NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U09412-1
Contig ID Contig-U09412-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U09412-1 (Contig-U09412-1Q) /CSM_Contig/Contig-U09412-1Q.Seq.d
ATTATCACAACTATTTTATAATAAACCAATTTTAAAGATTAAAGTCAAGA
ATACAAGCATATTACCTATTGGTGATATAATGGTACAACCAAAGTATTTA
GTGCATGAATTAACTTTGGTGTACCCTGATAATATAGTTGTAAATATATC
TGGTTTAACTTTTATTTCAGTAATACAAGTTTGTTTAAATCAAAGAAATG
GTGGTGGTGGTGGTGGTGGTGGAGGTGAAAACAATTTATCATTTAAAAAA
TGGACATTAGGTAATTCAGTTGATAGAATAAATGATGTTACTTTTTGTGG
TCCATTCTTA----------TTTAGGTCGTGTATTATTAATTGATCTTGT
AAATAGTTTAGTTGTAAAAATATGGAAAGGTTATCGTGATTGTCAATGTG
GTTTTGTAAGTGTAGTTGAAAATAATAATAATAATAATAATAACAGTGAT
AATGAAAATAATGAAAATAATGAAAATAATGAAAATAATGAAAATAATGA
AGATTTAGAAGATTTTATACCAAGAAAACTTTTAAAGAAATCTTCATCAA
CATTACAATCACGTACATATTTAGTAATTTATTTAGGTCGTAGAGGTATT
TTAGAGATTTGGGGCTTAAAACATCGTTCAAGAGAATATTTTAAAACTAT
TGGTAAAGGTTGTAAATTAATTTCAACTACAACTCCCTCAATCTTTCAAA
ATCAGTCCACATCACAAAATTTAAGAAATAGTGGTGGTGCAATTAATATA
TCTAATATCCCTCAATATAATATTAGTGAAGGTCAATCTCATTGTTTCAT
ACTTTATACTGATGGTTCAATAAAAGAAATTAAATATAATTATCAATAAT
AATAATAAATTAATTAATAAATTTAAATCAAAA
Gap gap included
Contig length 873
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 3953072
End point 3953946
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U09412
List of clone(s) 

est1=SSH428F,1,311
est2=SSH428Z,312,875
Translated Amino Acid sequence 
LSQLFYNKPILKIKVKNTSILPIGDIMVQPKYLVHELTLVYPDNIVVNISGLTFISVIQV
CLNQRNGGGGGGGGGENNLSFKKWTLGNSVDRINDVTFCGPFL---

---LGRVLLIDLVNSLVVKIWKGYRDCQCGFVSVVENNNNNNNNSDNENNENNENNENNE
NNEDLEDFIPRKLLKKSSSTLQSRTYLVIYLGRRGILEIWGLKHRSREYFKTIGKGCKLI
STTTPSIFQNQSTSQNLRNSGGAINISNIPQYNISEGQSHCFILYTDGSIKEIKYNYQ**
**in**i*ik
Translated Amino Acid sequence (All Frames) 
Frame A:
iittil**tnfkd*sqeykhityw*yngttkvfsa*infgvp**ysckyiwfnfyfsnts
lfkskkwwwwwwwwr*kqfii*kmdir*fs**nk*cyflwsil---

---frsciin*sck*fscknmerls*lsmwfckcs*k*******q***k**k**k**k**
k**rfrrfytkktfkeifinitityifsnlfrs*ryfrdlglktsfkrif*nyw*rl*in
fnynslnlsksvhitkfkk*wwcn*yi*ypsi*y**rsislfhtly*wfnkrn*i*lsii
iin*linlnq

Frame B:
LSQLFYNKPILKIKVKNTSILPIGDIMVQPKYLVHELTLVYPDNIVVNISGLTFISVIQV
CLNQRNGGGGGGGGGENNLSFKKWTLGNSVDRINDVTFCGPFL---

---LGRVLLIDLVNSLVVKIWKGYRDCQCGFVSVVENNNNNNNNSDNENNENNENNENNE
NNEDLEDFIPRKLLKKSSSTLQSRTYLVIYLGRRGILEIWGLKHRSREYFKTIGKGCKLI
STTTPSIFQNQSTSQNLRNSGGAINISNIPQYNISEGQSHCFILYTDGSIKEIKYNYQ**
**in**i*ik

Frame C:
yhnyfiinqf*rlksriqayyllvi*wynqsi*cmn*lwctlii*l*iylv*llfq*ykf
v*ikemvvvvvvvevktiyhlkngh*viqlie*mmllfvvhs---

---*vvyy*lil*iv*l*kygkvivivnvvl*v*lkiiiiiiitvimkimkimkimkimk
imki*kilyqenf*rnlhqhynhvhi**fi*vvevf*rfga*nivqenilkllvkvvn*f
qlqlpqsfkisphhki*eivvvqliylislniilvkvnlivsyfilmvq*kklniiinnn
nklinkfksk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U09412-1 (Contig-U09412-1Q)
/CSM_Contig/Contig-U09412-1Q.Seq.d
         (883 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09412-1 (Contig-U09412-1Q) /CSM_Contig/Conti...   626  e-180
Contig-U09318-1 (Contig-U09318-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U12528-1 (Contig-U12528-1Q) /CSM_Contig/Conti...    36  0.062
Contig-U10976-1 (Contig-U10976-1Q) /CSM_Contig/Conti...    36  0.062
Contig-U09034-1 (Contig-U09034-1Q) /CSM_Contig/Conti...    36  0.062
Contig-U11859-1 (Contig-U11859-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U11815-1 (Contig-U11815-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U11384-1 (Contig-U11384-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U11264-1 (Contig-U11264-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U11110-1 (Contig-U11110-1Q) /CSM_Contig/Conti...    34  0.25

>Contig-U09412-1 (Contig-U09412-1Q) /CSM_Contig/Contig-U09412-1Q.Seq.d
          Length = 883

 Score =  626 bits (316), Expect = e-180
 Identities = 316/316 (100%)
 Strand = Plus / Plus

                                                                       
Query: 502 gatttagaagattttataccaagaaaacttttaaagaaatcttcatcaacattacaatca 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gatttagaagattttataccaagaaaacttttaaagaaatcttcatcaacattacaatca 561

                                                                       
Query: 562 cgtacatatttagtaatttatttaggtcgtagaggtattttagagatttggggcttaaaa 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cgtacatatttagtaatttatttaggtcgtagaggtattttagagatttggggcttaaaa 621

                                                                       
Query: 622 catcgttcaagagaatattttaaaactattggtaaaggttgtaaattaatttcaactaca 681
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 catcgttcaagagaatattttaaaactattggtaaaggttgtaaattaatttcaactaca 681

                                                                       
Query: 682 actccctcaatctttcaaaatcagtccacatcacaaaatttaagaaatagtggtggtgca 741
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 actccctcaatctttcaaaatcagtccacatcacaaaatttaagaaatagtggtggtgca 741

                                                                       
Query: 742 attaatatatctaatatccctcaatataatattagtgaaggtcaatctcattgtttcata 801
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 attaatatatctaatatccctcaatataatattagtgaaggtcaatctcattgtttcata 801

                           
Query: 802 ctttatactgatggtt 817
           ||||||||||||||||
Sbjct: 802 ctttatactgatggtt 817


 Score =  393 bits (198), Expect = e-109
 Identities = 198/198 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attatcacaactattttataataaaccaattttaaagattaaagtcaagaatacaagcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   attatcacaactattttataataaaccaattttaaagattaaagtcaagaatacaagcat 60

                                                                       
Query: 61  attacctattggtgatataatggtacaaccaaagtatttagtgcatgaattaactttggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  attacctattggtgatataatggtacaaccaaagtatttagtgcatgaattaactttggt 120

                                                                       
Query: 121 gtaccctgataatatagttgtaaatatatctggtttaacttttatttcagtaatacaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtaccctgataatatagttgtaaatatatctggtttaacttttatttcagtaatacaagt 180

                             
Query: 181 ttgtttaaatcaaagaaa 198
           ||||||||||||||||||
Sbjct: 181 ttgtttaaatcaaagaaa 198


 Score =  325 bits (164), Expect = 5e-89
 Identities = 194/194 (100%)
 Strand = Plus / Plus

                                                                       
Query: 223 aggtgaaaacaatttatcatttaaaaaatggacattaggtaattcagttgatagaataaa 282
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 aggtgaaaacaatttatcatttaaaaaatggacattaggtaattcagttgatagaataaa 282

                                                                       
Query: 283 tgatgttactttttgtggtccattcttannnnnnnnnntttaggtcgtgtattattaatt 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tgatgttactttttgtggtccattcttannnnnnnnnntttaggtcgtgtattattaatt 342

                                                                       
Query: 343 gatcttgtaaatagtttagttgtaaaaatatggaaaggttatcgtgattgtcaatgtggt 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gatcttgtaaatagtttagttgtaaaaatatggaaaggttatcgtgattgtcaatgtggt 402

                         
Query: 403 tttgtaagtgtagt 416
           ||||||||||||||
Sbjct: 403 tttgtaagtgtagt 416


>Contig-U09318-1 (Contig-U09318-1Q) /CSM_Contig/Contig-U09318-1Q.Seq.d
          Length = 1951

 Score = 38.2 bits (19), Expect = 0.016
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 522  aagaaaacttttaaagaaa 540
            |||||||||||||||||||
Sbjct: 1701 aagaaaacttttaaagaaa 1719


>Contig-U12528-1 (Contig-U12528-1Q) /CSM_Contig/Contig-U12528-1Q.Seq.d
          Length = 1995

 Score = 36.2 bits (18), Expect = 0.062
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 531 tttaaagaaatcttcatc 548
           ||||||||||||||||||
Sbjct: 829 tttaaagaaatcttcatc 812


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,979
Number of Sequences: 6905
Number of extensions: 11979
Number of successful extensions: 1288
Number of sequences better than 10.0: 139
length of query: 883
length of database: 5,674,871
effective HSP length: 16
effective length of query: 867
effective length of database: 5,564,391
effective search space: 4824326997
effective search space used: 4824326997
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.16
Homology vs DNA 
Query= Contig-U09412-1 (Contig-U09412-1Q) /CSM_Contig/Contig-U09412-1Q.Seq.d
         (883 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU038217) Dictyostelium discoideum slug cDNA, clone SSH428.      628   0.0    2
(AU073516) Dictyostelium discoideum slug cDNA, clone SSH428.      392   e-109  2
(AE017199) Nanoarchaeum equitans Kin4-M, complete genome.          54   0.009  1
(AF130844) Homo sapiens ZNF127AS gene, putative 3' untransla...    44   0.17   3
(AP001819) Homo sapiens genomic DNA, chromosome 4q22-q24, cl...    48   0.57   1
(AL355798) Human DNA sequence from clone RP11-417A17 on chro...    48   0.57   1
(AC004048) Homo sapiens chromosome 4 clone B176A5 map 4q25, ...    48   0.57   1
(AC153407) Bos taurus clone CH240-19L8, WORKING DRAFT SEQUEN...    48   0.57   1
(AC079110) Homo sapiens chromosome 4 clone RP11-74N18 map 4,...    48   0.57   1
(AL591717) Human DNA sequence *** SEQUENCING IN PROGRESS ***...    48   0.57   1
(AC224762) Bos taurus clone CH240-477F7, WORKING DRAFT SEQUE...    48   0.57   1
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    34   0.93   7
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    38   1.1    10
(AC222963) Bos taurus clone CH240-433E6, WORKING DRAFT SEQUE...    44   1.1    5
(AC223984) Bos taurus clone CH240-452H9, WORKING DRAFT SEQUE...    40   1.1    3
(AF490841) Sus scrofa glutaminase mRNA, partial cds.               46   2.2    1
(AC116633) Homo sapiens BAC clone RP11-452C8 from 4, complet...    46   2.2    1
(AC136179) Rattus norvegicus clone CH230-464N16, WORKING DRA...    46   2.2    1
(AC079797) Homo sapiens chromosome RPCI-11 clone RP11-633E4,...    46   2.2    1
(AC040909) Homo sapiens chromosome 1 clone RP11-195I4 map 1,...    46   2.2    1
(CU466478) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.2    1
(AC223498) Bos taurus clone CH240-468D15, WORKING DRAFT SEQU...    46   2.2    1
(AC164219) Bos taurus clone CH240-148H7, *** SEQUENCING IN P...    46   2.2    1
(EK432197) 1095516161510 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.2    1
(CW191905) 104_614_11178744_148_36945_094 Sorghum methylatio...    46   2.2    1
(CC276999) CH261-94P8_RM1.1 CH261 Gallus gallus genomic clon...    46   2.2    1
(BW957069) Sus scrofa mRNA, clone:AMP010027H06, 5' end, expr...    46   2.2    1
(BI337017) AR085G03PBCAG03S Porcine Peripheral Blood Cell cD...    46   2.2    1
(AE017308) Mycoplasma mobile 163K complete genome.                 42   3.2    12
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s...    30   4.4    13
(BZ797265) PUGAB44TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    36   5.5    2
(EI348463) GM_WBc0095I03.f GM_WBc Glycine max genomic clone ...    34   5.8    2
(FH282406) CHO_OF4188xe20f1.ab1 CHO_OF4 Nicotiana tabacum ge...    40   6.0    2
(AC200634) Pongo abelii BAC clone CH276-201O10 from chromoso...    44   6.2    3
(BH126621) BARC-Satt446 Size-selected soybean genomic Glycin...    34   6.6    3
(CR848043) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    32   6.6    7
(EK387561) 1095469489209 Global-Ocean-Sampling_GS-31-01-01-1...    42   6.8    2
(AL935299) Zebrafish DNA sequence from clone DKEY-38M5.            44   8.8    1
(AC148985) Mus musculus BAC clone RP23-124O21 from chromosom...    44   8.8    1
(AC117257) Mus musculus BAC clone RP24-484F21 from chromosom...    44   8.8    1
(AC105906) Mus musculus chromosome 7, clone RP24-81O24, comp...    44   8.8    1
(CR759898) Human DNA sequence from clone XX-NCIH2171_7O06.         44   8.8    1
(AF137396) Homo sapiens ubiquilin 3, HOR 5'Beta14, HOR5'Beta...    44   8.8    1
(AC126407) Homo sapiens chromosome 15, clone RP11-73C9, comp...    44   8.8    1
(AC104389) Homo sapiens chromosome 11, clone CTD-2643I7, com...    44   8.8    1
(AC100754) Homo sapiens chromosome 15, clone RP11-262I11, co...    44   8.8    1
(AC025459) Homo sapiens chromosome 5 clone CTD-2218G20, comp...    44   8.8    1
(AC021006) Homo sapiens chromosome 11, clone RP11-124G5, com...    44   8.8    1
(AC161752) Mus musculus chromosome 7 clone RP24-491C12, WORK...    44   8.8    1
(AC149438) Otolemur garnettii clone CH256-12N24, WORKING DRA...    44   8.8    1
(AC136878) Pan troglodytes clone RP43-109L7, WORKING DRAFT S...    44   8.8    1
(AC135174) Homo sapiens chromosome 15 clone RP11-1152K1 map ...    44   8.8    1
(AC126922) Pan troglodytes clone RP43-60I5, WORKING DRAFT SE...    44   8.8    1
(AC123766) Homo sapiens chromosome 15 clone RP11-1139F16 map...    44   8.8    1
(AC104375) Homo sapiens chromosome 11 clone CTD-2013D1 map 1...    44   8.8    1
(AC103321) Rattus norvegicus clone CH230-44O6, *** SEQUENCIN...    44   8.8    1
(AC099388) Rattus norvegicus clone CH230-45J10, *** SEQUENCI...    44   8.8    1
(AC095526) Rattus norvegicus clone CH230-8C11, *** SEQUENCIN...    44   8.8    1
(CU074413) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.8    1
(CR847889) Mouse DNA sequence *** SEQUENCING CANCELLED *** f...    44   8.8    1
(AC220766) Bos taurus clone CH240-347I3, WORKING DRAFT SEQUE...    44   8.8    1
(AC202237) Saimiri boliviensis boliviensis clone CH254-420N9...    44   8.8    1
(AC192911) Saimiri boliviensis boliviensis clone CH254-434K6...    44   8.8    1
(AC184627) Strongylocentrotus purpuratus clone R3-3005G9, WO...    44   8.8    1
(AC183721) Callicebus moloch clone LB5-364A15, WORKING DRAFT...    44   8.8    1
(AC176928) Strongylocentrotus purpuratus clone R3-33J19, WOR...    44   8.8    1
(AC172721) Callicebus moloch clone LB5-233H24, WORKING DRAFT...    44   8.8    1
(DQ847949) Cherax quadricarinatus clone h12_D7 mRNA sequence.      44   8.8    1
(FH044024) CHO_OF3183xl15r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   8.8    1
(FH043988) CHO_OF3183xl15f1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   8.8    1
(ET768505) CHO_OF279xp14f1.ab1 CHO_OF Nicotiana tabacum geno...    44   8.8    1
(ET757218) CHO_OF271xf05f1.ab1 CHO_OF Nicotiana tabacum geno...    44   8.8    1
(EK435617) 1095521031339 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.8    1
(EJ982765) 1093022165196 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.8    1
(EJ843052) 1093017842741 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.8    1
(EJ493284) 1095403556287 Global-Ocean-Sampling_GS-28-01-01-1...    44   8.8    1
(EJ471119) 1095403411465 Global-Ocean-Sampling_GS-28-01-01-1...    44   8.8    1
(CT526219) A BAC library has been constructed from cultivar ...    44   8.8    1
(CV022815) Rasgscb0402 Salivary Gland 4th instar 3rd period ...    44   8.8    1
(CK815350) Rasgsc6762 Salivary Gland 4th instar 3rd period (...    44   8.8    1
(FK871470) EST_crog_evp_909774 crog_evp Caligus rogercressey...    44   8.8    1
(FC117133) 1106878556539 BABEVPN-C-01-1-7KB Papio anubis cDN...    44   8.8    1
(CP000612) Desulfotomaculum reducens MI-1, complete genome.        44   8.8    1
(CP000485) Bacillus thuringiensis str. Al Hakam, complete ge...    44   8.8    1
(CP000001) Bacillus cereus E33L, complete genome.                  44   8.8    1
(AE017334) Bacillus anthracis str. 'Ames Ancestor', complete...    44   8.8    1
(AE017225) Bacillus anthracis str. Sterne, complete genome.        44   8.8    1
(AE016879) Bacillus anthracis str. Ames, complete genome.          44   8.8    1
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    34   10.0   8

>(AU038217) Dictyostelium discoideum slug cDNA, clone SSH428.
          Length = 564

 Score =  628 bits (317), Expect(2) = 0.0
 Identities = 317/317 (100%)
 Strand = Plus / Plus


Query: 502 gatttagaagattttataccaagaaaacttttaaagaaatcttcatcaacattacaatca 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gatttagaagattttataccaagaaaacttttaaagaaatcttcatcaacattacaatca 241


Query: 562 cgtacatatttagtaatttatttaggtcgtagaggtattttagagatttggggcttaaaa 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cgtacatatttagtaatttatttaggtcgtagaggtattttagagatttggggcttaaaa 301


Query: 622 catcgttcaagagaatattttaaaactattggtaaaggttgtaaattaatttcaactaca 681
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 catcgttcaagagaatattttaaaactattggtaaaggttgtaaattaatttcaactaca 361


Query: 682 actccctcaatctttcaaaatcagtccacatcacaaaatttaagaaatagtggtggtgca 741
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 actccctcaatctttcaaaatcagtccacatcacaaaatttaagaaatagtggtggtgca 421


Query: 742 attaatatatctaatatccctcaatataatattagtgaaggtcaatctcattgtttcata 801
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 attaatatatctaatatccctcaatataatattagtgaaggtcaatctcattgtttcata 481


Query: 802 ctttatactgatggttc 818
           |||||||||||||||||
Sbjct: 482 ctttatactgatggttc 498

 Score =  194 bits (98), Expect(2) = 0.0
 Identities = 98/98 (100%)
 Strand = Plus / Plus


Query: 321 tttaggtcgtgtattattaattgatcttgtaaatagtttagttgtaaaaatatggaaagg 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tttaggtcgtgtattattaattgatcttgtaaatagtttagttgtaaaaatatggaaagg 60


Query: 381 ttatcgtgattgtcaatgtggttttgtaagtgtagttg 418
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttatcgtgattgtcaatgtggttttgtaagtgtagttg 98

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 916,720,415
Number of extensions: 56656937
Number of successful extensions: 4609741
Number of sequences better than 10.0: 90
Length of query: 883
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 859
Effective length of database: 97,308,875,965
Effective search space: 83588324453935
Effective search space used: 83588324453935
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.25
Homology vs Protein 
Query= Contig-U09412-1 (Contig-U09412-1Q) /CSM_Contig/Contig-U09412-1Q.Seq.d
         (883 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q5U1Z0) RecName: Full=Rab3 GTPase-activating protein non-cataly...    61   6e-08
BC057872_1(BC057872|pid:none) Mus musculus RAB3 GTPase activatin...    61   6e-08
BC129145_1(BC129145|pid:none) Danio rerio RAB3 GTPase activating...    60   1e-07
AF004828_1(AF004828|pid:none) Homo sapiens rab3-GAP regulatory d...    60   1e-07
AF145682_1(AF145682|pid:none) Drosophila melanogaster clone LD23...    51   6e-05
AE014134_2235(AE014134|pid:none) Drosophila melanogaster chromos...    51   6e-05
(Q9VKB9) RecName: Full=Rab3 GTPase-activating protein regulatory...    51   6e-05
BT039609_1(BT039609|pid:none) Zea mays full-length cDNA clone ZM...    40   0.10
EU963567_1(EU963567|pid:none) Zea mays clone 264124 unknown mRNA.      40   0.10
AP008981_1870(AP008981|pid:none) Orientia tsutsugamushi str. Ike...    34   7.4
CP000232_1762(CP000232|pid:none) Moorella thermoacetica ATCC 390...    33   9.7

>(Q5U1Z0) RecName: Full=Rab3 GTPase-activating protein non-catalytic
           subunit; AltName: Full=Rab3 GTPase-activating protein
           150 kDa subunit; AltName: Full=Rab3-GAP p150;
           Short=RAB3-GAP150; AltName: Full=Rab3-GAP regulatory
           subunit;
          Length = 1386

 Score = 60.8 bits (146), Expect = 6e-08
 Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 4/136 (2%)
 Frame = +1

Query: 325 GRVLLIDLVNSLVVKIWKGYRDCQCGFVSVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXD 504
           GRV+L+D+   + +++WKGYRD Q G++ +V                            D
Sbjct: 404 GRVILLDVARGIAIRMWKGYRDAQIGWIQIV---------------------------ED 436

Query: 505 LEDFIPRXXXXXXXXXXQSRT----YLVIYLGRRGILEIWGLKHRSREYFKTIGKGCKLI 672
           L + +P           Q  +    +LVIY  RRGILE+W  +   R     +GK C+L+
Sbjct: 437 LHERVPEKGDFSPFGNTQGPSRVAQFLVIYAPRRGILEVWSTQQGPRVGAFNVGKHCRLL 496

Query: 673 STTTPSIFQNQSTSQN 720
                 +  N  TSQ+
Sbjct: 497 YPGYKIMGLNNVTSQS 512

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 994,545,353
Number of extensions: 15403357
Number of successful extensions: 37744
Number of sequences better than 10.0: 11
Number of HSP's gapped: 37740
Number of HSP's successfully gapped: 18
Length of query: 294
Length of database: 1,040,966,779
Length adjustment: 127
Effective length of query: 167
Effective length of database: 634,022,584
Effective search space: 105881771528
Effective search space used: 105881771528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.60  gvh: 0.37  alm: 0.29  top: 0.57  tms: 0.13  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	 16.0 %: nuclear
	 12.0 %: vacuolar
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for Contig-U09412-1 is end
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0