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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01567-1
Contig ID Contig-U01567-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01567-1 (Contig-U01567-1Q) /CSM_Contig/Contig-U01567-1Q.Seq.d
AATTGTAAAAAATAAAAAATGGGGGGAATATTGTAACGAAATGTCCAAGG
ATGGGAAATGGGGGGATCAATTAAATTTTTTGGGTGGTGGTGAAAAATTT
GGTTCCAAGAATTCAATTATTTTTTTTGGTGNAAGTCAAAGNAAATTTTT
CATNGGAATCATTCCATTTAAAAGTTTAAAGGGTAAAGGTTTATTATTAT
TTCANTATGGGGGAATTCAATANGGTTTTTTANGTCCCCTAAGGTAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTATAGAAA
TATATTTTTTTTTCATAAACATCTATCTTTTCTCCTTTTTAAAAATAAAA
AAAAAAAAAAACTATTAATATAATTTGCATTCTAAAATAAAAAAAAACTA
TTTATGGCTTGCATTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gap no gap
Contig length 446
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 7378298
End point 7378480
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U01567
List of clone(s) 

est1=SSB690Z,1,447
Translated Amino Acid sequence 
IVKNKKWGEYCNEMSKDGKWGDQLNFLGGGEKFGSKNSIIFFGXSQXKFFXGIIPFKSLK
GKGLLLFXYGGIQXGFLXPLR*kkkkkkkkkkkkkknyrnifffhkhlsfllfknkkkkk
lli*faf*nkkklfmacilkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
nckk*kmggil*rnvqgwemggsikffgww*kiwfqefnyffwxkskxifhxnhsi*kfk
g*rfiiisxwgnsixffxspkvkkkkkkkkkkkkkkkl*kyiffs*tsifspf*k*kkkk
tiniicilk*kktiyglhskkkkkkkkk


Frame B:
IVKNKKWGEYCNEMSKDGKWGDQLNFLGGGEKFGSKNSIIFFGXSQXKFFXGIIPFKSLK
GKGLLLFXYGGIQXGFLXPLR*kkkkkkkkkkkkkknyrnifffhkhlsfllfknkkkkk
lli*faf*nkkklfmacilkkkkkkkkk


Frame C:
l*kiknggnivtkcprmgnggin*ifwvvvknlvpriqlfflvxvkxnfsxesfhlkv*r
vkvyyyfxmgefnxvfxvp*gkkkkkkkkkkkkkkkiieiyfffiniylfsflkikkkkn
y*ynlhskikknylwlaf*kkkkkkkkk
own update 2004. 6. 7
Homology vs CSM-cDNA 
Query= Contig-U01567-1 (Contig-U01567-1Q)
/CSM_Contig/Contig-U01567-1Q.Seq.d
         (446 letters)

Database: CSM
           8361 sequences; 7,895,291 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01567-1 (Contig-U01567-1Q) /CSM_Contig/Conti...   365  e-101
Contig-U11174-1 (Contig-U11174-1Q) /CSM_Contig/Conti...    74  2e-13
Contig-U12712-1 (Contig-U12712-1Q) /CSM_Contig/Conti...    66  5e-11
Contig-U11075-1 (Contig-U11075-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U01503-1 (Contig-U01503-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U09455-1 (Contig-U09455-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U07980-1 (Contig-U07980-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U14166-1 (Contig-U14166-1Q) /CSM_Contig/Conti...    32  0.67
Contig-U13325-1 (Contig-U13325-1Q) /CSM_Contig/Conti...    32  0.67
Contig-U12257-1 (Contig-U12257-1Q) /CSM_Contig/Conti...    32  0.67

>Contig-U01567-1 (Contig-U01567-1Q) /CSM_Contig/Contig-U01567-1Q.Seq.d
          Length = 446

 Score =  365 bits (184), Expect = e-101
 Identities = 218/226 (96%)
 Strand = Plus / Plus

                                                                       
Query: 20  tggggggaatattgtaacgaaatgtccaaggatgggaaatggggggatcaattaaatttt 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20  tggggggaatattgtaacgaaatgtccaaggatgggaaatggggggatcaattaaatttt 79

                                                                       
Query: 80  ttgggtggtggtgaaaaatttggttccaagaattcaattannnnnnnnggtgnaagtcaa 139
           ||||||||||||||||||||||||||||||||||||||||        ||||||||||||
Sbjct: 80  ttgggtggtggtgaaaaatttggttccaagaattcaattattttttttggtgnaagtcaa 139

                                                                       
Query: 140 agnaaatttttcatnggaatcattccatttaaaagtttaaagggtaaaggtttattatta 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 agnaaatttttcatnggaatcattccatttaaaagtttaaagggtaaaggtttattatta 199

                                                         
Query: 200 tttcantatgggggaattcaatanggttttttangtcccctaaggt 245
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tttcantatgggggaattcaatanggttttttangtcccctaaggt 245


 Score = 58.0 bits (29), Expect = 1e-08
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                   
Query: 362 ctattaatataatttgcattctaaaatnnnnnnnnnctatttatggcttgcattct 417
           |||||||||||||||||||||||||||         ||||||||||||||||||||
Sbjct: 362 ctattaatataatttgcattctaaaataaaaaaaaactatttatggcttgcattct 417


 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 314 cataaacatctatcttttctccttttt 340
           |||||||||||||||||||||||||||
Sbjct: 314 cataaacatctatcttttctccttttt 340


>Contig-U11174-1 (Contig-U11174-1Q) /CSM_Contig/Contig-U11174-1Q.Seq.d
          Length = 2587

 Score = 73.8 bits (37), Expect = 2e-13
 Identities = 142/181 (78%)
 Strand = Plus / Plus

                                                                        
Query: 29   tattgtaacgaaatgtccaaggatgggaaatggggggatcaattaaattttttgggtggt 88
            ||||||||||| ||||| ||| |||| || ||||| ||||| |||| | | |||| || |
Sbjct: 2366 tattgtaacgatatgtcaaagaatggaaattggggtgatcatttaactctcttggctgct 2425

                                                                        
Query: 89   ggtgaaaaatttggttccaagaattcaattannnnnnnnggtgnaagtcaaagnaaattt 148
            | |||| | |||||||| |||| |||||| |        | || ||||||||| || |||
Sbjct: 2426 gctgaacattttggttcaaagatttcaatcatctcttctgttgaaagtcaaagtaacttt 2485

                                                                        
Query: 149  ttcatnggaatcattccatttaaaagtttaaagggtaaaggtttattattatttcantat 208
            ||||| | ||||||||||| ||||| |||||| | ||||| ||||||||||| ||| |||
Sbjct: 2486 ttcattgaaatcattccatctaaaattttaaatgataaagttttattattatctcattat 2545

             
Query: 209  g 209
            |
Sbjct: 2546 g 2546


>Contig-U12712-1 (Contig-U12712-1Q) /CSM_Contig/Contig-U12712-1Q.Seq.d
          Length = 750

 Score = 65.9 bits (33), Expect = 5e-11
 Identities = 65/77 (84%)
 Strand = Plus / Plus

                                                                       
Query: 133 aagtcaaagnaaatttttcatnggaatcattccatttaaaagtttaaagggtaaaggttt 192
           ||||||||| || |||||||| | ||||||||||| ||||| ||||||   ||||| |||
Sbjct: 642 aagtcaaagtaactttttcattgaaatcattccatctaaaattttaaatnataaagtttt 701

                            
Query: 193 attattatttcantatg 209
           |||||||| ||| ||||
Sbjct: 702 attattatctcattatg 718


  Database: CSM
    Posted date:  Jun 7, 2004  8:33 AM
  Number of letters in database: 7,895,291
  Number of sequences in database:  8361
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,018
Number of Sequences: 8361
Number of extensions: 19018
Number of successful extensions: 940
Number of sequences better than 10.0: 61
length of query: 446
length of database: 7,895,291
effective HSP length: 16
effective length of query: 430
effective length of database: 7,761,515
effective search space: 3337451450
effective search space used: 3337451450
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5. 2
Homology vs DNA 
Query= Contig-U01567-1 (Contig-U01567-1Q) /CSM_Contig/Contig-U01567-1Q.Seq.d
         (446 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU037267) Dictyostelium discoideum slug cDNA, clone SSB690.      198   e-126  6
(BJ378645) Dictyostelium discoideum cDNA clone:ddc32k11, 3' ...    74   6e-16  2
(BJ437063) Dictyostelium discoideum cDNA clone:ddv33g02, 3' ...    74   6e-16  2
(BJ355205) Dictyostelium discoideum cDNA clone:dda56f05, 3' ...    72   2e-15  2
(BJ348911) Dictyostelium discoideum cDNA clone:dda34c22, 3' ...    72   2e-15  2
(BJ382274) Dictyostelium discoideum cDNA clone:ddc44o04, 3' ...    72   2e-15  2
(BJ354377) Dictyostelium discoideum cDNA clone:dda53m09, 3' ...    72   2e-15  2
(BJ347871) Dictyostelium discoideum cDNA clone:dda31o10, 3' ...    72   2e-15  2
(BJ354362) Dictyostelium discoideum cDNA clone:dda53j11, 3' ...    72   2e-15  2
(BJ347768) Dictyostelium discoideum cDNA clone:dda31i06, 3' ...    72   2e-15  2
(BJ354019) Dictyostelium discoideum cDNA clone:dda52b12, 3' ...    72   2e-15  2
(BJ352067) Dictyostelium discoideum cDNA clone:dda45d17, 3' ...    72   2e-15  2
(BJ384074) Dictyostelium discoideum cDNA clone:ddc48l06, 3' ...    72   2e-15  2
(BJ383090) Dictyostelium discoideum cDNA clone:ddc46h19, 3' ...    72   2e-15  2
(BJ378443) Dictyostelium discoideum cDNA clone:ddc31a04, 3' ...    72   2e-15  2
(BJ404399) Dictyostelium discoideum cDNA clone:dds28l09, 3' ...    72   2e-15  2
(BJ379126) Dictyostelium discoideum cDNA clone:ddc33i24, 3' ...    72   2e-15  2
(BJ386127) Dictyostelium discoideum cDNA clone:ddc57a11, 3' ...    72   2e-15  2
(BJ378522) Dictyostelium discoideum cDNA clone:ddc32b05, 3' ...    72   2e-15  2
(BJ379670) Dictyostelium discoideum cDNA clone:ddc35i17, 3' ...    72   2e-15  2
(BJ354168) Dictyostelium discoideum cDNA clone:dda52c20, 3' ...    72   2e-15  2
(BJ348681) Dictyostelium discoideum cDNA clone:dda34b03, 3' ...    72   2e-15  2
(BJ379247) Dictyostelium discoideum cDNA clone:ddc34a09, 3' ...    72   2e-15  2
(BJ379234) Dictyostelium discoideum cDNA clone:ddc34o02, 3' ...    72   2e-15  2
(BJ378745) Dictyostelium discoideum cDNA clone:ddc32o15, 3' ...    72   2e-15  2
(BJ379932) Dictyostelium discoideum cDNA clone:ddc36a14, 3' ...    72   2e-15  2
(BJ348655) Dictyostelium discoideum cDNA clone:dda33m19, 3' ...    72   2e-15  2
(BJ440609) Dictyostelium discoideum cDNA clone:ddv44p02, 3' ...    72   2e-15  2
(BJ382616) Dictyostelium discoideum cDNA clone:ddc45g12, 3' ...    72   2e-15  2
(BJ445040) Dictyostelium discoideum cDNA clone:ddv58b07, 3' ...    72   2e-15  2
(BJ379570) Dictyostelium discoideum cDNA clone:ddc35e09, 3' ...    72   2e-15  2
(BJ379735) Dictyostelium discoideum cDNA clone:ddc35g21, 3' ...    72   2e-15  2
(BJ347811) Dictyostelium discoideum cDNA clone:dda31b12, 3' ...    72   2e-15  2
(AU039945) Dictyostelium discoideum slug cDNA, clone SLG802.       72   2e-15  2
(BJ381781) Dictyostelium discoideum cDNA clone:ddc42k13, 3' ...    72   2e-15  2
(BJ381810) Dictyostelium discoideum cDNA clone:ddc42a19, 3' ...    72   2e-15  2
(BJ441087) Dictyostelium discoideum cDNA clone:ddv45k13, 3' ...    72   2e-15  2
(BJ381356) Dictyostelium discoideum cDNA clone:ddc41c11, 3' ...    72   2e-15  2
(BJ382051) Dictyostelium discoideum cDNA clone:ddc43a23, 3' ...    72   2e-15  2
(AU267264) Dictyostelium discoideum vegetative cDNA clone:VS...    72   2e-15  2
(BJ381913) Dictyostelium discoideum cDNA clone:ddc43g10, 3' ...    72   2e-15  2
(BJ381604) Dictyostelium discoideum cDNA clone:ddc42e05, 3' ...    72   2e-15  2
(BJ385341) Dictyostelium discoideum cDNA clone:ddc54k15, 3' ...    68   4e-14  2
(BJ445311) Dictyostelium discoideum cDNA clone:ddv59h06, 3' ...    66   1e-13  2
(BJ445407) Dictyostelium discoideum cDNA clone:ddv59j10, 3' ...    66   1e-13  2
(BJ386244) Dictyostelium discoideum cDNA clone:ddc57h18, 3' ...    66   1e-13  2
(BJ353846) Dictyostelium discoideum cDNA clone:dda51j17, 3' ...    66   1e-13  2
(BJ357232) Dictyostelium discoideum cDNA clone:dda62j19, 3' ...    52   2e-13  3
(BJ351127) Dictyostelium discoideum cDNA clone:dda42k02, 3' ...    72   5e-13  2
(BJ383349) Dictyostelium discoideum cDNA clone:ddc52p17, 3' ...    64   5e-13  2
(BJ352352) Dictyostelium discoideum cDNA clone:dda46a14, 3' ...    72   5e-13  2
(BJ383654) Dictyostelium discoideum cDNA clone:ddc53d20, 3' ...    64   5e-13  2
(BJ441105) Dictyostelium discoideum cDNA clone:ddv45n15, 3' ...    64   5e-13  2
(BJ445420) Dictyostelium discoideum cDNA clone:ddv59l12, 3' ...    64   5e-13  2
(BJ342503) Dictyostelium discoideum cDNA clone:dda14g11, 3' ...    52   9e-13  3
(BJ439339) Dictyostelium discoideum cDNA clone:ddv40k03, 3' ...    68   2e-12  2
(BJ356489) Dictyostelium discoideum cDNA clone:dda60a13, 3' ...    72   4e-12  2
(BJ381107) Dictyostelium discoideum cDNA clone:ddc40k08, 3' ...    68   5e-11  2
(BJ349305) Dictyostelium discoideum cDNA clone:dda36g06, 3' ...    54   4e-10  2
(BJ401044) Dictyostelium discoideum cDNA clone:dds15o23, 3' ...    54   4e-10  2
(BJ441620) Dictyostelium discoideum cDNA clone:ddv47e09, 3' ...    52   1e-09  3
(BJ374812) Dictyostelium discoideum cDNA clone:ddc16k08, 3' ...    52   2e-09  2
(BJ343482) Dictyostelium discoideum cDNA clone:dda16a07, 3' ...    52   2e-09  2
(BJ377771) Dictyostelium discoideum cDNA clone:ddc25h24, 3' ...    52   2e-09  2
(BJ383742) Dictyostelium discoideum cDNA clone:ddc47h02, 3' ...    72   2e-08  1
(BJ429295) Dictyostelium discoideum cDNA clone:ddv3a03, 3' e...    46   9e-08  2
(BJ385016) Dictyostelium discoideum cDNA clone:ddc51d14, 3' ...    56   2e-07  2
(BJ404046) Dictyostelium discoideum cDNA clone:dds27j06, 3' ...    44   4e-07  2
(BJ345737) Dictyostelium discoideum cDNA clone:dda28l17, 3' ...    44   4e-07  2
(BJ352179) Dictyostelium discoideum cDNA clone:dda45m22, 3' ...    66   1e-06  1
(BJ383418) Dictyostelium discoideum cDNA clone:ddc52o23, 3' ...    42   1e-06  2
(BJ382434) Dictyostelium discoideum cDNA clone:ddc44a22, 3' ...    42   1e-06  2
(AU037427) Dictyostelium discoideum slug cDNA, clone SSD625.       64   5e-06  1
(BJ384642) Dictyostelium discoideum cDNA clone:ddc50p01, 3' ...    50   4e-05  2
(BJ345493) Dictyostelium discoideum cDNA clone:dda23i24, 3' ...    42   0.001  2
(BJ355052) Dictyostelium discoideum cDNA clone:dda55i13, 3' ...    42   0.001  2
(FH901612) CHO_ONF080xl06f1.ab1 CHO_ONF Nicotiana tabacum ge...    50   0.072  1
(AC116123) Mus musculus chromosome 6, clone RP23-87I4, compl...    46   1.1    1
(AC106683) Rattus norvegicus clone CH230-60D16, *** SEQUENCI...    46   1.1    1
(AC201478) Strongylocentrotus purpuratus clone R3-3055D10, W...    46   1.1    1
(AZ688230) ENTJU13TR Entamoeba histolytica Sheared DNA Entam...    46   1.1    1
(DH828645) Rattus norvegicus DNA, BAC clone: RNB1-435C24, 5'...    46   1.1    1
(DH557872) Rattus norvegicus DNA, BAC clone: RNB1-068L20, 5'...    46   1.1    1
(BJ350603) Dictyostelium discoideum cDNA clone:dda40n09, 3' ...    36   1.6    2
(CU076069) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   2.2    2
(CU179690) Pig DNA sequence from clone CH242-250O5 on chromo...    44   4.4    1
(AC120489) Rattus norvegicus clone CH230-118C6, *** SEQUENCI...    44   4.4    1
(AC110103) Rattus norvegicus clone CH230-194P19, *** SEQUENC...    44   4.4    1
(CU464077) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   4.4    1
(AC180508) Strongylocentrotus purpuratus clone R3-3099O12, W...    44   4.4    1
(FI015408) CHO_OF6918xe08r1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   4.4    1
(FI015273) CHO_OF6918xe07r1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   4.4    1
(DH802442) Rattus norvegicus DNA, BAC clone: RNB1-398H08, 5'...    44   4.4    1
(DH640500) Rattus norvegicus DNA, BAC clone: RNB1-179N11, 5'...    44   4.4    1
(DE206711) Branchiostoma floridae DNA, clone: CH302-094_K19_...    44   4.4    1
(CT077469) Sus scrofa genomic clone CH242-71B4, genomic surv...    44   4.4    1
(FM130781) Rattus norvegicus EST, 5'-end sequence, clone etn...    44   4.4    1

>(AU037267) Dictyostelium discoideum slug cDNA, clone SSB690.
          Length = 447

 Score =  198 bits (100), Expect(6) = e-126
 Identities = 100/100 (100%)
 Strand = Plus / Plus


Query: 20  tggggggaatattgtaacgaaatgtccaaggatgggaaatggggggatcaattaaatttt 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20  tggggggaatattgtaacgaaatgtccaaggatgggaaatggggggatcaattaaatttt 79


Query: 80  ttgggtggtggtgaaaaatttggttccaagaattcaatta 119
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  ttgggtggtggtgaaaaatttggttccaagaattcaatta 119

 Score =  198 bits (100), Expect(6) = e-126
 Identities = 118/118 (100%)
 Strand = Plus / Plus


Query: 128 ggtgnaagtcaaagnaaatttttcatnggaatcattccatttaaaagtttaaagggtaaa 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ggtgnaagtcaaagnaaatttttcatnggaatcattccatttaaaagtttaaagggtaaa 187


Query: 188 ggtttattattatttcantatgggggaattcaatanggttttttangtcccctaaggt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ggtttattattatttcantatgggggaattcaatanggttttttangtcccctaaggt 245

 Score = 54.0 bits (27), Expect(6) = e-126
 Identities = 27/27 (100%)
 Strand = Plus / Plus


Query: 314 cataaacatctatcttttctccttttt 340
           |||||||||||||||||||||||||||
Sbjct: 314 cataaacatctatcttttctccttttt 340

 Score = 54.0 bits (27), Expect(6) = e-126
 Identities = 27/27 (100%)
 Strand = Plus / Plus


Query: 362 ctattaatataatttgcattctaaaat 388
           |||||||||||||||||||||||||||
Sbjct: 362 ctattaatataatttgcattctaaaat 388

 Score = 40.1 bits (20), Expect(6) = e-126
 Identities = 20/20 (100%)
 Strand = Plus / Plus


Query: 398 ctatttatggcttgcattct 417
           ||||||||||||||||||||
Sbjct: 398 ctatttatggcttgcattct 417

 Score = 26.3 bits (13), Expect(6) = e-126
 Identities = 13/13 (100%)
 Strand = Plus / Plus


Query: 292 ttatagaaatata 304
           |||||||||||||
Sbjct: 292 ttatagaaatata 304

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 357,437,575
Number of extensions: 26908329
Number of successful extensions: 1831929
Number of sequences better than 10.0: 97
Length of query: 446
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 423
Effective length of database: 99,442,330,388
Effective search space: 42064105754124
Effective search space used: 42064105754124
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.18
Homology vs Protein 
Query= Contig-U01567-1 (Contig-U01567-1Q) /CSM_Contig/Contig-U01567-1Q.Seq.d
         (446 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT087766_1(BT087766|pid:none) Zea mays full-length cDNA clone ZM...    34   1.4
CP001574_66(CP001574|pid:none) Micromonas sp. RCC299 chromosome ...    34   1.4
BT083745_1(BT083745|pid:none) Zea mays full-length cDNA clone ZM...    32   9.2
EU960748_1(EU960748|pid:none) Zea mays clone 228240 cysteine-typ...    32   9.2

>BT087766_1(BT087766|pid:none) Zea mays full-length cDNA clone
           ZM_BFb0193H07 mRNA, complete cds.
           &EU955938_1(EU955938|pid:none)
          Length = 228

 Score = 34.3 bits (77), Expect = 1.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 17  KWGEYCNEMSKDGKWGDQLNFLGGGEKFGSK 109
           K+  YC +M K G+WGD +      +KF +K
Sbjct: 139 KYKHYCKKMKKYGEWGDHVTLQAAADKFAAK 169

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 463,393,973
Number of extensions: 7288757
Number of successful extensions: 42243
Number of sequences better than 10.0: 4
Number of HSP's gapped: 42243
Number of HSP's successfully gapped: 4
Length of query: 148
Length of database: 1,051,180,864
Length adjustment: 110
Effective length of query: 38
Effective length of database: 695,159,374
Effective search space: 26416056212
Effective search space used: 26416056212
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
PSORT 

 psg: 0.49  gvh: 0.40  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: vacuolar
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U01567-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0