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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01574-1
Contig ID Contig-U01574-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01574-1 (Contig-U01574-1Q) /CSM_Contig/Contig-U01574-1Q.Seq.d
AAAAAAAAAAAAGGTTGAATTTAATTAATTAATTTATTTATTTATTTATT
TCAATTACAACAACAATAATAAAAATAAACCACATTATATATAAAATAAA
AAGATAAAATAAAATGGCATCAACAGAGATACCTATATTTACAACACCTC
AAGAAGAGATTCAATATTGGAAAAAGAGAGTAGAAGATAAACAACAAGAG
ATGGACGATTTAGAGACGACATTTACTGAATTTCAAGATTTTTCAAAACA
ATTAGAAGAAGAAATGGAAGATGAATTAAGAATCTGTGAAAAAAAATGTG
CAGATTTAGCTTCACAATATGCGCGATTAAAAAATGAT
Gap no gap
Contig length 338
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 1268829
End point 1268491
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U01574
List of clone(s) 

est1=SSB772F,1,339
Translated Amino Acid sequence 
kkkrlnlin*fiylfisitttiikinhiiykikr*NKMASTEIPIFTTPQEEIQYWKKRV
EDKQQEMDDLETTFTEFQDFSKQLEEEMEDELRICEKKCADLASQYARLKND
Translated Amino Acid sequence (All Frames) 
Frame A:
kkkkg*i*linlfiylfqlqqq**k*ttlyik*kdkikwhqqrylylqhlkkrfnigkre
*kinnkrwti*rrhllnfkifqnn*kkkwkmn*esvkknvqi*lhnmrd*km


Frame B:
kkkkvefn*liylfiyfnynnnnknkphyi*nkkik*nginrdtyiyntsrrdsilekes
rr*ttrdgrfrddiy*isrffktirrrngr*iknl*kkmcrfsfticaikk*


Frame C:
kkkrlnlin*fiylfisitttiikinhiiykikr*NKMASTEIPIFTTPQEEIQYWKKRV
EDKQQEMDDLETTFTEFQDFSKQLEEEMEDELRICEKKCADLASQYARLKND
own update 2004. 6. 7
Homology vs CSM-cDNA 
Query= Contig-U01574-1 (Contig-U01574-1Q)
/CSM_Contig/Contig-U01574-1Q.Seq.d
         (338 letters)

Database: CSM
           8361 sequences; 7,895,291 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01574-1 (Contig-U01574-1Q) /CSM_Contig/Conti...   396  e-111
Contig-U12746-1 (Contig-U12746-1Q) /CSM_Contig/Conti...    36  0.032
Contig-U04312-1 (Contig-U04312-1Q) /CSM_Contig/Conti...    36  0.032
Contig-U14742-1 (Contig-U14742-1Q) /CSM_Contig/Conti...    34  0.13
Contig-U10931-1 (Contig-U10931-1Q) /CSM_Contig/Conti...    34  0.13
Contig-U10762-1 (Contig-U10762-1Q) /CSM_Contig/Conti...    34  0.13
Contig-U10379-1 (Contig-U10379-1Q) /CSM_Contig/Conti...    34  0.13
Contig-U12905-1 (Contig-U12905-1Q) /CSM_Contig/Conti...    32  0.50
Contig-U12416-1 (Contig-U12416-1Q) /CSM_Contig/Conti...    32  0.50

>Contig-U01574-1 (Contig-U01574-1Q) /CSM_Contig/Contig-U01574-1Q.Seq.d
          Length = 338

 Score =  396 bits (200), Expect = e-111
 Identities = 216/224 (96%)
 Strand = Plus / Plus

                                                                       
Query: 115 tggcatcaacagagatacctatatttacaacacctcaagaagagattcaatattggaaaa 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 tggcatcaacagagatacctatatttacaacacctcaagaagagattcaatattggaaaa 174

                                                                       
Query: 175 agagagtagaagataaacaacaagagatggacgatttagagacgacatttactgaatttc 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 agagagtagaagataaacaacaagagatggacgatttagagacgacatttactgaatttc 234

                                                                       
Query: 235 aagatttttcaaaacaattagaagaagaaatggaagatgaattaagaatctgtgnnnnnn 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 235 aagatttttcaaaacaattagaagaagaaatggaagatgaattaagaatctgtgaaaaaa 294

                                                       
Query: 295 nntgtgcagatttagcttcacaatatgcgcgattaaaaaatgat 338
             ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aatgtgcagatttagcttcacaatatgcgcgattaaaaaatgat 338


>Contig-U12746-1 (Contig-U12746-1Q) /CSM_Contig/Contig-U12746-1Q.Seq.d
          Length = 642

 Score = 36.2 bits (18), Expect = 0.032
 Identities = 30/34 (88%)
 Strand = Plus / Plus

                                             
Query: 243 tcaaaacaattagaagaagaaatggaagatgaat 276
           |||||||||  ||||||||||| |||||| ||||
Sbjct: 324 tcaaaacaagaagaagaagaaaaggaagaagaat 357


 Score = 30.2 bits (15), Expect = 2.0
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                  
Query: 254 agaagaagaaatggaagatgaat 276
           ||||||||||| |||||| ||||
Sbjct: 284 agaagaagaaaaggaagaagaat 306


>Contig-U04312-1 (Contig-U04312-1Q) /CSM_Contig/Contig-U04312-1Q.Seq.d
          Length = 460

 Score = 36.2 bits (18), Expect = 0.032
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 237 gatttttcaaaacaatta 254
           ||||||||||||||||||
Sbjct: 301 gatttttcaaaacaatta 318


  Database: CSM
    Posted date:  Jun 7, 2004  8:33 AM
  Number of letters in database: 7,895,291
  Number of sequences in database:  8361
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3740
Number of Sequences: 8361
Number of extensions: 3740
Number of successful extensions: 445
Number of sequences better than 10.0: 137
length of query: 338
length of database: 7,895,291
effective HSP length: 16
effective length of query: 322
effective length of database: 7,761,515
effective search space: 2499207830
effective search space used: 2499207830
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 5. 2
Homology vs DNA 
Query= Contig-U01574-1 (Contig-U01574-1Q) /CSM_Contig/Contig-U01574-1Q.Seq.d
         (338 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116920) Dictyostelium discoideum chromosome 2 map 4415041...   343   e-100  2
(AU071548) Dictyostelium discoideum slug cDNA, clone SSB772.      248   1e-61  1
(CQ870049) Sequence 470 from Patent WO2004074320.                  36   0.50   2
(DV634970) EST1103566 Tam Dew mature fruit library Cucumis m...    46   0.84   1
(DV634745) EST1103341 Tam Dew mature fruit library Cucumis m...    46   0.84   1
(DV634704) EST1103300 Tam Dew mature fruit library Cucumis m...    46   0.84   1
(DV632398) EST1100994 Melon mature fruit library Cucumis mel...    46   0.84   1
(AM716569) Cucumis melo subsp. agrestis EST, clone AI_21-C11...    46   0.84   1
(GD806620) 454GmaGlobSeed549269 Soybean Seeds Containing Glo...    46   0.84   1
(CP000553) Prochlorococcus marinus str. NATL1A, complete gen...    46   0.84   1
(CP000095) Prochlorococcus marinus str. NATL2A, complete gen...    46   0.84   1
(ER311043) 1092343793702 Global-Ocean-Sampling_GS-34-01-01-1...    32   2.3    3
(ER606076) 1093016276365 Global-Ocean-Sampling_GS-36-01-01-2...    32   2.4    3
(AL078579) Arabidopsis thaliana DNA chromosome 4, BAC clone ...    44   2.6    2
(AL049770) Arabidopsis thaliana DNA *** SEQUENCING IN PROGRE...    44   2.6    2
(ER406109) 1095366010907 Global-Ocean-Sampling_GS-34-01-01-1...    32   2.6    3
(BV795840) pRRL2:Newb:20080411:168370 USMARC Pig Breed SNP D...    44   3.3    1
(AC195668) Pan troglodytes BAC clone CH251-180E21 from chrom...    44   3.3    1
(AP008215) Oryza sativa (japonica cultivar-group) genomic DN...    44   3.3    1
(AP005725) Oryza sativa Japonica Group genomic DNA, chromoso...    44   3.3    1
(AP005563) Oryza sativa Japonica Group genomic DNA, chromoso...    44   3.3    1
(AM270244) Aspergillus niger contig An11c0270, complete genome.    44   3.3    1
(AL161571) Arabidopsis thaliana DNA chromosome 4, contig fra...    44   3.3    1
(EA683260) Sequence 62139 from patent US 7365185.                  44   3.3    1
(AF100657) Caenorhabditis elegans cosmid F52C12, complete se...    44   3.3    1
(AL157788) Human DNA sequence from clone RP11-498J9 on chrom...    44   3.3    1
(AC104996) Homo sapiens chromosome 17, clone RP11-1148O4, co...    44   3.3    1
(AC108722) Homo sapiens chromosome 3q clone RP11-274O4, *** ...    44   3.3    1
(AC104586) Homo sapiens chromosome 17 clone RP11-77P9 map 17...    44   3.3    1
(FP085458) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.3    1
(CU856131) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.3    1
(AC026587) Homo sapiens clone RP11-207G3, WORKING DRAFT SEQU...    44   3.3    1
(AL355175) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   3.3    1
(AC193080) Ornithorhynchus anatinus clone OA_Bb-36C16, WORKI...    44   3.3    1
(AC191487) Ornithorhynchus anatinus clone OA_Bb-306D18, WORK...    44   3.3    1
(FH950972) CHO_OF6752xn17f1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   3.3    1
(ET920435) CHO_OF305xn21r1.ab1 CHO_OF Nicotiana tabacum geno...    44   3.3    1
(CL975551) OsIFCC027783 Oryza sativa Express Library Oryza s...    44   3.3    1
(CC884575) SALK_134342.56.00.x Arabidopsis thaliana TDNA ins...    44   3.3    1
(EE473637) BNYS2DCT_UP_003_F09_27FEB2005_069 Brassica napus ...    44   3.3    1
(EE003062) ROE00002693 Rhizopus oryzae Company Rhizopus oryz...    44   3.3    1
(DR009882) Pa01_353 Pa01_AAFC_ECORC_Phytolacca_americana_lea...    44   3.3    1
(BM359241) GA__Ea0018E10r Gossypium arboreum 7-10 dpa fiber ...    44   3.3    1
(BG442777) GA__Ea0018E10f Gossypium arboreum 7-10 dpa fiber ...    44   3.3    1
(AM050692) Triticum aestivum BAC 846A11.                           36   7.7    2
(CA940826) ru69h04.y1 Heterodera glycines virgin female Hete...    32   8.4    2
(EW749876) sb_006_08K12_m13reverselong Onychiurus arcticus d...    36   9.0    2
(AC230808) Bos taurus clone CH240-498E15, WORKING DRAFT SEQU...    42   9.4    2

>(AC116920) Dictyostelium discoideum chromosome 2 map 4415041-4520361
             strain AX4, complete sequence.
          Length = 105320

 Score =  343 bits (173), Expect(2) = e-100
 Identities = 173/173 (100%)
 Strand = Plus / Minus


Query: 116   ggcatcaacagagatacctatatttacaacacctcaagaagagattcaatattggaaaaa 175
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32760 ggcatcaacagagatacctatatttacaacacctcaagaagagattcaatattggaaaaa 32701


Query: 176   gagagtagaagataaacaacaagagatggacgatttagagacgacatttactgaatttca 235
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32700 gagagtagaagataaacaacaagagatggacgatttagagacgacatttactgaatttca 32641


Query: 236   agatttttcaaaacaattagaagaagaaatggaagatgaattaagaatctgtg 288
             |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32640 agatttttcaaaacaattagaagaagaaatggaagatgaattaagaatctgtg 32588

 Score = 54.0 bits (27), Expect(2) = e-100
 Identities = 27/27 (100%)
 Strand = Plus / Minus


Query: 297   tgtgcagatttagcttcacaatatgcg 323
             |||||||||||||||||||||||||||
Sbjct: 32579 tgtgcagatttagcttcacaatatgcg 32553

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 313,612,995
Number of extensions: 19427460
Number of successful extensions: 1512305
Number of sequences better than 10.0: 48
Length of query: 338
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 315
Effective length of database: 99,442,330,388
Effective search space: 31324334072220
Effective search space used: 31324334072220
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.18
Homology vs Protein 
Query= Contig-U01574-1 (Contig-U01574-1Q) /CSM_Contig/Contig-U01574-1Q.Seq.d
         (338 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116920_15(AC116920|pid:none) Dictyostelium discoideum chromoso...   155   4e-37
(Q4P0N6) RecName: Full=Nuclear distribution protein nudE homolog...    56   3e-07
(Q803Q2) RecName: Full=Nuclear distribution protein nudE-like 1-...    49   4e-05
AE017349_249(AE017349|pid:none) Cryptococcus neoformans var. neo...    49   4e-05
EF133514_1(EF133514|pid:none) Danio rerio NudE-like protein 1a (...    49   4e-05
(Q78PB6) RecName: Full=Nuclear distribution protein nudE-like 1;...    47   2e-04
AK299559_1(AK299559|pid:none) Homo sapiens cDNA FLJ55173 complet...    47   2e-04
AL832648_1(AL832648|pid:none) Homo sapiens mRNA; cDNA DKFZp451M0...    47   2e-04
AB169818_1(AB169818|pid:none) Macaca fascicularis brain cDNA, cl...    47   2e-04
(Q9GZM8) RecName: Full=Nuclear distribution protein nudE-like 1;...    47   2e-04
BC026101_1(BC026101|pid:none) Homo sapiens nudE nuclear distribu...    47   2e-04
AX886062_1(AX886062|pid:none) Sequence 1925 from Patent EP1033401.     47   2e-04
(Q4R4S6) RecName: Full=Nuclear distribution protein nudE-like 1;...    47   2e-04
(O46480) RecName: Full=Nuclear distribution protein nudE-like 1;...    47   2e-04
BC097169_1(BC097169|pid:none) Danio rerio zgc:114109, mRNA (cDNA...    46   5e-04
PC7064(PC7064)endooligopeptidase A related protein - rabbit (fra...    45   8e-04
U95097_1(U95097|pid:none) Xenopus laevis mitotic phosphoprotein ...    44   0.002
(Q66J96) RecName: Full=Nuclear distribution protein nudE homolog...    44   0.002
(Q6NRJ5) RecName: Full=Nuclear distribution protein nudE homolog...    44   0.002
BC081759_1(BC081759|pid:none) Rattus norvegicus nudE nuclear dis...    42   0.005
(Q9ES39) RecName: Full=Nuclear distribution protein nudE homolog...    42   0.005
BC148068_1(BC148068|pid:none) Bos taurus nudE nuclear distributi...    42   0.007
AK146982_1(AK146982|pid:none) Mus musculus 16 days embryo kidney...    42   0.007
AK150826_1(AK150826|pid:none) Mus musculus bone marrow macrophag...    42   0.007
AE014296_1895(AE014296|pid:none) Drosophila melanogaster chromos...    41   0.012
CP000477_1140(CP000477|pid:none) Methanosaeta thermophila PT, co...    36   0.37
AE016796_76(AE016796|pid:none) Vibrio vulnificus CMCP6 chromosom...    36   0.37
CT005271_270(CT005271|pid:none) Leishmania major strain Friedlin...    36   0.37
BC163007_1(BC163007|pid:none) Danio rerio zgc:194470, mRNA (cDNA...    35   0.83
AM502250_87(AM502250|pid:none) Leishmania infantum chromosome 32.      35   0.83
CT005246_104(CT005246|pid:none) Leishmania major strain Friedlin...    35   1.1
AE010300_2214(AE010300|pid:none) Leptospira interrogans serovar ...    35   1.1
AE016823_1665(AE016823|pid:none) Leptospira interrogans serovar ...    35   1.1
CP000500_360(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...    35   1.1
AL049667_1(AL049667|pid:none) Human gene from PAC 434O14, chromo...    34   1.4
CP001015_115(CP001015|pid:none) Streptococcus pneumoniae G54, co...    34   1.4
EU140971_1(EU140971|pid:none) Streptococcus pneumoniae strain R3...    34   1.4
CT005269_71(CT005269|pid:none) Leishmania major strain Friedlin,...    34   1.4
EU194860_1(EU194860|pid:none) Streptococcus pneumoniae strain R3...    34   1.4
BC158922_1(BC158922|pid:none) Xenopus tropicalis intraflagellar ...    34   1.4
AM502225_103(AM502225|pid:none) Leishmania infantum chromosome 7.      34   1.8
CP001037_2139(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    34   1.8
BX571865_160(BX571865|pid:none) Photorhabdus luminescens subsp. ...    34   1.8
AF355984_1(AF355984|pid:none) Merxmuellera decora RNA polymerase...    34   1.8
L25385_1(L25385|pid:none) Phragmites australis RNA polymerase be...    34   1.8
AM406671_471(AM406671|pid:none) Lactococcus lactis subsp. cremor...    34   1.8
BC066783_1(BC066783|pid:none) Xenopus tropicalis hypothetical pr...    34   1.8
(O13335) RecName: Full=Nuclear distribution protein nudE homolog...    34   1.8
BA000038_587(BA000038|pid:none) Vibrio vulnificus YJ016 DNA, chr...    34   1.8
AM270016_24(AM270016|pid:none) Aspergillus niger contig An02c021...    34   1.8
CP000159_2061(CP000159|pid:none) Salinibacter ruber DSM 13855, c...    33   2.4
AM494944_102(AM494944|pid:none) Leishmania braziliensis chromoso...    33   2.4
CP000728_3102(CP000728|pid:none) Clostridium botulinum F str. La...    33   2.4
CP000939_2486(CP000939|pid:none) Clostridium botulinum B1 str. O...    33   2.4
CR380952_183(CR380952|pid:none) Candida glabrata strain CBS138 c...    33   2.4
CP001034_1380(CP001034|pid:none) Natranaerobius thermophilus JW/...    33   2.4
U31906_1(U31906|pid:none) Homo sapiens golgin-245 mRNA, complete...    33   2.4
FJ029109_1(FJ029109|pid:none) Bombyx mori clone C myosin heavy c...    33   3.1
AJ720929_1(AJ720929|pid:none) Gallus gallus mRNA for hypothetica...    33   3.1
FM992695_98(FM992695|pid:none) Candida dubliniensis CD36 chromos...    33   3.1
AJ248284_61(AJ248284|pid:none) Pyrococcus abyssi complete genome...    33   3.1
AL844508_36(AL844508|pid:none) Plasmodium falciparum 3D7 chromos...    33   3.1
FJ029108_1(FJ029108|pid:none) Bombyx mori clone B myosin heavy c...    33   3.1
FJ562521_1(FJ562521|pid:none) Trichopilia subulata voucher Chase...    33   4.1
AB023228_1(AB023228|pid:none) Homo sapiens mRNA for KIAA1011 pro...    33   4.1
L25379_1(L25379|pid:none) Hakonechloa macra chloroplast RNA poly...    33   4.1
U52064_1(U52064|pid:none) Kaposi's sarcoma-associated herpes-lik...    33   4.1
AY689436_82(AY689436|pid:none) Deerpox virus W-848-83, complete ...    33   4.1
AB264661_1(AB264661|pid:none) Papilio xuthus mRNA for muscle myo...    33   4.1
AF435011_1(AF435011|pid:none) Homo sapiens NUANCE (NUA) mRNA, co...    33   4.1
(Q8WXH1) RecName: Full=Nesprin-2; AltName: Full=Nuclear envelope...    33   4.1
CP000813_1909(CP000813|pid:none) Bacillus pumilus SAFR-032, comp...    33   4.1
AF305694_1(AF305694|pid:none) Kaposi's sarcoma-associated herpes...    33   4.1
CU633900_137(CU633900|pid:none) Podospora anserina genomic DNA c...    33   4.1
CP000725_761(CP000725|pid:none) Streptococcus gordonii str. Chal...    33   4.1
AF495911_1(AF495911|pid:none) Homo sapiens nesprin-2 mRNA, compl...    33   4.1
CP001558_38(CP001558|pid:none) Borrelia burgdorferi 29805 plasmi...    32   5.4
KRMS2(A02951)keratin, type II cytoskeletal - mouse (fragment)          32   5.4
AL031283_1(AL031283|pid:none) Human DNA sequence from clone RP3-...    32   5.4
AL031283_3(AL031283|pid:none) Human DNA sequence from clone RP3-...    32   5.4
CP000501_304(CP000501|pid:none) Pichia stipitis CBS 6054 chromos...    32   5.4
AL031283_2(AL031283|pid:none) Human DNA sequence from clone RP3-...    32   5.4
BC119991_1(BC119991|pid:none) Bos taurus TRAF3 interacting prote...    32   5.4
EU194865_1(EU194865|pid:none) Streptococcus pneumoniae strain RH...    32   5.4
AL031283_4(AL031283|pid:none) Human DNA sequence from clone RP3-...    32   5.4
FJ897525_1(FJ897525|pid:none) Bombyx mandarina clone B myosin he...    32   5.4
AE016817_798(AE016817|pid:none) Ashbya gossypii (= Eremothecium ...    32   5.4
AY924876_1(AY924876|pid:none) Arabidopsis thaliana hypothetical ...    32   7.0
BC090161_1(BC090161|pid:none) Xenopus laevis hypothetical protei...    32   7.0
BC137605_1(BC137605|pid:none) Mus musculus TRAF3 interacting pro...    32   7.0
BC079763_1(BC079763|pid:none) Xenopus laevis guanine nucleotide ...    32   7.0
BC072246_1(BC072246|pid:none) Xenopus laevis guanine nucleotide ...    32   7.0
(Q4I877) RecName: Full=Nuclear distribution protein nudE homolog...    32   7.0
BC053000_1(BC053000|pid:none) Mus musculus golgi autoantigen, go...    32   7.0
AE017244_235(AE017244|pid:none) Mycoplasma hyopneumoniae 7448, c...    32   7.0
CP001034_1349(CP001034|pid:none) Natranaerobius thermophilus JW/...    32   7.0
CP000858_56(CP000858|pid:none) Salmonella enterica subsp. enteri...    32   7.0
(B1AJ46) RecName: Full=Protein grpE; AltName: Full=HSP-70 cofact...    32   7.0
AE017332_145(AE017332|pid:none) Mycoplasma hyopneumoniae 232, co...    32   7.0
AY158343_1(AY158343|pid:none) Aspergillus nidulans p150 dynactin...    32   7.0
(Q97WH0) RecName: Full=DNA double-strand break repair rad50 ATPa...    32   7.0
CP001185_924(CP001185|pid:none) Thermosipho africanus TCF52B, co...    32   7.0
BC109460_1(BC109460|pid:none) Danio rerio si:dkey-72g4.2, mRNA (...    32   9.1
(Q6NZW0) RecName: Full=Coiled-coil domain-containing protein 102...    32   9.1
AF355995_1(AF355995|pid:none) Cortaderia turbaria RNA polymerase...    32   9.1
AF283816_1(AF283816|pid:none) Pinus taeda calreticulin mRNA, com...    32   9.1
AP008955_2727(AP008955|pid:none) Brevibacillus brevis NBRC 10059...    32   9.1
AB280016_1(AB280016|pid:none) Molgula tectiformis Mt-MHC1-b mRNA...    32   9.1
DQ353776_1(DQ353776|pid:none) Ictalurus punctatus isolate C45JJB...    32   9.1

>AC116920_15(AC116920|pid:none) Dictyostelium discoideum chromosome
           2 map 4415041-4520361 strain AX4, complete sequence.
          Length = 398

 Score =  155 bits (392), Expect = 4e-37
 Identities = 75/75 (100%), Positives = 75/75 (100%)
 Frame = +3

Query: 114 MASTEIPIFTTPQEEIQYWKKRVEDKQQEMDDLETTFTEFQDFSKQLEEEMEDELRICEK 293
           MASTEIPIFTTPQEEIQYWKKRVEDKQQEMDDLETTFTEFQDFSKQLEEEMEDELRICEK
Sbjct: 1   MASTEIPIFTTPQEEIQYWKKRVEDKQQEMDDLETTFTEFQDFSKQLEEEMEDELRICEK 60

Query: 294 KCADLASQYARLKND 338
           KCADLASQYARLKND
Sbjct: 61  KCADLASQYARLKND 75

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 308,394,254
Number of extensions: 4219272
Number of successful extensions: 30127
Number of sequences better than 10.0: 109
Number of HSP's gapped: 29541
Number of HSP's successfully gapped: 110
Length of query: 112
Length of database: 1,051,180,864
Length adjustment: 79
Effective length of query: 33
Effective length of database: 795,492,703
Effective search space: 26251259199
Effective search space used: 26251259199
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 28 (15.4 bits)
PSORT 

 psg: 0.84  gvh: 0.23  alm: 0.64  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for Contig-U01574-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0