Contig-U09379-1
Contig ID Contig-U09379-1
Contig update 2002. 9.13
Contig sequence
>Contig-U09379-1 (Contig-U09379-1Q) /CSM_Contig/Contig-U09379-1Q.Seq.d
AAAAATTTTTTAAACTAAAAAATAAAAAAAATAAATAAAAAAAAAAAAAA
AAAAACAAAAATGTCATATAAAATAATAAACAGCTCCGATGACGACAATG
ATAATAATAATAACAATGATATAAATAACAATGAGAATATTATTAGAGAA
GAAGAAAAGAATAAAACACTACCAAATTCGCCAATCCAAACAGATGAACA
AAAAAAGAAACAAACATTATCAATTAATATTATGGTTTTAACCGTATTTT
TACAAAGTATTGGATTTACATTAATTTTACCATCAATGTTGAATTATTTA
AATTCAAACGATCCACAATTTAAGAGATATTTCGGATACATTGTAGCATT
ATATAGTTTAGGACAATTTTTAGGATCACCTTTATTTGGTAAATGGAGTA
ATAAAAGAGCAGCATCTGAACCAGTAGTAATCTCAATTGTAATCTCCATC
ATTGGTTCGATATTCTATTCAATTTGTTATAAATTCCATGGATTTGCATT
CCCAGCAATTATGGGTACCGCCAGATTCATCGTTGGGTTCGGTGCTGGAA
ATGTGTCAGTGTGTCGTGCATATGCCACTGAGACTGCCACAATTGAAAAT
AAAACTCAAATTATGGGAAAAATGAGTGGTGCACAAGGCGCAGGGTTCGT
CTTGGGACCTGGTATCGGGTTCTTATTAAACTTTTGCAATTTCACCATTG
GTCA----------ATAAATAATAAATAATAATAGTAATAATAAAGCAAT
TAATTTATAAATTATAAATTATAATAGTAATTTTAAAAAATAAAACAACC
ACATTTTAAAAATTTAAAAATAATAATAAAAGTGAATATTATAATATTAT
AATCTTTTTGGTATAATTGAAAAAGATCAATAATATATTAAAATTTCCAA
AAAAAAAAA

Gap gap included
Contig length 899
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 1392012
End point 1392912
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U09379
List of clone(s)

est1=SSF127F,1,705
est2=SSF127Z,706,901
Translated Amino Acid sequence
knfln*KIKKINKKKKKKTKMSYKIINSSDDDNDNNNNNDINNNENIIREEEKNKTLPNS
PIQTDEQKKKQTLSINIMVLTVFLQSIGFTLILPSMLNYLNSNDPQFKRYFGYIVALYSL
GQFLGSPLFGKWSNKRAASEPVVISIVISIIGSIFYSICYKFHGFAFPAIMGTARFIVGF
GAGNVSVCRAYATETATIENKTQIMGKMSGAQGAGFVLGPGIGFLLNFCNFTIG---

---INNK******sn*finykl***f*kikqphfknlkiiikvniiil*sfwyn*krsii
y*nfqkkk


Translated Amino Acid sequence (All Frames)
Frame A:
knfln*KIKKINKKKKKKTKMSYKIINSSDDDNDNNNNNDINNNENIIREEEKNKTLPNS
PIQTDEQKKKQTLSINIMVLTVFLQSIGFTLILPSMLNYLNSNDPQFKRYFGYIVALYSL
GQFLGSPLFGKWSNKRAASEPVVISIVISIIGSIFYSICYKFHGFAFPAIMGTARFIVGF
GAGNVSVCRAYATETATIENKTQIMGKMSGAQGAGFVLGPGIGFLLNFCNFTIG---

---INNK******sn*finykl***f*kikqphfknlkiiikvniiil*sfwyn*krsii
y*nfqkkk

Frame B:
kif*tkk*kk*ikkkkkkqkchik**tapmttmiiiitmi*itmrillekkkrikhyqir
qskqmnkkrnkhyqlilwf*pyfykvldlh*fyhqc*ii*iqtihnlrdisdtl*hyiv*
dnf*dhlylvngvikeqhlnq**sql*spslvrysiqfvinsmdlhsqqlwvppdsslgs
vlemcqcvvhmplrlpqlkiklklwek*vvhkaqgsswdlvsgsy*tfaisplv---

---*iinnnsnnkainl*iinynsnfkk*nnhilki*k***k*il*yynlfgiiekdq*y
ikiskkk

Frame C:
kffklknkknk*kkkkknknvi*nnkqlr*rq*****q*yk*q*eyy*rrrke*nttkfa
npnr*tkketniin*yygfnriftkywiyinftinvelfkfkrsti*eifrihcsii*fr
tifritfiw*me**kssi*tssnlncnlhhwfdilfnll*ipwicipsnygyrqihrwvr
cwkcvsvscich*dchn*k*nsnygknewctrrrvrlgtwyrvlikllqfhhws---

---k**iiiviikqliykl*iiivilknktttf*kfknnnkseyyniiiflv*lkkinni
lkfpkkk

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U09379-1 (Contig-U09379-1Q)
/CSM_Contig/Contig-U09379-1Q.Seq.d
(909 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U09379-1 (Contig-U09379-1Q) /CSM_Contig/Conti... 1233 0.0
Contig-U11262-1 (Contig-U11262-1Q) /CSM_Contig/Conti... 50 4e-06
Contig-U05351-1 (Contig-U05351-1Q) /CSM_Contig/Conti... 48 2e-05
Contig-U09125-1 (Contig-U09125-1Q) /CSM_Contig/Conti... 46 7e-05
Contig-U11145-1 (Contig-U11145-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U03583-1 (Contig-U03583-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U11928-1 (Contig-U11928-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U11485-1 (Contig-U11485-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U11260-1 (Contig-U11260-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U03229-1 (Contig-U03229-1Q) /CSM_Contig/Conti... 38 0.016

>Contig-U09379-1 (Contig-U09379-1Q) /CSM_Contig/Contig-U09379-1Q.Seq.d
Length = 909

Score = 1233 bits (622), Expect = 0.0
Identities = 636/643 (98%)
Strand = Plus / Plus


Query: 62 tgtcatataaaataataaacagctccgatgacgacaatgataataataataacaatgata 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tgtcatataaaataataaacagctccgatgacgacaatgataataataataacaatgata 121


Query: 122 taaataacaatgagaatattattagagaagaagaaaagaataaaacactaccaaattcgc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 taaataacaatgagaatattattagagaagaagaaaagaataaaacactaccaaattcgc 181


Query: 182 caatccaaacagatgaacnnnnnnngaaacaaacattatcaattaatattatggttttaa 241
|||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 182 caatccaaacagatgaacaaaaaaagaaacaaacattatcaattaatattatggttttaa 241


Query: 242 ccgtatttttacaaagtattggatttacattaattttaccatcaatgttgaattatttaa 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ccgtatttttacaaagtattggatttacattaattttaccatcaatgttgaattatttaa 301


Query: 302 attcaaacgatccacaatttaagagatatttcggatacattgtagcattatatagtttag 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 attcaaacgatccacaatttaagagatatttcggatacattgtagcattatatagtttag 361


Query: 362 gacaatttttaggatcacctttatttggtaaatggagtaataaaagagcagcatctgaac 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gacaatttttaggatcacctttatttggtaaatggagtaataaaagagcagcatctgaac 421


Query: 422 cagtagtaatctcaattgtaatctccatcattggttcgatattctattcaatttgttata 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 cagtagtaatctcaattgtaatctccatcattggttcgatattctattcaatttgttata 481


Query: 482 aattccatggatttgcattcccagcaattatgggtaccgccagattcatcgttgggttcg 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aattccatggatttgcattcccagcaattatgggtaccgccagattcatcgttgggttcg 541


Query: 542 gtgctggaaatgtgtcagtgtgtcgtgcatatgccactgagactgccacaattgaaaata 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gtgctggaaatgtgtcagtgtgtcgtgcatatgccactgagactgccacaattgaaaata 601


Query: 602 aaactcaaattatgggaaaaatgagtggtgcacaaggcgcagggttcgtcttgggacctg 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 aaactcaaattatgggaaaaatgagtggtgcacaaggcgcagggttcgtcttgggacctg 661


Query: 662 gtatcgggttcttattaaacttttgcaatttcaccattggtca 704
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gtatcgggttcttattaaacttttgcaatttcaccattggtca 704


Score = 133 bits (67), Expect = 4e-31
Identities = 67/67 (100%)
Strand = Plus / Plus


Query: 832 gtgaatattataatattataatctttttggtataattgaaaaagatcaataatatattaa 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 gtgaatattataatattataatctttttggtataattgaaaaagatcaataatatattaa 891


Query: 892 aatttcc 898
|||||||
Sbjct: 892 aatttcc 898


Score = 32.2 bits (16), Expect = 1.00
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 1 aaaaattttttaaact 16
||||||||||||||||
Sbjct: 1 aaaaattttttaaact 16


Score = 32.2 bits (16), Expect = 1.00
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 838 attataatattataat 853
||||||||||||||||
Sbjct: 853 attataatattataat 838


>Contig-U11262-1 (Contig-U11262-1Q) /CSM_Contig/Contig-U11262-1Q.Seq.d
Length = 1722

Score = 50.1 bits (25), Expect = 4e-06
Identities = 43/49 (87%)
Strand = Plus / Plus


Query: 97 aatgataataataataacaatgatataaataacaatgagaatattatta 145
||||||||||||||||| ||| ||| ||||||||||| |||| |||||
Sbjct: 1395 aatgataataataataataataataataataacaatgataataatatta 1443


Score = 36.2 bits (18), Expect = 0.064
Identities = 24/26 (92%)
Strand = Plus / Plus


Query: 95 acaatgataataataataacaatgat 120
||||||||||||||| |||| |||||
Sbjct: 1426 acaatgataataatattaacgatgat 1451


>Contig-U05351-1 (Contig-U05351-1Q) /CSM_Contig/Contig-U05351-1Q.Seq.d
Length = 295

Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus


Query: 97 aatgataataataataacaatgatataaataacaat 132
||||||||||||||||| ||| ||| ||||||||||
Sbjct: 114 aatgataataataataataataataaaaataacaat 149


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,897
Number of Sequences: 6905
Number of extensions: 27897
Number of successful extensions: 9703
Number of sequences better than 10.0: 895
length of query: 909
length of database: 5,674,871
effective HSP length: 16
effective length of query: 893
effective length of database: 5,564,391
effective search space: 4969001163
effective search space used: 4969001163
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.15
Homology vs DNA
Query= Contig-U09379-1 (Contig-U09379-1Q) /CSM_Contig/Contig-U09379-1Q.Seq.d
(909 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AC115607) Dictyostelium discoideum chromosome 2 map 4559693... 987 0.0 3
(AU072805) Dictyostelium discoideum slug cDNA, clone SSF127. 70 4e-22 2
(C92719) Dictyostelium discoideum slug cDNA, clone SSF127. 48 0.58 1
(AJ293726) Brassica napus homologue of AT4g29030 gene, homol... 46 2.3 1
(AC111370) Rattus norvegicus clone CH230-79E6, *** SEQUENCIN... 46 2.3 1
(EU139067) Solanum lycopersicum chromosome 9 clone C09HBa002... 46 2.3 1
(DX393802) GE__Sa0062E04.b1 Gossypium exiguum WGS library Go... 46 2.3 1
(DX237258) OR_ABa0119N17.f OR_ABa Oryza ridleyi genomic clon... 46 2.3 1
(CK859384) VFCP-25E9 Flower bud of Phalaenopsis violacea Pha... 46 2.3 1
(CP000117) Anabaena variabilis ATCC 29413, complete genome. 46 2.3 1
(AL845504) Mouse DNA sequence from clone RP23-297M18 on chro... 44 9.1 1
(DQ158857) Bigelowiella natans nucleomorph chromosome 2, com... 44 9.1 1
(AC126319) Mus musculus clone RP24-401K19, WORKING DRAFT SEQ... 44 9.1 1
(AC223922) Bos taurus clone CH240-454C7, WORKING DRAFT SEQUE... 44 9.1 1
(AC182952) Bos taurus clone CH240-281D21, WORKING DRAFT SEQU... 44 9.1 1
(EJ929317) 1093018797671 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.1 1
(EJ497606) 1095403583237 Global-Ocean-Sampling_GS-28-01-01-1... 44 9.1 1
(AC140913) Medicago truncatula clone mth2-26h9, complete seq... 38 9.3 3

>(AC115607) Dictyostelium discoideum chromosome 2 map 4559693-4624405
strain AX4, complete sequence.
Length = 64707

Score = 987 bits (498), Expect(3) = 0.0
Identities = 498/498 (100%)
Strand = Plus / Plus


Query: 207 gaaacaaacattatcaattaatattatggttttaaccgtatttttacaaagtattggatt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7895 gaaacaaacattatcaattaatattatggttttaaccgtatttttacaaagtattggatt 7954


Query: 267 tacattaattttaccatcaatgttgaattatttaaattcaaacgatccacaatttaagag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7955 tacattaattttaccatcaatgttgaattatttaaattcaaacgatccacaatttaagag 8014


Query: 327 atatttcggatacattgtagcattatatagtttaggacaatttttaggatcacctttatt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8015 atatttcggatacattgtagcattatatagtttaggacaatttttaggatcacctttatt 8074


Query: 387 tggtaaatggagtaataaaagagcagcatctgaaccagtagtaatctcaattgtaatctc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8075 tggtaaatggagtaataaaagagcagcatctgaaccagtagtaatctcaattgtaatctc 8134


Query: 447 catcattggttcgatattctattcaatttgttataaattccatggatttgcattcccagc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8135 catcattggttcgatattctattcaatttgttataaattccatggatttgcattcccagc 8194


Query: 507 aattatgggtaccgccagattcatcgttgggttcggtgctggaaatgtgtcagtgtgtcg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8195 aattatgggtaccgccagattcatcgttgggttcggtgctggaaatgtgtcagtgtgtcg 8254


Query: 567 tgcatatgccactgagactgccacaattgaaaataaaactcaaattatgggaaaaatgag 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8255 tgcatatgccactgagactgccacaattgaaaataaaactcaaattatgggaaaaatgag 8314


Query: 627 tggtgcacaaggcgcagggttcgtcttgggacctggtatcgggttcttattaaacttttg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8315 tggtgcacaaggcgcagggttcgtcttgggacctggtatcgggttcttattaaacttttg 8374


Query: 687 caatttcaccattggtca 704
||||||||||||||||||
Sbjct: 8375 caatttcaccattggtca 8392

Score = 69.9 bits (35), Expect(3) = 0.0
Identities = 35/35 (100%)
Strand = Plus / Plus


Query: 165 aacactaccaaattcgccaatccaaacagatgaac 199
|||||||||||||||||||||||||||||||||||
Sbjct: 7853 aacactaccaaattcgccaatccaaacagatgaac 7887

Score = 48.1 bits (24), Expect(3) = 0.0
Identities = 24/24 (100%)
Strand = Plus / Plus


Query: 875 gatcaataatatattaaaatttcc 898
||||||||||||||||||||||||
Sbjct: 9498 gatcaataatatattaaaatttcc 9521

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 643,566,227
Number of extensions: 37020804
Number of successful extensions: 3041700
Number of sequences better than 10.0: 18
Length of query: 909
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 885
Effective length of database: 97,308,875,965
Effective search space: 86118355229025
Effective search space used: 86118355229025
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.25
Homology vs Protein
Query= Contig-U09379-1 (Contig-U09379-1Q) /CSM_Contig/Contig-U09379-1Q.Seq.d
(909 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC115607_3(AC115607|pid:none) Dictyostelium discoideum chromosom... 347 2e-94
(Q0VA82) RecName: Full=Major facilitator superfamily domain-cont... 110 7e-23
(Q8NHS3) RecName: Full=Major facilitator superfamily domain-cont... 107 7e-22
CR858886_1(CR858886|pid:none) Pongo abelii mRNA; cDNA DKFZp469E1... 105 2e-21
AK013144_1(AK013144|pid:none) Mus musculus 10, 11 days embryo wh... 105 2e-21
(Q6GPQ3) RecName: Full=Major facilitator superfamily domain-cont... 105 3e-21
AK294527_1(AK294527|pid:none) Homo sapiens cDNA FLJ50490 complet... 92 3e-17
AK294957_1(AK294957|pid:none) Homo sapiens cDNA FLJ51842 complet... 89 2e-16
AE014296_1309(AE014296|pid:none) Drosophila melanogaster chromos... 89 3e-16
AY325200_1(AY325200|pid:none) Rattus norvegicus Ab2-276 mRNA, co... 81 6e-14
AC024809_1(AC024809|pid:none) Caenorhabditis elegans cosmid Y53G... 79 3e-13
AK294439_1(AK294439|pid:none) Homo sapiens cDNA FLJ50485 complet... 75 4e-12
T26190(T26190) hypothetical protein W05E10.1 - Caenorhabditis el... 74 5e-12
CP000492_1075(CP000492|pid:none) Chlorobium phaeobacteroides DSM... 72 3e-11
CP000471_3335(CP000471|pid:none) Magnetococcus sp. MC-1, complet... 71 6e-11
T16190(T16190) hypothetical protein F27D9.2 - Caenorhabditis ele... 69 2e-10
CP000096_1119(CP000096|pid:none) Pelodictyon luteolum DSM 273, c... 69 2e-10
CP001110_1128(CP001110|pid:none) Pelodictyon phaeoclathratiforme... 68 4e-10
CP001099_1195(CP001099|pid:none) Chlorobaculum parvum NCIB 8327,... 68 5e-10
AE006470_982(AE006470|pid:none) Chlorobium tepidum TLS, complete... 66 1e-09
CP001131_140(CP001131|pid:none) Anaeromyxobacter sp. K, complete... 64 5e-09
CP000251_132(CP000251|pid:none) Anaeromyxobacter dehalogenans 2C... 64 5e-09
CT027646_5(CT027646|pid:none) Zebrafish DNA sequence from clone ... 63 2e-08
CP001100_2555(CP001100|pid:none) Chloroherpeton thalassium ATCC ... 62 2e-08
AE016879_780(AE016879|pid:none) Bacillus anthracis str. Ames, co... 62 3e-08
CP000001_716(CP000001|pid:none) Bacillus cereus E33L, complete g... 62 3e-08
CP000485_715(CP000485|pid:none) Bacillus thuringiensis str. Al H... 62 3e-08
CP001177_849(CP001177|pid:none) Bacillus cereus AH187, complete ... 62 3e-08
AE017355_728(AE017355|pid:none) Bacillus thuringiensis serovar k... 62 3e-08
BX842647_256(BX842647|pid:none) Bdellovibrio bacteriovorus compl... 62 3e-08
BC123919_1(BC123919|pid:none) Xenopus tropicalis hypothetical pr... 62 3e-08
CP000903_739(CP000903|pid:none) Bacillus weihenstephanensis KBAB... 62 3e-08
CR855509_1(CR855509|pid:none) Xenopus tropicalis finished cDNA, ... 62 3e-08
AE016877_732(AE016877|pid:none) Bacillus cereus ATCC 14579, comp... 61 5e-08
CP001186_742(CP001186|pid:none) Bacillus cereus G9842, complete ... 61 6e-08
CP000769_135(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, co... 61 6e-08
AP009153_426(AP009153|pid:none) Gemmatimonas aurantiaca T-27 DNA... 61 6e-08
AE017194_923(AE017194|pid:none) Bacillus cereus ATCC 10987, comp... 60 8e-08
AK294184_1(AK294184|pid:none) Homo sapiens cDNA FLJ50474 complet... 60 1e-07
AM398681_2345(AM398681|pid:none) Flavobacterium psychrophilum JI... 60 1e-07
AB126616_10(AB126616|pid:none) Geobacillus stearothermophilus ge... 59 2e-07
BA000045_1490(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ... 59 3e-07
CP000227_822(CP000227|pid:none) Bacillus cereus Q1, complete gen... 59 3e-07
BC084657_1(BC084657|pid:none) Xenopus laevis hypothetical LOC495... 58 4e-07
CP000151_666(CP000151|pid:none) Burkholderia sp. 383 chromosome ... 58 4e-07
AJ245947_2(AJ245947|pid:none) Pasteurella aerogenes plasmid pPAT... 57 7e-07
CP001172_384(CP001172|pid:none) Acinetobacter baumannii AB307-02... 57 7e-07
CP001182_3454(CP001182|pid:none) Acinetobacter baumannii AB0057,... 57 7e-07
CP000947_1700(CP000947|pid:none) Haemophilus somnus 2336, comple... 57 7e-07
AM992204_8(AM992204|pid:none) Psychrobacter psychrophilus transp... 57 7e-07
CP000521_3416(CP000521|pid:none) Acinetobacter baumannii ATCC 17... 57 7e-07
CT025784_1(CT025784|pid:none) Acinetobacter baumannii str. AYE. ... 57 7e-07
CP001365_2616(CP001365|pid:none) Halorubrum lacusprofundi ATCC 4... 57 7e-07
CP001191_675(CP001191|pid:none) Rhizobium leguminosarum bv. trif... 57 9e-07
AM114193_517(AM114193|pid:none) Uncultured methanogenic archaeon... 57 1e-06
AP008955_1535(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 57 1e-06
AM942759_2376(AM942759|pid:none) Proteus mirabilis strain HI4320... 57 1e-06
CP000099_796(CP000099|pid:none) Methanosarcina barkeri str. Fusa... 56 2e-06
(P51564) RecName: Full=Tetracycline resistance protein, class H;... 56 2e-06
AP008955_5059(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 56 2e-06
AP008231_2063(AP008231|pid:none) Synechococcus elongatus PCC 630... 55 2e-06
EF591887_1(EF591887|pid:none) Uncultured planctomycete 6FN clone... 55 3e-06
BA000040_3850(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 55 3e-06
CP001074_1105(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 55 3e-06
CP000416_384(CP000416|pid:none) Lactobacillus brevis ATCC 367, c... 55 3e-06
AE010299_168(AE010299|pid:none) Methanosarcina acetivorans str. ... 55 3e-06
AJ487672_1(AJ487672|pid:none) Acinetobacter sp. L32 partial tetH... 55 4e-06
CP000633_609(CP000633|pid:none) Agrobacterium vitis S4 chromosom... 55 4e-06
CP000077_1977(CP000077|pid:none) Sulfolobus acidocaldarius DSM 6... 55 4e-06
AM406671_317(AM406671|pid:none) Lactococcus lactis subsp. cremor... 55 4e-06
AM398681_2083(AM398681|pid:none) Flavobacterium psychrophilum JI... 54 6e-06
CP000394_1050(CP000394|pid:none) Granulibacter bethesdensis CGDN... 54 6e-06
CP000113_2475(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 54 6e-06
AY197571_6(AY197571|pid:none) Myxococcus xanthus isolate C274/70... 54 6e-06
CP000554_2967(CP000554|pid:none) Prochlorococcus marinus str. MI... 54 7e-06
CP000133_1006(CP000133|pid:none) Rhizobium etli CFN 42, complete... 54 9e-06
CP000804_807(CP000804|pid:none) Roseiflexus castenholzii DSM 139... 54 9e-06
CP000494_3550(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 54 9e-06
CP001338_1292(CP001338|pid:none) Candidatus Methanosphaerula pal... 53 2e-05
AJ250203_3(AJ250203|pid:none) Aeromonas salmonicida plasmid pRAS... 53 2e-05
AM114193_702(AM114193|pid:none) Uncultured methanogenic archaeon... 53 2e-05
CP001191_2677(CP001191|pid:none) Rhizobium leguminosarum bv. tri... 53 2e-05
CP001337_2267(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 53 2e-05
CP000817_3360(CP000817|pid:none) Lysinibacillus sphaericus C3-41... 53 2e-05
AE014297_3042(AE014297|pid:none) Drosophila melanogaster chromos... 52 2e-05
CP000133_2923(CP000133|pid:none) Rhizobium etli CFN 42, complete... 52 2e-05
AF016679_5(AF016679|pid:none) Caenorhabditis elegans cosmid T28C... 52 2e-05
CP001280_858(CP001280|pid:none) Methylocella silvestris BL2, com... 52 2e-05
CP000359_526(CP000359|pid:none) Deinococcus geothermalis DSM 113... 52 2e-05
CP001074_3087(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 52 3e-05
CP000383_264(CP000383|pid:none) Cytophaga hutchinsonii ATCC 3340... 52 3e-05
T20885(T20885)hypothetical protein F14D7.6 - Caenorhabditis eleg... 52 4e-05
CP000557_1422(CP000557|pid:none) Geobacillus thermodenitrificans... 52 4e-05
CP000629_2338(CP000629|pid:none) Agrobacterium radiobacter K84 c... 52 4e-05
CP001022_184(CP001022|pid:none) Exiguobacterium sibiricum 255-15... 52 4e-05
AE008384_1465(AE008384|pid:none) Methanosarcina mazei strain Goe... 52 4e-05
BX294134_201(BX294134|pid:none) Rhodopirellula baltica SH 1 comp... 51 5e-05
AF016679_6(AF016679|pid:none) Caenorhabditis elegans cosmid T28C... 51 6e-05
CP001186_2264(CP001186|pid:none) Bacillus cereus G9842, complete... 51 6e-05
T22940(T22940) hypothetical protein F58G11.4 - Caenorhabditis el... 50 8e-05
BX569695_303(BX569695|pid:none) Synechococcus sp. WH8102 complet... 50 8e-05
AF467078_1(AF467078|pid:none) Shigella flexneri strain SH4 tetra... 50 8e-05
CP000909_1543(CP000909|pid:none) Chloroflexus aurantiacus J-10-f... 50 8e-05
CP000250_2442(CP000250|pid:none) Rhodopseudomonas palustris HaA2... 50 8e-05
AE008384_2331(AE008384|pid:none) Methanosarcina mazei strain Goe... 50 8e-05
(P33733) RecName: Full=Tetracycline resistance protein, class D;... 50 8e-05
CP000699_4799(CP000699|pid:none) Sphingomonas wittichii RW1, com... 50 8e-05
AE005176_306(AE005176|pid:none) Lactococcus lactis subsp. lactis... 50 8e-05
AE017194_2485(AE017194|pid:none) Bacillus cereus ATCC 10987, com... 50 1e-04
CP000553_2169(CP000553|pid:none) Prochlorococcus marinus str. NA... 50 1e-04
CP000348_1603(CP000348|pid:none) Leptospira borgpetersenii serov... 50 1e-04
AJ000346_2(AJ000346|pid:none) Enterococcus hirae napB and napC g... 50 1e-04
AJ429231_4(AJ429231|pid:none) Enterococcus hirae ftsW gene, psr ... 50 1e-04
CP000095_2138(CP000095|pid:none) Prochlorococcus marinus str. NA... 50 1e-04
AE005176_123(AE005176|pid:none) Lactococcus lactis subsp. lactis... 50 1e-04
AJ749949_444(AJ749949|pid:none) Francisella tularensis subsp. tu... 50 1e-04
AM233362_1621(AM233362|pid:none) Francisella tularensis subsp. h... 50 1e-04
CP000828_2474(CP000828|pid:none) Acaryochloris marina MBIC11017,... 50 1e-04
AE000513_458(AE000513|pid:none) Deinococcus radiodurans R1 chrom... 50 1e-04
CP000608_1310(CP000608|pid:none) Francisella tularensis subsp. t... 50 1e-04
CP000439_519(CP000439|pid:none) Francisella tularensis subsp. no... 50 1e-04
FM211058_11(FM211058|pid:none) Photorhabdus asymbiotica subsp. a... 49 2e-04
AM086635_1(AM086635|pid:none) Acinetobacter baumannii partial te... 49 2e-04
BA000004_1775(BA000004|pid:none) Bacillus halodurans C-125 DNA, ... 49 2e-04
AY428550_5(AY428550|pid:none) Chlamydia suis strain R19 invasin-... 49 2e-04
AP008230_2063(AP008230|pid:none) Desulfitobacterium hafniense Y5... 49 2e-04
Y19115_1(Y19115|pid:none) Aeromonas liquefaciens partial plasmid... 49 2e-04
CP001336_3175(CP001336|pid:none) Desulfitobacterium hafniense DC... 49 2e-04
BA000040_4054(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 49 3e-04
CP000301_2255(CP000301|pid:none) Rhodopseudomonas palustris BisB... 49 3e-04
AE010299_1308(AE010299|pid:none) Methanosarcina acetivorans str.... 49 3e-04
CP000524_913(CP000524|pid:none) Bartonella bacilliformis KC583, ... 48 4e-04
CU234118_3091(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl... 48 4e-04
(P02981) RecName: Full=Tetracycline resistance protein, class C;... 48 5e-04
U46855_1(U46855|pid:none) Cloning vector pAS1-tet tetracycline r... 48 5e-04
BC093169_1(BC093169|pid:none) Danio rerio zgc:112042, mRNA (cDNA... 48 5e-04
AY428551_2(AY428551|pid:none) Chlamydia suis strain R27 tetR(C)-... 48 5e-04
AB089596_1(AB089596|pid:none) Gram-negative bacterium TA57 tetC ... 48 5e-04
CT978603_2502(CT978603|pid:none) Synechococcus sp. RCC307 genomi... 48 5e-04
AF521666_1(AF521666|pid:none) Cloning vector pLOI2065 complete s... 48 5e-04
AE016877_2255(AE016877|pid:none) Bacillus cereus ATCC 14579, com... 48 5e-04
EU284107_1(EU284107|pid:none) Cloning vector pCV9, complete sequ... 48 5e-04
AP009241_11(AP009241|pid:none) Escherichia coli SE11 plasmid pSE... 48 5e-04
AY046276_55(AY046276|pid:none) IncN plasmid R46, complete sequen... 48 5e-04
AE016823_2293(AE016823|pid:none) Leptospira interrogans serovar ... 47 7e-04
BX571865_128(BX571865|pid:none) Photorhabdus luminescens subsp. ... 47 7e-04
CP000158_488(CP000158|pid:none) Hyphomonas neptunium ATCC 15444,... 47 7e-04
CP001176_2287(CP001176|pid:none) Bacillus cereus B4264, complete... 47 7e-04
CP000463_3315(CP000463|pid:none) Rhodopseudomonas palustris BisA... 47 7e-04
CP001013_2053(CP001013|pid:none) Leptothrix cholodnii SP-6, comp... 47 9e-04
AB3073(AB3073) tetracycline resistance protein [imported] - Agro... 47 9e-04
CP000348_783(CP000348|pid:none) Leptospira borgpetersenii serova... 47 9e-04
CP000937_294(CP000937|pid:none) Francisella philomiragia subsp. ... 47 9e-04
AE010300_1932(AE010300|pid:none) Leptospira interrogans serovar ... 47 0.001
AY043298_4(AY043298|pid:none) Aeromonas salmonicida subsp. salmo... 47 0.001
BA000039_139(BA000039|pid:none) Thermosynechococcus elongatus BP... 47 0.001
AE017333_3274(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 47 0.001
AE001437_751(AE001437|pid:none) Clostridium acetobutylicum ATCC ... 46 0.002
CP001615_788(CP001615|pid:none) Exiguobacterium sp. AT1b, comple... 46 0.002
CP000777_2187(CP000777|pid:none) Leptospira biflexa serovar Pato... 46 0.002
AB450045_9(AB450045|pid:none) Vibrio cholerae O1 biovar El tor S... 46 0.002
AM270154_6(AM270154|pid:none) Aspergillus niger contig An07c0370... 46 0.002
AP009484_182(AP009484|pid:none) Macrococcus caseolyticus JCSC540... 46 0.002
CP000359_1486(CP000359|pid:none) Deinococcus geothermalis DSM 11... 45 0.003
CP001344_973(CP001344|pid:none) Cyanothece sp. PCC 7425, complet... 45 0.003
AE000513_2125(AE000513|pid:none) Deinococcus radiodurans R1 chro... 45 0.003
AP008230_1334(AP008230|pid:none) Desulfitobacterium hafniense Y5... 45 0.003
AF1536(AF1536) Tetracycline resistance protein homolog lin0830 [... 45 0.003
AE017262_846(AE017262|pid:none) Listeria monocytogenes str. 4b F... 45 0.003
CP000560_2840(CP000560|pid:none) Bacillus amyloliquefaciens FZB4... 45 0.003
AE009441_1786(AE009441|pid:none) Pyrobaculum aerophilum str. IM2... 45 0.003
Y19116_1(Y19116|pid:none) Escherichia coli partial plasmid tetE ... 45 0.004
AE016830_995(AE016830|pid:none) Enterococcus faecalis V583, comp... 45 0.004
BX572603_10(BX572603|pid:none) Rhodopseudomonas palustris CGA009... 45 0.004
AB091338_1(AB091338|pid:none) Enterococcus faecalis emeA gene fo... 45 0.004
CP000817_4130(CP000817|pid:none) Lysinibacillus sphaericus C3-41... 45 0.004
CP000830_999(CP000830|pid:none) Dinoroseobacter shibae DFL 12, c... 45 0.004
CP000803_1708(CP000803|pid:none) Francisella tularensis subsp. h... 44 0.006
CP001096_3442(CP001096|pid:none) Rhodopseudomonas palustris TIE-... 44 0.006
CP000586_19(CP000586|pid:none) Ostreococcus lucimarinus CCE9901 ... 44 0.006
CP000697_2871(CP000697|pid:none) Acidiphilium cryptum JF-5, comp... 44 0.007
AF121000_11(AF121000|pid:none) Corynebacterium glutamicum strain... 44 0.010
CP000081_274(CP000081|pid:none) Leishmania major chromosome 35, ... 43 0.013
CP000758_1666(CP000758|pid:none) Ochrobactrum anthropi ATCC 4918... 43 0.013
AL929353_7(AL929353|pid:none) Plasmodium falciparum strain 3D7, ... 43 0.013
AM114193_197(AM114193|pid:none) Uncultured methanogenic archaeon... 43 0.013
AC141435_10(AC141435|pid:none) Medicago truncatula clone mth2-21... 43 0.013
CP001324_94(CP001324|pid:none) Micromonas sp. RCC299 chromosome ... 43 0.017
(Q6GIU7) RecName: Full=Quinolone resistance protein norA; &BX57... 43 0.017
AG1741(AG1741) multi-drug resistance efflux pump homolog lin2476... 43 0.017
(Q5HHX4) RecName: Full=Quinolone resistance protein norA; &AP00... 42 0.022
AP007281_1434(AP007281|pid:none) Lactobacillus reuteri JCM 1112 ... 42 0.022
AI1371(AI1371) multi-drug resistance efflux pump homolog lmo2377... 42 0.022
CP001068_1685(CP001068|pid:none) Ralstonia pickettii 12J chromos... 42 0.022
CP000705_1494(CP000705|pid:none) Lactobacillus reuteri DSM 20016... 42 0.022
(Q6GBD5) RecName: Full=Quinolone resistance protein norA; &BX57... 42 0.022
AM295250_339(AM295250|pid:none) Staphylococcus carnosus subsp. c... 42 0.022
CP000356_2755(CP000356|pid:none) Sphingopyxis alaskensis RB2256,... 42 0.022
CT030738_2(CT030738|pid:none) Zebrafish DNA sequence from clone ... 42 0.028
CP001150_567(CP001150|pid:none) Rhodobacter sphaeroides KD131 ch... 42 0.028
CP001364_377(CP001364|pid:none) Chloroflexus sp. Y-400-fl, compl... 42 0.028
CU928144_40(CU928144|pid:none) Escherichia fergusonii str. ATCC ... 42 0.028
CP000661_2225(CP000661|pid:none) Rhodobacter sphaeroides ATCC 17... 42 0.028
CP001114_1033(CP001114|pid:none) Deinococcus deserti VCD115, com... 42 0.028
CP000152_1013(CP000152|pid:none) Burkholderia sp. 383 chromosome... 42 0.037
AM502253_262(AM502253|pid:none) Leishmania infantum chromosome 35. 42 0.037
CP000248_3293(CP000248|pid:none) Novosphingobium aromaticivorans... 42 0.037
M80252_1(M80252|pid:none) Staphylococcus aureus norA1199 gene (w... 41 0.048
CP000557_278(CP000557|pid:none) Geobacillus thermodenitrificans ... 41 0.048
CP000500_291(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 41 0.048
AJ938182_644(AJ938182|pid:none) Staphylococcus aureus RF122 comp... 41 0.048
CP000703_708(CP000703|pid:none) Staphylococcus aureus subsp. aur... 41 0.063
CP000577_914(CP000577|pid:none) Rhodobacter sphaeroides ATCC 170... 41 0.063
CP000282_3717(CP000282|pid:none) Saccharophagus degradans 2-40, ... 41 0.063
CP000379_637(CP000379|pid:none) Burkholderia cenocepacia AU 1054... 40 0.083
AB084245_1(AB084245|pid:none) Neisseria meningitidis tetB gene f... 40 0.083
CP000561_1910(CP000561|pid:none) Pyrobaculum calidifontis JCM 11... 40 0.083
AY351675_6(AY351675|pid:none) Enterococcus faecium isolate 664.1... 40 0.11
AE015929_466(AE015929|pid:none) Staphylococcus epidermidis ATCC ... 40 0.11
EF646764_8(EF646764|pid:none) Escherichia coli Sul2 (sul2) gene,... 40 0.14
(P02980) RecName: Full=Tetracycline resistance protein, class B;... 40 0.14
(Q14728) RecName: Full=Major facilitator superfamily domain-cont... 40 0.14
AY528506_2(AY528506|pid:none) Escherichia coli transposon Tn10 t... 40 0.14
AB366440_86(AB366440|pid:none) Salmonella enterica subsp. enteri... 40 0.14
CP000561_187(CP000561|pid:none) Pyrobaculum calidifontis JCM 115... 40 0.14
AB089590_1(AB089590|pid:none) Gram-negative bacterium TA45 tetB ... 40 0.14
AM039952_4394(AM039952|pid:none) Xanthomonas campestris pv. vesi... 39 0.18
AE008923_4233(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 39 0.18
CP000878_1830(CP000878|pid:none) Prochlorococcus marinus str. MI... 39 0.18
Z66516_4(Z66516|pid:none) Caenorhabditis elegans Cosmid W03C9, c... 39 0.18
CP000774_2011(CP000774|pid:none) Parvibaculum lavamentivorans DS... 39 0.18
AM494971_272(AM494971|pid:none) Leishmania braziliensis chromoso... 39 0.18
BA000016_1604(BA000016|pid:none) Clostridium perfringens str. 13... 39 0.24
CP000312_1539(CP000312|pid:none) Clostridium perfringens SM101, ... 39 0.24
I54353(I54353) tetracycline transporter-like protein - human &L... 39 0.24
CP000246_1816(CP000246|pid:none) Clostridium perfringens ATCC 13... 39 0.24
(Q8C0T7) RecName: Full=Major facilitator superfamily domain-cont... 39 0.24
DQ176855_3(DQ176855|pid:none) Actinobacillus pleuropneumoniae pl... 39 0.31
AM920421_149(AM920421|pid:none) Penicillium chrysogenum Wisconsi... 39 0.31
AF133139_2(AF133139|pid:none) Pseudomonas sp. plasmid pPSTG1 tet... 39 0.31
AE008922_4095(AE008922|pid:none) Xanthomonas campestris pv. camp... 39 0.31
AL162691_8(AL162691|pid:none) Arabidopsis thaliana DNA chromosom... 39 0.31
EU252517_2(EU252517|pid:none) Pasteurella multocida plasmid pB10... 39 0.31
AF374376_12(AF374376|pid:none) Oikopleura dioica clone BAC clone... 38 0.41
AJ621601_1(AJ621601|pid:none) Staphylococcus haemolyticus norA g... 38 0.54
AP000969_13(AP000969|pid:none) Oryza sativa Japonica Group genom... 38 0.54
AK152438_1(AK152438|pid:none) Mus musculus bone marrow macrophag... 37 0.70
(Q9D2V8) RecName: Full=Major facilitator superfamily domain-cont... 37 0.70
AP006627_2160(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, c... 37 0.91
JC5585(JC5585)hypothetical mutant tetracyclin resistance / 3-iso... 37 0.91
FM992693_135(FM992693|pid:none) Candida dubliniensis CD36 chromo... 37 0.91
AC171499_1(AC171499|pid:none) Medicago truncatula clone mth2-157... 37 0.91
AB088224_20(AB088224|pid:none) Streptomyces rochei plasmid pSLA2... 37 0.91
Y19113_1(Y19113|pid:none) Shigella flexneri partial plasmid tetB... 37 0.91
AP008218_177(AP008218|pid:none) Oryza sativa (japonica cultivar-... 37 0.91
CP000075_1705(CP000075|pid:none) Pseudomonas syringae pv. syring... 37 0.91
AX647777_1(AX647777|pid:none) Sequence 1969 from Patent EP1270724. 37 0.91
AE005673_748(AE005673|pid:none) Caulobacter crescentus CB15, com... 37 1.2
AM494971_268(AM494971|pid:none) Leishmania braziliensis chromoso... 37 1.2
CP000413_463(CP000413|pid:none) Lactobacillus gasseri ATCC 33323... 37 1.2
CP000081_278(CP000081|pid:none) Leishmania major chromosome 35, ... 36 1.6
AX066343_1(AX066343|pid:none) Sequence 247 from Patent WO0100804... 36 1.6
AX066345_1(AX066345|pid:none) Sequence 249 from Patent WO0100804. 36 1.6
CP001618_2540(CP001618|pid:none) Beutenbergia cavernae DSM 12333... 36 1.6
CP001175_215(CP001175|pid:none) Listeria monocytogenes HCC23, co... 36 2.0
AP007162_197(AP007162|pid:none) Aspergillus oryzae RIB40 genomic... 36 2.0
AF543419_1(AF543419|pid:none) Oryza sativa (japonica cultivar-gr... 36 2.0
CP001348_2468(CP001348|pid:none) Clostridium cellulolyticum H10,... 36 2.0
AM502253_289(AM502253|pid:none) Leishmania infantum chromosome 35. 36 2.0
AP008218_175(AP008218|pid:none) Oryza sativa (japonica cultivar-... 36 2.0
AM494971_271(AM494971|pid:none) Leishmania braziliensis chromoso... 36 2.0
CR382138_550(CR382138|pid:none) Debaryomyces hansenii strain CBS... 35 2.7
CP001078_1817(CP001078|pid:none) Clostridium botulinum E3 str. A... 35 2.7
AM286690_1414(AM286690|pid:none) Alcanivorax borkumensis SK2, co... 35 2.7
AF030302_1(AF030302|pid:none) Homo sapiens p45-BWR1A (BWR1-A) mR... 35 3.5
CP001337_173(CP001337|pid:none) Chloroflexus aggregans DSM 9485,... 35 3.5
CP000606_1441(CP000606|pid:none) Shewanella loihica PV-4, comple... 35 3.5
EU968485_1(EU968485|pid:none) Zea mays clone 321339 carbohydrate... 35 3.5
DQ489736_59(DQ489736|pid:none) Leuconostoc citreum KM20, complet... 35 3.5
A97314(A97314) probable permease [imported] - Clostridium acetob... 35 4.5
BC079159_1(BC079159|pid:none) Rattus norvegicus solute carrier f... 35 4.5
AF037065_1(AF037065|pid:none) Mus musculus organic cation transp... 34 5.9
CP000618_237(CP000618|pid:none) Burkholderia vietnamiensis G4 pl... 34 5.9
CP000960_283(CP000960|pid:none) Burkholderia cenocepacia MC0-3 c... 34 5.9
CP000813_2771(CP000813|pid:none) Bacillus pumilus SAFR-032, comp... 34 5.9
CP000539_2584(CP000539|pid:none) Acidovorax sp. JS42, complete g... 34 5.9
AE017198_540(AE017198|pid:none) Lactobacillus johnsonii NCC 533,... 34 5.9
CP000499_128(CP000499|pid:none) Pichia stipitis CBS 6054 chromos... 34 5.9
AE016830_960(AE016830|pid:none) Enterococcus faecalis V583, comp... 34 5.9
DQ195074_1(DQ195074|pid:none) Acinetobacter sp. A115 tetracyclin... 34 7.7
EU495989_1(EU495989|pid:none) Stenotrophomonas maltophilia isola... 34 7.7
CP000413_462(CP000413|pid:none) Lactobacillus gasseri ATCC 33323... 34 7.7
AM502253_288(AM502253|pid:none) Leishmania infantum chromosome 35. 34 7.7
(P0A2G3) RecName: Full=Citrate-proton symporter; AltName: Full=C... 34 7.7
EU495987_1(EU495987|pid:none) Cellulosimicrobium cellulans isola... 34 7.7
CP000081_277(CP000081|pid:none) Leishmania major chromosome 35, ... 34 7.7
CP000517_465(CP000517|pid:none) Lactobacillus helveticus DPC 457... 34 7.7
CP000026_1915(CP000026|pid:none) Salmonella enterica subsp. ente... 34 7.7
BT034280_1(BT034280|pid:none) Zea mays full-length cDNA clone ZM... 34 7.7
EU495988_1(EU495988|pid:none) Alcaligenes sp. XW5 tetracycline e... 34 7.7

>AC115607_3(AC115607|pid:none) Dictyostelium discoideum chromosome 2
map 4559693-4624405 strain AX4, complete sequence.
Length = 498

Score = 347 bits (891), Expect = 2e-94
Identities = 173/186 (93%), Positives = 173/186 (93%)
Frame = +1

Query: 145 REEEKNKTLPNSPIQTDEQKKKQTLSINIMVLTVFLQSIGFTLILPSMLNYLNSNDPQFK 324
REEEKNKTLPNSPIQTDEQKKKQTLSINIMVLTVFLQSIGFTLILPSMLNYLNSNDPQFK
Sbjct: 29 REEEKNKTLPNSPIQTDEQKKKQTLSINIMVLTVFLQSIGFTLILPSMLNYLNSNDPQFK 88

Query: 325 RYFGYIVALYSLGQFLGSPLFGKWSNKRAASEPXXXXXXXXXXXXXFYSICYKFHGFAFP 504
RYFGYIVALYSLGQFLGSPLFGKWSNKRAASEP FYSICYKFHGFAFP
Sbjct: 89 RYFGYIVALYSLGQFLGSPLFGKWSNKRAASEPVVISIVISIIGSIFYSICYKFHGFAFP 148

Query: 505 AIMGTARFIVGFGAGNVSVCRAYATETATIENKTQIMGKMSGAQGAGFVLGPGIGFLLNF 684
AIMGTARFIVGFGAGNVSVCRAYATETATIENKTQIMGKMSGAQGAGFVLGPGIGFLLNF
Sbjct: 149 AIMGTARFIVGFGAGNVSVCRAYATETATIENKTQIMGKMSGAQGAGFVLGPGIGFLLNF 208

Query: 685 CNFTIG 702
CNFTIG
Sbjct: 209 CNFTIG 214

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,197,912,071
Number of extensions: 23187553
Number of successful extensions: 75265
Number of sequences better than 10.0: 303
Number of HSP's gapped: 75059
Number of HSP's successfully gapped: 352
Length of query: 303
Length of database: 1,040,966,779
Length adjustment: 128
Effective length of query: 175
Effective length of database: 630,818,299
Effective search space: 110393202325
Effective search space used: 110393202325
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.56 gvh: 0.10 alm: 0.22 top: 0.53 tms: 0.13 mit: 0.37 mip: 0.00
nuc: 0.12 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

36.0 %: plasma membrane
20.0 %: mitochondrial
20.0 %: endoplasmic reticulum
12.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for Contig-U09379-1 is pla

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0