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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U09385-1
Contig ID Contig-U09385-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U09385-1 (Contig-U09385-1Q) /CSM_Contig/Contig-U09385-1Q.Seq.d
ATAATAATATTTTTTTTTTTAAATTTAATATTAAATAATAATAAAAACAA
TAATAATAAAATTAAAATTATGTTATGCTTTAATGATTTTAATTTTCCAA
AGGAATGGGAAGTAGTACCAAATTCATTCAAATATATTGATATAGTAATA
AAAGAAATAATTGGTTTTGGTTTAATCAAAGAAAATGATCAAGAATTAAA
AATGATTGTAAATCAAGCCATTTCAATTGCTGCTTATTTTTGGCCATATG
CAAATGAAGAACAAATGGTAATGGGAGGGTCAGTACTGTGTTGGTGTGTC
TTATTTGATGATCCACTAGATACAAATAAATTAGATGAAAAAAAAGGTTT
AGAAATTGTTAGTAGAACAGAGAAATTACTTTTAACTAGAACTTTACCAA
ATAACCCCACAAATCTTGAAAAGTATGGATTTACAATTTTTGAAAAATGT
TTAAAATATTGTGGAACCAATACTCATATGTATGACATGTTAATTAAATT
AACAGTTCAGTGGATTTATTCTATAATTCCATTCAATAAATTAAAT----
------TAAATTCAAATAATAAAGTTGATTTGATAGTTTTGGCAAATCCT
TTATATCAGAAATTGGTTGATTTAAGTTCATTAAATATTTCGTTTGTTAA
TGATGCAGCAAGTTTTTGTAAAGAAATAAAAGATGGCGGTAGTGATCATA
ATTTATTTATTATTTTAATGAAAAGATTAGGTGGTATTGAATTTATTAAA
GAAGCATATAAACAATTAACAGATTTATCAAATGGATACATAGATGAATT
TTGTTATTATGAGAAATTATTACTTTCAAGTCTTTCAAAACAACAACAAA
ATGAAATTCAAATCTTTATTGACCACCTAAAATATTTAATGAAAGGAAAT
CAAATATGGTCAACCAAAACAATAAGATATGCAACGGAAGATCATCCAAT
TATTCAATTAAGAAATTCAACTAATAAATTAATTGAAAATAATATTAATA
TGGATAAAGTATCATTAACAAATAAAAACTATATTTAATATATTTATATT
ATTATATTTAAAAAAAA
Gap gap included
Contig length 1057
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 4537018
End point 4538076
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U09385
List of clone(s) 

est1=SSF738F,1,547
est2=SSF738Z,548,1059
Translated Amino Acid sequence 
IIIFFFLNLILNNNKNNNNKIKIMLCFNDFNFPKEWEVVPNSFKYIDIVIKEIIGFGLIK
ENDQELKMIVNQAISIAAYFWPYANEEQMVMGGSVLCWCVLFDDPLDTNKLDEKKGLEIV
SRTEKLLLTRTLPNNPTNLEKYGFTIFEKCLKYCGTNTHMYDMLIKLTVQWIYSIIPFNK
LN---

---NSNNKVDLIVLANPLYQKLVDLSSLNISFVNDAASFCKEIKDGGSDHNLFIILMKRL
GGIEFIKEAYKQLTDLSNGYIDEFCYYEKLLLSSLSKQQQNEIQIFIDHLKYLMKGNQIW
STKTIRYATEDHPIIQLRNSTNKLIENNINMDKVSLTNKNYI*yiyiiifkk
Translated Amino Acid sequence (All Frames) 
Frame A:
IIIFFFLNLILNNNKNNNNKIKIMLCFNDFNFPKEWEVVPNSFKYIDIVIKEIIGFGLIK
ENDQELKMIVNQAISIAAYFWPYANEEQMVMGGSVLCWCVLFDDPLDTNKLDEKKGLEIV
SRTEKLLLTRTLPNNPTNLEKYGFTIFEKCLKYCGTNTHMYDMLIKLTVQWIYSIIPFNK
LN---

---*iqiikli**fwqilyirnwli*vh*ifrllmmqqvfvkk*kmavviiiyllf**kd
*vvlnllkkhinn*qiyqmdt*mnfvimrnyyfqvfqnnnkmkfkslltt*ni**keiky
gqpkq*dmqrkiiqlfn*eiqlin*lkiiliwikyh*qiktifnifillylkk

Frame B:
**yfff*i*y*iiiktiiiklklcyalmilifqrngk*yqihsnili***kk*lvlv*sk
kmikn*k*l*ikpfqlllifghmqmknkw*wegqycvgvsylmih*iqin*mkkkv*kll
veqrnyf*lelyqitpqilksmdlqflknv*nivepilicmtc*ln*qfsgfil*fhsin
*---

---kfk**s*fdsfgksfiseig*fkfikyfvc**cskfl*rnkrwr**s*fiyyfneki
rwy*iy*rsi*tinrfikwihr*illl*eiitfksfktttk*nsnly*ppkifnerksnm
vnqnnkicngrssnysikkfn**in*k*y*yg*siink*klyliylyyyi*kk

Frame C:
nnifffkfnik***kq***n*nyvml**f*fskgmgsstkfiqiy*ysnkrnnwfwfnqr
k*srikndcksshfncclflaick*rtngngrvstvlvcli**stryk*ir*kkrfrnc*
*nreitfn*nftk*phks*kvwiynf*kmfkilwnqysyv*hvn*inssvdlfynsiq*i
k---

---NSNNKVDLIVLANPLYQKLVDLSSLNISFVNDAASFCKEIKDGGSDHNLFIILMKRL
GGIEFIKEAYKQLTDLSNGYIDEFCYYEKLLLSSLSKQQQNEIQIFIDHLKYLMKGNQIW
STKTIRYATEDHPIIQLRNSTNKLIENNINMDKVSLTNKNYI*yiyiiifkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U09385-1 (Contig-U09385-1Q)
/CSM_Contig/Contig-U09385-1Q.Seq.d
         (1067 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09385-1 (Contig-U09385-1Q) /CSM_Contig/Conti...  1857  0.0
Contig-U12210-1 (Contig-U12210-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U04364-1 (Contig-U04364-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U14641-1 (Contig-U14641-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U11862-1 (Contig-U11862-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U09777-1 (Contig-U09777-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U09703-1 (Contig-U09703-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U04369-1 (Contig-U04369-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U01911-1 (Contig-U01911-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U14757-1 (Contig-U14757-1Q) /CSM_Contig/Conti...    36  0.075

>Contig-U09385-1 (Contig-U09385-1Q) /CSM_Contig/Contig-U09385-1Q.Seq.d
          Length = 1067

 Score = 1857 bits (937), Expect = 0.0
 Identities = 983/991 (99%)
 Strand = Plus / Plus

                                                                        
Query: 69   tatgttatgctttaatgattttaattttccaaaggaatgggaagtagtaccaaattcatt 128
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69   tatgttatgctttaatgattttaattttccaaaggaatgggaagtagtaccaaattcatt 128

                                                                        
Query: 129  caaatatattgatatagtaataaaagaaataattggttttggtttaatcaaagaaaatga 188
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129  caaatatattgatatagtaataaaagaaataattggttttggtttaatcaaagaaaatga 188

                                                                        
Query: 189  tcaagaattaaaaatgattgtaaatcaagccatttcaattgctgcttatttttggccata 248
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189  tcaagaattaaaaatgattgtaaatcaagccatttcaattgctgcttatttttggccata 248

                                                                        
Query: 249  tgcaaatgaagaacaaatggtaatgggagggtcagtactgtgttggtgtgtcttatttga 308
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249  tgcaaatgaagaacaaatggtaatgggagggtcagtactgtgttggtgtgtcttatttga 308

                                                                        
Query: 309  tgatccactagatacaaataaattagatgnnnnnnnnggtttagaaattgttagtagaac 368
            |||||||||||||||||||||||||||||        |||||||||||||||||||||||
Sbjct: 309  tgatccactagatacaaataaattagatgaaaaaaaaggtttagaaattgttagtagaac 368

                                                                        
Query: 369  agagaaattacttttaactagaactttaccaaataaccccacaaatcttgaaaagtatgg 428
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369  agagaaattacttttaactagaactttaccaaataaccccacaaatcttgaaaagtatgg 428

                                                                        
Query: 429  atttacaatttttgaaaaatgtttaaaatattgtggaaccaatactcatatgtatgacat 488
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429  atttacaatttttgaaaaatgtttaaaatattgtggaaccaatactcatatgtatgacat 488

                                                                        
Query: 489  gttaattaaattaacagttcagtggatttattctataattccattcaataaattaaatnn 548
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489  gttaattaaattaacagttcagtggatttattctataattccattcaataaattaaatnn 548

                                                                        
Query: 549  nnnnnnnntaaattcaaataataaagttgatttgatagttttggcaaatcctttatatca 608
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549  nnnnnnnntaaattcaaataataaagttgatttgatagttttggcaaatcctttatatca 608

                                                                        
Query: 609  gaaattggttgatttaagttcattaaatatttcgtttgttaatgatgcagcaagtttttg 668
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609  gaaattggttgatttaagttcattaaatatttcgtttgttaatgatgcagcaagtttttg 668

                                                                        
Query: 669  taaagaaataaaagatggcggtagtgatcataatttatttattattttaatgaaaagatt 728
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669  taaagaaataaaagatggcggtagtgatcataatttatttattattttaatgaaaagatt 728

                                                                        
Query: 729  aggtggtattgaatttattaaagaagcatataaacaattaacagatttatcaaatggata 788
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729  aggtggtattgaatttattaaagaagcatataaacaattaacagatttatcaaatggata 788

                                                                        
Query: 789  catagatgaattttgttattatgagaaattattactttcaagtctttcaaaacaacaaca 848
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789  catagatgaattttgttattatgagaaattattactttcaagtctttcaaaacaacaaca 848

                                                                        
Query: 849  aaatgaaattcaaatctttattgaccacctaaaatatttaatgaaaggaaatcaaatatg 908
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849  aaatgaaattcaaatctttattgaccacctaaaatatttaatgaaaggaaatcaaatatg 908

                                                                        
Query: 909  gtcaaccaaaacaataagatatgcaacggaagatcatccaattattcaattaagaaattc 968
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909  gtcaaccaaaacaataagatatgcaacggaagatcatccaattattcaattaagaaattc 968

                                                                        
Query: 969  aactaataaattaattgaaaataatattaatatggataaagtatcattaacaaataaaaa 1028
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969  aactaataaattaattgaaaataatattaatatggataaagtatcattaacaaataaaaa 1028

                                           
Query: 1029 ctatatttaatatatttatattattatattt 1059
            |||||||||||||||||||||||||||||||
Sbjct: 1029 ctatatttaatatatttatattattatattt 1059


>Contig-U12210-1 (Contig-U12210-1Q) /CSM_Contig/Contig-U12210-1Q.Seq.d
          Length = 2168

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 839 aacaacaacaaaatgaaattcaaat 863
           |||||||||||||| ||||||||||
Sbjct: 348 aacaacaacaaaatcaaattcaaat 372


>Contig-U04364-1 (Contig-U04364-1Q) /CSM_Contig/Contig-U04364-1Q.Seq.d
          Length = 719

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 972 taataaattaattgaaaataatatt 996
           |||||| ||||||||||||||||||
Sbjct: 250 taataatttaattgaaaataatatt 274


 Score = 32.2 bits (16), Expect = 1.2
 Identities = 22/24 (91%)
 Strand = Plus / Minus

                                   
Query: 973 aataaattaattgaaaataatatt 996
           ||||||||| | ||||||||||||
Sbjct: 96  aataaattactggaaaataatatt 73


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 36,063
Number of Sequences: 6905
Number of extensions: 36063
Number of successful extensions: 4708
Number of sequences better than 10.0: 630
length of query: 1067
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1051
effective length of database: 5,564,391
effective search space: 5848174941
effective search space used: 5848174941
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.15
Homology vs DNA 
Query= Contig-U09385-1 (Contig-U09385-1Q) /CSM_Contig/Contig-U09385-1Q.Seq.d
         (1067 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C93070) Dictyostelium discoideum slug cDNA, clone SSF738.        850   0.0    1
(AU073028) Dictyostelium discoideum slug cDNA, clone SSF738.      337   5e-88  1
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    36   4e-05  17
(CP000963) Clostridium botulinum A3 str. Loch Maree plasmid ...    34   1e-04  16
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    36   0.002  16
(AC005505) Plasmodium falciparum chromosome 12 clone 3D7, **...    40   0.002  12
(DT177125) JGI_ANNO45973.rev ANNO Pimephales promelas Whole ...    54   0.003  2
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    32   0.005  14
(AC116918) Dictyostelium discoideum chromosome 2 map 6143698...    40   0.007  7
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s...    40   0.015  13
(CP000111) Prochlorococcus marinus str. MIT 9312, complete g...    34   0.018  22
(AE014850) Plasmodium falciparum 3D7 chromosome 12, section ...    40   0.021  12
(CP000016) Candidatus Blochmannia pennsylvanicus str. BPEN, ...    38   0.037  16
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    34   0.039  10
(AL160154) Human DNA sequence from clone RP11-447N10 on chro...    52   0.044  1
(AC212484) Pongo abelii chromosome 13 clone CH276-331F10, WO...    52   0.044  1
(ER595692) 1093016221997 Global-Ocean-Sampling_GS-36-01-01-2...    52   0.044  1
(CU856784) A BAC library has been constructed from PN40024 g...    52   0.044  1
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...    34   0.045  12
(CP000361) Arcobacter butzleri RM4018, complete genome.            40   0.052  21
(CS351051) Sequence 435 from Patent WO2006013561.                  38   0.062  7
(AL049842) Human DNA sequence from clone RP1-129L7 on chromo...    38   0.062  7
(AC193801) Pan troglodytes BAC clone CH251-398N3 from chromo...    34   0.064  7
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont...    36   0.066  12
(CT573341) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    36   0.067  7
(AM285320) Spiroplasma citri GII3-3X chromosome, contig Cont...    38   0.068  6
(EK500637) 1095505209133 Global-Ocean-Sampling_GS-32-01-01-1...    36   0.084  4
(AC223703) Bos taurus clone CH240-460O12, WORKING DRAFT SEQU...    36   0.10   2
(AC004688) Plasmodium falciparum chromosome 12 clone 3D7, **...    34   0.10   10
(AC092329) Homo sapiens chromosome 19 clone RP11-15H20, comp...    34   0.11   7
(AC024483) Homo sapiens chromosome 19 clone RP11-15H20 map 1...    34   0.12   7
(FH270499) CHO_OF4144xj03r1.ab1 CHO_OF4 Nicotiana tabacum ge...    38   0.13   2
(ET883905) CHO_OF427xf21f1.ab1 CHO_OF Nicotiana tabacum geno...    38   0.13   2
(FH441568) CHO_OF4618xj13r1.ab1 CHO_OF4 Nicotiana tabacum ge...    38   0.14   2
(AC111889) Rattus norvegicus clone CH230-50F1, *** SEQUENCIN...    46   0.14   3
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI...    34   0.19   12
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    36   0.19   20
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    32   0.20   11
(AP003655) Mus musculus genomic DNA, chromosome 16q clone:RP...    46   0.20   4
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co...    36   0.22   17
(AC150219) Callithrix jacchus clone CH259-267E21, WORKING DR...    36   0.24   9
(AC139882) Medicago truncatula clone mth2-32f21, complete se...    38   0.25   6
(EF197847) Capsella rubella miR319a microRNA locus, genomic ...    38   0.28   5
(CR855273) Zebrafish DNA sequence from clone DKEYP-34E1 in l...    40   0.29   6
(AM422018) Candidatus Phytoplasma australiense complete genome.    32   0.36   21
(AC210506) Populus trichocarpa clone POP040-E06, complete se...    36   0.36   8
(AM448512) Vitis vinifera contig VV78X197454.6, whole genome...    38   0.38   2
(AC214843) Macaca mulatta chromosome UNKNOWN clone CH250-431...    44   0.38   4
(CP000395) Borrelia afzelii PKo, complete genome.                  34   0.38   16
(AC025008) Homo sapiens chromosome 1 clone RP11-223G4 map 1,...    34   0.38   2
(AL035411) Human DNA sequence from clone RP4-592A1 on chromo...    34   0.39   2
(CP000576) Prochlorococcus marinus str. MIT 9301, complete g...    38   0.39   19
(EI896179) VUH1-83P17TR VUUBBa (VUH1) Vigna unguiculata geno...    34   0.41   3
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5...    38   0.42   12
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    32   0.42   13
(EI894934) VUH1-83O21TR VUUBBa (VUH1) Vigna unguiculata geno...    34   0.42   3
(AC134544) Mus musculus chromosome UNK clone RP24-456G13, WO...    36   0.43   8
(AC154501) Mus musculus BAC clone RP24-87F14 from chromosome...    34   0.47   9
(AM285316) Spiroplasma citri GII3-3X chromosome, contig Cont...    36   0.47   4
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s...    36   0.48   12
(CP000312) Clostridium perfringens SM101, complete genome.         36   0.49   19
(ER500810) 1093015398271 Global-Ocean-Sampling_GS-35-01-01-1...    34   0.50   3
(AQ584906) RPCI-11-454N17.TJ RPCI-11 Homo sapiens genomic cl...    34   0.51   2
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome.       30   0.52   14
(EF062872) Partula affinis haplotype 019 cytochrome oxidase ...    36   0.53   2
(CP000048) Borrelia hermsii DAH, complete genome.                  34   0.58   17
(AC117080) Dictyostelium discoideum chromosome 2 map complem...    36   0.61   8
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    38   0.62   19
(AP009320) Solanum lycopersicum genomic DNA, chromosome 8, c...    38   0.62   8
(DD010736) Diagnosis of known genetic Parameters within the ...    42   0.62   13
(DE146517) Bombyx mori genomic DNA, Fosmid clone:RO0285-J08_R.     38   0.66   2
(AM482766) Vitis vinifera contig VV78X265659.9, whole genome...    48   0.69   1
(AC221151) Bos taurus clone CH240-395E22, WORKING DRAFT SEQU...    48   0.69   1
(ET110375) QM0AAC18DE10RM1 CCH3 Citrus clementina genomic cl...    48   0.69   1
(ET080825) QM0AAC1BD01FM1 CCH3 Citrus clementina genomic clo...    48   0.69   1
(ET068461) QM0AAA1BD01FM1 CCL1 Citrus clementina genomic clo...    48   0.69   1
(ED813472) ML__Ba0082K11f ML__Ba Mimulus lewisii genomic, ge...    48   0.69   1
(ED807192) ML__Ba0002N17r ML__Ba Mimulus lewisii genomic, ge...    48   0.69   1
(CD256095) AGENCOURT_14159250 NICHD_XGC_Brn1 Xenopus laevis ...    48   0.69   1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    34   0.71   11
(BX927415) Zebrafish DNA sequence from clone CH211-1B13 in l...    36   0.72   6
(AL034557) Plasmodium falciparum MAL4P1.                           32   0.72   13
(CP000246) Clostridium perfringens ATCC 13124, complete genome.    36   0.73   17
(CR956401) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   0.83   8
(AC084378) Homo sapiens chromosome 4 clone RP11-710D11, WORK...    38   0.86   10
(AL929134) Zebrafish DNA sequence from clone CH211-11I22 in ...    36   0.92   6
(AC185135) Medicago truncatula chromosome 7 clone mth2-107i1...    36   0.92   7
(CU468284) Zebrafish DNA sequence from clone CH73-111A8 in l...    36   0.93   5
(AC225539) Medicago truncatula clone mth2-69c17, WORKING DRA...    34   0.96   8
(AC179520) Strongylocentrotus purpuratus clone R3-6C18, WORK...    46   0.98   6
(EE132900) SiJWC12ADE Lausanne fire ant library Solenopsis i...    38   0.99   3
(AC171646) Rhesus Macaque CHR4 BAC CH250-476F18 (Children's ...    32   1.1    8
(AC097661) Homo sapiens BAC clone RP11-553E15 from 4, comple...    34   1.1    6
(CU468013) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    40   1.1    6
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1...    34   1.1    9
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    32   1.1    18
(DT351692) JGI_CABS952.rev CABS Pimephales promelas kidney 7...    32   1.1    4
(CR507061) mth4-41F4FM1 BAC end, cultivar Jemalong A17 of Me...    38   1.2    2
(CP000883) Hemiselmis andersenii chromosome 3, complete sequ...    34   1.2    10
(AC011281) Homo sapiens clone RP11-13L19, WORKING DRAFT SEQU...    42   1.2    5

>(C93070) Dictyostelium discoideum slug cDNA, clone SSF738.
          Length = 512

 Score =  850 bits (429), Expect = 0.0
 Identities = 429/429 (100%)
 Strand = Plus / Plus


Query: 557 taaattcaaataataaagttgatttgatagttttggcaaatcctttatatcagaaattgg 616
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   taaattcaaataataaagttgatttgatagttttggcaaatcctttatatcagaaattgg 60


Query: 617 ttgatttaagttcattaaatatttcgtttgttaatgatgcagcaagtttttgtaaagaaa 676
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttgatttaagttcattaaatatttcgtttgttaatgatgcagcaagtttttgtaaagaaa 120


Query: 677 taaaagatggcggtagtgatcataatttatttattattttaatgaaaagattaggtggta 736
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taaaagatggcggtagtgatcataatttatttattattttaatgaaaagattaggtggta 180


Query: 737 ttgaatttattaaagaagcatataaacaattaacagatttatcaaatggatacatagatg 796
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttgaatttattaaagaagcatataaacaattaacagatttatcaaatggatacatagatg 240


Query: 797 aattttgttattatgagaaattattactttcaagtctttcaaaacaacaacaaaatgaaa 856
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aattttgttattatgagaaattattactttcaagtctttcaaaacaacaacaaaatgaaa 300


Query: 857 ttcaaatctttattgaccacctaaaatatttaatgaaaggaaatcaaatatggtcaacca 916
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttcaaatctttattgaccacctaaaatatttaatgaaaggaaatcaaatatggtcaacca 360


Query: 917 aaacaataagatatgcaacggaagatcatccaattattcaattaagaaattcaactaata 976
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaacaataagatatgcaacggaagatcatccaattattcaattaagaaattcaactaata 420


Query: 977 aattaattg 985
           |||||||||
Sbjct: 421 aattaattg 429

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,412,745,049
Number of extensions: 102475597
Number of successful extensions: 9948618
Number of sequences better than 10.0: 404
Length of query: 1067
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1043
Effective length of database: 97,308,875,965
Effective search space: 101493157631495
Effective search space used: 101493157631495
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.25
Homology vs Protein 
Query= Contig-U09385-1 (Contig-U09385-1Q) /CSM_Contig/Contig-U09385-1Q.Seq.d
         (1067 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115680_30(AC115680|pid:none) Dictyostelium discoideum chromoso...   108   4e-22
AC117176_25(AC117176|pid:none) Dictyostelium discoideum chromoso...    77   8e-13
AC115680_28(AC115680|pid:none) Dictyostelium discoideum chromoso...    56   2e-06
AM238664_831(AM238664|pid:none) Streptomyces ambofaciens ATCC 23...    45   0.006
FN357354_36(FN357354|pid:none) Schistosoma mansoni genome sequen...    37   1.5
(Q9F1V8) RecName: Full=Uncharacterized protein in glk 3'region; ...    36   2.0
CP000875_2973(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ...    36   2.0
AP009493_1269(AP009493|pid:none) Streptomyces griseus subsp. gri...    36   2.0
AM238663_738(AM238663|pid:none) Streptomyces ambofaciens ATCC 23...    36   2.6
DQ456846_1(DQ456846|pid:none) Hypocrea virens cyclase (Vir4) mRN...    35   5.8
CP000875_2974(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ...    34   7.6
BT031102_1(BT031102|pid:none) Drosophila melanogaster IP08063 fu...    34   7.6
CP001047_384(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ...    34   9.9

>AC115680_30(AC115680|pid:none) Dictyostelium discoideum chromosome
           2 map 4915084-5005461 strain AX4, complete sequence.
          Length = 349

 Score =  108 bits (269), Expect = 4e-22
 Identities = 83/333 (24%), Positives = 142/333 (42%), Gaps = 34/333 (10%)
 Frame = +1

Query: 73  LCFNDFNFPKEWEVVPNSFKYIDIVIKEIIGFGLIKENDQELKMIVNQAIS-IAAYFWPY 249
           L   D  FPK WE  P+  +Y+  V +E I   + ++ D E+ ++ +  ++ ++ +FWP
Sbjct: 6   LSLKDIKFPKSWETKPSKIEYMQFVYQEAIDMKVWRK-DNEIDILTHHHVTDLSRFFWPN 64

Query: 250 ANEEQMVMGGSVLCWCVLFDDPLDTNKLD--EKKGLEIVSRTEKXXXXXXXXXXXXXXEK 423
           A+ E +V+G  ++ W   FDD  D   +D  E +   +V+R  K              E+
Sbjct: 65  ADFEGLVLGAELMVWFFAFDDLFDGGFIDDNENEQYRLVNRMNKVFLEGTIEDDSTGAER 124

Query: 424 YGFTIFEKCLKYCGTNTH-MYDMLIKLTVQWIYSIIPFNKLNXXXXNSN----------- 567
            G+ +  K    CG      +       VQW+ SIIPF KL     + +
Sbjct: 125 MGYYLRNKVRAICGEKRQSTFHRFNSSCVQWVDSIIPFIKLKRNQKSLDFNLYIHHRKFN 184

Query: 568 -----------------NKVDLIVLANPLYQKLVDLSSLNISFVNDAASFCKEIKDGGSD 696
                            + ++  +  +  + K+ ++    I+ VND  S+ KEIK+ G+
Sbjct: 185 IGAIPCFLVSEIILDPMSNIECFIWLDSRWIKMSEIICEIIALVNDCVSYEKEIKENGAP 244

Query: 697 HN--LFIILMKRLGGIEFIKEAYKQLTDLSNGYIDEFCYYEXXXXXXXXXXXXNEIQIFI 870
            N   FI + K L   E  +     L +L N YI+    +             N I I +
Sbjct: 245 LNSLKFIQIEKNLNLQESFEYISNYLNELINQYIELETSFIKSYKPITSNYNSNFIAI-V 303

Query: 871 DHLKYLMKGNQIWSTKTIRYATEDHPIIQLRNS 969
           +HL  +   N  WST+T RY ++  P ++LR +
Sbjct: 304 EHLHNMSFANVSWSTQTPRYLSQTQPFLELRRN 336

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,429,001,357
Number of extensions: 25488046
Number of successful extensions: 67184
Number of sequences better than 10.0: 13
Number of HSP's gapped: 67158
Number of HSP's successfully gapped: 15
Length of query: 355
Length of database: 1,040,966,779
Length adjustment: 129
Effective length of query: 226
Effective length of database: 627,614,014
Effective search space: 141840767164
Effective search space used: 141840767164
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.95  gvh: 0.28  alm: 0.38  top: 0.60  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for Contig-U09385-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0