ233332) 1092404060222 Global-Ocean-Sampling_GS-27-01-01-1... 40 6.4 2
(EJ509733) 1095407058566 Global-Ocean-Sampling_GS-28-01-01-1... 40 6.5 2
(AC148304) Medicago truncatula clone mth2-21b19, complete se... 36 6.7 4
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 34 6.7 13
(CT016799) KBrH128I17 genomic clone, KBrH (HindIII) BAC libr... 32 7.0 3
(AL591622) Human DNA sequence from clone RP11-141L16 on chro... 36 7.0 5
(EU286785) Manduca sexta mitochondrion, complete genome. 30 7.3 6
(AC126009) Medicago truncatula clone mth2-15c20, complete se... 36 7.8 6
(AM488457) Vitis vinifera contig VV79X002499.3, whole genome... 38 8.1 2
(EK395376) 1095469519127 Global-Ocean-Sampling_GS-31-01-01-1... 34 8.2 3
(EU677193) Oedogonium cardiacum strain SAG 575-1b chloroplas... 32 8.3 10

>(AC116984) Dictyostelium discoideum chromosome 2 map 2567470-3108875
strain AX4, complete sequence.
Length = 541399

Score = 963 bits (486), Expect(2) = 0.0
Identities = 486/486 (100%)
Strand = Plus / Plus


Query: 88 aatgatcaatatgttagaggtatacaatttattattataattgcactttcaagaggttgg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361612 aatgatcaatatgttagaggtatacaatttattattataattgcactttcaagaggttgg 361671


Query: 148 tcaggtgttagaccaatggtaattcaaacattggctaaacatttaaataaaggtataatt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361672 tcaggtgttagaccaatggtaattcaaacattggctaaacatttaaataaaggtataatt 361731


Query: 208 ccacaagtaccaatgcatggatcagtaggggcaagtggtgatttagtacctttgagttat 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361732 ccacaagtaccaatgcatggatcagtaggggcaagtggtgatttagtacctttgagttat 361791


Query: 268 attgctaatgtgctatgtggaaaaggtatggtgaagtataatgaaaaattaatgaatgct 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361792 attgctaatgtgctatgtggaaaaggtatggtgaagtataatgaaaaattaatgaatgct 361851


Query: 328 tcagatgccttaaaaattacatctattgaaccactagttttaaaatcaaaagaaggtttg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361852 tcagatgccttaaaaattacatctattgaaccactagttttaaaatcaaaagaaggtttg 361911


Query: 388 gcattagtaaatggtacaagagtaatgagttcagttagttgtatttcaattaataaattt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361912 gcattagtaaatggtacaagagtaatgagttcagttagttgtatttcaattaataaattt 361971


Query: 448 gaaactatttttaaagctgcaattggtagtatcgcattggcagttgaaggtttattagct 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361972 gaaactatttttaaagctgcaattggtagtatcgcattggcagttgaaggtttattagct 362031


Query: 508 tcaaaagatcattacgatatgagaattcataatttaaaaaatcatccaggtcaaatttta 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362032 tcaaaagatcattacgatatgagaattcataatttaaaaaatcatccaggtcaaatttta 362091


Query: 568 attgca 573
||||||
Sbjct: 362092 attgca 362097

Score = 159 bits (80), Expect(2) = 0.0
Identities = 80/80 (100%)
Strand = Plus / Plus


Query: 1 ggtgatttaataattccatttgataaattagattatcatcaaagtaatttattggatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361525 ggtgatttaataattccatttgataaattagattatcatcaaagtaatttattggatttt 361584


Query: 61 ttaacttgtggcactggtga 80
||||||||||||||||||||
Sbjct: 361585 ttaacttgtggcactggtga 361604

Score = 321 bits (162), Expect = 2e-83
Identities = 165/166 (99%)
Strand = Plus / Plus


Query: 584 caagccattagtcttagaatgaaatctattgaaaattttaaattaccaaataaagtccaa 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362713 caagccattagtcttagaatgaaatctattgaaaattttaaattaccaaataaagtccaa 362772


Query: 644 aaactttattcttcaattattaaaattattccaatacttgaaaatgatagaagaactgat 703
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 362773 aaactttattcttcaattataaaaattattccaatacttgaaaatgatagaagaactgat 362832


Query: 704 attgatgttagagaaattacaaatgcaatacttcaagataaacttg 749
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362833 attgatgttagagaaattacaaatgcaatacttcaagataaacttg 362878

Score = 38.2 bits (19), Expect(13) = 0.064
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 610 tattgaaaattttaaatta 628
|||||||||||||||||||
Sbjct: 241061 tattgaaaattttaaatta 241079

Score = 34.2 bits (17), Expect(13) = 0.064
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 447 tgaaactatttttaaag 463
|||||||||||||||||
Sbjct: 213088 tgaaactatttttaaag 213104

Score = 32.2 bits (16), Expect(13) = 0.064
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 681 ttgaaaatgatagaag 696
||||||||||||||||
Sbjct: 369351 ttgaaaatgatagaag 369366

Score = 30.2 bits (15), Expect(13) = 0.064
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 659 attattaaaattatt 673
|||||||||||||||
Sbjct: 266439 attattaaaattatt 266453

Score = 28.2 bits (14), Expect(13) = 0.064
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 116 ttattattataatt 129
||||||||||||||
Sbjct: 48485 ttattattataatt 48498

Score = 28.2 bits (14), Expect(13) = 0.064
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 320 tgaatgcttcagat 333
||||||||||||||
Sbjct: 118051 tgaatgcttcagat 118064

Score = 28.2 bits (14), Expect(13) = 0.064
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 430 atttcaattaataa 443
||||||||||||||
Sbjct: 207953 atttcaattaataa 207966

Score = 26.3 bits (13), Expect(13) = 0.064
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 3 tgatttaataatt 15
|||||||||||||
Sbjct: 46361 tgatttaataatt 46373

Score = 26.3 bits (13), Expect(13) = 0.064
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 163 atggtaattcaaa 175
|||||||||||||
Sbjct: 66836 atggtaattcaaa 66848

Score = 26.3 bits (13), Expect(13) = 0.064
Identities = 19/21 (90%)
Strand = Plus / Plus


Query: 184 aaacatttaaataaaggtata 204
||||||||||| ||||||||
Sbjct: 86680 aaacatttaaaagaaggtata 86700

Score = 26.3 bits (13), Expect(13) = 0.064
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 537 taatttaaaaaat 549
|||||||||||||
Sbjct: 235705 taatttaaaaaat 235717

Score = 26.3 bits (13), Expect(13) = 0.064
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 650 tattcttcaatta 662
|||||||||||||
Sbjct: 263493 tattcttcaatta 263505

Score = 26.3 bits (13), Expect(13) = 0.064
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 716 gaaattacaaatg 728
|||||||||||||
Sbjct: 421261 gaaattacaaatg 421273

Score = 36.2 bits (18), Expect(16) = 0.13
Identities = 18/18 (100%)
Strand = Plus / Minus


Query: 621 ttaaattaccaaataaag 638
||||||||||||||||||
Sbjct: 144764 ttaaattaccaaataaag 144747

Score = 30.2 bits (15), Expect(16) = 0.13
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 659 attattaaaattatt 673
|||||||||||||||
Sbjct: 138410 attattaaaattatt 138396

Score = 30.2 bits (15), Expect(16) = 0.13
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 539 atttaaaaaatcatc 553
|||||||||||||||
Sbjct: 225481 atttaaaaaatcatc 225467

Score = 30.2 bits (15), Expect(16) = 0.13
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 322 aatgcttcagatgcc 336
|||||||||||||||
Sbjct: 446035 aatgcttcagatgcc 446021

Score = 30.2 bits (15), Expect(16) = 0.13
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 48 tttattggatttttt 62
|||||||||||||||
Sbjct: 506194 tttattggatttttt 506180

Score = 28.2 bits (14), Expect(16) = 0.13
Identities = 17/18 (94%)
Strand = Plus / Minus


Query: 340 aaaattacatctattgaa 357
|||||||||||| |||||
Sbjct: 419758 aaaattacatcttttgaa 419741

Score = 26.3 bits (13), Expect(16) = 0.13
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 708 atgttagagaaat 720
|||||||||||||
Sbjct: 30858 atgttagagaaat 30846

Score = 26.3 bits (13), Expect(16) = 0.13
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 700 tgatattgatgtt 712
|||||||||||||
Sbjct: 119015 tgatattgatgtt 119003

Score = 26.3 bits (13), Expect(16) = 0.13
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 558 tcaaattttaatt 570
|||||||||||||
Sbjct: 155941 tcaaattttaatt 155929

Score = 26.3 bits (13), Expect(16) = 0.13
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 449 aaactatttttaa 461
|||||||||||||
Sbjct: 308217 aaactatttttaa 308205

Score = 26.3 bits (13), Expect(16) = 0.13
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 435 aattaataaattt 447
|||||||||||||
Sbjct: 322962 aattaataaattt 322950

Score = 26.3 bits (13), Expect(16) = 0.13
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 369 aaaatcaaaagaa 381
|||||||||||||
Sbjct: 348086 aaaatcaaaagaa 348074

Score = 26.3 bits (13), Expect(16) = 0.13
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 311 aaaaattaatgaa 323
|||||||||||||
Sbjct: 451274 aaaaattaatgaa 451262

Score = 26.3 bits (13), Expect(16) = 0.13
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 241 agtggtgatttag 253
|||||||||||||
Sbjct: 452601 agtggtgatttag 452589

Score = 26.3 bits (13), Expect(16) = 0.13
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 117 tattattataatt 129
|||||||||||||
Sbjct: 496317 tattattataatt 496305

Score = 26.3 bits (13), Expect(16) = 0.13
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 20 ttgataaattaga 32
|||||||||||||
Sbjct: 527162 ttgataaattaga 527150

Score = 44.1 bits (22), Expect = 8.5
Identities = 31/34 (91%)
Strand = Plus / Plus


Query: 658 aattattaaaattattccaatacttgaaaatgat 691
||||||||||||| |||||||| || ||||||||
Sbjct: 141947 aattattaaaatttttccaatatttaaaaatgat 141980

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,000,450,640
Number of extensions: 64653471
Number of successful extensions: 5691902
Number of sequences better than 10.0: 159
Length of query: 855
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 831
Effective length of database: 97,308,875,965
Effective search space: 80863675926915
Effective search space used: 80863675926915
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.26
Homology vs Protein
Query= Contig-U09447-1 (Contig-U09447-1Q) /CSM_Contig/Contig-U09447-1Q.Seq.d
(855 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

CP000923_2118(CP000923|pid:none) Thermoanaerobacter sp. X514, co... 144 5e-33
CP000924_1464(CP000924|pid:none) Thermoanaerobacter pseudethanol... 144 5e-33
(Q5QV30) RecName: Full=Histidine ammonia-lyase; Short=H... 142 1e-32
(A6TSX0) RecName: Full=Histidine ammonia-lyase; Short=H... 138 3e-31
CP000812_521(CP000812|pid:none) Thermotoga lettingae TMO, comple... 137 5e-31
CP000155_3959(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 136 1e-30
CP000058_4646(CP000058|pid:none) Pseudomonas syringae pv. phaseo... 134 3e-30
(Q5NZX8) RecName: Full=Histidine ammonia-lyase; Short=H... 134 4e-30
(Q5FRR8) RecName: Full=Histidine ammonia-lyase; Short=H... 134 5e-30
CP000884_148(CP000884|pid:none) Delftia acidovorans SPH-1, compl... 134 5e-30
CR954247_387(CR954247|pid:none) Pseudoalteromonas haloplanktis s... 133 7e-30
(Q87UM1) RecName: Full=Histidine ammonia-lyase; Short=H... 133 7e-30
CS354251_2(CS354251|pid:none) Sequence 113 from Patent WO2006024... 133 7e-30
AM412319_2(AM412319|pid:none) [Polyangium] brachysporum glidobac... 133 9e-30
AM181176_357(AM181176|pid:none) Pseudomonas fluorescens SBW25 co... 132 1e-29
CP000462_356(CP000462|pid:none) Aeromonas hydrophila subsp. hydr... 132 1e-29
(Q7MK58) RecName: Full=Histidine ammonia-lyase; Short=H... 132 1e-29
CT573326_4730(CT573326|pid:none) Pseudomonas entomophila str. L4... 132 2e-29
CP000926_5050(CP000926|pid:none) Pseudomonas putida GB-1, comple... 132 2e-29
CU466930_490(CU466930|pid:none) Candidatus Cloacamonas acidamino... 132 2e-29
CP000478_2355(CP000478|pid:none) Syntrophobacter fumaroxidans MP... 131 2e-29
FP236842_2356(FP236842|pid:none) Erwinia pyrifoliae strain Ep1/9... 131 3e-29
(Q1IRT8) RecName: Full=Histidine ammonia-lyase; Short=H... 131 3e-29
CP000879_234(CP000879|pid:none) Petrotoga mobilis SJ95, complete... 130 4e-29
(P21310) RecName: Full=Histidine ammonia-lyase; Short=H... 130 4e-29
FM178379_2097(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ... 130 4e-29
(Q88CZ7) RecName: Full=Histidine ammonia-lyase; Short=H... 130 4e-29
(Q5L310) RecName: Full=Histidine ammonia-lyase; Short=H... 130 4e-29
CP000716_1730(CP000716|pid:none) Thermosipho melanesiensis BI429... 130 6e-29
CP000020_845(CP000020|pid:none) Vibrio fischeri ES114 chromosome... 130 6e-29
(Q6HFE9) RecName: Full=Histidine ammonia-lyase; Short=H... 130 6e-29
(A4IK90) RecName: Full=Histidine ammonia-lyase; Short=H... 130 6e-29
(B7HKJ1) RecName: Full=Histidine ammonia-lyase; Short=H... 130 6e-29
CP001407_3577(CP001407|pid:none) Bacillus cereus 03BB102, comple... 130 7e-29
(A1TRE4) RecName: Full=Histidine ammonia-lyase; Short=H... 130 7e-29
CP000086_1792(CP000086|pid:none) Burkholderia thailandensis E264... 129 9e-29
CP001176_3609(CP001176|pid:none) Bacillus cereus B4264, complete... 129 9e-29
(B7ISJ2) RecName: Full=Histidine ammonia-lyase; Short=H... 129 9e-29
CP000749_3855(CP000749|pid:none) Marinomonas sp. MWYL1, complete... 129 9e-29
CP000771_123(CP000771|pid:none) Fervidobacterium nodosum Rt17-B1... 129 9e-29
CU468135_2224(CU468135|pid:none) Erwinia tasmaniensis strain ET1... 129 9e-29
A35251(A35251;S39381) histidine ammonia-lyase (EC 4.3.1.3) - Pse... 129 1e-28
(Q6LQ56) RecName: Full=Histidine ammonia-lyase; Short=H... 129 1e-28
CP000076_399(CP000076|pid:none) Pseudomonas fluorescens Pf-5, co... 129 2e-28
CP000680_4041(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 129 2e-28
(Q7N296) RecName: Full=Histidine ammonia-lyase; Short=H... 129 2e-28
(Q733H8) RecName: Full=Histidine ammonia-lyase; Short=H... 128 2e-28
CP001139_842(CP001139|pid:none) Vibrio fischeri MJ11 chromosome ... 128 3e-28
(Q39EP0) RecName: Full=Histidine ammonia-lyase; Short=H... 128 3e-28
CP000852_1513(CP000852|pid:none) Caldivirga maquilingensis IC-16... 128 3e-28
(Q73Q56) RecName: Full=Histidine ammonia-lyase; Short=H... 128 3e-28
(Q637H8) RecName: Full=Histidine ammonia-lyase; Short=H... 127 4e-28
(Q5E0C6) RecName: Full=Histidine ammonia-lyase; Short=H... 127 5e-28
(Q5X5I5) RecName: Full=Histidine ammonia-lyase; Short=H... 127 6e-28
CP000352_231(CP000352|pid:none) Ralstonia metallidurans CH34, co... 127 6e-28
(A5IBM2) RecName: Full=Histidine ammonia-lyase; Short=H... 127 6e-28
(Q5ZVR0) RecName: Full=Histidine ammonia-lyase; Short=H... 127 6e-28
(A3NXA3) RecName: Full=Histidine ammonia-lyase; Short=H... 127 6e-28
(A3NBH0) RecName: Full=Histidine ammonia-lyase; Short=H... 127 6e-28
(A8HA91) RecName: Full=Histidine ammonia-lyase; Short=H... 127 6e-28
CP000010_562(CP000010|pid:none) Burkholderia mallei ATCC 23344 c... 127 6e-28
CP001472_2882(CP001472|pid:none) Acidobacterium capsulatum ATCC ... 127 6e-28
CP000270_2934(CP000270|pid:none) Burkholderia xenovorans LB400 c... 127 6e-28
(B7V3J1) RecName: Full=Histidine ammonia-lyase; Short=H... 127 6e-28
(Q02ER8) RecName: Full=Histidine ammonia-lyase; Short=H... 127 6e-28
(Q5WWW8) RecName: Full=Histidine ammonia-lyase; Short=H... 127 6e-28
CP000124_2757(CP000124|pid:none) Burkholderia pseudomallei 1710b... 127 6e-28
CP000789_1976(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch... 127 6e-28
CP001185_93(CP001185|pid:none) Thermosipho africanus TCF52B, com... 126 8e-28
AP009385_2113(AP009385|pid:none) Burkholderia multivorans ATCC 1... 126 8e-28
(Q87Q77) RecName: Full=Histidine ammonia-lyase; Short=H... 126 1e-27
(Q6AKP3) RecName: Full=Histidine ammonia-lyase; Short=H... 126 1e-27
AE017340_133(AE017340|pid:none) Idiomarina loihiensis L2TR, comp... 125 2e-27
CP000958_2169(CP000958|pid:none) Burkholderia cenocepacia MC0-3 ... 125 2e-27
CP000744_5754(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 125 2e-27
(Q8XW29) RecName: Full=Histidine ammonia-lyase; Short=H... 125 2e-27
CP000091_2161(CP000091|pid:none) Ralstonia eutropha JMP134 chrom... 125 2e-27
AL646052_2644(AL646052|pid:none) Ralstonia solanacearum GMI1000 ... 125 2e-27
(Q0BDK6) RecName: Full=Histidine ammonia-lyase; Short=H... 125 2e-27
(Q8ZQQ9) RecName: Full=Histidine ammonia-lyase; Short=H... 125 2e-27
CP001127_875(CP001127|pid:none) Salmonella enterica subsp. enter... 125 2e-27
(A4JG46) RecName: Full=Histidine ammonia-lyase; Short=H... 125 2e-27
(A0K8U6) RecName: Full=Histidine ammonia-lyase; Short=H... 124 3e-27
CT573326_319(CT573326|pid:none) Pseudomonas entomophila str. L48... 124 3e-27
CR378675_112(CR378675|pid:none) Photobacterium profundum SS9 chr... 124 3e-27
FM212244_1(FM212244|pid:none) Myxococcus sp. Mx-B0 tam gene for ... 124 3e-27
(Q57RG6) RecName: Full=Histidine ammonia-lyase; Short=H... 124 4e-27
AM179409_8(AM179409|pid:none) Chondromyces crocatus chondramide ... 124 4e-27
(B0RUX3) RecName: Full=Histidine ammonia-lyase; Short=H... 124 4e-27
CP000076_464(CP000076|pid:none) Pseudomonas fluorescens Pf-5, co... 124 4e-27
(Q664B8) RecName: Full=Histidine ammonia-lyase; Short=H... 124 5e-27
(A4W8B5) RecName: Full=Histidine ammonia-lyase; Short=H... 124 5e-27
CP000720_4025(CP000720|pid:none) Yersinia pseudotuberculosis IP ... 124 5e-27
(Q5PG61) RecName: Full=Histidine ammonia-lyase; Short=H... 123 7e-27
(B5XZ79) RecName: Full=Histidine ammonia-lyase; Short=H... 123 7e-27
CP000083_875(CP000083|pid:none) Colwellia psychrerythraea 34H, c... 123 7e-27
CP000058_411(CP000058|pid:none) Pseudomonas syringae pv. phaseol... 123 9e-27
CP000358_271(CP000358|pid:none) Deinococcus geothermalis DSM 113... 123 9e-27
CP000943_166(CP000943|pid:none) Methylobacterium sp. 4-46, compl... 122 1e-26
(Q8Z896) RecName: Full=Histidine ammonia-lyase; Short=H... 122 1e-26
(Q0AP92) RecName: Full=Histidine ammonia-lyase; Short=H... 122 1e-26
(A1JSW6) RecName: Full=Histidine ammonia-lyase; Short=H... 122 2e-26
CP000353_1422(CP000353|pid:none) Ralstonia metallidurans CH34 me... 122 2e-26
(Q8RDU4) RecName: Full=Histidine ammonia-lyase 2; Short... 122 2e-26
(B8CGY5) RecName: Full=Histidine ammonia-lyase; Short=H... 122 2e-26
CP001111_2545(CP001111|pid:none) Stenotrophomonas maltophilia R5... 122 2e-26
(B2A3D9) RecName: Full=Histidine ammonia-lyase; Short=H... 122 2e-26
AM743169_2937(AM743169|pid:none) Stenotrophomonas maltophilia K2... 122 2e-26
AP008229_2278(AP008229|pid:none) Xanthomonas oryzae pv. oryzae M... 121 3e-26
(A5EQB7) RecName: Full=Histidine ammonia-lyase; Short=H... 121 3e-26
AE013598_2359(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K... 121 3e-26
CP000447_3915(CP000447|pid:none) Shewanella frigidimarina NCIMB ... 121 3e-26
CP000739_1066(CP000739|pid:none) Sinorhizobium medicae WSM419 pl... 121 3e-26
CP000606_3749(CP000606|pid:none) Shewanella loihica PV-4, comple... 121 3e-26
CP000316_1029(CP000316|pid:none) Polaromonas sp. JS666, complete... 120 4e-26
CP000090_2695(CP000090|pid:none) Ralstonia eutropha JMP134 chrom... 120 4e-26
(A7ZAE4) RecName: Full=Histidine ammonia-lyase; Short=H... 120 4e-26
CP000560_3522(CP000560|pid:none) Bacillus amyloliquefaciens FZB4... 120 4e-26
CP000753_97(CP000753|pid:none) Shewanella baltica OS185, complet... 120 6e-26
(O31197) RecName: Full=Histidine ammonia-lyase; Short=H... 120 6e-26
CP000094_433(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, c... 120 7e-26
AY192157_8(AY192157|pid:none) Pantoea agglomerans andrimid biosy... 120 7e-26
(A9WHT8) RecName: Full=Histidine ammonia-lyase; Short=H... 120 7e-26
CP000444_95(CP000444|pid:none) Shewanella sp. MR-7, complete gen... 119 1e-25
CP000563_4179(CP000563|pid:none) Shewanella baltica OS155, compl... 119 1e-25
(A8AJ15) RecName: Full=Histidine ammonia-lyase; Short=H... 119 1e-25
(Q8EKJ4) RecName: Full=Histidine ammonia-lyase; Short=H... 119 1e-25
AM039952_1678(AM039952|pid:none) Xanthomonas campestris pv. vesi... 119 1e-25
(A6T6L1) RecName: Full=Histidine ammonia-lyase; Short=H... 119 1e-25
CP000681_80(CP000681|pid:none) Shewanella putrefaciens CN-32, co... 119 1e-25
(A9WVU3) RecName: Full=Histidine ammonia-lyase; Short=H... 119 1e-25
(Q8FVB4) RecName: Full=Histidine ammonia-lyase; Short=H... 119 1e-25
(Q7P188) RecName: Full=Histidine ammonia-lyase; Short=H... 119 2e-25
(Q1D6R1) RecName: Full=Histidine ammonia-lyase; Short=H... 119 2e-25
(Q2YIL6) RecName: Full=Histidine ammonia-lyase; Short=H... 119 2e-25
CP000521_494(CP000521|pid:none) Acinetobacter baumannii ATCC 179... 118 2e-25
(B6IWC6) RecName: Full=Histidine ammonia-lyase; Short=H... 118 2e-25
(Q9HLI6) RecName: Full=Probable histidine ammonia-lyase; ... 118 2e-25
(A4YNK7) RecName: Full=Histidine ammonia-lyase; Short=H... 118 3e-25
(A5VVJ6) RecName: Full=Histidine ammonia-lyase; Short=H... 118 3e-25
(Q8U8Z7) RecName: Full=Histidine ammonia-lyase; Short=H... 118 3e-25
CP000447_346(CP000447|pid:none) Shewanella frigidimarina NCIMB 4... 118 3e-25
(Q67JH4) RecName: Full=Histidine ammonia-lyase; Short=H... 117 4e-25
CP000542_3568(CP000542|pid:none) Verminephrobacter eiseniae EF01... 117 4e-25
(B0R544) RecName: Full=Probable histidine ammonia-lyase; ... 117 5e-25
(Q8YD09) RecName: Full=Bifunctional imidazolonepropionase/histid... 117 5e-25
(Q1Q9E4) RecName: Full=Histidine ammonia-lyase; Short=H... 117 5e-25
(Q2RUU3) RecName: Full=Histidine ammonia-lyase; Short=H... 117 5e-25
AE004437_936(AE004437|pid:none) Halobacterium sp. NRC-1, complet... 117 5e-25
(Q9KWE4) RecName: Full=Histidine ammonia-lyase; Short=H... 117 6e-25
CP000850_2021(CP000850|pid:none) Salinispora arenicola CNS-205, ... 117 6e-25
CP001111_3911(CP001111|pid:none) Stenotrophomonas maltophilia R5... 117 6e-25
AM743169_4303(AM743169|pid:none) Stenotrophomonas maltophilia K2... 116 8e-25
BA000031_889(BA000031|pid:none) Vibrio parahaemolyticus RIMD 221... 116 8e-25
(Q15X40) RecName: Full=Histidine ammonia-lyase; Short=H... 115 1e-24
CP000961_4551(CP000961|pid:none) Shewanella woodyi ATCC 51908, c... 115 1e-24
CP000441_384(CP000441|pid:none) Burkholderia ambifaria AMMD chro... 115 1e-24
(Q89GV3) RecName: Full=Histidine ammonia-lyase; Short=H... 115 2e-24
CP000628_3456(CP000628|pid:none) Agrobacterium radiobacter K84 c... 115 2e-24
CP000821_319(CP000821|pid:none) Shewanella sediminis HAW-EB3, co... 115 2e-24
(A9GFW6) RecName: Full=Histidine ammonia-lyase; Short=H... 115 2e-24
CP000137_72(CP000137|pid:none) Rhizobium etli CFN 42 plasmid p42... 114 3e-24
BC080414_1(BC080414|pid:none) Xenopus laevis hypothetical protei... 114 3e-24
CP000606_3510(CP000606|pid:none) Shewanella loihica PV-4, comple... 114 3e-24
AY271660_31(AY271660|pid:none) Actinomadura madurae strain ATCC ... 114 4e-24
AM236085_211(AM236085|pid:none) Rhizobium leguminosarum bv. vici... 114 5e-24
CP000644_833(CP000644|pid:none) Aeromonas salmonicida subsp. sal... 114 5e-24
CP000386_1718(CP000386|pid:none) Rubrobacter xylanophilus DSM 99... 114 5e-24
BC076901_1(BC076901|pid:none) Xenopus tropicalis histidine ammon... 113 7e-24
(Q11E18) RecName: Full=Histidine ammonia-lyase; Short=H... 113 7e-24
AE017261_107(AE017261|pid:none) Picrophilus torridus DSM 9790, c... 113 9e-24
CP000472_286(CP000472|pid:none) Shewanella piezotolerans WP3, co... 113 9e-24
CP000616_487(CP000616|pid:none) Burkholderia vietnamiensis G4 ch... 112 1e-23
CP001037_1885(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 112 1e-23
(Q9RZ06) RecName: Full=Histidine ammonia-lyase; Short=H... 112 1e-23
CP001075_78(CP001075|pid:none) Rhizobium etli CIAT 652 plasmid p... 112 1e-23
CP000117_3967(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 112 1e-23
BC077229_1(BC077229|pid:none) Xenopus laevis histidine ammonia-l... 112 2e-23
CP000634_784(CP000634|pid:none) Agrobacterium vitis S4 chromosom... 112 2e-23
CP001337_1606(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 112 2e-23
CP000563_332(CP000563|pid:none) Shewanella baltica OS155, comple... 111 3e-23
AM295250_2454(AM295250|pid:none) Staphylococcus carnosus subsp. ... 111 3e-23
CP000851_3875(CP000851|pid:none) Shewanella pealeana ATCC 700345... 111 3e-23
CP001340_1008(CP001340|pid:none) Caulobacter crescentus NA1000, ... 111 3e-23
CP000891_340(CP000891|pid:none) Shewanella baltica OS195, comple... 110 5e-23
AM236080_4468(AM236080|pid:none) Rhizobium leguminosarum bv. vic... 110 5e-23
BC115354_1(BC115354|pid:none) Danio rerio hypothetical protein L... 110 5e-23
AB042217_1(AB042217|pid:none) Homo sapiens HAL gene for histidas... 110 5e-23
EU016618_29(EU016618|pid:none) Uncultured marine microorganism H... 110 5e-23
CP001069_975(CP001069|pid:none) Ralstonia pickettii 12J chromoso... 110 5e-23
CP001252_336(CP001252|pid:none) Shewanella baltica OS223, comple... 110 5e-23
AY048670_33(AY048670|pid:none) Streptomyces globisporus enediyne... 110 5e-23
(B0SYU6) RecName: Full=Histidine ammonia-lyase; Short=H... 110 5e-23
CP000910_1298(CP000910|pid:none) Renibacterium salmoninarum ATCC... 110 6e-23
(A3CL24) RecName: Full=Histidine ammonia-lyase; Short=H... 110 6e-23
CP000387_409(CP000387|pid:none) Streptococcus sanguinis SK36, co... 110 6e-23
CP000685_2565(CP000685|pid:none) Flavobacterium johnsoniae UW101... 110 6e-23
(Q6G3U8) RecName: Full=Histidine ammonia-lyase; Short=H... 110 8e-23
AX366860_1(AX366860|pid:none) Sequence 12 from Patent WO0208402. 110 8e-23
BA000037_1074(BA000037|pid:none) Vibrio vulnificus YJ016 DNA, ch... 110 8e-23
CP001114_1685(CP001114|pid:none) Deinococcus deserti VCD115, com... 109 1e-22
(Q162E2) RecName: Full=Histidine ammonia-lyase; Short=H... 109 1e-22
CP000377_3004(CP000377|pid:none) Silicibacter sp. TM1040, comple... 109 1e-22
CP000503_292(CP000503|pid:none) Shewanella sp. W3-18-1, complete... 108 2e-22
(Q978N8) RecName: Full=Probable histidine ammonia-lyase; ... 108 2e-22
(Q1GSH0) RecName: Full=Histidine ammonia-lyase; Short=H... 108 2e-22
AY596297_1597(AY596297|pid:none) Haloarcula marismortui ATCC 430... 108 2e-22
CP000667_1092(CP000667|pid:none) Salinispora tropica CNB-440, co... 108 2e-22
(A7YWP4) RecName: Full=Histidine ammonia-lyase; Short=H... 108 2e-22
(A5FZB9) RecName: Full=Histidine ammonia-lyase; Short=H... 108 2e-22
CP000507_3375(CP000507|pid:none) Shewanella amazonensis SB2B, co... 108 2e-22
AM398681_819(AM398681|pid:none) Flavobacterium psychrophilum JIP... 108 3e-22
AJ278116_1(AJ278116|pid:none) Betula pendula partial pal1 gene f... 107 4e-22
CP000850_971(CP000850|pid:none) Salinispora arenicola CNS-205, c... 107 4e-22
(P10248) RecName: Full=Phenylalanine ammonia-lyase; EC=... 107 4e-22
CP000753_331(CP000753|pid:none) Shewanella baltica OS185, comple... 107 4e-22
AF032903_2(AF032903|pid:none) Sinorhizobium meliloti imidazolone... 107 5e-22
(P58083) RecName: Full=Histidine ammonia-lyase; Short=H... 107 5e-22
BA000030_3331(BA000030|pid:none) Streptomyces avermitilis MA-468... 107 7e-22
(B5XIY2) RecName: Full=Histidine ammonia-lyase; Short=H... 107 7e-22
(Q9EWW1) RecName: Full=Histidine ammonia-lyase; Short=H... 107 7e-22
(Q8K5L5) RecName: Full=Histidine ammonia-lyase; Short=H... 107 7e-22
(Q8NZ46) RecName: Full=Histidine ammonia-lyase; Short=H... 107 7e-22
CP000259_1787(CP000259|pid:none) Streptococcus pyogenes MGAS9429... 107 7e-22
CP000003_1774(CP000003|pid:none) Streptococcus pyogenes MGAS1039... 107 7e-22
AY803282_1(AY803282|pid:none) Selaginella kraussiana phenylalani... 107 7e-22
CP000431_2125(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 106 1e-21
CP001349_994(CP001349|pid:none) Methylobacterium nodulans ORS 20... 106 1e-21
(P35492) RecName: Full=Histidine ammonia-lyase; Short=H... 106 1e-21
(Q6FZP9) RecName: Full=Histidine ammonia-lyase; Short=H... 105 1e-21
AP006618_1235(AP006618|pid:none) Nocardia farcinica IFM 10152 DN... 105 2e-21
(A5INP9) RecName: Full=Histidine ammonia-lyase; Short=H... 105 2e-21
(Q983I0) RecName: Full=Histidine ammonia-lyase; Short=H... 105 2e-21
CP001131_2031(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 105 2e-21
CP000474_379(CP000474|pid:none) Arthrobacter aurescens TC1, comp... 105 2e-21
(A2RGS5) RecName: Full=Histidine ammonia-lyase; Short=H... 105 2e-21
AM398681_2224(AM398681|pid:none) Flavobacterium psychrophilum JI... 105 2e-21
(Q6GKT7) RecName: Full=Histidine ammonia-lyase; Short=H... 104 3e-21
AX370659_1(AX370659|pid:none) Sequence 9 from Patent WO0210407. 104 3e-21
(P11544) RecName: Full=Phenylalanine ammonia-lyase; EC=... 104 3e-21
AY803280_1(AY803280|pid:none) Lycopodium tristachyum phenylalani... 104 3e-21
A29607(A29607) phenylalanine ammonia-lyase (EC 4.3.1.5) - fungus... 104 3e-21
AX370681_1(AX370681|pid:none) Sequence 31 from Patent WO0210407. 104 3e-21
CP000509_4345(CP000509|pid:none) Nocardioides sp. JS614, complet... 104 4e-21
(Q6GD82) RecName: Full=Histidine ammonia-lyase; Short=H... 104 4e-21
(A6QD47) RecName: Full=Histidine ammonia-lyase; Short=H... 104 4e-21
AP009493_2611(AP009493|pid:none) Streptomyces griseus subsp. gri... 104 4e-21
AE016853_5148(AE016853|pid:none) Pseudomonas syringae pv. tomato... 104 4e-21
CP000454_375(CP000454|pid:none) Arthrobacter sp. FB24, complete ... 104 4e-21
(P24221) RecName: Full=Histidine ammonia-lyase; Short=H... 104 4e-21
CP000685_1104(CP000685|pid:none) Flavobacterium johnsoniae UW101... 104 4e-21
AP007164_528(AP007164|pid:none) Aspergillus oryzae RIB40 genomic... 103 6e-21
AY803279_1(AY803279|pid:none) Huperzia lucidula phenylalanine am... 103 7e-21
AP008218_991(AP008218|pid:none) Oryza sativa (japonica cultivar-... 103 7e-21
FB793372_1(FB793372|pid:none) Sequence 12645 from Patent WO20080... 103 7e-21
AJ289609_1(AJ289609|pid:none) Betula pendula partial pal2 gene f... 103 7e-21
AY860428_1(AY860428|pid:none) Rhizophora mangle phenylalanine am... 103 7e-21
AP009380_1638(AP009380|pid:none) Porphyromonas gingivalis ATCC 3... 103 9e-21
AP009325_8(AP009325|pid:none) Musa balbisiana genomic DNA, BAC c... 102 2e-20
(Q2YUR3) RecName: Full=Histidine ammonia-lyase; Short=H... 102 2e-20
DQ468345_1(DQ468345|pid:none) Isatis tinctoria phenylalanine amm... 102 2e-20
AC133008_20(AC133008|pid:none) Oryza sativa (japonica cultivar-g... 102 2e-20
EU071050_1(EU071050|pid:none) Ginkgo biloba phenylalanine ammoni... 102 2e-20
AB015870_1(AB015870|pid:none) Vitis vinifera gVvPAL1 gene for ph... 101 3e-20
EU643477_18(EU643477|pid:none) Adineta vaga clone Av_TEL_K_A ret... 101 3e-20
AC144928_6(AC144928|pid:none) Medicago truncatula clone mth2-8a1... 101 3e-20
DQ013364_1(DQ013364|pid:none) Rhodotorula glutinis phenylalanine... 101 4e-20
(A3PK23) RecName: Full=Histidine ammonia-lyase; Short=H... 101 4e-20
CU207366_1482(CU207366|pid:none) Gramella forsetii KT0803 comple... 100 5e-20
FJ596641_1(FJ596641|pid:none) Pleioblastus maculosoides phenylal... 100 5e-20
FJ593636_1(FJ593636|pid:none) Phyllostachys iridescens phenylala... 100 5e-20
FJ594467_1(FJ594467|pid:none) Phyllostachys edulis phenylalanine... 100 5e-20
FB793360_1(FB793360|pid:none) Sequence 12633 from Patent WO20080... 100 5e-20
AY803285_1(AY803285|pid:none) Botrychium virginianum phenylalani... 100 5e-20
(Q42609) RecName: Full=Phenylalanine ammonia-lyase; EC=... 100 6e-20
AP009152_2297(AP009152|pid:none) Kocuria rhizophila DC2201 DNA, ... 100 6e-20
FJ715635_1(FJ715635|pid:none) Bambusa oldhamii phenylalanine amm... 100 6e-20
EF192469_1(EF192469|pid:none) Vitis vinifera phenylalanin ammoni... 100 6e-20
FB793354_1(FB793354|pid:none) Sequence 12627 from Patent WO20080... 100 6e-20
AY803288_1(AY803288|pid:none) Pteridium aquilinum phenylalanine ... 100 6e-20
CT573326_2406(CT573326|pid:none) Pseudomonas entomophila str. L4... 100 8e-20
AM265583_1(AM265583|pid:none) Picea abies partial mRNA for pheny... 100 8e-20
EF462460_1(EF462460|pid:none) Salvia miltiorrhiza phenylalanine ... 100 8e-20
AF383151_1(AF383151|pid:none) Manihot esculenta phenylalanine am... 100 8e-20
AM460221_1(AM460221|pid:none) Vitis vinifera contig VV78X085000.... 100 1e-19
CP000140_3551(CP000140|pid:none) Parabacteroides distasonis ATCC... 100 1e-19
AB300202_1(AB300202|pid:none) Ephedra sinica Espal4 mRNA for phe... 100 1e-19
AB283036_1(AB283036|pid:none) Lotus japonicus LjPAL6 mRNA for ph... 100 1e-19
(O23865) RecName: Full=Phenylalanine ammonia-lyase 1; E... 100 1e-19
CP000159_702(CP000159|pid:none) Salinibacter ruber DSM 13855, co... 99 1e-19
(Q5LRD8) RecName: Full=Histidine ammonia-lyase; Short=H... 99 1e-19
CP000383_2095(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 99 1e-19
AP008208_1905(AP008208|pid:none) Oryza sativa (japonica cultivar... 99 1e-19
AM420293_6222(AM420293|pid:none) Saccharopolyspora erythraea NRR... 99 1e-19
(P45734) RecName: Full=Phenylalanine ammonia-lyase; EC=... 99 1e-19
AB300201_1(AB300201|pid:none) Ephedra sinica Espal3 mRNA for phe... 99 2e-19
AF353967_1(AF353967|pid:none) Pinus sylvestris isolate Bro1 phen... 99 2e-19
AK303544_1(AK303544|pid:none) Homo sapiens cDNA FLJ61019 complet... 99 2e-19
AB300199_1(AB300199|pid:none) Ephedra sinica Espal1 mRNA for phe... 99 2e-19
AY321088_1(AY321088|pid:none) Pinus pinaster phenylalanine ammon... 99 2e-19
(O23924) RecName: Full=Phenylalanine ammonia-lyase; EC=... 99 2e-19
(P19142) RecName: Full=Phenylalanine ammonia-lyase class 2; ... 99 2e-19
AY803289_1(AY803289|pid:none) Pellia epiphylla phenylalanine amm... 99 2e-19
(P35510) RecName: Full=Phenylalanine ammonia-lyase 1; E... 99 2e-19
L33677_1(L33677|pid:none) Arabidopsis thaliana (strain Landsberg... 99 2e-19
CP000076_398(CP000076|pid:none) Pseudomonas fluorescens Pf-5, co... 99 2e-19
AM464698_1(AM464698|pid:none) Vitis vinifera contig VV78X153564.... 99 2e-19
FB793352_1(FB793352|pid:none) Sequence 12625 from Patent WO20080... 99 2e-19
AY641535_1(AY641535|pid:none) Pinus pinaster phenylalanine ammon... 99 2e-19
DQ073808_1(DQ073808|pid:none) Trifolium pratense phenylalanine a... 99 2e-19
AY450643_1(AY450643|pid:none) Bambusa oldhamii phenylalanine amm... 99 2e-19
FB793306_1(FB793306|pid:none) Sequence 12579 from Patent WO20080... 98 3e-19
FB793532_1(FB793532|pid:none) Sequence 12805 from Patent WO20080... 98 3e-19
FB793538_1(FB793538|pid:none) Sequence 12811 from Patent WO20080... 98 3e-19
FB793296_1(FB793296|pid:none) Sequence 12569 from Patent WO20080... 98 3e-19
AJ810175_1(AJ810175|pid:none) Beta vulgaris pal gene for phenyla... 98 3e-19
EU970905_1(EU970905|pid:none) Zea mays clone 353699 phenylalanin... 98 3e-19
AY541031_1(AY541031|pid:none) Allium cepa phenylalanine lyase mR... 98 3e-19
FB793476_1(FB793476|pid:none) Sequence 12749 from Patent WO20080... 98 3e-19
FB793292_1(FB793292|pid:none) Sequence 12565 from Patent WO20080... 98 3e-19
EF501766_1(EF501766|pid:none) Scutellaria baicalensis phenylalan... 98 3e-19
AY803286_1(AY803286|pid:none) Ophioglossum reticulatum phenylala... 98 3e-19
FJ596640_1(FJ596640|pid:none) Phyllostachys angusta phenylalanin... 98 3e-19
DQ073809_1(DQ073809|pid:none) Trifolium pratense phenylalanine a... 98 3e-19
AJ276132_1(AJ276132|pid:none) Beta vulgaris partial mRNA for phe... 98 3e-19
CP000943_1558(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 98 3e-19
FJ197127_1(FJ197127|pid:none) Garcinia mangostana phenylalanine ... 98 4e-19
BT062346_1(BT062346|pid:none) Zea mays full-length cDNA clone ZM... 98 4e-19
EU603319_1(EU603319|pid:none) Populus trichocarpa isolate PAL1 p... 98 4e-19
AP006841_4137(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,... 98 4e-19
EF549578_1(EF549578|pid:none) Phyllostachys edulis phenylalanine... 98 4e-19
EU402423_1(EU402423|pid:none) Brassica rapa subsp. campestris ph... 98 4e-19
AF165998_1(AF165998|pid:none) Vigna unguiculata phenylalanine am... 97 5e-19
AF353981_1(AF353981|pid:none) Pinus sylvestris isolate Kir30 phe... 97 5e-19
AY453842_1(AY453842|pid:none) Stellaria longipes phenylalanine a... 97 7e-19
AF480619_1(AF480619|pid:none) Populus tremuloides phenylalanine ... 97 7e-19
CP000875_1874(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 97 7e-19
AY803284_1(AY803284|pid:none) Psilotum nudum phenylalanine ammon... 97 7e-19
D30656_1(D30656|pid:none) Populus sieboldii x Populus grandident... 97 7e-19
DQ073811_1(DQ073811|pid:none) Trifolium pratense phenylalanine a... 97 7e-19
DQ445051_1(DQ445051|pid:none) Arnebia euchroma phenylalanine amm... 97 7e-19
AC150977_6(AC150977|pid:none) Medicago truncatula clone mth2-32m... 97 7e-19
AK067801_1(AK067801|pid:none) Oryza sativa Japonica Group cDNA c... 97 7e-19
AF401636_1(AF401636|pid:none) Rehmannia glutinosa phenylalanine ... 97 7e-19
AM484129_3(AM484129|pid:none) Vitis vinifera contig VV78X269098.... 97 9e-19
(P25872) RecName: Full=Phenylalanine ammonia-lyase; EC=... 97 9e-19
AF325496_1(AF325496|pid:none) Ipomoea nil phenylalanine ammonia-... 97 9e-19
AB283040_1(AB283040|pid:none) Lotus japonicus LjPAL10 mRNA for p... 97 9e-19
BT041432_1(BT041432|pid:none) Zea mays full-length cDNA clone ZM... 97 9e-19
EU404160_1(EU404160|pid:none) Stylosanthes guianensis phenylalan... 97 9e-19
AF460204_1(AF460204|pid:none) Coffea canephora phenylalanine amm... 97 9e-19
CP000159_697(CP000159|pid:none) Salinibacter ruber DSM 13855, co... 97 9e-19
(P45732) RecName: Full=Phenylalanine ammonia-lyase; EC=... 97 9e-19
FB793544_1(FB793544|pid:none) Sequence 12817 from Patent WO20080... 97 9e-19
AB283031_1(AB283031|pid:none) Lotus japonicus LjPAL1 mRNA for ph... 96 1e-18
EU402424_1(EU402424|pid:none) Brassica rapa subsp. campestris ph... 96 1e-18
AB042520_1(AB042520|pid:none) Catharanthus roseus mRNA for pheny... 96 1e-18
AB283032_1(AB283032|pid:none) Lotus japonicus LjPAL2 mRNA for ph... 96 1e-18
AB283035_1(AB283035|pid:none) Lotus japonicus LjPAL5 mRNA for ph... 96 1e-18
(P19143) RecName: Full=Phenylalanine ammonia-lyase class 3; ... 96 1e-18
AY738639_1(AY738639|pid:none) Olea europaea phenylalanine ammoni... 96 1e-18
(P27990) RecName: Full=Phenylalanine ammonia-lyase; EC=... 96 1e-18
EF567076_1(EF567076|pid:none) Astragalus membranaceus phenylalan... 96 1e-18
AB041361_1(AB041361|pid:none) Dianthus caryophyllus Dcpal1 mRNA ... 96 2e-18
(Q42667) RecName: Full=Phenylalanine ammonia-lyase; EC=... 96 2e-18
T05970(T05970) phenylalanine ammonia-lyase (EC 4.3.1.5) - barley... 96 2e-18
AJ278454_1(AJ278454|pid:none) Juglans nigra mRNA for partial phe... 96 2e-18
S28185(S28185)phenylalanine ammonia-lyase (EC 4.3.1.5) - rice 96 2e-18
M83314_1(M83314|pid:none) Lycopersicon esculentum phenylalanine ... 96 2e-18
(P35511) RecName: Full=Phenylalanine ammonia-lyase; Sho... 96 2e-18
DQ978787_1(DQ978787|pid:none) Rhizophora mangle putative phenyla... 96 2e-18
AY860427_1(AY860427|pid:none) Rhizophora mangle phenylalanine am... 96 2e-18
(Q40910) RecName: Full=Phenylalanine ammonia-lyase G4; ... 96 2e-18
AY986506_1(AY986506|pid:none) Astragalus membranaceus var. mongh... 96 2e-18
CP001618_1827(CP001618|pid:none) Beutenbergia cavernae DSM 12333... 96 2e-18
EU972101_1(EU972101|pid:none) Zea mays clone 375012 phenylalanin... 96 2e-18
AB283034_1(AB283034|pid:none) Lotus japonicus LjPAL4 mRNA for ph... 96 2e-18
EU856392_1(EU856392|pid:none) Musa acuminata cultivar Calcutta 4... 96 2e-18
DQ341308_1(DQ341308|pid:none) Brassica napus phenylalanine ammon... 96 2e-18
(Q42858) RecName: Full=Phenylalanine ammonia-lyase; EC=... 96 2e-18
EF678408_1(EF678408|pid:none) Picea sitchensis clone WS0291_C05 ... 96 2e-18
BT054938_1(BT054938|pid:none) Zea mays full-length cDNA clone ZM... 96 2e-18
FB793494_1(FB793494|pid:none) Sequence 12767 from Patent WO20080... 96 2e-18
AM418586_1(AM418586|pid:none) Cynara scolymus pal3a gene for phe... 96 2e-18
AB283038_1(AB283038|pid:none) Lotus japonicus LjPAL8 mRNA for ph... 96 2e-18
AF460203_1(AF460203|pid:none) Coffea canephora phenylalanine amm... 96 2e-18
AY803283_1(AY803283|pid:none) Equisetum arvense phenylalanine am... 95 3e-18
EF189195_1(EF189195|pid:none) Saccharum officinarum phenylalanin... 95 3e-18
AM418588_1(AM418588|pid:none) Cynara scolymus partial pal2 gene ... 95 3e-18
EU955384_1(EU955384|pid:none) Zea mays clone 1530368 phenylalani... 95 3e-18
CP000826_795(CP000826|pid:none) Serratia proteamaculans 568, com... 95 3e-18
AF237955_1(AF237955|pid:none) Rubus idaeus phenylalanine ammonia... 95 3e-18
FJ593634_1(FJ593634|pid:none) Phyllostachys dulcis phenylalanine... 95 3e-18
(P45733) RecName: Full=Phenylalanine ammonia-lyase; EC=... 95 3e-18
AB289452_1(AB289452|pid:none) Nicotiana tabacum NtPAL mRNA for p... 95 3e-18
EU957015_1(EU957015|pid:none) Zea mays clone 1580529 phenylalani... 94 4e-18
(P26600) RecName: Full=Phenylalanine ammonia-lyase; Sho... 94 4e-18
AF480620_1(AF480620|pid:none) Populus tremuloides phenylalanine ... 94 4e-18
FJ944018_1(FJ944018|pid:none) Litchi chinensis cultivar Nuo Mi C... 94 6e-18
AY055752_1(AY055752|pid:none) Brassica rapa subsp. pekinensis ph... 94 6e-18
AY795079_1(AY795079|pid:none) Brassica napus phenylalanine ammon... 94 6e-18
(P35513) RecName: Full=Phenylalanine ammonia-lyase; EC=... 94 6e-18
(P31426) RecName: Full=Phenylalanine ammonia-lyase 2; E... 94 6e-18
CP000094_365(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, c... 94 7e-18
(Q43210) RecName: Full=Phenylalanine ammonia-lyase; EC=... 94 7e-18
AF304367_1(AF304367|pid:none) Rubus idaeus phenylalanine ammonia... 94 7e-18
FB793304_1(FB793304|pid:none) Sequence 12577 from Patent WO20080... 94 7e-18
FJ864336_1(FJ864336|pid:none) Populus simonii x Populus nigra ph... 94 7e-18
FB793298_1(FB793298|pid:none) Sequence 12571 from Patent WO20080... 94 7e-18
S48726(S48726;S56035)phenylalanine ammonia-lyase (EC 4.3.1.5) 3 ... 93 1e-17
AB089813_1(AB089813|pid:none) Daucus carota gDcPAL3 gene for phe... 93 1e-17
(P45729) RecName: Full=Phenylalanine ammonia-lyase 3; E... 93 1e-17
AF304366_1(AF304366|pid:none) Rubus idaeus phenylalanine ammonia... 93 1e-17
AJ238753_1(AJ238753|pid:none) Citrus clementina X Citrus reticul... 93 1e-17
AM418560_1(AM418560|pid:none) Cynara scolymus partial pal1 gene ... 93 1e-17
(O04058) RecName: Full=Phenylalanine ammonia-lyase; EC=... 93 1e-17
DQ078280_1(DQ078280|pid:none) Ulmus pumila phenylalanine ammonia... 93 1e-17
AY803287_1(AY803287|pid:none) Blechnum spicant phenylalanine amm... 93 1e-17
DQ883805_1(DQ883805|pid:none) Jatropha curcas phenylalanine ammo... 93 1e-17
(Q20502) RecName: Full=Probable histidine ammonia-lyase; ... 92 2e-17
CP000139_328(CP000139|pid:none) Bacteroides vulgatus ATCC 8482, ... 92 2e-17
EU603321_1(EU603321|pid:none) Populus trichocarpa isolate PAL2 p... 92 2e-17
EU862233_1(EU862233|pid:none) Musa acuminata AAA Group cultivar ... 92 2e-17
AF411134_1(AF411134|pid:none) Lactuca sativa phenylalanine ammon... 92 2e-17
FB793542_1(FB793542|pid:none) Sequence 12815 from Patent WO20080... 92 2e-17
EF070337_1(EF070337|pid:none) Rudbeckia hirta phenylalanine ammo... 92 2e-17
FJ938356_1(FJ938356|pid:none) Morus alba isolate pal2 PAL (pal) ... 92 2e-17
FB793336_1(FB793336|pid:none) Sequence 12609 from Patent WO20080... 92 2e-17
S52632(S52632) phenylalanine ammonia-lyase (EC 4.3.1.5) - muskme... 92 2e-17
AY724735_1(AY724735|pid:none) Taxus chinensis phenylalanine amin... 92 3e-17
AY724736_1(AY724736|pid:none) Taxus chinensis phenylalanine amin... 92 3e-17
CP000578_259(CP000578|pid:none) Rhodobacter sphaeroides ATCC 170... 92 3e-17
AF383152_1(AF383152|pid:none) Manihot esculenta phenylalanine am... 92 3e-17
FJ594466_1(FJ594466|pid:none) Euphorbia pulcherrima cultivar Ear... 92 3e-17
EU603320_1(EU603320|pid:none) Populus trichocarpa isolate PAL5 p... 91 5e-17
DQ124225_1(DQ124225|pid:none) Fagus sylvatica putative phenylala... 91 5e-17
AY694188_1(AY694188|pid:none) Camellia sinensis phenylalanine am... 91 5e-17
AY372451_1(AY372451|pid:none) Populus balsamifera subsp. trichoc... 91 5e-17
EU603322_1(EU603322|pid:none) Populus trichocarpa isolate PAL4 p... 91 5e-17
EU856393_1(EU856393|pid:none) Musa acuminata AAA Group cultivar ... 91 5e-17
FB793534_1(FB793534|pid:none) Sequence 12807 from Patent WO20080... 91 6e-17
CP000269_515(CP000269|pid:none) Janthinobacterium sp. Marseille,... 91 6e-17
(P45724) RecName: Full=Phenylalanine ammonia-lyase 2; E... 91 6e-17
AY724738_1(AY724738|pid:none) Taxus canadensis phenylalanine ami... 91 6e-17
AY092957_1(AY092957|pid:none) Arabidopsis thaliana phenylalanine... 91 6e-17
AE004091_5089(AE004091|pid:none) Pseudomonas aeruginosa PAO1, co... 91 6e-17
AY724737_1(AY724737|pid:none) Taxus x media phenylalanine aminom... 91 6e-17
(P45727) RecName: Full=Phenylalanine ammonia-lyase; EC=... 90 8e-17
AY837828_1(AY837828|pid:none) Linum usitatissimum putative pheny... 90 8e-17
(P45725) RecName: Full=Phenylalanine ammonia-lyase 3; E... 90 1e-16
AL391716_15(AL391716|pid:none) Arabidopsis thaliana DNA chromoso... 90 1e-16
EU340828_1(EU340828|pid:none) Plagiochasma appendiculatum phenyl... 89 1e-16
AK317680_1(AK317680|pid:none) Arabidopsis thaliana AT3G53260 mRN... 89 1e-16
CP000144_584(CP000144|pid:none) Rhodobacter sphaeroides 2.4.1 ch... 89 2e-16
CU633457_126(CU633457|pid:none) Podospora anserina genomic DNA c... 88 3e-16
(Q43052) RecName: Full=Phenylalanine ammonia-lyase G2B; ... 88 4e-16
AF218453_1(AF218453|pid:none) Coffea arabica clone 369.1.6r phen... 88 4e-16
(Q01861) RecName: Full=Phenylalanine ammonia-lyase 1; E... 88 4e-16
AE007870_791(AE007870|pid:none) Agrobacterium tumefaciens str. C... 88 4e-16
FB793300_1(FB793300|pid:none) Sequence 12573 from Patent WO20080... 88 4e-16
(Q04593) RecName: Full=Phenylalanine ammonia-lyase 2; E... 87 5e-16
CP000390_2519(CP000390|pid:none) Mesorhizobium sp. BNC1, complet... 87 7e-16
L33678_1(L33678|pid:none) Arabidopsis thaliana (strain Columbia)... 86 2e-15
(P45731) RecName: Full=Phenylalanine ammonia-lyase G1; ... 86 2e-15
AF306551_1(AF306551|pid:none) Ustilago maydis phenylalanine ammo... 86 2e-15
AY973992_1(AY973992|pid:none) Bambusa ventricosa putative phenyl... 86 2e-15
AB269917_1(AB269917|pid:none) Solanum melongena pal mRNA for phe... 85 3e-15
CP000544_1789(CP000544|pid:none) Halorhodospira halophila SL1, c... 85 3e-15
CP001389_2688(CP001389|pid:none) Rhizobium sp. NGR234, complete ... 85 3e-15
AM270302_30(AM270302|pid:none) Aspergillus niger contig An13c008... 85 3e-15
AY005474_1(AY005474|pid:none) Triticum aestivum inducible phenyl... 84 6e-15
(Q96V77) RecName: Full=Phenylalanine ammonia-lyase; EC=... 84 8e-15
AL591688_2712(AL591688|pid:none) Sinorhizobium meliloti 1021 com... 82 2e-14
CP000628_3460(CP000628|pid:none) Agrobacterium radiobacter K84 c... 82 2e-14
BA000012_117(BA000012|pid:none) Mesorhizobium loti MAFF303099 DN... 82 2e-14
AF229430_1(AF229430|pid:none) Brassica rapa cultivar R500 phenyl... 82 3e-14
AM236085_221(AM236085|pid:none) Rhizobium leguminosarum bv. vici... 82 3e-14
AF229429_1(AF229429|pid:none) Brassica oleracea cultivar Rapid C... 82 3e-14
AP007151_456(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 81 4e-14
AM747722_115(AM747722|pid:none) Burkholderia cenocepacia J2315 c... 80 9e-14
CP000822_2853(CP000822|pid:none) Citrobacter koseri ATCC BAA-895... 80 9e-14
AE006469_168(AE006469|pid:none) Sinorhizobium meliloti 1021 plas... 80 1e-13
AM418587_1(AM418587|pid:none) Cynara scolymus partial pal3b gene... 79 1e-13
CP000738_2556(CP000738|pid:none) Sinorhizobium medicae WSM419, c... 78 3e-13
CP000629_1089(CP000629|pid:none) Agrobacterium radiobacter K84 c... 78 4e-13
EF110924_1(EF110924|pid:none) Astragalus membranaceus var. mongh... 78 4e-13
FB793308_1(FB793308|pid:none) Sequence 12581 from Patent WO20080... 77 6e-13
CP000390_2945(CP000390|pid:none) Mesorhizobium sp. BNC1, complet... 76 2e-12
(P14166) RecName: Full=Phenylalanine ammonia-lyase; EC=... 75 2e-12
CP000633_387(CP000633|pid:none) Agrobacterium vitis S4 chromosom... 75 3e-12
AM236086_744(AM236086|pid:none) Rhizobium leguminosarum bv. vici... 75 3e-12
CP000380_262(CP000380|pid:none) Burkholderia cenocepacia AU 1054... 75 4e-12
CP001027_103(CP001027|pid:none) Burkholderia ambifaria MC40-6 ch... 75 4e-12
AM270075_111(AM270075|pid:none) Aspergillus niger contig An04c01... 74 5e-12
CP001503_1722(CP001503|pid:none) Burkholderia glumae BGR1 chromo... 74 8e-12
AY747679_1(AY747679|pid:none) Styphnolobium japonicum phenylalan... 71 4e-11
CP000442_262(CP000442|pid:none) Burkholderia ambifaria AMMD chro... 71 4e-11
CP001053_828(CP001053|pid:none) Burkholderia phytofirmans PsJN c... 71 5e-11
CP000023_1213(CP000023|pid:none) Streptococcus thermophilus LMG ... 70 7e-11
CP000024_1235(CP000024|pid:none) Streptococcus thermophilus CNRZ... 70 7e-11

>CP000923_2118(CP000923|pid:none) Thermoanaerobacter sp. X514,
complete genome.
Length = 508

Score = 144 bits (362), Expect = 5e-33
Identities = 73/190 (38%), Positives = 119/190 (62%)
Frame = +1

Query: 4 DLIIPFDKLDYHQSNLLDFLTCGTGDFFNDQYVRGIQFIIIIALSRGWSGVRPMVIQTLA 183
D++I + + Q NL+ +CG G ++ VR I + AL++G+SGVR ++TL
Sbjct: 65 DVVISKEDTEILQKNLIMSHSCGVGKPLPEEVVRAIMLLRANALAKGFSGVRLETLKTLI 124

Query: 184 KHLNKGIIPQVPMHGSVGASGDLVPLSYIANVLCGKGMVKYNEKLMNASDALKITSIEPL 363
+ LNKG+ P +P GS+GASGDL PL+++ V+ GKG Y K M+ A+K I P+
Sbjct: 125 EMLNKGVTPVIPEKGSLGASGDLAPLAHMVLVMIGKGEALYKGKRMSGEKAMKEAGIAPV 184

Query: 364 VLKSKEGLALVNGTRVMSSVSCISINKFETIFKAAIGSIALAVEGLLASKDHYDMRIHNL 543
VL SKEGLAL+NGT+VM+++ C+++ + + K+A ++ +E L D +D R+ +
Sbjct: 185 VLSSKEGLALINGTQVMTAIGCLNVYDSKRLIKSADAISSITLEALRGIIDAFDDRVQMV 244

Query: 544 KNHPGQILIA 573
+ H GQ+++A
Sbjct: 245 RPHRGQMVVA 254

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,062,848,006
Number of extensions: 18502223
Number of successful extensions: 40932
Number of sequences better than 10.0: 536
Number of HSP's gapped: 40478
Number of HSP's successfully gapped: 537
Length of query: 285
Length of database: 1,040,966,779
Length adjustment: 127
Effective length of query: 158
Effective length of database: 634,022,584
Effective search space: 100175568272
Effective search space used: 100175568272
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.75 gvh: 0.54 alm: 0.33 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar

>> prediction for Contig-U09447-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0