| Contig-U09430-1 |
| Contig ID |
Contig-U09430-1 |
| Contig update |
2002. 9.13 |
| Contig sequence |
 |
| Gap |
gap included |
| Contig length |
2160 |
| Chromosome number (1..6, M) |
2 |
| Chromosome length |
8467578 |
| Start point |
3718870 |
| End point |
3717289 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
30 |
| Number of EST |
37 |
| Link to clone list |
U09430 |
| List of clone(s) |
est1=VFK638Z,1,551
est2=SSK287E,248,676
est3=VSE338E,254,790
est4=VSH837F,256,682
est5=VSH837Z,256,633
est6=VSA569Z,258,790
est7=SSD208E,259,678
est8=SSH176E,259,674
est9=SLH742E,261,779
est10=VSF295F,261,742
est11=VSF295Z,261,727
est12=SSF336F,262,743
est13=SSI361E,262,677
est14=SSI362F,262,677
est15=VSF492F,272,682
est16=VSF492Z,272,651
est17=VSK406E,272,724
est18=SSE664E,288,726
est19=SSC233Z,296,725
est20=SSI175Z,306,782
est21=SSB321Z,328,748
est22=SSA895Z,343,634
est23=SSF285F,424,724
est24=SSB504Z,428,678
est25=VFF669E,792,2016
est26=SFE558E,806,2027
est27=VFE396F,811,1417
est28=VFC147F,813,1336
est29=VSD326E,814,2033
est30=VFC448F,829,1272
est31=VFJ178F,847,1380
est32=SSI363F,1137,1756
est33=VFE396Z,1380,2033
est34=VFC147Z,1414,2067
est35=VFC448Z,1473,2025
est36=SSI362Z,1522,2081
est37=VSB872Z,1713,2162
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11.16 |
| Homology vs DNA |
Query= Contig-U09430-1 (Contig-U09430-1Q) /CSM_Contig/Contig-U09430-1Q.Seq.d
(2170 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU263845) Dictyostelium discoideum vegetative cDNA clone:VS... 1304 0.0 1
(BJ397982) Dictyostelium discoideum cDNA clone:dds10c15, 3' ... 1296 0.0 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 1281 0.0 6
(BJ428618) Dictyostelium discoideum cDNA clone:ddv12i18, 3' ... 1219 0.0 3
(BJ429928) Dictyostelium discoideum cDNA clone:ddv5m11, 3' e... 1176 0.0 3
(BJ429940) Dictyostelium discoideum cDNA clone:ddv5p12, 3' e... 1090 0.0 1
(C90403) Dictyostelium discoideum slug cDNA, clone SSI362. 1035 0.0 1
(AU263844) Dictyostelium discoideum vegetative cDNA clone:VS... 882 0.0 3
(BJ412817) Dictyostelium discoideum cDNA clone:ddv9p23, 5' e... 882 0.0 4
(BJ431131) Dictyostelium discoideum cDNA clone:ddv9p23, 3' e... 831 0.0 4
(BJ410454) Dictyostelium discoideum cDNA clone:ddv12i18, 5' ... 634 0.0 6
(BJ386754) Dictyostelium discoideum cDNA clone:dds10c15, 5' ... 634 0.0 6
(BJ433604) Dictyostelium discoideum cDNA clone:ddv22k10, 3' ... 601 0.0 3
(BJ411693) Dictyostelium discoideum cDNA clone:ddv5m11, 5' e... 634 0.0 3
(BJ414624) Dictyostelium discoideum cDNA clone:ddv19k19, 5' ... 626 0.0 5
(BJ411704) Dictyostelium discoideum cDNA clone:ddv5p12, 5' e... 626 0.0 3
(AU262308) Dictyostelium discoideum vegetative cDNA clone:VS... 644 0.0 3
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 392 e-175 2
(AU261571) Dictyostelium discoideum vegetative cDNA clone:VS... 392 e-175 2
(C92369) Dictyostelium discoideum slug cDNA, clone SSE664. 392 e-175 2
(C91313) Dictyostelium discoideum slug cDNA, clone SSK287. 392 e-175 2
(AU268046) Dictyostelium discoideum vegetative cDNA clone:VS... 392 e-175 2
(C92187) Dictyostelium discoideum slug cDNA, clone SSD208. 392 e-175 2
(AU038028) Dictyostelium discoideum slug cDNA, clone SSH176. 392 e-175 2
(C90402) Dictyostelium discoideum slug cDNA, clone SSI361. 392 e-175 2
(AU265319) Dictyostelium discoideum vegetative cDNA clone:VS... 392 e-175 2
(AU263032) Dictyostelium discoideum vegetative cDNA clone:VS... 385 e-173 2
(C91922) Dictyostelium discoideum slug cDNA, clone SSC233. 357 e-165 2
(AJ315489) Dictyostelium discoideum mRNA for p80 protein. 591 e-164 1
(BJ414729) Dictyostelium discoideum cDNA clone:ddv20b07, 5' ... 591 e-164 1
(BJ414605) Dictyostelium discoideum cDNA clone:ddv19d23, 5' ... 591 e-164 1
(AU265320) Dictyostelium discoideum vegetative cDNA clone:VS... 333 e-157 2
(BJ387185) Dictyostelium discoideum cDNA clone:dds12p16, 5' ... 563 e-155 1
(AU268047) Dictyostelium discoideum vegetative cDNA clone:VS... 315 e-152 2
(BJ326001) Dictyostelium discoideum cDNA clone:dda3i09, 5' e... 533 e-151 2
(BJ327272) Dictyostelium discoideum cDNA clone:dda19h20, 5' ... 482 e-148 2
(BJ325351) Dictyostelium discoideum cDNA clone:dda14b02, 5' ... 529 e-145 1
(C25658) Dictyostelium discoideum slug cDNA, clone SSA895. 515 e-141 1
(BJ324197) Dictyostelium discoideum cDNA clone:dda5a09, 5' e... 496 e-139 2
(BJ387416) Dictyostelium discoideum cDNA clone:dds2l11, 5' e... 311 e-131 3
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 266 e-128 2
(C90170) Dictyostelium discoideum slug cDNA, clone SSI175. 266 e-128 2
(AU265010) Dictyostelium discoideum vegetative cDNA clone:VS... 266 e-128 2
(AU271136) Dictyostelium discoideum vegetative cDNA clone:VS... 266 e-128 2
(AU271135) Dictyostelium discoideum vegetative cDNA clone:VS... 266 e-128 2
(AU265009) Dictyostelium discoideum vegetative cDNA clone:VS... 260 e-126 2
(AU062138) Dictyostelium discoideum slug cDNA, clone SLH742. 260 e-126 2
(AU039416) Dictyostelium discoideum slug cDNA, clone SLH742. 266 e-123 2
(BJ324316) Dictyostelium discoideum cDNA clone:dda5b21, 5' e... 448 e-123 2
(C84213) Dictyostelium discoideum slug cDNA, clone SSB321. 252 e-122 2
(BJ417574) Dictyostelium discoideum cDNA clone:ddv28f04, 5' ... 353 e-121 4
(AU073786) Dictyostelium discoideum slug cDNA, clone SSI363. 274 e-120 3
(BJ413200) Dictyostelium discoideum cDNA clone:ddv14g14, 5' ... 278 e-116 2
(AU072872) Dictyostelium discoideum slug cDNA, clone SSF285. 375 e-111 2
(AU037125) Dictyostelium discoideum slug cDNA, clone SSB504. 381 e-110 2
(AU073785) Dictyostelium discoideum slug cDNA, clone SSI362. 258 6e-81 2
(AU072894) Dictyostelium discoideum slug cDNA, clone SSF336. 258 6e-81 2
(DT454441) UWA142 cDNA library from early and middle stages ... 66 7e-23 4
(DV216768) UWA158 cDNA library from early and middle stages ... 66 7e-23 4
(EF059103) Synthetic construct Saccharomyces cerevisiae clon... 72 4e-19 4
(BJ410703) Dictyostelium discoideum cDNA clone:ddv1d16, 5' e... 105 7e-18 1
(FG091449) s13dLA34G02RT002_525669 Lupinus albus L. (white l... 58 1e-17 4
(FG092300) s13dLA48B01RT007_527371 Lupinus albus L. (white l... 58 1e-17 4
(FG090570) s13dLA17E11RT087_523735 Lupinus albus L. (white l... 58 1e-17 4
(AC186290) Solanum lycopersicum chromosome 5 clone C05HBa013... 66 2e-17 3
(BG128030) EST473676 tomato shoot/meristem Solanum lycopersi... 66 3e-17 3
(BG126504) EST472150 tomato shoot/meristem Solanum lycopersi... 66 3e-17 3
(X00725) Yeast genes for histone H3 and H4 (copy-II genes fr... 72 6e-17 4
(AY692960) Saccharomyces cerevisiae clone FLH115333.01X YBR0... 64 7e-17 4
(AX829810) Sequence 530 from Patent WO03072602. 64 7e-17 4
(AX818780) Sequence 530 from Patent EP1338608. 64 7e-17 4
(AX595962) Sequence 1616 from Patent EP1258494. 64 7e-17 4
(DB644436) Saccharomyces cerevisiae mRNA, clone: S03052-32_G... 64 1e-16 4
(DB659412) Saccharomyces cerevisiae mRNA, clone: Y054_I18_F.... 64 2e-16 4
(DB641672) Saccharomyces cerevisiae mRNA, clone: S03052-19_I... 64 3e-16 4
(DB662512) Saccharomyces cerevisiae mRNA, clone: Y079_G10_F.... 64 3e-16 4
(DB647773) Saccharomyces cerevisiae mRNA, clone: S03052-50_M... 64 3e-16 4
(DB642787) Saccharomyces cerevisiae mRNA, clone: S03052-24_F... 64 3e-16 4
(DB660094) Saccharomyces cerevisiae mRNA, clone: Y058_P17_F.... 64 3e-16 4
(DB645850) Saccharomyces cerevisiae mRNA, clone: S03052-41_D... 64 3e-16 4
(DB663668) Saccharomyces cerevisiae mRNA, clone: Y087_I14_F.... 64 3e-16 4
(DB641132) Saccharomyces cerevisiae mRNA, clone: S03052-17_E... 64 3e-16 4
(DB639082) Saccharomyces cerevisiae mRNA, clone: S03052-08_I... 64 3e-16 4
(DB647502) Saccharomyces cerevisiae mRNA, clone: S03052-49_G... 64 3e-16 4
(DB659195) Saccharomyces cerevisiae mRNA, clone: Y052_H12_F.... 64 4e-16 4
(DB656330) Saccharomyces cerevisiae mRNA, clone: Y034_H10_F.... 64 5e-16 4
(BM108670) EST556194 potato roots Solanum tuberosum cDNA clo... 66 9e-16 3
(AX536436) Sequence 37 from Patent WO02064766. 64 1e-15 4
(AR941423) Sequence 37 from patent US 7101990. 64 1e-15 4
(CK719509) 19748 Swollen Stolon Solanum tuberosum cDNA, mRNA... 66 2e-15 3
(CV003902) csa02-3ms2-f02 Csa02 Cucumis sativus cDNA clone c... 48 2e-15 4
(CK755431) csa01-1ms1-c09 Csa01 Cucumis sativus cDNA clone c... 48 2e-15 4
(CV002879) csa02-4ms3-c11 Csa02 Cucumis sativus cDNA clone c... 48 2e-15 4
(BM111339) EST558875 potato roots Solanum tuberosum cDNA clo... 66 2e-15 3
(BM111725) EST559261 potato roots Solanum tuberosum cDNA clo... 66 2e-15 3
(BG595694) EST494372 cSTS Solanum tuberosum cDNA clone cSTS1... 66 2e-15 3
(AM906492) Solanum tuberosum EST, clone 5D3. 66 3e-15 3
(AM906734) Solanum tuberosum EST, clone 8A2. 66 3e-15 3
(DB645109) Saccharomyces cerevisiae mRNA, clone: S03052-37_E... 60 4e-15 4
(DB650230) Saccharomyces cerevisiae mRNA, clone: S03052-76_C... 58 5e-15 4
>(AU263845) Dictyostelium discoideum vegetative cDNA clone:VSD326, 3'
end single read.
Length = 658
Score = 1304 bits (658), Expect = 0.0
Identities = 658/658 (100%)
Strand = Plus / Plus
Query: 1385 aggaaaaaatcaagaagataacgacggaaccagtattattattcattgataaactcactc 1444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggaaaaaatcaagaagataacgacggaaccagtattattattcattgataaactcactc 60
Query: 1445 atttactcacagcatatccagttaaaatgataatggattgtttaattctatcaccattat 1504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atttactcacagcatatccagttaaaatgataatggattgtttaattctatcaccattat 120
Query: 1505 caatgggtgttgcagatgttattaaatcatttattaatagaaatggtgtttcagaactca 1564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caatgggtgttgcagatgttattaaatcatttattaatagaaatggtgtttcagaactca 180
Query: 1565 ccaaagtatcatttagatctaatagtatctttgactcattctcattaagtaatttatatt 1624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccaaagtatcatttagatctaatagtatctttgactcattctcattaagtaatttatatt 240
Query: 1625 atggtgcaatttatgtaattccattaatgattgcatctcaacaaattagaaaatttgtaa 1684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atggtgcaatttatgtaattccattaatgattgcatctcaacaaattagaaaatttgtaa 300
Query: 1685 atttttcaacattgaaattaaagaattacgttgaagaaagacaagacaccattaatccat 1744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atttttcaacattgaaattaaagaattacgttgaagaaagacaagacaccattaatccat 360
Query: 1745 tcataaagtattcatcttatttacttacaaatgttatatcaacatcaatcattaaatcag 1804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcataaagtattcatcttatttacttacaaatgttatatcaacatcaatcattaaatcag 420
Query: 1805 ccttaactgcaccactctatgtcttgtcatcctgttatccaagtcaattaatctcttcat 1864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ccttaactgcaccactctatgtcttgtcatcctgttatccaagtcaattaatctcttcat 480
Query: 1865 atattcaaggtgttgaagtgccagctgcaataaatccaatcactttagcaattcaacttt 1924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atattcaaggtgttgaagtgccagctgcaataaatccaatcactttagcaattcaacttt 540
Query: 1925 atcatcataatggtttatcttacttttataaaggtatagttccactcactggttttagaa 1984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atcatcataatggtttatcttacttttataaaggtatagttccactcactggttttagaa 600
Query: 1985 tatttgaaagtttagctcgtatttgtaatcctgctccaattgatacttattttgtttc 2042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tatttgaaagtttagctcgtatttgtaatcctgctccaattgatacttattttgtttc 658
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,265,369,281
Number of extensions: 136856627
Number of successful extensions: 10944632
Number of sequences better than 10.0: 3867
Length of query: 2170
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 2146
Effective length of database: 97,308,875,965
Effective search space: 208824847820890
Effective search space used: 208824847820890
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
|
| protein update |
2009. 6.26 |
| Homology vs Protein |
Query= Contig-U09430-1 (Contig-U09430-1Q) /CSM_Contig/Contig-U09430-1Q.Seq.d
(2170 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q7YXD4) RecName: Full=Protein P80; AltName: Full=Endosomal memb... 214 1e-53
S14185(S14185)histone H4 (clone H4g) - Stylonychia lemnae 109 5e-22
(P50566) RecName: Full=Histone H4; &L41841_2(L41841|pid:none) &... 108 1e-21
S10076(S10076) histone H4.2 - slime mold (Physarum polycephalum)... 107 1e-21
(P82888) RecName: Full=Histone H4; 104 2e-21
(Q6WV74) RecName: Full=Histone H4; &AY267751_1(AY267751|pid:none) 104 2e-21
AB326385_1(AB326385|pid:none) Hyla japonica gene for histone H4,... 107 2e-21
(Q9U7D0) RecName: Full=Histone H4; &AF140034_1(AF140034|pid:none) 106 4e-21
(P35057) RecName: Full=Histone H4; &(Q6V9I2) RecName: Fu &(Q71V... 105 5e-21
AB105183_1(AB105183|pid:none) Drosophila sechellia H4, H2A, H2B,... 103 5e-21
EU964788_1(EU964788|pid:none) Zea mays clone 281545 histone H4 m... 105 7e-21
(Q43083) RecName: Full=Histone H4; &X77806_1(X77806|pid:none) 105 7e-21
FB916070_1(FB916070|pid:none) Sequence 135343 from Patent WO2008... 104 7e-21
EZ000576_1(EZ000576|pid:none) TSA: Culex tarsalis Ctar-575 histo... 105 9e-21
BC128105_1(BC128105|pid:none) Homo sapiens histone cluster 2, H4... 105 9e-21
(P84040) RecName: Full=Histone H4; &(P84041) RecName: Fu &(P840... 105 9e-21
AB264615_1(AB264615|pid:none) Cucumis sativus mRNA for histone H... 105 9e-21
CP000581_645(CP000581|pid:none) Ostreococcus lucimarinus CCE9901... 105 9e-21
AY450353_1(AY450353|pid:none) Bos grunniens histone H4.1 mRNA, p... 105 9e-21
BT080465_1(BT080465|pid:none) Caligus clemensi clone ccle-evs-51... 105 9e-21
CP001160_137(CP001160|pid:none) Thalassiosira pseudonana CCMP133... 105 9e-21
AY893103_1(AY893103|pid:none) Synthetic construct Homo sapiens c... 105 9e-21
BC111813_1(BC111813|pid:none) Mus musculus histone cluster 4, H4... 105 9e-21
BT080507_1(BT080507|pid:none) Caligus clemensi clone ccle-evs-50... 105 9e-21
BC019757_1(BC019757|pid:none) Mus musculus histone 2, H4, mRNA (... 105 9e-21
BC115446_1(BC115446|pid:none) Mus musculus histone cluster 1, H4... 105 9e-21
CR382129_436(CR382129|pid:none) Yarrowia lipolytica strain CLIB1... 105 9e-21
(P40287) RecName: Full=Histone H4; &L35898_1(L35898|pid:none) &... 105 9e-21
EU960358_1(EU960358|pid:none) Zea mays clone 224159 histone H4 m... 104 9e-21
EU973856_1(EU973856|pid:none) Zea mays clone 422358 histone H4 m... 104 1e-20
AY389648_1(AY389648|pid:none) Hyacinthus orientalis histone H4 m... 104 1e-20
EU959109_1(EU959109|pid:none) Zea mays clone 210440 histone H4 m... 104 1e-20
EU964018_1(EU964018|pid:none) Zea mays clone 275215 histone H4 m... 104 1e-20
AP008207_2997(AP008207|pid:none) Oryza sativa (japonica cultivar... 104 1e-20
DQ400915_1(DQ400915|pid:none) Elaeis guineensis histone 4 mRNA, ... 104 1e-20
EU958611_1(EU958611|pid:none) Zea mays clone 1705629 histone H4 ... 104 1e-20
BT038743_1(BT038743|pid:none) Zea mays full-length cDNA clone ZM... 104 1e-20
EU958559_1(EU958559|pid:none) Zea mays clone 1702868 histone H4 ... 104 1e-20
FB915974_1(FB915974|pid:none) Sequence 135247 from Patent WO2008... 104 1e-20
EU959337_1(EU959337|pid:none) Zea mays clone 216786 histone H4 m... 104 1e-20
EU965055_1(EU965055|pid:none) Zea mays clone 283480 histone H4 m... 104 1e-20
(P59259) RecName: Full=Histone H4; &(P62785) RecName: Fu &(P627... 104 1e-20
EU551759_1(EU551759|pid:none) Capsella bursa-pastoris histone 4 ... 104 1e-20
FB916060_1(FB916060|pid:none) Sequence 135333 from Patent WO2008... 104 1e-20
EU973811_1(EU973811|pid:none) Zea mays clone 417840 unknown mRNA. 104 1e-20
FB916028_1(FB916028|pid:none) Sequence 135301 from Patent WO2008... 104 1e-20
EU652315_6(EU652315|pid:none) Adineta vaga speckle-type POZ prot... 104 1e-20
X98016_2(X98016|pid:none) T.vaginalis DNA for histone H4-2 and h... 104 1e-20
AJ494855_1(AJ494855|pid:none) Oikopleura dioica partial mRNA for... 103 2e-20
BC122463_1(BC122463|pid:none) Danio rerio zgc:154164, mRNA (cDNA... 103 2e-20
AM920427_1244(AM920427|pid:none) Penicillium chrysogenum Wiscons... 103 2e-20
(Q8J1L3) RecName: Full=Histone H4; &AJ535732_1(AJ535732|pid:none) 103 2e-20
AE017343_158(AE017343|pid:none) Cryptococcus neoformans var. neo... 103 2e-20
(P04914) RecName: Full=Histone H4; &(Q711M0) RecName: Fu &(Q7LK... 103 3e-20
AB280787_1(AB280787|pid:none) Nicotiana tabacum NtH4 mRNA for hi... 103 3e-20
(P23750) RecName: Full=Histone H4.1; &(Q76MU7) RecName: Fu &AB0... 103 3e-20
BC130133_1(BC130133|pid:none) Xenopus laevis cDNA clone MGC:1606... 103 3e-20
FB915942_1(FB915942|pid:none) Sequence 135215 from Patent WO2008... 103 3e-20
JS0314(JS0314)histone H4 - Caenorhabditis elegans 103 3e-20
EU963903_1(EU963903|pid:none) Zea mays clone 273944 histone H4 m... 103 3e-20
(P62792) RecName: Full=Histone H4; &(P62793) RecName: Fu &S2563... 103 3e-20
(Q9HDF5) RecName: Full=Histone H4; &AJ249812_2(AJ249812|pid:non... 103 3e-20
BC141999_1(BC141999|pid:none) Bos taurus histone H4-like, mRNA (... 103 3e-20
CP000881_46(CP000881|pid:none) Hemiselmis andersenii chromosome ... 103 3e-20
CR382133_439(CR382133|pid:none) Debaryomyces hansenii strain CBS... 103 3e-20
FB916024_1(FB916024|pid:none) Sequence 135297 from Patent WO2008... 103 3e-20
S03427(S03427) histone H4 (clone 53) - mouse &X13236_1(X13236|p... 103 3e-20
EU953375_1(EU953375|pid:none) Zea mays clone 1404302 histone H4 ... 103 3e-20
AF517877_1(AF517877|pid:none) Griffithsia japonica isolate Gj458... 102 4e-20
T27741(T27741)hypothetical protein ZK131.4 - Caenorhabditis eleg... 102 4e-20
HSUR4(D93719;A91430;A02642) histone H4 - sea urchin (Psammechinu... 102 4e-20
FN392320_1120(FN392320|pid:none) Pichia pastoris GS115 chromosom... 102 4e-20
Y16587_1(Y16587|pid:none) Paracentrotus lividus histone H4 gene,... 102 4e-20
(P91882) RecName: Full=Histone H4; &X91510_1(X91510|pid:none) 102 4e-20
BC167143_1(BC167143|pid:none) Xenopus tropicalis hypothetical pr... 102 6e-20
EF084528_1(EF084528|pid:none) Picea sitchensis clone WS0287_G13 ... 102 6e-20
AF506071_1(AF506071|pid:none) Euplotes aediculatus macronuclear ... 102 6e-20
(Q8NIQ8) RecName: Full=Histone H4.2; &AJ314854_1(AJ314854|pid:n... 102 6e-20
BC122275_1(BC122275|pid:none) Danio rerio zgc:153409, mRNA (cDNA... 102 6e-20
AB070962_1(AB070962|pid:none) Paramecium caudatum gene for histo... 100 7e-20
EU958616_1(EU958616|pid:none) Zea mays clone 1705913 histone H4 ... 102 7e-20
(Q8MTV8) RecName: Full=Histone H4; &AY064471_1(AY064471|pid:non... 102 7e-20
CU638744_167(CU638744|pid:none) Podospora anserina genomic DNA c... 102 7e-20
(P27996) RecName: Full=Histone H4; &S20677(S20677) &X54115_1(X5... 101 1e-19
FB916068_1(FB916068|pid:none) Sequence 135341 from Patent WO2008... 101 1e-19
HSTE41(A02648)histone H4, major - Tetrahymena pyriformis 101 1e-19
AY961939_1(AY961939|pid:none) Picea abies histone 4 (H4) mRNA, c... 101 1e-19
AF165818_30(AF165818|pid:none) Guillardia theta nucleomorph chro... 99 1e-19
(Q27443) RecName: Full=Histone H4; &Z69289_1(Z69289|pid:none) 101 1e-19
(Q6ZXX3) RecName: Full=Histone H4; &FB915960_1(FB915960|pid:non... 101 1e-19
CR940353_618(CR940353|pid:none) Theileria annulata strain Ankara... 101 1e-19
(P91890) RecName: Full=Histone H4; &X91515_1(X91515|pid:none) 100 2e-19
X91513_1(X91513|pid:none) D.pini mRNA for histone H4. 100 2e-19
AE014186_47(AE014186|pid:none) Plasmodium falciparum 3D7 chromos... 100 2e-19
X00038_1(X00038|pid:none) Human H4 histone gene. 100 2e-19
(Q8T7J8) RecName: Full=Histone H4; &AF361948_1(AF361948|pid:none) 100 2e-19
CP000500_263(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 100 2e-19
(P80739) RecName: Full=Histone H4; &U75430_1(U75430|pid:none) 100 2e-19
AY650011_1(AY650011|pid:none) Petunia x hybrida histone H4 (H4) ... 99 8e-19
(P83865) RecName: Full=Histone H4; 98 1e-18
FB334618_1(FB334618|pid:none) Sequence 2144 from Patent WO200711... 98 1e-18
(Q75AX1) RecName: Full=Histone H4.2; &AE016818_358(AE016818|pid... 97 3e-18
X91512_1(X91512|pid:none) D.pini mRNA for histone H4, isoforme 2. 96 5e-18
EU973795_1(EU973795|pid:none) Zea mays clone 415791 hypothetical... 95 9e-18
AY651828_6(AY651828|pid:none) Cotesia plutellae polydnavirus seg... 94 2e-17
DQ839631_1(DQ839631|pid:none) Cotesia glomerata bracovirus putat... 94 2e-17
U65675_1(U65675|pid:none) Plasmodium falciparum histone H4 gene,... 94 3e-17
X97995_1(X97995|pid:none) B.japonicum H4 gene fragment, clone Bj... 87 1e-16
FN357421_22(FN357421|pid:none) Schistosoma mansoni genome sequen... 91 2e-16
AM457052_1(AM457052|pid:none) Vitis vinifera contig VV78X224017.... 91 2e-16
I48404(I48404) histone H4 (55AA) (1 is 3rd base in codon) - mous... 87 2e-15
AJ786405_1(AJ786405|pid:none) Bathymodiolus azoricus partial mR... 84 3e-15
X95689_1(X95689|pid:none) A.cepa mRNA for histone H4. 87 3e-15
(P90516) RecName: Full=Histone H4; Flags: Fragment; &X97996_1(X... 84 6e-15
AJ786404_1(AJ786404|pid:none) Bathymodiolus thermophilus partial... 84 2e-14
AJ314736_1(AJ314736|pid:none) Colletotrichum sp. partial H4 gene... 83 4e-14
EU116020_2(EU116020|pid:none) Dunaliella salina histone H3 (dh3)... 83 5e-14
AJ505019_1(AJ505019|pid:none) Daucus carota partial h4 gene for ... 80 5e-14
AC116668_19(AC116668|pid:none) Trypanosoma brucei chromosome 5 c... 79 5e-13
DQ092887_1(DQ092887|pid:none) Mesocestoides corti histone H4 (H4... 79 9e-13
AJ004703_1(AJ004703|pid:none) Blepharisma sp. DNA for histone H4... 74 1e-12
AY226559_1(AY226559|pid:none) Eschscholzia californica subsp. ca... 76 1e-12
AM502233_1(AM502233|pid:none) Leishmania infantum chromosome 15.... 77 2e-12
Y13916_1(Y13916|pid:none) Leishmania infantum cDNA for H4 histon... 77 2e-12
AL445678_5(AL445678|pid:none) Leishmania major Friedlin chromoso... 77 2e-12
AM502224_1(AM502224|pid:none) Leishmania infantum chromosome 6. 77 3e-12
AF175386_1(AF175386|pid:none) Leishmania tarentolae histone H4 m... 77 3e-12
AM502253_139(AM502253|pid:none) Leishmania infantum chromosome 35. 76 4e-12
AY233048_1(AY233048|pid:none) Sterkiella historiomuscorum paralo... 76 6e-12
AM494939_5(AM494939|pid:none) Leishmania braziliensis chromosome... 76 6e-12
AJ004704_1(AJ004704|pid:none) Blepharisma undulans DNA for histo... 71 7e-12
CU638743_182(CU638743|pid:none) Podospora anserina genomic DNA c... 75 7e-12
AJ698352_1(AJ698352|pid:none) Euplotes vannus macronuclear gene ... 75 1e-11
AM494952_1(AM494952|pid:none) Leishmania braziliensis chromosome... 75 1e-11
AM494939_2(AM494939|pid:none) Leishmania braziliensis chromosome... 75 1e-11
AM494972_7(AM494972|pid:none) Leishmania braziliensis chromosome... 75 1e-11
AM494972_13(AM494972|pid:none) Leishmania braziliensis chromosom... 75 1e-11
AM494960_183(AM494960|pid:none) Leishmania braziliensis chromoso... 75 1e-11
AM494971_123(AM494971|pid:none) Leishmania braziliensis chromoso... 75 1e-11
AJ314723_1(AJ314723|pid:none) Colletotrichum acutatum partial H4... 74 2e-11
EU958484_1(EU958484|pid:none) Zea mays clone 1695940 histone H4 ... 74 3e-11
AJ004707_1(AJ004707|pid:none) Euplotes vannus DNA for histone H4... 74 3e-11
DQ445629_1(DQ445629|pid:none) Giardia intestinalis strain WP clo... 72 6e-11
AY233050_1(AY233050|pid:none) Nyctotherus ovalis paralog 1 histo... 72 1e-10
AY233060_1(AY233060|pid:none) Blepharisma americanum paralog 3 h... 71 1e-10
DQ087969_1(DQ087969|pid:none) Leishmania donovani clone B1 histo... 71 2e-10
AY233055_1(AY233055|pid:none) Nyctotherus ovalis paralog 5 histo... 70 2e-10
AY233083_1(AY233083|pid:none) Tokophrya lemnarum clone 1 histone... 69 5e-10
EU293958_1(EU293958|pid:none) Diophrys apoligothrix voucher YJP-... 69 7e-10
AY233062_1(AY233062|pid:none) Blepharisma americanum paralog 5 h... 69 7e-10
EU293964_1(EU293964|pid:none) Paradiophrys irmgard voucher LH-20... 68 1e-09
BC140472_1(BC140472|pid:none) Bos taurus deoxycytidine kinase, m... 68 2e-09
AY233085_1(AY233085|pid:none) Tokophrya lemnarum clone 3 histone... 68 2e-09
EU293959_1(EU293959|pid:none) Diophrys appendiculata voucher QD0... 67 3e-09
AY233079_1(AY233079|pid:none) Pleuronema sp. LLK-2003 paralog 1 ... 67 3e-09
AJ314726_1(AJ314726|pid:none) Colletotrichum gloeosporioides par... 66 5e-09
AY233072_1(AY233072|pid:none) Heliophrya erhardi paralog 3 histo... 66 5e-09
AY233082_1(AY233082|pid:none) Pleuronema sp. LLK-2003 paralog 3 ... 66 5e-09
AY233081_1(AY233081|pid:none) Pleuronema sp. LLK-2003 paralog 2 ... 66 6e-09
DQ901546_1(DQ901546|pid:none) Crassostrea virginica histone 4 (H... 66 6e-09
AF527985_1(AF527985|pid:none) Chilodonella uncinata clone 5 hist... 66 6e-09
AY233070_1(AY233070|pid:none) Heliophrya erhardi paralog 1 clone... 65 1e-08
AY233071_1(AY233071|pid:none) Heliophrya erhardi paralog 2 histo... 65 1e-08
AY233054_1(AY233054|pid:none) Nyctotherus ovalis paralog 4 histo... 65 1e-08
EU971558_1(EU971558|pid:none) Zea mays clone 367140 unknown mRNA. 64 2e-08
EU293961_1(EU293961|pid:none) Diophrys scutum voucher QD061210 h... 64 3e-08
AY233068_1(AY233068|pid:none) Heliophrya erhardi paralog 1 clone... 64 3e-08
AY233051_1(AY233051|pid:none) Nyctotherus ovalis paralog 2 clone... 63 4e-08
AY233069_1(AY233069|pid:none) Heliophrya erhardi paralog 1 clone... 62 7e-08
AF527983_1(AF527983|pid:none) Chilodonella uncinata clone 3 hist... 61 1e-07
AY233076_1(AY233076|pid:none) Halteria grandinella paralog 2 clo... 61 1e-07
DQ646486_1(DQ646486|pid:none) Chlamydomonas reinhardtii transmem... 59 6e-07
AY675281_1(AY675281|pid:none) Mammuthus primigenius histone H4 g... 57 3e-06
AY675260_1(AY675260|pid:none) Gallus gallus histone H4 gene, par... 57 4e-06
AJ004689_2(AJ004689|pid:none) Blepharisma undulans DNA for histo... 52 4e-06
AJ004713_2(AJ004713|pid:none) Prorodon teres DNA for histone H3 ... 51 4e-06
EU958698_1(EU958698|pid:none) Zea mays clone 1710162 unknown mRNA. 56 6e-06
AY233075_1(AY233075|pid:none) Halteria grandinella paralog 2 clo... 56 6e-06
AY675279_1(AY675279|pid:none) Suricata suricatta histone H4 gene... 55 8e-06
AY675292_1(AY675292|pid:none) Callithrix geoffroyi histone H4 ge... 55 1e-05
AY675276_1(AY675276|pid:none) Planorbis corneus histone H4 gene,... 55 1e-05
AY233066_1(AY233066|pid:none) Bursaria truncatella paralog 2 clo... 54 2e-05
AY675277_1(AY675277|pid:none) Saguinus oedipus histone H4 gene, ... 54 3e-05
AM494967_45(AM494967|pid:none) Leishmania braziliensis chromosom... 52 9e-05
AJ004696_2(AJ004696|pid:none) Obertrumia georgiana DNA for histo... 49 9e-05
AJ004697_2(AJ004697|pid:none) Obertrumia georgiana DNA for histo... 48 2e-04
AF008301_1(AF008301|pid:none) Ambystoma mexicanum histone H4 (H4... 50 3e-04
AJ004695_2(AJ004695|pid:none) Obertrumia georgiana DNA for histo... 47 3e-04
AM494958_2(AM494958|pid:none) Leishmania braziliensis chromosome... 50 4e-04
AY559145_2(AY559145|pid:none) Succinea putris isolate 33 histone... 49 6e-04
AJ004700_1(AJ004700|pid:none) Paramecium tetraurelia DNA for his... 47 0.002
DQ001061_1(DQ001061|pid:none) Paramecium jenningsi from Japan hi... 45 0.008
AJ004699_1(AJ004699|pid:none) Paramecium tetraurelia DNA for his... 45 0.011
(Q5BH63) RecName: Full=Survival factor 1; 45 0.014
U82930_1(U82930|pid:none) Drosophila virilis histone H4 (H4) gen... 44 0.024
CP000102_121(CP000102|pid:none) Methanosphaera stadtmanae DSM 30... 42 0.070
A02650(A02650)histone H4 - Tetrahymena thermophila (fragments) 37 0.17
AF216837_1(AF216837|pid:none) Drosophila virilis clone p3.6-33 h... 39 1.0
(O28779) RecName: Full=Probable archaeal histone A1-2; &AE00078... 38 1.3
AY936210_1(AY936210|pid:none) Rattus norvegicus pro-histogranin ... 37 2.9
T22145(T22145) hypothetical protein F43G9.3 - Caenorhabditis ele... 37 2.9
CP000743_1288(CP000743|pid:none) Methanococcus aeolicus Nankai-3... 36 5.0
CP000976_395(CP000976|pid:none) Borrelia duttonii Ly, complete g... 36 5.0
CP000993_386(CP000993|pid:none) Borrelia recurrentis A1, complet... 36 5.0
(P79110) RecName: Full=Tricarboxylate transport protein, mitocho... 36 5.0
BC160734_1(BC160734|pid:none) Xenopus laevis hypothetical protei... 36 6.5
DQ090941_1(DQ090941|pid:none) Cenarchaeum symbiosum histone (his... 36 6.5
T18672(T18672)hypothetical protein B0240.3 - Caenorhabditis eleg... 36 6.6
(A9IRA0) RecName: Full=Prolipoprotein diacylglyceryl transferase... 36 6.6
Z74026_1(Z74026|pid:none) Caenorhabditis elegans Cosmid B0240, c... 36 6.6
C30309(C30309)histone H4 - Euplotes crassus (fragment) 35 8.5
CP000769_2860(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, c... 35 8.6
AM746676_7750(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 35 8.6
>(Q7YXD4) RecName: Full=Protein P80; AltName: Full=Endosomal
membrane protein; Flags: Precursor;
&AJ315489_1(AJ315489|pid:none)
Length = 530
Score = 214 bits (545), Expect = 1e-53
Identities = 99/99 (100%), Positives = 99/99 (100%)
Frame = +1
Query: 1 CLAMPEMGQCANWTQMCASSGNMASSPISSGICTDEPTPATDCFTNPSDPSCADYVYTAA 180
CLAMPEMGQCANWTQMCASSGNMASSPISSGICTDEPTPATDCFTNPSDPSCADYVYTAA
Sbjct: 165 CLAMPEMGQCANWTQMCASSGNMASSPISSGICTDEPTPATDCFTNPSDPSCADYVYTAA 224
Query: 181 NANADILNLCKSMPYMTVCSIQKSCNQESSTSGICAPFS 297
NANADILNLCKSMPYMTVCSIQKSCNQESSTSGICAPFS
Sbjct: 225 NANADILNLCKSMPYMTVCSIQKSCNQESSTSGICAPFS 263
Score = 89.7 bits (221), Expect = 4e-16
Identities = 41/58 (70%), Positives = 45/58 (77%)
Frame = +1
Query: 124 DCFTNPSDPSCADYVYTAANANADILNLCKSMPYMTVCSIQKSCNQESSTSGICAPFS 297
DC TN SD SC ++ Y AN ADI NLC SMPYM VC+IQ+SCNQESSTSGIC PFS
Sbjct: 25 DCVTNSSDASCTNFQYPLANITADINNLCGSMPYMPVCTIQQSCNQESSTSGICDPFS 82
Score = 52.8 bits (125), Expect = 5e-05
Identities = 23/56 (41%), Positives = 31/56 (55%)
Frame = +1
Query: 1 CLAMPEMGQCANWTQMCASSGNMASSPISSGICTDEPTPATDCFTNPSDPSCADYV 168
C+AMP+M QCANWT+MC+SSG + +S I+S C A DY+
Sbjct: 348 CMAMPDMSQCANWTKMCSSSGQLYNSQITSDYCVASVADAVPIMRMYFHTGILDYI 403
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 2,874,488,622
Number of extensions: 52243921
Number of successful extensions: 127263
Number of sequences better than 10.0: 213
Number of HSP's gapped: 127098
Number of HSP's successfully gapped: 236
Length of query: 723
Length of database: 1,040,966,779
Length adjustment: 136
Effective length of query: 587
Effective length of database: 605,184,019
Effective search space: 355243019153
Effective search space used: 355243019153
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
8 |
| VH (FL, L) |
0 |
| VF (FL, S) |
6 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
1 |
| SS (DIR, S) |
14 |
| SH (FL, L) |
0 |
| SF (FL, S) |
1 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |