Contig-U09432-1 |
Contig ID |
Contig-U09432-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
gap included |
Contig length |
993 |
Chromosome number (1..6, M) |
5 |
Chromosome length |
5062330 |
Start point |
741953 |
End point |
740957 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
1 |
Number of EST |
2 |
Link to clone list |
U09432 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.16 |
Homology vs DNA |
Query= Contig-U09432-1 (Contig-U09432-1Q) /CSM_Contig/Contig-U09432-1Q.Seq.d (1003 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(C90412) Dictyostelium discoideum slug cDNA, clone SSI402. 995 0.0 1 (AU073801) Dictyostelium discoideum slug cDNA, clone SSI402. 392 e-105 1 (AC223875) Bos taurus clone CH240-455G10, WORKING DRAFT SEQU... 46 5e-04 2 (AC105295) Felis catus clone RP86-177G24, WORKING DRAFT SEQU... 42 0.003 6 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 38 0.004 4 (AL590240) Human DNA sequence from clone RP11-266I3 on chrom... 46 0.004 5 (AC223814) Bos taurus clone CH240-457B3, WORKING DRAFT SEQUE... 34 0.006 12 (CU407325) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.007 2 (AC021472) Homo sapiens clone RP11-677M24, WORKING DRAFT SEQ... 44 0.008 4 (AC084079) Homo sapiens chromosome 8 clone RP11-141K9 map 8,... 38 0.024 5 (AJ011801) Solanum tuberosum rx gene. 52 0.041 1 (AF265664) Solanum tuberosum resistance gene cluster, comple... 52 0.041 1 (AF195939) Solanum tuberosum disease resistance protein Gpa2... 52 0.041 1 (AX012606) Sequence 1 from Patent WO9954490. 52 0.041 1 (FG679241) G1143P330RE12.T0 Anolis carolinensis pooled norma... 52 0.041 1 (FG679193) G1143P330FE12.T0 Anolis carolinensis pooled norma... 52 0.041 1 (CU633631) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 0.043 5 (AC023589) Homo sapiens chromosome 12 clone RP11-570M8 map 1... 36 0.058 7 (AC023762) Homo sapiens chromosome 8, clone RP11-401N18, com... 44 0.069 6 (AC166887) Sorex araneus clone SA_Ba-289E8, WORKING DRAFT SE... 40 0.099 2 (AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 42 0.10 9 (DU965511) 323079 Tomato MboI BAC Library Solanum lycopersic... 38 0.12 2 (AP002780) Homo sapiens genomic DNA, chromosome 11q, clone:R... 50 0.16 1 (AP002358) Homo sapiens genomic DNA, chromosome 11q clone:RP... 50 0.16 1 (AC087272) Homo sapiens chromosome 8, clone RP11-139G7, comp... 50 0.16 1 (AC126197) Rattus norvegicus clone CH230-145E6, WORKING DRAF... 50 0.16 1 (CU655872) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.16 1 (AC087689) Homo sapiens chromosome 11 clone RP11-1036E20 map... 50 0.16 1 (AC069371) Homo sapiens chromosome 11 clone RP11-181A24 map ... 50 0.16 1 (CU468473) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.16 1 (CT827824) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.16 1 (AC217094) Sus scrofa clone RP44-234H7, WORKING DRAFT SEQUEN... 50 0.16 1 (AC023272) Homo sapiens chromosome 8 clone RP11-139G7, WORKI... 50 0.16 1 (CU289663) Equus caballus GSS, BAC clone CH241-456N15, SP6 e... 50 0.16 1 (CT362788) Sus scrofa genomic clone CH242-208L21, genomic su... 50 0.16 1 (CT199030) Sus scrofa genomic clone CH242-203L14, genomic su... 50 0.16 1 (CL370737) RPCI44_300M21.f RPCI-44 Sus scrofa genomic clone ... 50 0.16 1 (CR450695) Zebrafish DNA sequence from clone DKEYP-72F10 in ... 46 0.18 3 (AY632360) Gossypium hirsutum BAC 106I22, complete sequence. 40 0.18 8 (AC115754) Mus musculus chromosome 12, clone RP23-34D20, com... 42 0.22 6 (AC023405) Homo sapiens chromosome 8, clone RP11-199K17, com... 44 0.23 4 (AC204685) Medicago truncatula clone mth2-27n7, WORKING DRAF... 42 0.26 8 (AC154868) Monodelphis domestica, clone XX-211C4, complete s... 42 0.28 6 (AC118662) Homo sapiens chromosome 17 clone RP11-142H5 map 1... 42 0.30 4 (CU928294) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 0.31 6 (AC179924) Mus musculus BAC clone RP23-270O20 from chromosom... 36 0.32 9 (AC145863) Pan troglodytes BAC clone RP43-6J8 from chromosom... 38 0.36 2 (AC151164) Bos taurus clone CH240-526E4, WORKING DRAFT SEQUE... 38 0.36 2 (AC164208) Bos taurus clone CH240-143I19, WORKING DRAFT SEQU... 38 0.36 2 (AC147278) Pan troglodytes chromosome UNK clone RP43-102C9, ... 38 0.37 2 (CU467520) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 0.37 11 (AC133353) Rattus norvegicus clone CH230-86N5, WORKING DRAFT... 36 0.38 6 (AL713926) Mouse DNA sequence from clone RP23-32H19 on chrom... 46 0.39 5 (CU468718) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.42 7 (AC161177) Mus musculus chromosome 18, clone RP24-131H12, co... 44 0.44 2 (AC003031) Human chromosome Y cosmid 30H9 genomic sequence, ... 42 0.45 2 (AF284562) Homo sapiens chromosome 8 clone CTD-2541B7 map 8q... 38 0.46 8 (CR678456) Zebrafish DNA sequence from clone DKEY-195L19 in ... 38 0.47 6 (CX987728) DOG_EST_P44C09 Canis familiaris testis cDNA Canis... 38 0.47 2 (AQ475968) CITBI-E1-2590N22.TR CITBI-E1 Homo sapiens genomic... 38 0.47 2 (DU503342) 1098553469219 CHORI-243 Ovis aries genomic clone ... 40 0.50 2 (CP000361) Arcobacter butzleri RM4018, complete genome. 34 0.51 22 (CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 32 0.51 18 (AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 36 0.56 8 (AC121568) Mus musculus BAC clone RP23-226F18 from 15, compl... 38 0.57 6 (FH455112) CHO_OF4732xn09f1.ab1 CHO_OF4 Nicotiana tabacum ge... 42 0.58 2 (AC104318) Homo sapiens chromosome 8 clone RP11-291K24, comp... 38 0.58 3 (AC091641) Homo sapiens chromosome 8 clone RP11-291K24 map 8... 38 0.58 3 (AC140183) Mus musculus BAC clone RP24-350N4 from chromosome... 48 0.65 1 (AC174344) Medicago truncatula clone mth2-167b8, complete se... 48 0.65 1 (AX344768) Sequence 193 from Patent WO0200927. 48 0.65 1 (AL356094) Human DNA sequence from clone RP11-64I5 on chromo... 48 0.65 1 (AL356053) Human DNA sequence from clone RP11-453G10 on chro... 48 0.65 1 (CU595636) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.65 1 (AL591028) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 48 0.65 1 (AC219531) Bos taurus clone CH240-330C16, WORKING DRAFT SEQU... 48 0.65 1 (AC183079) Bos taurus clone CH240-75A22, WORKING DRAFT SEQUE... 48 0.65 1 (AC183076) Bos taurus clone CH240-77J8, WORKING DRAFT SEQUEN... 48 0.65 1 (AC176072) Strongylocentrotus purpuratus clone R3-3024C18, W... 48 0.65 1 (AC170771) Bos taurus clone CH240-256C13, WORKING DRAFT SEQU... 48 0.65 1 (AC166511) Bos taurus clone CH240-179F1, WORKING DRAFT SEQUE... 48 0.65 1 (AC024455) Homo sapiens chromosome 11 clone RP11-39A5 map 11... 48 0.65 1 (ET063525) MUGQ_CH252P361E18Sp6_CP678_075 CHORI-252 Vervet M... 48 0.65 1 (ER953162) CH260-98A22_SP6 CHORI-260 Meleagris gallopavo gen... 48 0.65 1 (ER926258) MUGQ_CH252P286F12Sp6_CP421_044 CHORI-252 Vervet M... 48 0.65 1 (EI382448) POTBM78TR Solanum tuberosum RHPOTKEY BAC ends Sol... 48 0.65 1 (AL155883) Anopheles gambiae GSS SP6 end of clone 30G11 of N... 48 0.65 1 (CL389183) RPCI44_286G4.f RPCI-44 Sus scrofa genomic clone R... 48 0.65 1 (EB461197) 1099435287231 12-DrosW-std-1P6Kb Drosophila willi... 48 0.65 1 (EB459561) 1099435223095 12-DrosW-std-1P6Kb Drosophila willi... 48 0.65 1 (DY887972) CeleSEQ4862 Cunninghamella elegans pBluescript (E... 48 0.65 1 (CF087810) QHM16O14.yg.ab1 QH_M sunflower H.argophyllus Heli... 48 0.65 1 (EY009927) CBAI586.g1:P T. versicolor root tip enriched SSH ... 48 0.65 1 (EY009528) CBAI3441.b1:P T. versicolor root tip enriched SSH... 48 0.65 1 (CU928324) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 0.66 9 (AF273841) Homo sapiens SMCY (SMCY) gene, complete cds. 42 0.71 2 (AC018777) Homo sapiens clone RP11-24E17, LOW-PASS SEQUENCE ... 36 0.76 6 (AC130097) Rattus norvegicus clone CH230-177D14, *** SEQUENC... 40 0.80 6 (AC170808) Mus musculus chromosome 15 clone RP23-380K23, ***... 38 0.85 6 (AC184182) Strongylocentrotus purpuratus clone R3-4013D15, W... 46 0.86 4
>(C90412) Dictyostelium discoideum slug cDNA, clone SSI402. Length = 513
Score = 995 bits (502), Expect = 0.0 Identities = 502/502 (100%) Strand = Plus / Plus
Query: 492 tttaatgattcacaattgactgaaaccactgaaatcattatagatgaaatgacaggtcaa 551 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tttaatgattcacaattgactgaaaccactgaaatcattatagatgaaatgacaggtcaa 60
Query: 552 caaagacaagttagtacaacttttacaagtaatcatttaccaaaatcaattagctctcaa 611 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 caaagacaagttagtacaacttttacaagtaatcatttaccaaaatcaattagctctcaa 120
Query: 612 cttgttttagttaatggttggtcattttgttatggtatatttgtttcaaatgaaaacatt 671 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 cttgttttagttaatggttggtcattttgttatggtatatttgtttcaaatgaaaacatt 180
Query: 672 gaatcaattcaacttgatggatggaatattgttccaatatcaattaaatcaaactcttca 731 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 gaatcaattcaacttgatggatggaatattgttccaatatcaattaaatcaaactcttca 240
Query: 732 aattattggacatctattgctagattaacattatcaccttcagatacaaagattagaata 791 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aattattggacatctattgctagattaacattatcaccttcagatacaaagattagaata 300
Query: 792 gatattccaaagccaataggatcgcaatggagtacagagttacattatactcaacctcct 851 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 gatattccaaagccaataggatcgcaatggagtacagagttacattatactcaacctcct 360
Query: 852 ccattaataccaacttttacaaagaaagtcacattattatcaaatcaattctataagatt 911 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ccattaataccaacttttacaaagaaagtcacattattatcaaatcaattctataagatt 420
Query: 912 ccacaatattttggtggtaaatatagatatgaaaataaacaaatccaaattttagttgaa 971 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 ccacaatattttggtggtaaatatagatatgaaaataaacaaatccaaattttagttgaa 480
Query: 972 ttaaatttcactgataccactc 993 |||||||||||||||||||||| Sbjct: 481 ttaaatttcactgataccactc 502
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,274,669,520 Number of extensions: 84814365 Number of successful extensions: 9506597 Number of sequences better than 10.0: 502 Length of query: 1003 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 979 Effective length of database: 97,308,875,965 Effective search space: 95265389569735 Effective search space used: 95265389569735 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.26 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |