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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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Contig-U09415-1
Contig ID Contig-U09415-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U09415-1 (Contig-U09415-1Q) /CSM_Contig/Contig-U09415-1Q.Seq.d
TTTTTTTTTTTTATTTTTTATTTGAATTTTATTATTAAAATTATAAAATT
AGTATATAATAATAATAATAACAATAATAATTAAAATAATTAAAATAATG
ATTAAAAATTATAAATTACTTTTATTTACAACATTCACTTTATTTTTTAT
TACATTTGTAAGTGGTAGTAGTATTTTAAAAGCAAACTTTTATTATAAAG
TTGATTGGGAAAATGTTCAATGTTTCGTTCCACCATGTCCAAAATACACA
ATTCAAAAATTAAATACAAATGAAAAATCACAAAAAATTTTAGATTTCAT
TTTCCCAAATGGTTTAAATAAAACAACACTTTTGGGTGA----------A
AATATTGTTGCAGCTTTATTAAATGTACATAGTCAGGAAATAATAAATAC
AATTAGTCACCCATATGAGAAAAATGTAGGATTTTTAGATTCAGTTTGGT
TAAGTTCAAAAAATATTAGATCTGATGATTTTGGTTTAATTGGACAAGGA
ACAATTAAAAATGGAGTTATTTCAATTTCAAATTCATTCATTTATTTACC
AGATCCACCAATAAAATGTCCAGAACTTCCATTATTGAAGTGTGTTGAAG
GTAATTCCATGACCTATTCTCGTGATGAAAATCGTTGTCTTGTCTCACCA
AGATGTACTAAATTTGGTGTTTGCACTCTAAGTATTCCACTTTGTAATAA
AGGTTATCGTCTCGTTTCTTTCCCATCAACTGAATTAAATGGTTGTCCAA
AATTCTTCTGTGATCCAGAATTTGTTAATAAAACTCATAAATAAATACAC
TACCATTATTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gap gap included
Contig length 829
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 5004787
End point 5005590
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U09415
List of clone(s) 

est1=SSH476F,1,340
est2=SSH476Z,341,831
Translated Amino Acid sequence 
ffflffi*illlkl*n*YIIIIITIIIKIIKIMIKNYKLLLFTTFTLFFITFVSGSSILK
ANFYYKVDWENVQCFVPPCPKYTIQKLNTNEKSQKILDFIFPNGLNKTTLLG---

---NIVAALLNVHSQEIINTISHPYEKNVGFLDSVWLSSKNIRSDDFGLIGQGTIKNGVI
SISNSFIYLPDPPIKCPELPLLKCVEGNSMTYSRDENRCLVSPRCTKFGVCTLSIPLCNK
GYRLVSFPSTELNGCPKFFCDPEFVNKTHK*ihyhyskkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ffffifylnfiikiiklvynnnnnnnn*nn*nnd*kl*itfiynihfifyyickw**yfk
sklll*s*lgkcsmfrstmskihnskikyk*kitknfrfhfpkwfk*nntfg*---

---kyccsfikct*sgnnkyn*spi*ekcrifrfslvkfkky*i**fwfnwtrnn*kwsy
fnfkfihlftrstnkmsrtsiievc*r*fhdlfs**kslscltkmy*iwclhskystl**
rlssrffpin*ikwlskill*sric**ns*intlplfqkkkkkkkk

Frame B:
ffflffi*illlkl*n*YIIIIITIIIKIIKIMIKNYKLLLFTTFTLFFITFVSGSSILK
ANFYYKVDWENVQCFVPPCPKYTIQKLNTNEKSQKILDFIFPNGLNKTTLLG---

---NIVAALLNVHSQEIINTISHPYEKNVGFLDSVWLSSKNIRSDDFGLIGQGTIKNGVI
SISNSFIYLPDPPIKCPELPLLKCVEGNSMTYSRDENRCLVSPRCTKFGVCTLSIPLCNK
GYRLVSFPSTELNGCPKFFCDPEFVNKTHK*ihyhyskkkkkkkkk

Frame C:
fffyflfefyy*nykisi*****q**lk*lk**lkiinyfylqhslyfllhl*vvvvf*k
qtfiikligkmfnvsfhhvqntqfkn*iqmknhkkf*isfsqmv*ikqhfwv---

---illqly*myivrk**iqlvthmrkm*df*iqfg*vqkildlmilv*ldkeqlkmelf
qfqihsfiyqihq*nvqnfhy*svlkvip*pilvmkivvlshqdvlnlvfal*vfhfvik
vivsflshqln*mvvqnssviqnlliklinkyttiipkkkkkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U09415-1 (Contig-U09415-1Q)
/CSM_Contig/Contig-U09415-1Q.Seq.d
         (839 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09415-1 (Contig-U09415-1Q) /CSM_Contig/Conti...   979  0.0
Contig-U04033-1 (Contig-U04033-1Q) /CSM_Contig/Conti...    36  0.059
Contig-U00222-1 (Contig-U00222-1Q) /CSM_Contig/Conti...    36  0.059
Contig-U13945-1 (Contig-U13945-1Q) /CSM_Contig/Conti...    34  0.23
Contig-U12332-1 (Contig-U12332-1Q) /CSM_Contig/Conti...    34  0.23
Contig-U11746-1 (Contig-U11746-1Q) /CSM_Contig/Conti...    34  0.23
Contig-U10908-1 (Contig-U10908-1Q) /CSM_Contig/Conti...    34  0.23
Contig-U10770-1 (Contig-U10770-1Q) /CSM_Contig/Conti...    34  0.23
Contig-U10496-1 (Contig-U10496-1Q) /CSM_Contig/Conti...    34  0.23
Contig-U09228-1 (Contig-U09228-1Q) /CSM_Contig/Conti...    34  0.23

>Contig-U09415-1 (Contig-U09415-1Q) /CSM_Contig/Contig-U09415-1Q.Seq.d
          Length = 839

 Score =  979 bits (494), Expect = 0.0
 Identities = 524/524 (100%)
 Strand = Plus / Plus

                                                                       
Query: 289 tttagatttcattttcccaaatggtttaaataaaacaacacttttgggtgannnnnnnnn 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tttagatttcattttcccaaatggtttaaataaaacaacacttttgggtgannnnnnnnn 348

                                                                       
Query: 349 naaatattgttgcagctttattaaatgtacatagtcaggaaataataaatacaattagtc 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 naaatattgttgcagctttattaaatgtacatagtcaggaaataataaatacaattagtc 408

                                                                       
Query: 409 acccatatgagaaaaatgtaggatttttagattcagtttggttaagttcaaaaaatatta 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 acccatatgagaaaaatgtaggatttttagattcagtttggttaagttcaaaaaatatta 468

                                                                       
Query: 469 gatctgatgattttggtttaattggacaaggaacaattaaaaatggagttatttcaattt 528
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gatctgatgattttggtttaattggacaaggaacaattaaaaatggagttatttcaattt 528

                                                                       
Query: 529 caaattcattcatttatttaccagatccaccaataaaatgtccagaacttccattattga 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 caaattcattcatttatttaccagatccaccaataaaatgtccagaacttccattattga 588

                                                                       
Query: 589 agtgtgttgaaggtaattccatgacctattctcgtgatgaaaatcgttgtcttgtctcac 648
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 agtgtgttgaaggtaattccatgacctattctcgtgatgaaaatcgttgtcttgtctcac 648

                                                                       
Query: 649 caagatgtactaaatttggtgtttgcactctaagtattccactttgtaataaaggttatc 708
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 caagatgtactaaatttggtgtttgcactctaagtattccactttgtaataaaggttatc 708

                                                                       
Query: 709 gtctcgtttctttcccatcaactgaattaaatggttgtccaaaattcttctgtgatccag 768
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gtctcgtttctttcccatcaactgaattaaatggttgtccaaaattcttctgtgatccag 768

                                                       
Query: 769 aatttgttaataaaactcataaataaatacactaccattattcc 812
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 aatttgttaataaaactcataaataaatacactaccattattcc 812


 Score =  276 bits (139), Expect = 4e-74
 Identities = 139/139 (100%)
 Strand = Plus / Plus

                                                                       
Query: 115 attacttttatttacaacattcactttattttttattacatttgtaagtggtagtagtat 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 attacttttatttacaacattcactttattttttattacatttgtaagtggtagtagtat 174

                                                                       
Query: 175 tttaaaagcaaacttttattataaagttgattgggaaaatgttcaatgtttcgttccacc 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 tttaaaagcaaacttttattataaagttgattgggaaaatgttcaatgtttcgttccacc 234

                              
Query: 235 atgtccaaaatacacaatt 253
           |||||||||||||||||||
Sbjct: 235 atgtccaaaatacacaatt 253


>Contig-U04033-1 (Contig-U04033-1Q) /CSM_Contig/Contig-U04033-1Q.Seq.d
          Length = 668

 Score = 36.2 bits (18), Expect = 0.059
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 759 tgtgatccagaatttgtt 776
           ||||||||||||||||||
Sbjct: 295 tgtgatccagaatttgtt 312


>Contig-U00222-1 (Contig-U00222-1Q) /CSM_Contig/Contig-U00222-1Q.Seq.d
          Length = 1286

 Score = 36.2 bits (18), Expect = 0.059
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 521 ttcaatttcaaattcatt 538
           ||||||||||||||||||
Sbjct: 91  ttcaatttcaaattcatt 108


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,812
Number of Sequences: 6905
Number of extensions: 14812
Number of successful extensions: 1766
Number of sequences better than 10.0: 137
length of query: 839
length of database: 5,674,871
effective HSP length: 16
effective length of query: 823
effective length of database: 5,564,391
effective search space: 4579493793
effective search space used: 4579493793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.16
Homology vs DNA 
Query= Contig-U09415-1 (Contig-U09415-1Q) /CSM_Contig/Contig-U09415-1Q.Seq.d
         (839 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...   910   0.0    3
(AU038254) Dictyostelium discoideum slug cDNA, clone SSH476.      918   0.0    1
(AU073534) Dictyostelium discoideum slug cDNA, clone SSH476.      163   1e-35  1
(C90263) Dictyostelium discoideum slug cDNA, clone SSI514.         44   5e-04  2
(AU060164) Dictyostelium discoideum slug cDNA, clone SLA503.       38   0.026  2
(C89720) Dictyostelium discoideum slug cDNA, clone SSG244.         38   0.048  2
(AU052893) Dictyostelium discoideum slug cDNA, clone SLF283.       38   0.059  2
(BJ356547) Dictyostelium discoideum cDNA clone:dda60m13, 3' ...    38   0.063  2
(AU061602) Dictyostelium discoideum slug cDNA, clone SLE778.       38   0.064  2
(AU052809) Dictyostelium discoideum slug cDNA, clone SLF137.       38   0.066  2
(AU033801) Dictyostelium discoideum slug cDNA, clone SLB454.       38   0.066  2
(C92109) Dictyostelium discoideum slug cDNA, clone SSD104.         38   0.071  2
(AU052000) Dictyostelium discoideum slug cDNA, clone SSB176.       38   0.071  2
(C92509) Dictyostelium discoideum slug cDNA, clone SSE871.         38   0.071  2
(C93187) Dictyostelium discoideum slug cDNA, clone SSM753.         38   0.072  2
(C93181) Dictyostelium discoideum slug cDNA, clone SSM747.         38   0.073  2
(AU052824) Dictyostelium discoideum slug cDNA, clone SLF169.       38   0.073  2
(C93379) Dictyostelium discoideum slug cDNA, clone SSM721.         38   0.074  2
(C89857) Dictyostelium discoideum slug cDNA, clone SSG266.         38   0.074  2
(AU037575) Dictyostelium discoideum slug cDNA, clone SSD807.       38   0.075  2
(C92650) Dictyostelium discoideum slug cDNA, clone SSF685.         38   0.077  2
(AU037778) Dictyostelium discoideum slug cDNA, clone SSE282.       38   0.077  2
(C92229) Dictyostelium discoideum slug cDNA, clone SSD264.         38   0.077  2
(C24676) Dictyostelium discoideum slug cDNA, clone SL-X081.        38   0.078  2
(C93026) Dictyostelium discoideum slug cDNA, clone SSF491.         38   0.080  2
(C90602) Dictyostelium discoideum slug cDNA, clone SSI834.         38   0.080  2
(AU051975) Dictyostelium discoideum slug cDNA, clone SSC835.       38   0.081  2
(C91335) Dictyostelium discoideum slug cDNA, clone SSK489.         38   0.082  2
(C90775) Dictyostelium discoideum slug cDNA, clone SSJ133.         38   0.082  2
(C93285) Dictyostelium discoideum slug cDNA, clone SSM524.         38   0.083  2
(C93710) Dictyostelium discoideum slug cDNA, clone SSL633.         38   0.083  2
(C90279) Dictyostelium discoideum slug cDNA, clone SSI612.         38   0.083  2
(C90741) Dictyostelium discoideum slug cDNA, clone SSJ893.         38   0.083  2
(C92614) Dictyostelium discoideum slug cDNA, clone SSF318.         38   0.083  2
(AU037935) Dictyostelium discoideum slug cDNA, clone SSE470.       38   0.084  2
(AU034347) Dictyostelium discoideum slug cDNA, clone SLC727.       38   0.084  2
(AU039022) Dictyostelium discoideum slug cDNA, clone SSM285.       38   0.084  2
(AU038984) Dictyostelium discoideum slug cDNA, clone SSM240.       38   0.084  2
(AU039119) Dictyostelium discoideum slug cDNA, clone SSM411.       38   0.085  2
(AU051979) Dictyostelium discoideum slug cDNA, clone SSC839.       38   0.086  2
(C90045) Dictyostelium discoideum slug cDNA, clone SSG136.         38   0.087  2
(AU267909) Dictyostelium discoideum vegetative cDNA clone:VS...    38   0.088  2
(C92441) Dictyostelium discoideum slug cDNA, clone SSE548.         38   0.088  2
(AU034814) Dictyostelium discoideum slug cDNA, clone SLE537.       38   0.089  2
(C89617) Dictyostelium discoideum slug cDNA, clone SSA321.         38   0.089  2
(C89699) Dictyostelium discoideum slug cDNA, clone SSG158.         38   0.090  2
(C92385) Dictyostelium discoideum slug cDNA, clone SSE726.         38   0.091  2
(C90356) Dictyostelium discoideum slug cDNA, clone SSI294.         38   0.091  2
(C90847) Dictyostelium discoideum slug cDNA, clone SSJ224.         38   0.092  2
(C94199) Dictyostelium discoideum slug cDNA, clone SSK528.         38   0.093  2
(C91564) Dictyostelium discoideum slug cDNA, clone SSK447.         38   0.094  2
(C91939) Dictyostelium discoideum slug cDNA, clone SSC502.         38   0.095  2
(AM471544) Vitis vinifera contig VV78X211204.6, whole genome...    44   0.18   3
(AC018601) Homo sapiens clone RP11-28G15, LOW-PASS SEQUENCE ...    44   0.29   3
(C93804) Dictyostelium discoideum slug cDNA, clone SSL737.         36   0.39   2
(BX470236) Zebrafish DNA sequence from clone DKEY-99O1 in li...    48   0.54   1
(CT485786) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.54   1
(CR956435) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.54   1
(BX293561) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.54   1
(AL844218) Mouse DNA sequence from clone RP23-409B1 on chrom...    36   0.75   4
(AL161432) Human DNA sequence from clone RP11-569I20 on chro...    34   0.83   5
(AC230898) Bos taurus clone CH240-496J7, WORKING DRAFT SEQUE...    36   1.1    2
(AC162838) Bos taurus clone CH240-123G22, WORKING DRAFT SEQU...    36   1.1    2
(AC216450) Populus trichocarpa clone POP008-B21, complete se...    34   1.4    6
(BZ832320) CH240_285O24.TV CHORI-240 Bos taurus genomic clon...    36   1.5    2
(CR626890) Zebrafish DNA sequence from clone DKEY-83J7 in li...    46   2.1    1
(BX324206) Zebrafish DNA sequence from clone CH211-66O10 in ...    46   2.1    1
(BX324151) Zebrafish DNA sequence from clone CH211-62C19 in ...    46   2.1    1
(BN000002) TPA: Homo sapiens complete interleukin-1 gene clu...    46   2.1    1
(G02591) human STS WI-4848, sequence tagged site.                  46   2.1    1
(AM447829) Vitis vinifera, whole genome shotgun sequence, co...    46   2.1    1
(AM443772) Vitis vinifera contig VV78X204692.9, whole genome...    46   2.1    1
(AM443682) Vitis vinifera contig VV78X076908.3, whole genome...    46   2.1    1
(AM427681) Vitis vinifera contig VV78X005481.5, whole genome...    46   2.1    1
(AC103719) Homo sapiens chromosome 8, clone RP11-421P23, com...    46   2.1    1
(AC079922) Homo sapiens BAC clone RP11-368A17 from 2, comple...    46   2.1    1
(AC087221) Homo sapiens chromosome 8 clone RP11-712I15 map 8...    46   2.1    1
(AC080187) Homo sapiens chromosome 2 clone RP11-554I7, WORKI...    46   2.1    1
(AC069005) Homo sapiens chromosome 8 clone RP11-712I15, WORK...    46   2.1    1
(AC067802) Homo sapiens chromosome 2 clone RP11-434I13 map 2...    46   2.1    1
(ER350580) 1092346004422 Global-Ocean-Sampling_GS-34-01-01-1...    46   2.1    1
(ER334677) 1092344293709 Global-Ocean-Sampling_GS-34-01-01-1...    46   2.1    1
(CZ636667) OM__Ba0180G16.f OM__Ba Oryza minuta genomic clone...    46   2.1    1
(CZ597770) OM__Ba0042E05.r OM__Ba Oryza minuta genomic clone...    46   2.1    1
(EB490706) 1099341376591 12-DrosW-norm-1P5Kb Drosophila will...    46   2.1    1
(C89945) Dictyostelium discoideum slug cDNA, clone SSG675.         36   3.3    2
(AC026992) Homo sapiens chromosome 15, clone RP11-352D13, co...    32   4.1    2
(AC026512) Homo sapiens chromosome 15, clone RP11-375D9, com...    32   4.2    2
(AC129794) Rattus norvegicus clone CH230-360A23, *** SEQUENC...    44   4.2    3
(AU037633) Dictyostelium discoideum slug cDNA, clone SSE110.       38   4.2    2
(AC127656) Rattus norvegicus clone CH230-110P13, *** SEQUENC...    44   4.4    4
(AC016391) Homo sapiens chromosome 2 clone RP11-30J9 map 2, ...    44   4.7    5
(ER965406) SOOAJ69JR LargeInsertSoybeanGenLibBuild4 Glycine ...    36   5.2    2
(DU524488) 1098609880925 CHORI-243 Ovis aries genomic clone ...    38   5.3    2
(CQ518188) Sequence 50055 from Patent WO0160860.                   32   5.5    2
(AM478575) Vitis vinifera, whole genome shotgun sequence, co...    44   5.7    2
(CR376756) Zebrafish DNA sequence from clone CH211-87A15 in ...    34   6.1    6
(EJ412954) 1093012161767 Global-Ocean-Sampling_GS-28-01-01-1...    36   6.1    2
(AL935302) Zebrafish DNA sequence from clone DKEY-13N1 in li...    32   6.2    6
(EK243798) 1095460245012 Global-Ocean-Sampling_GS-31-01-01-1...    34   6.3    3

>(AC116305) Dictyostelium discoideum chromosome 2 map 1005175-1418323
              strain AX4, complete sequence.
          Length = 413138

 Score =  910 bits (459), Expect(3) = 0.0
 Identities = 462/463 (99%)
 Strand = Plus / Minus


Query: 350    aaatattgttgcagctttattaaatgtacatagtcaggaaataataaatacaattagtca 409
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315730 aaatattgttgcagctttattaaatgtacatagtcaggaaataataaatacaattagtca 315671


Query: 410    cccatatgagaaaaatgtaggatttttagattcagtttggttaagttcaaaaaatattag 469
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315670 accatatgagaaaaatgtaggatttttagattcagtttggttaagttcaaaaaatattag 315611


Query: 470    atctgatgattttggtttaattggacaaggaacaattaaaaatggagttatttcaatttc 529
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315610 atctgatgattttggtttaattggacaaggaacaattaaaaatggagttatttcaatttc 315551


Query: 530    aaattcattcatttatttaccagatccaccaataaaatgtccagaacttccattattgaa 589
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315550 aaattcattcatttatttaccagatccaccaataaaatgtccagaacttccattattgaa 315491


Query: 590    gtgtgttgaaggtaattccatgacctattctcgtgatgaaaatcgttgtcttgtctcacc 649
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315490 gtgtgttgaaggtaattccatgacctattctcgtgatgaaaatcgttgtcttgtctcacc 315431


Query: 650    aagatgtactaaatttggtgtttgcactctaagtattccactttgtaataaaggttatcg 709
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315430 aagatgtactaaatttggtgtttgcactctaagtattccactttgtaataaaggttatcg 315371


Query: 710    tctcgtttctttcccatcaactgaattaaatggttgtccaaaattcttctgtgatccaga 769
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315370 tctcgtttctttcccatcaactgaattaaatggttgtccaaaattcttctgtgatccaga 315311


Query: 770    atttgttaataaaactcataaataaatacactaccattattcc 812
              |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315310 atttgttaataaaactcataaataaatacactaccattattcc 315268

 Score =  163 bits (82), Expect(3) = 0.0
 Identities = 82/82 (100%)
 Strand = Plus / Minus


Query: 158    gtaagtggtagtagtattttaaaagcaaacttttattataaagttgattgggaaaatgtt 217
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316192 gtaagtggtagtagtattttaaaagcaaacttttattataaagttgattgggaaaatgtt 316133


Query: 218    caatgtttcgttccaccatgtc 239
              ||||||||||||||||||||||
Sbjct: 316132 caatgtttcgttccaccatgtc 316111

 Score = 32.2 bits (16), Expect(3) = 0.0
 Identities = 16/16 (100%)
 Strand = Plus / Minus


Query: 324    caacacttttgggtga 339
              ||||||||||||||||
Sbjct: 316026 caacacttttgggtga 316011

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 771,567,860
Number of extensions: 51127338
Number of successful extensions: 4149369
Number of sequences better than 10.0: 187
Length of query: 839
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 815
Effective length of database: 97,308,875,965
Effective search space: 79306733911475
Effective search space used: 79306733911475
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.25
Homology vs Protein 
Query= Contig-U09415-1 (Contig-U09415-1Q) /CSM_Contig/Contig-U09415-1Q.Seq.d
         (839 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_114(AC116305|pid:none) Dictyostelium discoideum chromos...   307   3e-82
AC116305_115(AC116305|pid:none) Dictyostelium discoideum chromos...   190   4e-47
AC116305_112(AC116305|pid:none) Dictyostelium discoideum chromos...   128   2e-28
AC116921_3(AC116921|pid:none) Dictyostelium discoideum chromosom...    92   2e-17
BC101017_1(BC101017|pid:none) Homo sapiens chromosome 12 open re...    47   0.001
BA000039_1080(BA000039|pid:none) Thermosynechococcus elongatus B...    38   0.47
AC004393_10(AC004393|pid:none) Arabidopsis thaliana chromosome 1...    35   2.3
BT023457_1(BT023457|pid:none) Arabidopsis thaliana At1g67440 gen...    35   2.3
AY509881_1(AY509881|pid:none) Equus caballus P-selectin mRNA, co...    35   3.0
CU928167_266(CU928167|pid:none) Kluyveromyces thermotolerans str...    34   6.8
CP000230_2170(CP000230|pid:none) Rhodospirillum rubrum ATCC 1117...    33   8.8

>AC116305_114(AC116305|pid:none) Dictyostelium discoideum chromosome
           2 map 1005175-1418323 strain AX4, complete sequence.
          Length = 289

 Score =  307 bits (786), Expect = 3e-82
 Identities = 146/147 (99%), Positives = 146/147 (99%)
 Frame = +3

Query: 351 NIVAALLNVHSQEIINTISHPYEKNVGFLDSVWLSSKNIRSDDFGLIGQGTIKNGVISIS 530
           NIVAALLNVHSQEIINTIS PYEKNVGFLDSVWLSSKNIRSDDFGLIGQGTIKNGVISIS
Sbjct: 143 NIVAALLNVHSQEIINTISQPYEKNVGFLDSVWLSSKNIRSDDFGLIGQGTIKNGVISIS 202

Query: 531 NSFIYLPDPPIKCPELPLLKCVEGNSMTYSRDENRCLVSPRCTKFGVCTLSIPLCNKGYR 710
           NSFIYLPDPPIKCPELPLLKCVEGNSMTYSRDENRCLVSPRCTKFGVCTLSIPLCNKGYR
Sbjct: 203 NSFIYLPDPPIKCPELPLLKCVEGNSMTYSRDENRCLVSPRCTKFGVCTLSIPLCNKGYR 262

Query: 711 LVSFPSTELNGCPKFFCDPEFVNKTHK 791
           LVSFPSTELNGCPKFFCDPEFVNKTHK
Sbjct: 263 LVSFPSTELNGCPKFFCDPEFVNKTHK 289

 Score =  129 bits (324), Expect = 1e-28
 Identities = 60/60 (100%), Positives = 60/60 (100%)
 Frame = +2

Query: 158 VSGSSILKANFYYKVDWENVQCFVPPCPKYTIQKLNTNEKSQKILDFIFPNGLNKTTLLG 337
           VSGSSILKANFYYKVDWENVQCFVPPCPKYTIQKLNTNEKSQKILDFIFPNGLNKTTLLG
Sbjct: 21  VSGSSILKANFYYKVDWENVQCFVPPCPKYTIQKLNTNEKSQKILDFIFPNGLNKTTLLG 80

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,155,811,546
Number of extensions: 22756886
Number of successful extensions: 51699
Number of sequences better than 10.0: 11
Number of HSP's gapped: 51679
Number of HSP's successfully gapped: 14
Length of query: 279
Length of database: 1,040,966,779
Length adjustment: 127
Effective length of query: 152
Effective length of database: 634,022,584
Effective search space: 96371432768
Effective search space used: 96371432768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.69  gvh: 0.61  alm: 0.18  top: 0.73  tms: 0.13  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	 16.0 %: vacuolar
	 12.0 %: mitochondrial
	 12.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for Contig-U09415-1 is end
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0