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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U09376-1
Contig ID Contig-U09376-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U09376-1 (Contig-U09376-1Q) /CSM_Contig/Contig-U09376-1Q.Seq.d
GGAAAAACAATTTTTAAAATAAAATTAAATGATTTTTAAATTAAAAAAAA
AAAAAAAAAAAAATTAATTTGGTTTTTAATTTTTTTTAATTTTTTTAATT
TTTAATTTTAATATTTAATGGTGCAATAAAACTCAAAATTAAAATAAAAA
AAAAGGGGTAAAAAAAAAAAACAATATTAATATACAAATATATTTGTTTT
AAATATTTTTCCTGTTTTTTCTTTCCAAAAAAAAAAAAAAGAAAAAAAAA
ATTATAGTAATAATACAATAATAATTAATAATTAATTAATAATAATAATA
ATAGTAATAAT----------CCATTATTTGGAATTTTAGAGGAAAATCA
TGTAATGGTAGGATCACATATTAGGGATGTACCTATAGTTGGTAAACTTT
ATGAAAGATTTAATACAATTTATGTAGACCAAAATAATAAAGCAAAAGCA
AGAATCGATGTGTTGGACAGTTTATCAAATACAGATTTCCCATTACTAAT
TTACCCAGAAGGTGGTTTAAATAATGGTAAAACCGGTTTAATGATGTTCA
ATAAATTCGTATTTGGATTGGGTCATTCAATTTGTCCAATTGCTATGAGA
CTTCACAATAATTGGCCTGTTGAAACTGATTATATAAATTCAAGTTGGTT
TAAAAACTTTTTTTGGTGGATTTTAATACCCTATCATCATTTCGAATTAA
CTTTTTTACCACATGAATCAATAAAACAAGATGAAACTGATTCTCAATTC
GCTACTCGTGTTCAAACTATAATTGCAAATAAACTTTCTTTAGAACCAAC
ACTTTATAATTATACTCAAAAAAGACAATATGCAAAACATTTATTATCTT
TAAAAAATTAATTAAAAAATTAATTAATTATAAACAATC
Gap gap included
Contig length 879
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 1434966
End point 1434086
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U09376
List of clone(s) 

est1=SSE663F,1,312
est2=SSE663Z,313,881
Translated Amino Acid sequence 
knnf*nkik*fln*kkkkkkinlvfnff*ff*flilifngaiklkikikkkg*kkktili
ykyicfkyfscfffpkkkkrkkkl***ynnn**LINNNNNSNN---

---PLFGILEENHVMVGSHIRDVPIVGKLYERFNTIYVDQNNKAKARIDVLDSLSNTDFP
LLIYPEGGLNNGKTGLMMFNKFVFGLGHSICPIAMRLHNNWPVETDYINSSWFKNFFWWI
LIPYHHFELTFLPHESIKQDETDSQFATRVQTIIANKLSLEPTLYNYTQKRQYAKHLLSL
KN*lkn*liinn
Translated Amino Acid sequence (All Frames) 
Frame A:
gktifkiklndf*ikkkkkkkliwfliffnffnf*f*ylmvq*nsklk*kkrgkkkkqy*
ytnifvlnifpvfsfqkkkkekknysnntiiinn*liiiiivi---

---PLFGILEENHVMVGSHIRDVPIVGKLYERFNTIYVDQNNKAKARIDVLDSLSNTDFP
LLIYPEGGLNNGKTGLMMFNKFVFGLGHSICPIAMRLHNNWPVETDYINSSWFKNFFWWI
LIPYHHFELTFLPHESIKQDETDSQFATRVQTIIANKLSLEPTLYNYTQKRQYAKHLLSL
KN*lkn*liinn

Frame B:
ekqflk*n*mifklkkkkkkn*fgf*ffliflifnfni*wcnktqn*nkkkgvkkknnin
iqiylf*ifflfflskkkkkkkkiiviiq**liin********---

---hylef*rkim*w*dhilgmyl*lvnfmkdliqfm*tkiikqkqesmcwtvyqiqish
y*ftqkvv*imvkpv**csinsyldwviqfvqll*dftiigllklii*iqvglktffggf
*ypiiisn*lfyhmnq*nkmklilnsllvfkl*lqinfl*nqhfiiilkkdnmqniyyl*
kin*kin*l*ti

Frame C:
knnf*nkik*fln*kkkkkkinlvfnff*ff*flilifngaiklkikikkkg*kkktili
ykyicfkyfscfffpkkkkrkkkl***ynnn**LINNNNNSNN---

---iiwnfrgkscngrity*gctysw*tl*ki*ynlcrpk**sksknrcvgqfikyrfpi
tnlprrwfk*w*nrfndvq*iriwigsfnlsncyetsq*lac*n*lykfklv*klflvdf
ntlssfrinfftt*inktr*n*fsiryscsnynck*tffrtntl*lyskkticktfiifk
klikklinykq
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U09376-1 (Contig-U09376-1Q)
/CSM_Contig/Contig-U09376-1Q.Seq.d
         (889 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09376-1 (Contig-U09376-1Q) /CSM_Contig/Conti...   971  0.0
Contig-U10133-1 (Contig-U10133-1Q) /CSM_Contig/Conti...    46  6e-05
Contig-U11018-1 (Contig-U11018-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U09552-1 (Contig-U09552-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U09457-1 (Contig-U09457-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U07854-1 (Contig-U07854-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U06228-1 (Contig-U06228-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U14167-1 (Contig-U14167-1Q) /CSM_Contig/Conti...    36  0.063
Contig-U13018-1 (Contig-U13018-1Q) /CSM_Contig/Conti...    36  0.063
Contig-U12134-1 (Contig-U12134-1Q) /CSM_Contig/Conti...    36  0.063

>Contig-U09376-1 (Contig-U09376-1Q) /CSM_Contig/Contig-U09376-1Q.Seq.d
          Length = 889

 Score =  971 bits (490), Expect = 0.0
 Identities = 504/511 (98%)
 Strand = Plus / Plus

                                                                       
Query: 322 ccattatttggaattttagaggaaaatcatgtaatggtaggatcacatattagggatgta 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ccattatttggaattttagaggaaaatcatgtaatggtaggatcacatattagggatgta 381

                                                                       
Query: 382 cctatagttggtaaactttatgaaagatttaatacaatttatgtagaccaaaataataaa 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cctatagttggtaaactttatgaaagatttaatacaatttatgtagaccaaaataataaa 441

                                                                       
Query: 442 gcaaaagcaagaatcgatgtgttggacagtttatcaaatacagatttcccattactaatt 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gcaaaagcaagaatcgatgtgttggacagtttatcaaatacagatttcccattactaatt 501

                                                                       
Query: 502 tacccagaaggtggtttaaataatggtaaaaccggtttaatgatgttcaataaattcgta 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tacccagaaggtggtttaaataatggtaaaaccggtttaatgatgttcaataaattcgta 561

                                                                       
Query: 562 tttggattgggtcattcaatttgtccaattgctatgagacttcacaataattggcctgtt 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tttggattgggtcattcaatttgtccaattgctatgagacttcacaataattggcctgtt 621

                                                                       
Query: 622 gaaactgattatataaattcaagttggtttaaaaacnnnnnnnggtggattttaataccc 681
           ||||||||||||||||||||||||||||||||||||       |||||||||||||||||
Sbjct: 622 gaaactgattatataaattcaagttggtttaaaaactttttttggtggattttaataccc 681

                                                                       
Query: 682 tatcatcatttcgaattaacttttttaccacatgaatcaataaaacaagatgaaactgat 741
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tatcatcatttcgaattaacttttttaccacatgaatcaataaaacaagatgaaactgat 741

                                                                       
Query: 742 tctcaattcgctactcgtgttcaaactataattgcaaataaactttctttagaaccaaca 801
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tctcaattcgctactcgtgttcaaactataattgcaaataaactttctttagaaccaaca 801

                                          
Query: 802 ctttataattatactcaaaaaagacaatatg 832
           |||||||||||||||||||||||||||||||
Sbjct: 802 ctttataattatactcaaaaaagacaatatg 832


 Score =  109 bits (55), Expect = 5e-24
 Identities = 55/55 (100%)
 Strand = Plus / Plus

                                                                  
Query: 172 caatattaatatacaaatatatttgttttaaatatttttcctgttttttctttcc 226
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 caatattaatatacaaatatatttgttttaaatatttttcctgttttttctttcc 226


 Score = 83.8 bits (42), Expect = 3e-16
 Identities = 42/42 (100%)
 Strand = Plus / Plus

                                                    
Query: 1  ggaaaaacaatttttaaaataaaattaaatgatttttaaatt 42
          ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggaaaaacaatttttaaaataaaattaaatgatttttaaatt 42


 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 110 aatatttaatggtgcaataaaactc 134
           |||||||||||||||||||||||||
Sbjct: 110 aatatttaatggtgcaataaaactc 134


>Contig-U10133-1 (Contig-U10133-1Q) /CSM_Contig/Contig-U10133-1Q.Seq.d
          Length = 1197

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 4  aaaacaatttttaaaataaaattaaat 30
          ||||||||| |||||||||||||||||
Sbjct: 46 aaaacaattattaaaataaaattaaat 72


>Contig-U11018-1 (Contig-U11018-1Q) /CSM_Contig/Contig-U11018-1Q.Seq.d
          Length = 1393

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 11 tttttaaaataaaattaaat 30
          ||||||||||||||||||||
Sbjct: 38 tttttaaaataaaattaaat 19


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,376
Number of Sequences: 6905
Number of extensions: 14376
Number of successful extensions: 1723
Number of sequences better than 10.0: 224
length of query: 889
length of database: 5,674,871
effective HSP length: 16
effective length of query: 873
effective length of database: 5,564,391
effective search space: 4857713343
effective search space used: 4857713343
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.15
Homology vs DNA 
Query= Contig-U09376-1 (Contig-U09376-1Q) /CSM_Contig/Contig-U09376-1Q.Seq.d
         (889 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C84705) Dictyostelium discoideum slug cDNA, clone SSE663.        666   0.0    2
(AU072481) Dictyostelium discoideum slug cDNA, clone SSE663.      109   2e-19  1
(CO930963) AGENCOURT_30430766 NIH_ZGC_14 Danio rerio cDNA cl...    50   0.14   1
(AC205087) Macaca mulatta  BAC CH250-451N3 () complete seque...    38   0.29   3
(EK422359) 1095515523424 Global-Ocean-Sampling_GS-31-01-01-1...    40   0.48   2
(AC005778) Homo sapiens chromosome 19, cosmid F22676, comple...    48   0.57   1
(AC160568) Pan troglodytes BAC clone CH251-293A11 from chrom...    42   1.1    2
(BS000082) Pan troglodytes chromosome 22 clone:RP43-097H18, ...    46   2.3    1
(AF480930) Anthopleura elegantissima ATP synthase subunit 6 ...    46   2.3    1
(AC073236) Homo sapiens BAC clone RP11-774B15 from 7, comple...    46   2.3    1
(AC154894) Bos taurus clone CH240-26P15, WORKING DRAFT SEQUE...    46   2.3    1
(AC016222) Homo sapiens clone RP11-26J6, WORKING DRAFT SEQUE...    46   2.3    1
(CT546091) A BAC library has been constructed from cultivar ...    46   2.3    1
(CT795058) Paramecium tetraurelia 5-PRIME EST from clone LK0...    46   2.3    1
(BG671564) DRNBUF05 Rat DRG Library Rattus norvegicus cDNA c...    46   2.3    1
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    46   2.3    1
(AC178346) Strongylocentrotus purpuratus clone R3-3105E21, W...    42   3.0    3
(AC169926) Macaca mulatta clone CH250-271B14, WORKING DRAFT ...    32   4.3    2
(AC181286) Strongylocentrotus purpuratus clone R3-4017A08, W...    32   4.3    2
(CE534337) tigr-gss-dog-17000365904165 Dog Library Canis lup...    34   4.4    2
(AM460687) Vitis vinifera contig VV78X013211.40, whole genom...    40   5.8    2
(DB830865) Nilaparvata lugens mRNA, EST clone:NLNB9059, 5' e...    32   5.8    2
(AZ676575) ENTKL12TR Entamoeba histolytica Sheared DNA Entam...    42   6.8    2
(CE608125) tigr-gss-dog-17000313525118 Dog Library Canis lup...    34   7.1    3
(AY196159) Solanum tuberosum nematode resistance-like protei...    38   8.0    3
(CR932398) Zebrafish DNA sequence from clone CH211-264C24 in...    44   8.9    1
(BX294128) Zebrafish DNA sequence from clone DKEYP-35F12 in ...    44   8.9    1
(BV441540) S237P6228RD7.T0 PortugueseWaterDog Canis familiar...    44   8.9    1
(BV422520) S229P65RD6.T0 GermanShepherd Canis familiaris STS...    44   8.9    1
(BV408089) S229P679RG9.T0 GermanShepherd Canis familiaris ST...    44   8.9    1
(CT010430) Mouse DNA sequence from clone RP23-335P18 on chro...    44   8.9    1
(AL928857) Mouse DNA sequence from clone RP24-499A8 on chrom...    44   8.9    1
(AC162803) Mus musculus BAC clone RP23-376G22 from chromosom...    44   8.9    1
(AC162616) Mus musculus chromosome 5, clone RP23-260P17, com...    44   8.9    1
(AC159461) Mus musculus BAC clone RP23-273I10 from chromosom...    44   8.9    1
(AC154539) Mus musculus BAC clone RP23-452F20 from chromosom...    44   8.9    1
(AC151288) Mus musculus BAC clone RP23-340K6 from chromosome...    44   8.9    1
(AC133651) Mus musculus BAC clone RP24-239C15 from 1, comple...    44   8.9    1
(AC129190) Mus musculus BAC clone RP24-79D2 from chromosome ...    44   8.9    1
(AC099589) Mus musculus chromosome 1, clone RP23-337A19, com...    44   8.9    1
(BS000124) Pan troglodytes chromosome 22 clone:PTB-069P04, m...    44   8.9    1
(AC199028) Pan troglodytes BAC clone CH251-492A10 from chrom...    44   8.9    1
(CR382134) Debaryomyces hansenii chromosome B of strain CBS7...    44   8.9    1
(CS604924) Sequence 3910 from Patent WO2007039234.                 44   8.9    1
(CS603276) Sequence 2262 from Patent WO2007039234.                 44   8.9    1
(AX346970) Sequence 2041 from Patent WO0200928.                    44   8.9    1
(AC147872) Monodelphis domestica clone VMRC6-555H19, complet...    44   8.9    1
(AP001729) Homo sapiens genomic DNA, chromosome 21q, section...    44   8.9    1
(AP001430) Homo sapiens genomic DNA, chromosome 21q22.2, clo...    44   8.9    1
(AP000156) Homo sapiens genomic DNA, chromosome 21q22.2, DSC...    44   8.9    1
(AP000014) Homo sapiens genomic DNA of 21q22.2 Down Syndrome...    44   8.9    1
(AL157762) Human DNA sequence from clone RP11-153I24 on chro...    44   8.9    1
(AL080243) Human DNA sequence from clone RP11-12M9 on chromo...    44   8.9    1
(AJ277662) Homo sapiens partial TUB gene for tubby (mouse) h...    44   8.9    1
(AC129895) Homo sapiens chromosome 11, clone CTD-2634E19, co...    44   8.9    1
(AC097513) Homo sapiens BAC clone RP11-419E3 from 4, complet...    44   8.9    1
(AC069026) Homo sapiens chromosome 10 clone RP11-561F6, comp...    44   8.9    1
(AC022541) Homo sapiens chromosome 10 clone RP11-4O7, comple...    44   8.9    1
(AC159754) Bos taurus clone CH240-81D5, WORKING DRAFT SEQUEN...    44   8.9    1
(AC153444) Bos taurus clone CH240-14J9, *** SEQUENCING IN PR...    44   8.9    1
(AC151262) Mus musculus chromosome 17 clone RP24-393C12, ***...    44   8.9    1
(AC141730) Apis mellifera clone CH224-58F21, WORKING DRAFT S...    44   8.9    1
(AC133838) Rattus norvegicus clone CH230-232A7, *** SEQUENCI...    44   8.9    1
(AC128511) Rattus norvegicus clone CH230-105B5, *** SEQUENCI...    44   8.9    1
(AC126150) Rattus norvegicus clone CH230-69L10, *** SEQUENCI...    44   8.9    1
(AC125661) Rattus norvegicus clone CH230-160L21, *** SEQUENC...    44   8.9    1
(AC124082) Mus musculus chromosome 17 clone RP24-393C12 map ...    44   8.9    1
(AC101858) Mus musculus clone RP23-307F22, WORKING DRAFT SEQ...    44   8.9    1
(AC101114) Mus musculus clone RP23-92E14, LOW-PASS SEQUENCE ...    44   8.9    1
(CU915602) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.9    1
(CU695229) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***...    44   8.9    1
(CU656022) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.9    1
(AC091294) Mus musculus strain C57BL6/J chromosome 5 clone R...    44   8.9    1
(AC091072) Mus musculus strain C57BL6/J chromosome 5 clone R...    44   8.9    1
(AC074005) Homo sapiens chromosome 11 clone RP11-297I1, WORK...    44   8.9    1
(AC061998) Homo sapiens chromosome 21 clone RP11-401I23 map ...    44   8.9    1
(CU468406) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.9    1
(CR388149) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   8.9    1
(AP000895) Homo sapiens genomic DNA, chromosome 18p11.3 clon...    44   8.9    1
(AL844509) Plasmodium falciparum chromosome 13.                    44   8.9    1
(AL353192) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   8.9    1
(AC225300) Monodelphis domestica clone VMRC18-953L14, WORKIN...    44   8.9    1
(AC221180) Bos taurus clone CH240-396F16, WORKING DRAFT SEQU...    44   8.9    1
(AC199459) Macaca mulatta clone CH250-133E1, WORKING DRAFT S...    44   8.9    1
(AC174892) Bos taurus clone CH240-279N6, WORKING DRAFT SEQUE...    44   8.9    1
(AC173620) Bos taurus clone CH240-81C18, WORKING DRAFT SEQUE...    44   8.9    1
(AC013708) Homo sapiens clone RP11-22L8, WORKING DRAFT SEQUE...    44   8.9    1
(AM670164) Entamoeba terrapinae GSS, clone terra158a08.q1k.        44   8.9    1
(EI206867) MUGQ_CH252P207J04T7_GL496_008 CHORI-252 Vervet Mo...    44   8.9    1
(EI088833) hhe0009ac01.g1 hhe Oryza ridleyi genomic clone hh...    44   8.9    1
(DU282857) 1098448256131 CHORI-243 Ovis aries genomic clone ...    44   8.9    1
(DH343630) Oryzias latipes Fosmid clone:GOLWFno714_p23, forw...    44   8.9    1
(CR836414) GR0AAA70CC06FM1 INRA BAC Bos taurus genomic clone...    44   8.9    1
(CR834743) GR0AAA69AG09RM1 INRA BAC Bos taurus genomic clone...    44   8.9    1
(AG624342) Macaca fuscata fuscata DNA, clone: MSB2-019J07_R,...    44   8.9    1
(AG529944) Mus musculus molossinus DNA, clone:MSMg01-439K05....    44   8.9    1
(DT345627) JGI_CAAX9469.rev CAAX Pimephales promelas testis ...    44   8.9    1
(DT315428) JGI_CAAX4904.fwd CAAX Pimephales promelas testis ...    44   8.9    1
(DT315427) JGI_CAAX4904.rev CAAX Pimephales promelas testis ...    44   8.9    1
(DT311768) JGI_CAAX2564.fwd CAAX Pimephales promelas testis ...    44   8.9    1

>(C84705) Dictyostelium discoideum slug cDNA, clone SSE663.
          Length = 569

 Score =  666 bits (336), Expect(2) = 0.0
 Identities = 336/336 (100%)
 Strand = Plus / Plus


Query: 322 ccattatttggaattttagaggaaaatcatgtaatggtaggatcacatattagggatgta 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ccattatttggaattttagaggaaaatcatgtaatggtaggatcacatattagggatgta 60


Query: 382 cctatagttggtaaactttatgaaagatttaatacaatttatgtagaccaaaataataaa 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cctatagttggtaaactttatgaaagatttaatacaatttatgtagaccaaaataataaa 120


Query: 442 gcaaaagcaagaatcgatgtgttggacagtttatcaaatacagatttcccattactaatt 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcaaaagcaagaatcgatgtgttggacagtttatcaaatacagatttcccattactaatt 180


Query: 502 tacccagaaggtggtttaaataatggtaaaaccggtttaatgatgttcaataaattcgta 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tacccagaaggtggtttaaataatggtaaaaccggtttaatgatgttcaataaattcgta 240


Query: 562 tttggattgggtcattcaatttgtccaattgctatgagacttcacaataattggcctgtt 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tttggattgggtcattcaatttgtccaattgctatgagacttcacaataattggcctgtt 300


Query: 622 gaaactgattatataaattcaagttggtttaaaaac 657
           ||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaaactgattatataaattcaagttggtttaaaaac 336

 Score =  276 bits (139), Expect(2) = 0.0
 Identities = 139/139 (100%)
 Strand = Plus / Plus


Query: 665 ggtggattttaataccctatcatcatttcgaattaacttttttaccacatgaatcaataa 724
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ggtggattttaataccctatcatcatttcgaattaacttttttaccacatgaatcaataa 403


Query: 725 aacaagatgaaactgattctcaattcgctactcgtgttcaaactataattgcaaataaac 784
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aacaagatgaaactgattctcaattcgctactcgtgttcaaactataattgcaaataaac 463


Query: 785 tttctttagaaccaacact 803
           |||||||||||||||||||
Sbjct: 464 tttctttagaaccaacact 482

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 707,900,448
Number of extensions: 44515565
Number of successful extensions: 3781315
Number of sequences better than 10.0: 114
Length of query: 889
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 865
Effective length of database: 97,308,875,965
Effective search space: 84172177709725
Effective search space used: 84172177709725
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.25
Homology vs Protein 
Query= Contig-U09376-1 (Contig-U09376-1Q) /CSM_Contig/Contig-U09376-1Q.Seq.d
         (889 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q6PBN5) RecName: Full=Ancient ubiquitous protein 1;  &BC065447_...    71   6e-11
(B1H1N7) RecName: Full=Ancient ubiquitous protein 1;  &BC160678_...    70   7e-11
(A9ULG4) RecName: Full=Ancient ubiquitous protein 1;  &BC157245_...    69   2e-10
BC102888_1(BC102888|pid:none) Bos taurus ancient ubiquitous prot...    59   3e-07
AL590449_30(AL590449|pid:none) chromosome X of strain GB-M1 of E...    59   3e-07
(Q9Y679) RecName: Full=Ancient ubiquitous protein 1;  &AF100754_...    58   4e-07
AF100753_1(AF100753|pid:none) Homo sapiens ancient ubiquitous 46...    58   4e-07
AK293121_1(AK293121|pid:none) Homo sapiens cDNA FLJ76490 complet...    58   4e-07
AK023983_1(AK023983|pid:none) Homo sapiens cDNA FLJ13921 fis, cl...    58   4e-07
EU131668_1(EU131668|pid:none) Giardia intestinalis 1-acyl-sn-gyl...    57   8e-07
(A1L134) RecName: Full=Ancient ubiquitous protein 1;  &BC127544_...    57   1e-06
AK154707_1(AK154707|pid:none) Mus musculus NOD-derived CD11c +ve...    56   1e-06
BC012699_1(BC012699|pid:none) Mus musculus ancient ubiquitous pr...    56   1e-06
AK171541_1(AK171541|pid:none) Mus musculus B6-derived CD11 +ve d...    56   1e-06
(P70295) RecName: Full=Ancient ubiquitous protein 1;  &AK158035_...    56   1e-06
(Q0KHU5) RecName: Full=1-acylglycerophosphocholine O-acyltransfe...    49   3e-04
AE014298_1395(AE014298|pid:none) Drosophila melanogaster chromos...    49   3e-04
AY060832_1(AY060832|pid:none) Drosophila melanogaster GM01605 fu...    49   3e-04
AC003680_20(AC003680|pid:none) Arabidopsis thaliana chromosome 2...    49   3e-04
AC159873_1(AC159873|pid:none) Medicago truncatula clone mth2-46p...    48   5e-04
Z50806_5(Z50806|pid:none) Caenorhabditis elegans Cosmid M79, com...    48   5e-04
T23830(T23830)hypothetical protein M79.3 - Caenorhabditis elegans      47   7e-04
BC094146_1(BC094146|pid:none) Xenopus laevis hypothetical protei...    47   9e-04
CP001326_527(CP001326|pid:none) Micromonas sp. RCC299 chromosome...    47   9e-04
BC072734_1(BC072734|pid:none) Xenopus laevis hypothetical protei...    47   9e-04
BC167630_1(BC167630|pid:none) Xenopus tropicalis hypothetical pr...    46   0.001
BC123183_1(BC123183|pid:none) Xenopus laevis lysophosphatidic ac...    46   0.002
AC006642_3(AC006642|pid:none) Caenorhabditis elegans cosmid F49H...    46   0.002
AM486287_2(AM486287|pid:none) Vitis vinifera contig VV78X149941....    46   0.002
AC006642_2(AC006642|pid:none) Caenorhabditis elegans cosmid F49H...    46   0.002
EU391594_1(EU391594|pid:none) Ricinus communis putative lysophos...    45   0.002
(A3KGT9) RecName: Full=Glycerol-3-phosphate acyltransferase 3-li...    45   0.003
AK162033_1(AK162033|pid:none) Mus musculus 12 days embryo female...    45   0.003
BC057860_1(BC057860|pid:none) Mus musculus 1-acylglycerol-3-phos...    45   0.003
CR954217_125(CR954217|pid:none) Ostreococcus tauri strain OTTH05...    45   0.003
(Q5R6J7) RecName: Full=Glycerol-3-phosphate acyltransferase 4;  ...    44   0.006
CR860492_1(CR860492|pid:none) Pongo abelii mRNA; cDNA DKFZp469O1...    44   0.006
AP004674_26(AP004674|pid:none) Oryza sativa Japonica Group genom...    44   0.007
AE003852_2477(AE003852|pid:none) Vibrio cholerae O1 biovar eltor...    44   0.007
Z49207_4(Z49207|pid:none) Caenorhabditis elegans Cosmid R07E3, c...    44   0.007
CP001485_814(CP001485|pid:none) Vibrio cholerae MJ-1236 chromoso...    44   0.007
EF084942_1(EF084942|pid:none) Picea sitchensis clone WS0284_M01 ...    44   0.009
AK118869_1(AK118869|pid:none) Arabidopsis thaliana At5g60620 mRN...    43   0.012
AB005246_4(AB005246|pid:none) Arabidopsis thaliana genomic DNA, ...    43   0.012
BC146204_1(BC146204|pid:none) Bos taurus 1-acylglycerol-3-phosph...    43   0.016
CP000789_3504(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch...    43   0.016
FJ588001_1(FJ588001|pid:none) Sus scrofa testis spermatogenesis ...    43   0.016
BC115303_1(BC115303|pid:none) Danio rerio zgc:136875, mRNA (cDNA...    43   0.016
(A3FPG8) RecName: Full=Glycerol-3-phosphate acyltransferase 4;  ...    43   0.016
FJ439669_1(FJ439669|pid:none) Sus scrofa 1-acylglycerol-3-phosph...    43   0.016
BA000037_1561(BA000037|pid:none) Vibrio vulnificus YJ016 DNA, ch...    42   0.021
AK167876_1(AK167876|pid:none) Mus musculus cDNA, RIKEN full-leng...    42   0.028
AM181176_833(AM181176|pid:none) Pseudomonas fluorescens SBW25 co...    42   0.036
CP000596_128(CP000596|pid:none) Ostreococcus lucimarinus CCE9901...    42   0.036
FN319886_1(FN319886|pid:none) Schistosoma japonicum isolate Anhu...    42   0.036
FN319889_1(FN319889|pid:none) Schistosoma japonicum isolate Anhu...    42   0.036
CP001080_1101(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP...    41   0.061
(Q4V8J4) RecName: Full=Glycerol-3-phosphate acyltransferase 3;  ...    41   0.061
AB075872_1(AB075872|pid:none) Homo sapiens mRNA for putative pro...    40   0.080
AX268073_1(AX268073|pid:none) Sequence 1 from Patent WO0173051.        40   0.080
BC073136_1(BC073136|pid:none) Homo sapiens 1-acylglycerol-3-phos...    40   0.080
BX842646_318(BX842646|pid:none) Bdellovibrio bacteriovorus compl...    40   0.080
BX649525_6(BX649525|pid:none) Zebrafish DNA sequence from clone ...    40   0.14
CP000926_4437(CP000926|pid:none) Pseudomonas putida GB-1, comple...    39   0.23
CP000094_1742(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ...    38   0.40
AM181176_4554(AM181176|pid:none) Pseudomonas fluorescens SBW25 c...    38   0.40
CP000449_1251(CP000449|pid:none) Maricaulis maris MCS10, complet...    38   0.40
CP000783_372(CP000783|pid:none) Enterobacter sakazakii ATCC BAA-...    38   0.40
FN319890_1(FN319890|pid:none) Schistosoma japonicum isolate Anhu...    37   0.68
AM286415_3502(AM286415|pid:none) Yersinia enterocolitica subsp. ...    37   0.68
FB830915_1(FB830915|pid:none) Sequence 50188 from Patent WO20080...    37   0.89
FB830921_1(FB830921|pid:none) Sequence 50194 from Patent WO20080...    37   0.89
FM178379_512(FM178379|pid:none) Aliivibrio salmonicida LFI1238 c...    37   0.89
BX571872_104(BX571872|pid:none) Photorhabdus luminescens subsp. ...    37   1.2
AE005673_1843(AE005673|pid:none) Caulobacter crescentus CB15, co...    37   1.2
CP000140_3387(CP000140|pid:none) Parabacteroides distasonis ATCC...    36   1.5
BT011163_1(BT011163|pid:none) Drosophila melanogaster AT16061 fu...    36   1.5
AY876049_1(AY876049|pid:none) Pseudomonas fluorescens strain F11...    36   1.5
AC0083(AC0083) 1-acylglycerol-3-phosphate O-acyltransferase (EC ...    36   2.0
AE009952_3458(AE009952|pid:none) Yersinia pestis KIM, complete g...    36   2.0
CP000356_191(CP000356|pid:none) Sphingopyxis alaskensis RB2256, ...    36   2.0
CP000053_1111(CP000053|pid:none) Rickettsia felis URRWXCal2, com...    36   2.0
CP001277_748(CP001277|pid:none) Candidatus Hamiltonella defensa ...    36   2.0
CT573326_1037(CT573326|pid:none) Pseudomonas entomophila str. L4...    35   2.6
CP000020_394(CP000020|pid:none) Vibrio fischeri ES114 chromosome...    35   3.4
CP000034_2992(CP000034|pid:none) Shigella dysenteriae Sd197, com...    35   3.4
CP001139_386(CP001139|pid:none) Vibrio fischeri MJ11 chromosome ...    35   3.4
AE005174_3920(AE005174|pid:none) Escherichia coli O157:H7 EDL933...    35   4.4
CP000964_675(CP000964|pid:none) Klebsiella pneumoniae 342, compl...    34   5.8
CP000529_3313(CP000529|pid:none) Polaromonas naphthalenivorans C...    34   5.8
CP000230_3758(CP000230|pid:none) Rhodospirillum rubrum ATCC 1117...    34   5.8
CP001281_3280(CP001281|pid:none) Thauera sp. MZ1T, complete geno...    34   5.8
AP009153_3772(AP009153|pid:none) Gemmatimonas aurantiaca T-27 DN...    34   5.8
CP000647_3371(CP000647|pid:none) Klebsiella pneumoniae subsp. pn...    34   5.8
CP001127_3119(CP001127|pid:none) Salmonella enterica subsp. ente...    34   7.5
(P0A257) RecName: Full=1-acyl-sn-glycerol-3-phosphate acyltransf...    34   7.5
CP001120_3200(CP001120|pid:none) Salmonella enterica subsp. ente...    34   7.5
DQ205522_1(DQ205522|pid:none) Vigna unguiculata sulfoquinovosyld...    34   7.5
B45582(B45582)probable 1-acylglycerol-3-phosphate O-acyltransfer...    34   7.5
CP000880_4276(CP000880|pid:none) Salmonella enterica subsp. ariz...    34   7.5

>(Q6PBN5) RecName: Full=Ancient ubiquitous protein 1;
           &BC065447_1(BC065447|pid:none)
          Length = 423

 Score = 70.9 bits (172), Expect = 6e-11
 Identities = 35/116 (30%), Positives = 62/116 (53%)
 Frame = +1

Query: 490 PLLIYPEGGLNNGKTGLMMFNKFVFGLGHSICPIAMRLHNNWPVETDYINSSWFKNFFWW 669
           PLL++PE    NG+TGL+ F+ + F +  SI P+A+ +   + +      SSW     W
Sbjct: 154 PLLLFPEEDTTNGRTGLLKFSSWPFSVSDSIQPVALLVKRPF-IAVSTPESSWLTELLWT 212

Query: 670 ILIPYHHFELTFLPHESIKQDETDSQFATRVQTIIANKLSLEPTLYNYTQKRQYAK 837
             +P+  + + +LP  S +  ET  +FA++VQ ++A +L +  T      K ++ K
Sbjct: 213 FFVPFTVYHVRWLPPLSKEDGETHQEFASKVQGLLATELGVISTQITKADKAEHIK 268

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 912,646,610
Number of extensions: 16241659
Number of successful extensions: 41218
Number of sequences better than 10.0: 100
Number of HSP's gapped: 41136
Number of HSP's successfully gapped: 100
Length of query: 296
Length of database: 1,040,966,779
Length adjustment: 127
Effective length of query: 169
Effective length of database: 634,022,584
Effective search space: 107149816696
Effective search space used: 107149816696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.79  gvh: 0.15  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for Contig-U09376-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0