Contig-U09432-1
Contig ID Contig-U09432-1
Contig update 2002. 9.13
Contig sequence
>Contig-U09432-1 (Contig-U09432-1Q) /CSM_Contig/Contig-U09432-1Q.Seq.d
AGGAAATATTTTAATATTTTATTTTTTTTATTTTTTTTATTTATTAATCA
AATATATAGTCAGTGAAATTTGGAATCTGTTATAACTACGCCAAATATCA
TTTATCCATTTGCAATCACACCATTTATCCAGGATCAGACAACCAAAGTT
TATATTTTAAATTAAGTTCAATTTTTGATTCACCAACAATTTTAAGTGGT
TATGCAGTTATTTATAATAGTTTAGATCAAATAATAACAAATGGTACTTA
TAATTTAATTTTAGATGAAGATGTCCCAACAATTGGACCAGCCACAACTG
ATGCAACTTTGGTAGATTTTAATGAATTTCAACAACAACAACAAAAATTA
TCAATAGATAGTCAACCAAGAAATAAAAGAACATGGTTAAAAGCTAAACA
AATTGCAAAGCACACATTTATAATGCCATATAGTTTATCATCATTTATGG
ATGAAACTACTAAATCATTTTATGATTATCA----------TTTAATGAT
TCACAATTGACTGAAACCACTGAAATCATTATAGATGAAATGACAGGTCA
ACAAAGACAAGTTAGTACAACTTTTACAAGTAATCATTTACCAAAATCAA
TTAGCTCTCAACTTGTTTTAGTTAATGGTTGGTCATTTTGTTATGGTATA
TTTGTTTCAAATGAAAACATTGAATCAATTCAACTTGATGGATGGAATAT
TGTTCCAATATCAATTAAATCAAACTCTTCAAATTATTGGACATCTATTG
CTAGATTAACATTATCACCTTCAGATACAAAGATTAGAATAGATATTCCA
AAGCCAATAGGATCGCAATGGAGTACAGAGTTACATTATACTCAACCTCC
TCCATTAATACCAACTTTTACAAAGAAAGTCACATTATTATCAAATCAAT
TCTATAAGATTCCACAATATTTTGGTGGTAAATATAGATATGAAAATAAA
CAAATCCAAATTTTAGTTGAATTAAATTTCACTGATACCACTCAAAAAAA
AAA

Gap gap included
Contig length 993
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 741953
End point 740957
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U09432
List of clone(s)

est1=SSI402F,1,482
est2=SSI402Z,483,995
Translated Amino Acid sequence
eif*yfiffiffiy*sni*SVKFGICYNYAKYHLSICNHTIYPGSDNQSLYFKLSSIFDS
PTILSGYAVIYNSLDQIITNGTYNLILDEDVPTIGPATTDATLVDFNEFQQQQQKLSIDS
QPRNKRTWLKAKQIAKHTFIMPYSLSSFMDETTKSFYDY---

---FNDSQLTETTEIIIDEMTGQQRQVSTTFTSNHLPKSISSQLVLVNGWSFCYGIFVSN
ENIESIQLDGWNIVPISIKSNSSNYWTSIARLTLSPSDTKIRIDIPKPIGSQWSTELHYT
QPPPLIPTFTKKVTLLSNQFYKIPQYFGGKYRYENKQIQILVELNFTDTTQKK


Translated Amino Acid sequence (All Frames)
Frame A:
rkyfnilfflfflfinqiysq*nlesvittpniiypfaitpfiqdqttkvyiln*vqfli
hqqf*vvmqlfiiv*ik**qmvlii*f*mkmsqqldqpqlmqlw*ilmnfnnnnknyq*i
vnqeikehg*klnklqsthl*chivyhhlwmkllnhfmii---

---FNDSQLTETTEIIIDEMTGQQRQVSTTFTSNHLPKSISSQLVLVNGWSFCYGIFVSN
ENIESIQLDGWNIVPISIKSNSSNYWTSIARLTLSPSDTKIRIDIPKPIGSQWSTELHYT
QPPPLIPTFTKKVTLLSNQFYKIPQYFGGKYRYENKQIQILVELNFTDTTQKK

Frame B:
gnilifyffyffyllikyivseiwnll*lrqisfihlqshhlsrirqpkfif*ikfnf*f
tnnfkwlcsyl**frsnnnkwyl*fnfr*rcpnnwtshn*cnfgrf**isttttkiinr*
stkk*knmvks*tnckahiynai*fiiiyg*ny*iil*ls---

---lmihn*lkplksl*mk*qvnkdklvqllqviiyqnqlalnlf*lmvghfvmvylfqm
ktlnqfnlmdgilfqyqlnqtlqiighllld*hyhlqiqrle*ifqsq*drngvqsyiil
nllh*yqllqrkshyyqinsirfhnilvvnidmkinkskf*ln*isliplkkk

Frame C:
eif*yfiffiffiy*sni*SVKFGICYNYAKYHLSICNHTIYPGSDNQSLYFKLSSIFDS
PTILSGYAVIYNSLDQIITNGTYNLILDEDVPTIGPATTDATLVDFNEFQQQQQKLSIDS
QPRNKRTWLKAKQIAKHTFIMPYSLSSFMDETTKSFYDY---

---**ftid*nh*nhyr*ndrstkts*ynfyk*sftkin*lstcfs*wlvillwyicfk*
kh*inst*wmeycsnin*iklfklldiyc*iniitfrykd*nryskanriameyrvtlys
tssintnfykeshiiiksil*dstifww*i*i*k*tnpnfs*ikfh*yhskkk

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U09432-1 (Contig-U09432-1Q)
/CSM_Contig/Contig-U09432-1Q.Seq.d
(1003 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U09432-1 (Contig-U09432-1Q) /CSM_Contig/Conti... 1826 0.0
Contig-U12491-1 (Contig-U12491-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U03236-1 (Contig-U03236-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U02214-1 (Contig-U02214-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U14098-1 (Contig-U14098-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U13963-1 (Contig-U13963-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U11433-1 (Contig-U11433-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U06575-1 (Contig-U06575-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U14818-1 (Contig-U14818-1Q) /CSM_Contig/Conti... 38 0.018
Contig-U14167-1 (Contig-U14167-1Q) /CSM_Contig/Conti... 38 0.018

>Contig-U09432-1 (Contig-U09432-1Q) /CSM_Contig/Contig-U09432-1Q.Seq.d
Length = 1003

Score = 1826 bits (921), Expect = 0.0
Identities = 951/951 (100%)
Strand = Plus / Plus


Query: 43 attaatcaaatatatagtcagtgaaatttggaatctgttataactacgccaaatatcatt 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43 attaatcaaatatatagtcagtgaaatttggaatctgttataactacgccaaatatcatt 102


Query: 103 tatccatttgcaatcacaccatttatccaggatcagacaaccaaagtttatattttaaat 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 tatccatttgcaatcacaccatttatccaggatcagacaaccaaagtttatattttaaat 162


Query: 163 taagttcaatttttgattcaccaacaattttaagtggttatgcagttatttataatagtt 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 taagttcaatttttgattcaccaacaattttaagtggttatgcagttatttataatagtt 222


Query: 223 tagatcaaataataacaaatggtacttataatttaattttagatgaagatgtcccaacaa 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 tagatcaaataataacaaatggtacttataatttaattttagatgaagatgtcccaacaa 282


Query: 283 ttggaccagccacaactgatgcaactttggtagattttaatgaatttcaacaacaacaac 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ttggaccagccacaactgatgcaactttggtagattttaatgaatttcaacaacaacaac 342


Query: 343 aaaaattatcaatagatagtcaaccaagaaataaaagaacatggttaaaagctaaacaaa 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aaaaattatcaatagatagtcaaccaagaaataaaagaacatggttaaaagctaaacaaa 402


Query: 403 ttgcaaagcacacatttataatgccatatagtttatcatcatttatggatgaaactacta 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ttgcaaagcacacatttataatgccatatagtttatcatcatttatggatgaaactacta 462


Query: 463 aatcattttatgattatcannnnnnnnnntttaatgattcacaattgactgaaaccactg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aatcattttatgattatcannnnnnnnnntttaatgattcacaattgactgaaaccactg 522


Query: 523 aaatcattatagatgaaatgacaggtcaacaaagacaagttagtacaacttttacaagta 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aaatcattatagatgaaatgacaggtcaacaaagacaagttagtacaacttttacaagta 582


Query: 583 atcatttaccaaaatcaattagctctcaacttgttttagttaatggttggtcattttgtt 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 atcatttaccaaaatcaattagctctcaacttgttttagttaatggttggtcattttgtt 642


Query: 643 atggtatatttgtttcaaatgaaaacattgaatcaattcaacttgatggatggaatattg 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 atggtatatttgtttcaaatgaaaacattgaatcaattcaacttgatggatggaatattg 702


Query: 703 ttccaatatcaattaaatcaaactcttcaaattattggacatctattgctagattaacat 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ttccaatatcaattaaatcaaactcttcaaattattggacatctattgctagattaacat 762


Query: 763 tatcaccttcagatacaaagattagaatagatattccaaagccaataggatcgcaatgga 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 tatcaccttcagatacaaagattagaatagatattccaaagccaataggatcgcaatgga 822


Query: 823 gtacagagttacattatactcaacctcctccattaataccaacttttacaaagaaagtca 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 gtacagagttacattatactcaacctcctccattaataccaacttttacaaagaaagtca 882


Query: 883 cattattatcaaatcaattctataagattccacaatattttggtggtaaatatagatatg 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 cattattatcaaatcaattctataagattccacaatattttggtggtaaatatagatatg 942


Query: 943 aaaataaacaaatccaaattttagttgaattaaatttcactgataccactc 993
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 aaaataaacaaatccaaattttagttgaattaaatttcactgataccactc 993


>Contig-U12491-1 (Contig-U12491-1Q) /CSM_Contig/Contig-U12491-1Q.Seq.d
Length = 677

Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 324 gaatttcaacaacaacaacaa 344
|||||||||||||||||||||
Sbjct: 372 gaatttcaacaacaacaacaa 392


Score = 32.2 bits (16), Expect = 1.1
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 332 acaacaacaacaaaaattat 351
||||||||||||| ||||||
Sbjct: 596 acaacaacaacaacaattat 615


Score = 30.2 bits (15), Expect = 4.4
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 330 caacaacaacaacaa 344
|||||||||||||||
Sbjct: 405 caacaacaacaacaa 419


Score = 30.2 bits (15), Expect = 4.4
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 330 caacaacaacaacaa 344
|||||||||||||||
Sbjct: 399 caacaacaacaacaa 413


Score = 30.2 bits (15), Expect = 4.4
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 330 caacaacaacaacaa 344
|||||||||||||||
Sbjct: 597 caacaacaacaacaa 611


Score = 30.2 bits (15), Expect = 4.4
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 330 caacaacaacaacaa 344
|||||||||||||||
Sbjct: 402 caacaacaacaacaa 416


Score = 30.2 bits (15), Expect = 4.4
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 330 caacaacaacaacaa 344
|||||||||||||||
Sbjct: 396 caacaacaacaacaa 410


>Contig-U03236-1 (Contig-U03236-1Q) /CSM_Contig/Contig-U03236-1Q.Seq.d
Length = 1207

Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 333 caacaacaacaaaaattatca 353
|||||||||||||||||||||
Sbjct: 1028 caacaacaacaaaaattatca 1048


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,132
Number of Sequences: 6905
Number of extensions: 26132
Number of successful extensions: 7203
Number of sequences better than 10.0: 990
length of query: 1003
length of database: 5,674,871
effective HSP length: 16
effective length of query: 987
effective length of database: 5,564,391
effective search space: 5492053917
effective search space used: 5492053917
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.16
Homology vs DNA
Query= Contig-U09432-1 (Contig-U09432-1Q) /CSM_Contig/Contig-U09432-1Q.Seq.d
(1003 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C90412) Dictyostelium discoideum slug cDNA, clone SSI402. 995 0.0 1
(AU073801) Dictyostelium discoideum slug cDNA, clone SSI402. 392 e-105 1
(AC223875) Bos taurus clone CH240-455G10, WORKING DRAFT SEQU... 46 5e-04 2
(AC105295) Felis catus clone RP86-177G24, WORKING DRAFT SEQU... 42 0.003 6
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 38 0.004 4
(AL590240) Human DNA sequence from clone RP11-266I3 on chrom... 46 0.004 5
(AC223814) Bos taurus clone CH240-457B3, WORKING DRAFT SEQUE... 34 0.006 12
(CU407325) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.007 2
(AC021472) Homo sapiens clone RP11-677M24, WORKING DRAFT SEQ... 44 0.008 4
(AC084079) Homo sapiens chromosome 8 clone RP11-141K9 map 8,... 38 0.024 5
(AJ011801) Solanum tuberosum rx gene. 52 0.041 1
(AF265664) Solanum tuberosum resistance gene cluster, comple... 52 0.041 1
(AF195939) Solanum tuberosum disease resistance protein Gpa2... 52 0.041 1
(AX012606) Sequence 1 from Patent WO9954490. 52 0.041 1
(FG679241) G1143P330RE12.T0 Anolis carolinensis pooled norma... 52 0.041 1
(FG679193) G1143P330FE12.T0 Anolis carolinensis pooled norma... 52 0.041 1
(CU633631) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 0.043 5
(AC023589) Homo sapiens chromosome 12 clone RP11-570M8 map 1... 36 0.058 7
(AC023762) Homo sapiens chromosome 8, clone RP11-401N18, com... 44 0.069 6
(AC166887) Sorex araneus clone SA_Ba-289E8, WORKING DRAFT SE... 40 0.099 2
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 42 0.10 9
(DU965511) 323079 Tomato MboI BAC Library Solanum lycopersic... 38 0.12 2
(AP002780) Homo sapiens genomic DNA, chromosome 11q, clone:R... 50 0.16 1
(AP002358) Homo sapiens genomic DNA, chromosome 11q clone:RP... 50 0.16 1
(AC087272) Homo sapiens chromosome 8, clone RP11-139G7, comp... 50 0.16 1
(AC126197) Rattus norvegicus clone CH230-145E6, WORKING DRAF... 50 0.16 1
(CU655872) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.16 1
(AC087689) Homo sapiens chromosome 11 clone RP11-1036E20 map... 50 0.16 1
(AC069371) Homo sapiens chromosome 11 clone RP11-181A24 map ... 50 0.16 1
(CU468473) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.16 1
(CT827824) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.16 1
(AC217094) Sus scrofa clone RP44-234H7, WORKING DRAFT SEQUEN... 50 0.16 1
(AC023272) Homo sapiens chromosome 8 clone RP11-139G7, WORKI... 50 0.16 1
(CU289663) Equus caballus GSS, BAC clone CH241-456N15, SP6 e... 50 0.16 1
(CT362788) Sus scrofa genomic clone CH242-208L21, genomic su... 50 0.16 1
(CT199030) Sus scrofa genomic clone CH242-203L14, genomic su... 50 0.16 1
(CL370737) RPCI44_300M21.f RPCI-44 Sus scrofa genomic clone ... 50 0.16 1
(CR450695) Zebrafish DNA sequence from clone DKEYP-72F10 in ... 46 0.18 3
(AY632360) Gossypium hirsutum BAC 106I22, complete sequence. 40 0.18 8
(AC115754) Mus musculus chromosome 12, clone RP23-34D20, com... 42 0.22 6
(AC023405) Homo sapiens chromosome 8, clone RP11-199K17, com... 44 0.23 4
(AC204685) Medicago truncatula clone mth2-27n7, WORKING DRAF... 42 0.26 8
(AC154868) Monodelphis domestica, clone XX-211C4, complete s... 42 0.28 6
(AC118662) Homo sapiens chromosome 17 clone RP11-142H5 map 1... 42 0.30 4
(CU928294) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 0.31 6
(AC179924) Mus musculus BAC clone RP23-270O20 from chromosom... 36 0.32 9
(AC145863) Pan troglodytes BAC clone RP43-6J8 from chromosom... 38 0.36 2
(AC151164) Bos taurus clone CH240-526E4, WORKING DRAFT SEQUE... 38 0.36 2
(AC164208) Bos taurus clone CH240-143I19, WORKING DRAFT SEQU... 38 0.36 2
(AC147278) Pan troglodytes chromosome UNK clone RP43-102C9, ... 38 0.37 2
(CU467520) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 0.37 11
(AC133353) Rattus norvegicus clone CH230-86N5, WORKING DRAFT... 36 0.38 6
(AL713926) Mouse DNA sequence from clone RP23-32H19 on chrom... 46 0.39 5
(CU468718) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.42 7
(AC161177) Mus musculus chromosome 18, clone RP24-131H12, co... 44 0.44 2
(AC003031) Human chromosome Y cosmid 30H9 genomic sequence, ... 42 0.45 2
(AF284562) Homo sapiens chromosome 8 clone CTD-2541B7 map 8q... 38 0.46 8
(CR678456) Zebrafish DNA sequence from clone DKEY-195L19 in ... 38 0.47 6
(CX987728) DOG_EST_P44C09 Canis familiaris testis cDNA Canis... 38 0.47 2
(AQ475968) CITBI-E1-2590N22.TR CITBI-E1 Homo sapiens genomic... 38 0.47 2
(DU503342) 1098553469219 CHORI-243 Ovis aries genomic clone ... 40 0.50 2
(CP000361) Arcobacter butzleri RM4018, complete genome. 34 0.51 22
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 32 0.51 18
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 36 0.56 8
(AC121568) Mus musculus BAC clone RP23-226F18 from 15, compl... 38 0.57 6
(FH455112) CHO_OF4732xn09f1.ab1 CHO_OF4 Nicotiana tabacum ge... 42 0.58 2
(AC104318) Homo sapiens chromosome 8 clone RP11-291K24, comp... 38 0.58 3
(AC091641) Homo sapiens chromosome 8 clone RP11-291K24 map 8... 38 0.58 3
(AC140183) Mus musculus BAC clone RP24-350N4 from chromosome... 48 0.65 1
(AC174344) Medicago truncatula clone mth2-167b8, complete se... 48 0.65 1
(AX344768) Sequence 193 from Patent WO0200927. 48 0.65 1
(AL356094) Human DNA sequence from clone RP11-64I5 on chromo... 48 0.65 1
(AL356053) Human DNA sequence from clone RP11-453G10 on chro... 48 0.65 1
(CU595636) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.65 1
(AL591028) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 48 0.65 1
(AC219531) Bos taurus clone CH240-330C16, WORKING DRAFT SEQU... 48 0.65 1
(AC183079) Bos taurus clone CH240-75A22, WORKING DRAFT SEQUE... 48 0.65 1
(AC183076) Bos taurus clone CH240-77J8, WORKING DRAFT SEQUEN... 48 0.65 1
(AC176072) Strongylocentrotus purpuratus clone R3-3024C18, W... 48 0.65 1
(AC170771) Bos taurus clone CH240-256C13, WORKING DRAFT SEQU... 48 0.65 1
(AC166511) Bos taurus clone CH240-179F1, WORKING DRAFT SEQUE... 48 0.65 1
(AC024455) Homo sapiens chromosome 11 clone RP11-39A5 map 11... 48 0.65 1
(ET063525) MUGQ_CH252P361E18Sp6_CP678_075 CHORI-252 Vervet M... 48 0.65 1
(ER953162) CH260-98A22_SP6 CHORI-260 Meleagris gallopavo gen... 48 0.65 1
(ER926258) MUGQ_CH252P286F12Sp6_CP421_044 CHORI-252 Vervet M... 48 0.65 1
(EI382448) POTBM78TR Solanum tuberosum RHPOTKEY BAC ends Sol... 48 0.65 1
(AL155883) Anopheles gambiae GSS SP6 end of clone 30G11 of N... 48 0.65 1
(CL389183) RPCI44_286G4.f RPCI-44 Sus scrofa genomic clone R... 48 0.65 1
(EB461197) 1099435287231 12-DrosW-std-1P6Kb Drosophila willi... 48 0.65 1
(EB459561) 1099435223095 12-DrosW-std-1P6Kb Drosophila willi... 48 0.65 1
(DY887972) CeleSEQ4862 Cunninghamella elegans pBluescript (E... 48 0.65 1
(CF087810) QHM16O14.yg.ab1 QH_M sunflower H.argophyllus Heli... 48 0.65 1
(EY009927) CBAI586.g1:P T. versicolor root tip enriched SSH ... 48 0.65 1
(EY009528) CBAI3441.b1:P T. versicolor root tip enriched SSH... 48 0.65 1
(CU928324) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 0.66 9
(AF273841) Homo sapiens SMCY (SMCY) gene, complete cds. 42 0.71 2
(AC018777) Homo sapiens clone RP11-24E17, LOW-PASS SEQUENCE ... 36 0.76 6
(AC130097) Rattus norvegicus clone CH230-177D14, *** SEQUENC... 40 0.80 6
(AC170808) Mus musculus chromosome 15 clone RP23-380K23, ***... 38 0.85 6
(AC184182) Strongylocentrotus purpuratus clone R3-4013D15, W... 46 0.86 4

>(C90412) Dictyostelium discoideum slug cDNA, clone SSI402.
Length = 513

Score = 995 bits (502), Expect = 0.0
Identities = 502/502 (100%)
Strand = Plus / Plus


Query: 492 tttaatgattcacaattgactgaaaccactgaaatcattatagatgaaatgacaggtcaa 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttaatgattcacaattgactgaaaccactgaaatcattatagatgaaatgacaggtcaa 60


Query: 552 caaagacaagttagtacaacttttacaagtaatcatttaccaaaatcaattagctctcaa 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caaagacaagttagtacaacttttacaagtaatcatttaccaaaatcaattagctctcaa 120


Query: 612 cttgttttagttaatggttggtcattttgttatggtatatttgtttcaaatgaaaacatt 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cttgttttagttaatggttggtcattttgttatggtatatttgtttcaaatgaaaacatt 180


Query: 672 gaatcaattcaacttgatggatggaatattgttccaatatcaattaaatcaaactcttca 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaatcaattcaacttgatggatggaatattgttccaatatcaattaaatcaaactcttca 240


Query: 732 aattattggacatctattgctagattaacattatcaccttcagatacaaagattagaata 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aattattggacatctattgctagattaacattatcaccttcagatacaaagattagaata 300


Query: 792 gatattccaaagccaataggatcgcaatggagtacagagttacattatactcaacctcct 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gatattccaaagccaataggatcgcaatggagtacagagttacattatactcaacctcct 360


Query: 852 ccattaataccaacttttacaaagaaagtcacattattatcaaatcaattctataagatt 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ccattaataccaacttttacaaagaaagtcacattattatcaaatcaattctataagatt 420


Query: 912 ccacaatattttggtggtaaatatagatatgaaaataaacaaatccaaattttagttgaa 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ccacaatattttggtggtaaatatagatatgaaaataaacaaatccaaattttagttgaa 480


Query: 972 ttaaatttcactgataccactc 993
||||||||||||||||||||||
Sbjct: 481 ttaaatttcactgataccactc 502

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,274,669,520
Number of extensions: 84814365
Number of successful extensions: 9506597
Number of sequences better than 10.0: 502
Length of query: 1003
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 979
Effective length of database: 97,308,875,965
Effective search space: 95265389569735
Effective search space used: 95265389569735
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.26
Homology vs Protein
Query= Contig-U09432-1 (Contig-U09432-1Q) /CSM_Contig/Contig-U09432-1Q.Seq.d
(1003 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

BA000045_2740(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ... 35 5.3

>BA000045_2740(BA000045|pid:none) Gloeobacter violaceus PCC 7421 DNA,
complete genome.
Length = 1442

Score = 34.7 bits (78), Expect = 5.3
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Frame = +3

Query: 708 ISIKSNSSNYWTSIARLTLSPSDTKIRIDIPKPIGSQWSTE---LHYTQPPPL-----IP 863
IS K S N + SI R L+ +D + RI+ KP G WS E L + QP + +
Sbjct: 1095 ISWKKYSENTYWSIRR-ELNATDDRWRIEYSKPCGRTWSKEDEALIHHQPGTIHQYTDLW 1153

Query: 864 TFTKKVTLLSNQFYKIP------QYFGGKYR 938
T K +T+ N Y P +YF YR
Sbjct: 1154 TGAKTLTIPFNNLYDRPRVLELSRYFRAAYR 1184

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,435,399,629
Number of extensions: 25775926
Number of successful extensions: 62402
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62396
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 1,040,966,779
Length adjustment: 129
Effective length of query: 205
Effective length of database: 627,614,014
Effective search space: 128660872870
Effective search space used: 128660872870
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.81 gvh: 0.41 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 0.06 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: cytoplasmic
16.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for Contig-U09432-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0