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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U09345-1
Contig ID Contig-U09345-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U09345-1 (Contig-U09345-1Q) /CSM_Contig/Contig-U09345-1Q.Seq.d
TAATAGTAATAAAAAACAAAATGATGAAATCATCAAAAGTTTCAACAATA
TTACTTTTATTATTTGTTGTTATAATTGGTAGTTTTTGTTTAACATATGG
TGCACCATCAACAACCAACCAAAAACCATTAACATCAAGCGAAAAGAAAC
TATTGAATGATTTATACGATAGAGCAAAGAAAGCAGGTGGTGTAGTTGAA
TTCAAATCAAATTTAGATTCAAAGAAATTCGTTACCGCTCAAAATAGACC
ATATGATTTATTAGCTCTTTTCACATCTTCTAATCCAAAATATGGTTGTA
GTGGTTGTGTTCAATTAAAGAATCAAATTGAATCATTCTCACTTTCATAT
GAACCATATTTAAATTCAGCAGGATTTTTGGAGAAACCAATTTTTATCGT
TATTTTGGAAGTCGATTATAATATGGAAGTATTCCAAACAATTGGTTTAA
ATACAATTCCACATTTATTATTCATACCAAGTGGATCAAAACCAATCACT
CAAAAAGGTTATGCCTACACAGGTTTCGAACAAACCTCTTCTCAATCAAT
CTCTGATTTCATTTATAGTCATTCAAAGATTAGAATTGAACCA-------
---TTTATAGTCATTCAAAGATTAGAATTGAACCAGTTAAAACATTTTAT
GAAAAATATTCAGTTCAAATTTTAAGCTTTGTTGTATTTTTAGCATCAGT
TAGATTCCTTATTACTGCCTATAGAAAAAGAAAAAGTCCCAATGTTTTGG
TATTTCTTAACAATTTTATTATTCGCATGCGTTATTATGGGTATTTTCTA
TGACTTTATTCATAAACCAAACTTTTATGAGTTTGATCATCGTCAACAAA
CTTATAACTACTTCTCAAGAGGTTCAAGAAGTCAAACTGTTTCAGAGGGT
ATGATCATGGGTGTTTCAACTATGGCAATAACTCTTATTTTGGTATTCCT
TTCAGATATTTTACCAAATTATACAAATTTTTCATCAAAAAGTAAGGGTT
TATTATTCTTTATGGGTATGTCATCAATTATAGTCTTACTCTTCTTCCAA
TCCCTCGCTTTCCAAATTAAATATTACCGTCCATTATTTTTCATTCCATC
TGTCACTTATCATTATTAAATTTTTTTTTTTTTGATTGGAAAAAATAAAA
TAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATATAATAAAA
TATAATAAATGGTATTTTAAAAATAA
Gap gap included
Contig length 1216
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 3361857
End point 3360637
Strand (PLUS/MINUS) MINUS
Number of clones 4
Number of EST 5
Link to clone list U09345
List of clone(s) 

est1=VFN572F,1,593
est2=SSD593F,25,578
est3=VSJ894F,32,524
est4=SSM268Z,594,1217
est5=SSD593Z,705,1211
Translated Amino Acid sequence 
IVIKNKMMKSSKVSTILLLLFVVIIGSFCLTYGAPSTTNQKPLTSSEKKLLNDLYDRAKK
AGGVVEFKSNLDSKKFVTAQNRPYDLLALFTSSNPKYGCSGCVQLKNQIESFSLSYEPYL
NSAGFLEKPIFIVILEVDYNMEVFQTIGLNTIPHLLFIPSGSKPITQKGYAYTGFEQTSS
QSISDFIYSHSKIRIEP---

---YSHSKIRIEPVKTFYEKYSVQILSFVVFLASVRFLITAYRKRKSPNVLVFLNNFIIR
MRYYGYFL*lys*tkll*v*ssstnl*lllkrfkksncfrgydhgcfnygnnsyfgipfr
yftklykffikk*gfiilygyvinysltllpiprfpn*ilpsiifhsichlsllnffffd
wkk*nkik*nkik*nkikynki**mvf*k*
Translated Amino Acid sequence (All Frames) 
Frame A:
****ktk**nhqkfqqyyfyylll*lvvfv*hmvhhqqptknh*hqakrny*miytieqr
kqvv*lnsnqi*iqrnslplkidhmiy*lfshlliqnmvvvvvfn*riklnhshfhmnhi
*iqqdfwrnqflslfwksiiiwkyskqlv*iqfhiyysyqvdqnqslkkvmptqvsnkpl
lnqslisfiviqrleln---

---fiviqrlelnqlkhfmkniqfkf*allyf*hqldslllpiekekvpmfwyfltillf
acvimgifydfihkpnfyefdhrqqtynyfsrgsrsqtvsegmimgvstmaitlilvfls
dilpnytnfsskskgllffmgmssiivllffqslafqikyyrplffipsvtyhy*ifffl
igknkik*nkik*nkik*niikynkwyfkn

Frame B:
nsnkkqndeiiksfnnitfiiccynw*flfniwctinnqpktinikrketie*fir*ske
srwcs*iqikfrfkeiryrsk*ti*fissfhif*skiwl*wlcsikesn*iiltfi*tif
kfsrifgetnfyryfgsrl*ygsipnnwfkynstfiihtkwiktnhskrlclhrfrtnlf
sinl*fhl*sfkd*n*t---

---l*sfkd*n*ts*nil*kifssnfklccifsis*ipyycl*kkkksqcfgis*qfyys
hallwvfsmtlfinqtfmsliivnklittsqevqevklfqrv*swvfqlwq*llfwysfq
ifyqiiqifhqkvrvyyslwvchql*sysssnpslsklnitvhyfsfhlsliiikffff*
lekik*nkik*nkik*nki**niingilki

Frame C:
IVIKNKMMKSSKVSTILLLLFVVIIGSFCLTYGAPSTTNQKPLTSSEKKLLNDLYDRAKK
AGGVVEFKSNLDSKKFVTAQNRPYDLLALFTSSNPKYGCSGCVQLKNQIESFSLSYEPYL
NSAGFLEKPIFIVILEVDYNMEVFQTIGLNTIPHLLFIPSGSKPITQKGYAYTGFEQTSS
QSISDFIYSHSKIRIEP---

---YSHSKIRIEPVKTFYEKYSVQILSFVVFLASVRFLITAYRKRKSPNVLVFLNNFIIR
MRYYGYFL*lys*tkll*v*ssstnl*lllkrfkksncfrgydhgcfnygnnsyfgipfr
yftklykffikk*gfiilygyvinysltllpiprfpn*ilpsiifhsichlsllnffffd
wkk*nkik*nkik*nkikynki**mvf*k*
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U09345-1 (Contig-U09345-1Q)
/CSM_Contig/Contig-U09345-1Q.Seq.d
         (1226 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09345-1 (Contig-U09345-1Q) /CSM_Contig/Conti...  2161  0.0
Contig-U11682-1 (Contig-U11682-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U12261-1 (Contig-U12261-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12096-1 (Contig-U12096-1Q) /CSM_Contig/Conti...    36  0.087
Contig-U11752-1 (Contig-U11752-1Q) /CSM_Contig/Conti...    36  0.087
Contig-U10911-1 (Contig-U10911-1Q) /CSM_Contig/Conti...    36  0.087
Contig-U09610-1 (Contig-U09610-1Q) /CSM_Contig/Conti...    36  0.087
Contig-U09528-1 (Contig-U09528-1Q) /CSM_Contig/Conti...    36  0.087
Contig-U08277-1 (Contig-U08277-1Q) /CSM_Contig/Conti...    36  0.087
Contig-U02182-1 (Contig-U02182-1Q) /CSM_Contig/Conti...    36  0.087

>Contig-U09345-1 (Contig-U09345-1Q) /CSM_Contig/Contig-U09345-1Q.Seq.d
          Length = 1226

 Score = 2161 bits (1090), Expect = 0.0
 Identities = 1120/1120 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    taatagtaataaaaaacaaaatgatgaaatcatcaaaagtttcaacaatattacttttat 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    taatagtaataaaaaacaaaatgatgaaatcatcaaaagtttcaacaatattacttttat 60

                                                                        
Query: 61   tatttgttgttataattggtagtttttgtttaacatatggtgcaccatcaacaaccaacc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   tatttgttgttataattggtagtttttgtttaacatatggtgcaccatcaacaaccaacc 120

                                                                        
Query: 121  aaaaaccattaacatcaagcgaaaagaaactattgaatgatttatacgatagagcaaaga 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  aaaaaccattaacatcaagcgaaaagaaactattgaatgatttatacgatagagcaaaga 180

                                                                        
Query: 181  aagcaggtggtgtagttgaattcaaatcaaatttagattcaaagaaattcgttaccgctc 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  aagcaggtggtgtagttgaattcaaatcaaatttagattcaaagaaattcgttaccgctc 240

                                                                        
Query: 241  aaaatagaccatatgatttattagctcttttcacatcttctaatccaaaatatggttgta 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  aaaatagaccatatgatttattagctcttttcacatcttctaatccaaaatatggttgta 300

                                                                        
Query: 301  gtggttgtgttcaattaaagaatcaaattgaatcattctcactttcatatgaaccatatt 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  gtggttgtgttcaattaaagaatcaaattgaatcattctcactttcatatgaaccatatt 360

                                                                        
Query: 361  taaattcagcaggatttttggagaaaccaatttttatcgttattttggaagtcgattata 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  taaattcagcaggatttttggagaaaccaatttttatcgttattttggaagtcgattata 420

                                                                        
Query: 421  atatggaagtattccaaacaattggtttaaatacaattccacatttattattcataccaa 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  atatggaagtattccaaacaattggtttaaatacaattccacatttattattcataccaa 480

                                                                        
Query: 481  gtggatcaaaaccaatcactcaaaaaggttatgcctacacaggtttcgaacaaacctctt 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  gtggatcaaaaccaatcactcaaaaaggttatgcctacacaggtttcgaacaaacctctt 540

                                                                        
Query: 541  ctcaatcaatctctgatttcatttatagtcattcaaagattagaattgaaccannnnnnn 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  ctcaatcaatctctgatttcatttatagtcattcaaagattagaattgaaccannnnnnn 600

                                                                        
Query: 601  nnntttatagtcattcaaagattagaattgaaccagttaaaacattttatgaaaaatatt 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  nnntttatagtcattcaaagattagaattgaaccagttaaaacattttatgaaaaatatt 660

                                                                        
Query: 661  cagttcaaattttaagctttgttgtatttttagcatcagttagattccttattactgcct 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  cagttcaaattttaagctttgttgtatttttagcatcagttagattccttattactgcct 720

                                                                        
Query: 721  atagaaaaagaaaaagtcccaatgttttggtatttcttaacaattttattattcgcatgc 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  atagaaaaagaaaaagtcccaatgttttggtatttcttaacaattttattattcgcatgc 780

                                                                        
Query: 781  gttattatgggtattttctatgactttattcataaaccaaacttttatgagtttgatcat 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  gttattatgggtattttctatgactttattcataaaccaaacttttatgagtttgatcat 840

                                                                        
Query: 841  cgtcaacaaacttataactacttctcaagaggttcaagaagtcaaactgtttcagagggt 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  cgtcaacaaacttataactacttctcaagaggttcaagaagtcaaactgtttcagagggt 900

                                                                        
Query: 901  atgatcatgggtgtttcaactatggcaataactcttattttggtattcctttcagatatt 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  atgatcatgggtgtttcaactatggcaataactcttattttggtattcctttcagatatt 960

                                                                        
Query: 961  ttaccaaattatacaaatttttcatcaaaaagtaagggtttattattctttatgggtatg 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  ttaccaaattatacaaatttttcatcaaaaagtaagggtttattattctttatgggtatg 1020

                                                                        
Query: 1021 tcatcaattatagtcttactcttcttccaatccctcgctttccaaattaaatattaccgt 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 tcatcaattatagtcttactcttcttccaatccctcgctttccaaattaaatattaccgt 1080

                                                    
Query: 1081 ccattatttttcattccatctgtcacttatcattattaaa 1120
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 ccattatttttcattccatctgtcacttatcattattaaa 1120


>Contig-U11682-1 (Contig-U11682-1Q) /CSM_Contig/Contig-U11682-1Q.Seq.d
          Length = 1535

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 1   taatagtaataaaaaacaaaatgatgaaa 29
           |||||||||||||| | ||||||||||||
Sbjct: 126 taatagtaataaaataaaaaatgatgaaa 154


>Contig-U12261-1 (Contig-U12261-1Q) /CSM_Contig/Contig-U12261-1Q.Seq.d
          Length = 1193

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 146 gaaactattgaatgatttat 165
           ||||||||||||||||||||
Sbjct: 574 gaaactattgaatgatttat 593


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,401
Number of Sequences: 6905
Number of extensions: 21401
Number of successful extensions: 2425
Number of sequences better than 10.0: 247
length of query: 1226
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1210
effective length of database: 5,564,391
effective search space: 6732913110
effective search space used: 6732913110
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.15
Homology vs DNA 
Query= Contig-U09345-1 (Contig-U09345-1Q) /CSM_Contig/Contig-U09345-1Q.Seq.d
         (1226 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ417764) Dictyostelium discoideum cDNA clone:ddv28o17, 5' ...  1164   0.0    1
(AU039009) Dictyostelium discoideum slug cDNA, clone SSM268.      733   0.0    2
(AU270647) Dictyostelium discoideum vegetative cDNA clone:VS...   977   0.0    1
(AU037404) Dictyostelium discoideum slug cDNA, clone SSD593.      805   0.0    1
(AU072175) Dictyostelium discoideum slug cDNA, clone SSD593.      474   e-129  1
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5...    40   0.21   11
(AC115682) Dictyostelium discoideum chromosome 2 map 4101105...    38   0.26   7
(AE017308) Mycoplasma mobile 163K complete genome.                 34   0.40   2
(AC219862) Bos taurus clone CH240-320E18, WORKING DRAFT SEQU...    34   0.44   2
(DU201051) 1098553690656 CHORI-243 Ovis aries genomic clone ...    34   0.57   2
(CT956043) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   0.65   6
(AC068561) Mus musculus strain C57BL6/J chromosome 6 clone R...    40   0.77   6
(AF010551) Plasmodium falciparum microsatellite TA51 sequence.     34   0.78   3
(DQ343611) Perna perna isolate Ven34 NADH dehydrogenase subu...    48   0.79   1
(DQ343610) Perna perna isolate Ven28 NADH dehydrogenase subu...    48   0.79   1
(DQ343609) Perna perna isolate SA4 NADH dehydrogenase subuni...    48   0.79   1
(DQ343607) Perna perna isolate SA2 NADH dehydrogenase subuni...    48   0.79   1
(AL161788) Human DNA sequence from clone RP11-421B23 on chro...    48   0.79   1
(AC213954) Pteropus vampyrus clone CH279-190N14, WORKING DRA...    48   0.79   1
(BX572101) Prochlorococcus marinus MIT9313 complete genome; ...    48   0.79   1
(BQ633306) PfESToab40c11.y1 Plasmodium falciparum 3D7 asexua...    34   1.1    3
(BJ433805) Dictyostelium discoideum cDNA clone:ddv23a06, 3' ...    34   1.4    3
(BJ430741) Dictyostelium discoideum cDNA clone:ddv8e15, 3' e...    34   1.6    3
(AC161395) Bos taurus clone CH240-93L18, WORKING DRAFT SEQUE...    36   1.6    2
(AC157504) Medicago truncatula chromosome 2 clone mte1-65n19...    36   1.8    5
(DW937717) MSAM206856_2243_3586 LCM-dissected maize shoot ap...    42   1.9    2
(EV830824) TT1DH37TH Tetrahymena thermophila SB210 cDNA libr...    36   2.1    2
(CZ001411) OA_BBa0075P07.r OA_BBa Oryza alta genomic clone O...    32   2.1    2
(BV388472) S244P619RA2.T0 AlaskaGrayWolf Canis lupus STS gen...    34   2.1    2
(DX307252) OR_ABa0218O11.r OR_ABa Oryza ridleyi genomic clon...    34   2.2    2
(AZ170110) SP_0115_A2_F05_T7A Strongylocentrotus purpuratus,...    36   2.2    2
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    34   2.3    12
(ER633109) 1093018526375 Global-Ocean-Sampling_GS-36-01-01-2...    40   2.7    2
(CR627494) Zebrafish DNA sequence from clone CH211-48C9 in l...    46   2.7    5
(AC175088) Glycine tomentella clone gtt1-30c23, WORKING DRAF...    36   2.8    8
(CT955962) Zebrafish DNA sequence from clone CH211-209L5 in ...    46   3.1    1
(CR927050) Zebrafish DNA sequence from clone DKEY-217G21.          46   3.1    1
(CR450808) Zebrafish DNA sequence from clone DKEYP-55H4 in l...    46   3.1    1
(CR450764) Zebrafish DNA sequence from clone CH211-209F22 in...    46   3.1    1
(CR352258) Zebrafish DNA sequence from clone CH211-120G10 in...    46   3.1    1
(CR318646) Zebrafish DNA sequence from clone DKEY-83F18 in l...    46   3.1    1
(BX649628) Zebrafish DNA sequence from clone CH211-231M1 in ...    46   3.1    1
(BX255914) Zebrafish DNA sequence from clone CH211-212G7 in ...    46   3.1    1
(AL935334) Zebrafish DNA sequence from clone CH211-199B20 in...    46   3.1    1
(AC092648) Homo sapiens BAC clone RP11-421N10 from 7, comple...    46   3.1    1
(CU013526) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   3.1    1
(CR925712) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   3.1    1
(AC223033) Bos taurus clone CH240-431J4, WORKING DRAFT SEQUE...    46   3.1    1
(AC166408) Bos taurus clone CH240-185M2, WORKING DRAFT SEQUE...    46   3.1    1
(AC165557) Bos taurus clone CH240-172N19, WORKING DRAFT SEQU...    46   3.1    1
(ER961590) CH260-113G12_SP6 CHORI-260 Meleagris gallopavo ge...    46   3.1    1
(EJ037115) 1095454076464 Global-Ocean-Sampling_GS-26-01-01-1...    46   3.1    1
(AL406275) T7 end of clone AU0AA009C01 of library AU0AA from...    46   3.1    1
(EG112426) MSAM154754_0957_3023 LCM-dissected maize inbred l...    46   3.1    1
(DC233693) Plasmodium berghei strain ANKA cDNA clone:SG02841...    46   3.1    1
(AC069588) Homo sapiens chromosome 14 clone RP11-340E1 map 1...    40   3.2    7
(AM359926) Oryzias latipes EST, clone FOE002-P00044-DPE-R_A04.     40   3.3    2
(AC154555) Mus musculus BAC clone RP23-418L12 from chromosom...    34   4.0    8
(AL929287) Zebrafish DNA sequence from clone CH211-67L8.           36   4.0    8
(AC107952) Homo sapiens chromosome 8, clone RP11-140I16, com...    42   4.1    4
(AB240152) Watasenia scintillans mitochondrial DNA, complete...    44   4.3    2
(AC117080) Dictyostelium discoideum chromosome 2 map complem...    42   4.4    6
(AP000073) Homo sapiens genomic DNA, chromosome 8p11.2, sene...    42   4.7    5
(AC016459) Homo sapiens clone RP11-6L2, WORKING DRAFT SEQUEN...    34   4.7    6
(AC214826) Pan troglodytes chromosome 7 clone CH251-587P14, ...    40   5.0    6
(CV743220) SJAL_044_64.T7 SJL Schistosoma japonicum cDNA, mR...    38   5.1    3
(AC149380) Phakopsora pachyrhizi clone JGIAFNA-5A6, complete...    32   5.4    5
(AC023579) Homo sapiens clone RP11-33A9, WORKING DRAFT SEQUE...    34   5.5    8
(CU694465) RP43-14C20, complete sequence.                          32   5.8    2
(AC135850) Pan troglodytes clone rp43-2h12, WORKING DRAFT SE...    34   5.8    2
(AC177921) Zea mays chromosome 2 clone CH201-134C11; ZMMBBc0...    32   5.8    2
(AC008118) Homo sapiens 12 BAC RP11-515D8 (Roswell Park Canc...    34   5.9    2
(AC200475) Zea mays chromosome UNKNOWN clone ZMMBBb-469K9; Z...    32   6.0    2
(AC219083) Zea mays chromosome UNKNOWN clone ZMMBBb-129C12; ...    32   6.0    2
(AR553270) Sequence 8401 from patent US 6747137.                   38   6.1    2
(AC036170) Homo sapiens chromosome 18 clone RP11-584G20 map ...    38   6.3    5
(AM423338) Vitis vinifera contig VV78X164773.3, whole genome...    34   7.1    2
(EF067920) Phaeodactylum tricornutum chloroplast, complete g...    32   7.4    8
(AL590037) Human DNA sequence from clone RP11-129K24 on chro...    32   7.4    7
(BX855587) Zebrafish DNA sequence from clone DKEY-103L5 in l...    34   7.6    6
(AC110101) Rattus norvegicus clone CH230-211K5, *** SEQUENCI...    38   7.6    6
(CC607270) OGUGG55TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    32   7.8    2
(DV344623) NABWW62TF Aedes aegypti infected with Brugia Mala...    32   7.8    2
(CU468893) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   7.8    5
(AM432613) Vitis vinifera contig VV78X074996.15, whole genom...    34   7.9    4
(AM479642) Vitis vinifera contig VV78X252907.7, whole genome...    40   8.3    3
(CO859300) LM_SM5_000233 Locusta migratoria solitarious phas...    32   9.5    3
(AC126792) Medicago truncatula clone mth2-8o8, complete sequ...    36   9.7    6

>(BJ417764) Dictyostelium discoideum cDNA clone:ddv28o17, 5' end,
           single read.
          Length = 593

 Score = 1164 bits (587), Expect = 0.0
 Identities = 591/593 (99%)
 Strand = Plus / Plus


Query: 1   taatagtaataaaaaacaaaatgatgaaatcatcaaaagtttcaacaatattacttttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   taatagtaataaaaaacaaaatgatgaaatcatcaaaagtttcaacaatattacttttat 60


Query: 61  tatttgttgttataattggtagtttttgtttaacatatggtgcaccatcaacaaccaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tatttgttgttataattggtagtttttgtttaacatatggtgcaccatcaacaaccaacc 120


Query: 121 aaaaaccattaacatcaagcgaaaagaaactattgaatgatttatacgatagagcaaaga 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 121 aaaaaccattaacatcaagcgaaaagaaactatngaatgatttatacgatagagcaaaga 180


Query: 181 aagcaggtggtgtagttgaattcaaatcaaatttagattcaaagaaattcgttaccgctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagcaggtggtgtagttgaattcaaatcaaatttagattcaaagaaattcgttaccgctc 240


Query: 241 aaaatagaccatatgatttattagctcttttcacatcttctaatccaaaatatggttgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaatagaccatatgatttattagctcttttcacatcttctaatccaaaatatggttgta 300


Query: 301 gtggttgtgttcaattaaagaatcaaattgaatcattctcactttcatatgaaccatatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtggttgtgttcaattaaagaatcaaattgaatcattctcactttcatatgaaccatatt 360


Query: 361 taaattcagcaggatttttggagaaaccaatttttatcgttattttggaagtcgattata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 taaattcagcaggatttttggagaaaccaatttttatcgttattttggaagtcgattata 420


Query: 421 atatggaagtattccaaacaattggtttaaatacaattccacatttattattcataccaa 480
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 421 atatggaagtattccaaacaatnggtttaaatacaattccacatttattattcataccaa 480


Query: 481 gtggatcaaaaccaatcactcaaaaaggttatgcctacacaggtttcgaacaaacctctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gtggatcaaaaccaatcactcaaaaaggttatgcctacacaggtttcgaacaaacctctt 540


Query: 541 ctcaatcaatctctgatttcatttatagtcattcaaagattagaattgaacca 593
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctcaatcaatctctgatttcatttatagtcattcaaagattagaattgaacca 593

 Score = 63.9 bits (32), Expect = 1e-05
 Identities = 32/32 (100%)
 Strand = Plus / Plus


Query: 604 tttatagtcattcaaagattagaattgaacca 635
           ||||||||||||||||||||||||||||||||
Sbjct: 562 tttatagtcattcaaagattagaattgaacca 593

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,553,945,753
Number of extensions: 102966833
Number of successful extensions: 8619335
Number of sequences better than 10.0: 91
Length of query: 1226
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1202
Effective length of database: 97,308,875,965
Effective search space: 116965268909930
Effective search space used: 116965268909930
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.25
Homology vs Protein 
Query= Contig-U09345-1 (Contig-U09345-1Q) /CSM_Contig/Contig-U09345-1Q.Seq.d
         (1226 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54N33) RecName: Full=Dolichyl-diphosphooligosaccharide--protei...   438   e-121
AK028182_1(AK028182|pid:none) Mus musculus 10 days embryo whole ...    52   3e-05
AK088616_1(AK088616|pid:none) Mus musculus 2 days neonate thymus...    52   3e-05
BC095153_1(BC095153|pid:none) Danio rerio zgc:110044, mRNA (cDNA...    51   1e-04
DQ216319_1(DQ216319|pid:none) Taeniopygia guttata clone 0058P000...    50   1e-04
(Q13454) RecName: Full=Tumor suppressor candidate 3; AltName: Fu...    50   1e-04
DQ216320_1(DQ216320|pid:none) Taeniopygia guttata clone 0058P005...    50   1e-04
DQ440030_1(DQ440030|pid:none) Aedes aegypti clone AE-258 oligosa...    50   1e-04
BC010370_1(BC010370|pid:none) Homo sapiens tumor suppressor cand...    50   1e-04
AC005882_15(AC005882|pid:none) Arabidopsis thaliana chromosome I...    50   2e-04
(Q32L57) RecName: Full=Tumor suppressor candidate 3;  &BC109753_...    48   6e-04
CR382136_70(CR382136|pid:none) Debaryomyces hansenii strain CBS7...    47   0.001
AE014134_1521(AE014134|pid:none) Drosophila melanogaster chromos...    47   0.001
(Q63ZR0) RecName: Full=Magnesium transporter protein 1;         ...    44   0.009
AK075394_1(AK075394|pid:none) Homo sapiens cDNA PSEC0084 fis, cl...    42   0.044
AK294943_1(AK294943|pid:none) Homo sapiens cDNA FLJ56344 complet...    42   0.044
(Q9H0U3) RecName: Full=Magnesium transporter protein 1;         ...    42   0.044
AL138743_2(AL138743|pid:none) Human DNA sequence from clone RP11...    42   0.044
AK223131_1(AK223131|pid:none) Homo sapiens mRNA for implantation...    42   0.044
AF275675_1(AF275675|pid:none) Aedes triseriatus clone ATE-004 un...    42   0.044
CR857566_1(CR857566|pid:none) Pongo abelii mRNA; cDNA DKFZp469A0...    42   0.058
AE016818_752(AE016818|pid:none) Ashbya gossypii (= Eremothecium ...    40   0.13
AK012185_1(AK012185|pid:none) Mus musculus 10 days embryo whole ...    40   0.17
AL670660_13(AL670660|pid:none) Mouse DNA sequence from clone RP2...    40   0.17
AL670660_12(AL670660|pid:none) Mouse DNA sequence from clone RP2...    40   0.17
(P34669) RecName: Full=Uncharacterized protein ZK686.3;  &L17337...    40   0.17
(Q9CQY5) RecName: Full=Magnesium transporter protein 1;         ...    40   0.17
BT040196_1(BT040196|pid:none) Zea mays full-length cDNA clone ZM...    40   0.17
FJ362381_7(FJ362381|pid:none) Caenorhabditis sp. PS1010 contig J...    39   0.29
CU928171_347(CU928171|pid:none) Kluyveromyces thermotolerans str...    38   0.84
AE009948_940(AE009948|pid:none) Streptococcus agalactiae 2603V/R...    38   0.84
CU928158_3239(CU928158|pid:none) Escherichia fergusonii ATCC 354...    37   1.9
AC016781_17(AC016781|pid:none) Oryza sativa (japonica cultivar-g...    37   1.9
CP000361_1310(CP000361|pid:none) Arcobacter butzleri RM4018, com...    36   2.4
(P48439) RecName: Full=Dolichyl-diphosphooligosaccharide--protei...    36   2.4
AC011661_23(AC011661|pid:none) Genomic sequence for Arabidopsis ...    36   3.2
AM398681_1041(AM398681|pid:none) Flavobacterium psychrophilum JI...    35   4.1
CP001205_58(CP001205|pid:none) Borrelia burgdorferi ZS7, complet...    35   4.1
CP000025_297(CP000025|pid:none) Campylobacter jejuni RM1221, com...    35   4.1
AE015928_1456(AE015928|pid:none) Bacteroides thetaiotaomicron VP...    35   4.1
(O51088) RecName: Full=Thioredoxin;          Short=Trx;  &AE0007...    35   4.1
AF284062_1(AF284062|pid:none) Penicillium marneffei homeodomain ...    35   4.1
DQ158856_21(DQ158856|pid:none) Bigelowiella natans nucleomorph c...    35   4.1
CU633455_41(CU633455|pid:none) Podospora anserina genomic DNA ch...    35   5.4
AB084063_1(AB084063|pid:none) Campylobacter coli gyrB gene for g...    35   7.1
CP001407_984(CP001407|pid:none) Bacillus cereus 03BB102, complet...    35   7.1
AM920436_1141(AM920436|pid:none) Penicillium chrysogenum Wiscons...    35   7.1
AY545549_4(AY545549|pid:none) Spadella cephaloptera mitochondrio...    35   7.1
AP009049_1586(AP009049|pid:none) Clostridium kluyveri NBRC 12016...    35   7.1
CP000682_935(CP000682|pid:none) Metallosphaera sedula DSM 5348, ...    35   7.1
CP000140_1864(CP000140|pid:none) Parabacteroides distasonis ATCC...    35   7.1
CR382123_601(CR382123|pid:none) Kluyveromyces lactis strain NRRL...    35   7.1
CP000768_1426(CP000768|pid:none) Campylobacter jejuni subsp. doy...    35   7.1
CP000485_905(CP000485|pid:none) Bacillus thuringiensis str. Al H...    35   7.1
DQ986218_1(DQ986218|pid:none) Borrelia afzelii strain A26S thior...    34   9.2
CP000395_59(CP000395|pid:none) Borrelia afzelii PKo, complete ge...    34   9.2
DQ986220_1(DQ986220|pid:none) Borrelia afzelii ACA-1 strain ACA1...    34   9.2
AY728226_2(AY728226|pid:none) Aneides hardii mitochondrion, comp...    34   9.2
AL844504_130(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    34   9.2
CP000361_1063(CP000361|pid:none) Arcobacter butzleri RM4018, com...    34   9.2
CU928175_638(CU928175|pid:none) Zygosaccharomyces rouxii strain ...    34   9.2

>(Q54N33) RecName: Full=Dolichyl-diphosphooligosaccharide--protein
           glycosyltransferase subunit 3;
          Length = 351

 Score =  438 bits (1127), Expect = e-121
 Identities = 230/259 (88%), Positives = 231/259 (89%)
 Frame = +3

Query: 21  MMKSSKVSTILLLLFVVIIGSFCLTYGAPSTTNQKPLTSSEKKLLNDLYDRAKKAGGVVE 200
           MMKSSKVSTILLLLFVVIIGSFCLTYGAPSTTNQKPLTSSEKKLLNDLYDRAKKAGGVVE
Sbjct: 1   MMKSSKVSTILLLLFVVIIGSFCLTYGAPSTTNQKPLTSSEKKLLNDLYDRAKKAGGVVE 60

Query: 201 FKSNLDSKKFVTAQNRPYDLLALFTSSNPKYGCSGCVQLKNQIESFSLSYEPYLNSAGFL 380
           FKSNLDSKKFVTAQNRPYDLLALFTSSNPKYGCSGCVQLKNQIESFSLSYEPYLNSAGFL
Sbjct: 61  FKSNLDSKKFVTAQNRPYDLLALFTSSNPKYGCSGCVQLKNQIESFSLSYEPYLNSAGFL 120

Query: 381 EKPIFIVILEVDYNMEVFQTIGLNTIPHLLFIPSGSKPITQKGYAYTGFEQTSSQSISDF 560
           EKPIFIVILEVDYNMEVFQTIGLNTIPHLLFIPSGSKPITQKGYAYTGFEQTSSQSISDF
Sbjct: 121 EKPIFIVILEVDYNMEVFQTIGLNTIPHLLFIPSGSKPITQKGYAYTGFEQTSSQSISDF 180

Query: 561 IYSHSKIRIEPXXXXYSHSKIRIEPVKTFYEKYSVQILSFVVFLASVRFLITAYRKRKSP 740
           IYSH              SKIRIEPVKTFYEKYSVQILSFVVFLASVRFLITAYRKRKSP
Sbjct: 181 IYSH--------------SKIRIEPVKTFYEKYSVQILSFVVFLASVRFLITAYRKRKSP 226

Query: 741 NVLVFLNNFIIRMRYYGYF 797
               FL   +      G F
Sbjct: 227 MFWYFLTILLFACVIMGIF 245

 Score =  263 bits (673), Expect = 7e-69
 Identities = 130/166 (78%), Positives = 141/166 (84%)
 Frame = +1

Query: 619  RLELNQLKHFMKNIQFKF*ALLYF*HQLDSLLLPIEKEKVPMFWYFLTILLFACVIMGIF 798
            ++ +  +K F +    +  + + F   +  L+    K K PMFWYFLTILLFACVIMGIF
Sbjct: 186  KIRIEPVKTFYEKYSVQILSFVVFLASVRFLITAYRKRKSPMFWYFLTILLFACVIMGIF 245

Query: 799  YDFIHKPNFYEFDHRQQTYNYFSRGSRSQTVSEGMIMGVSTMAITLILVFLSDILPNYTN 978
            YDFIHKPNFYEFDHRQQTYNYFSRGSRSQTVSEGMIMGVST+AITLI VFLSDILPNYTN
Sbjct: 246  YDFIHKPNFYEFDHRQQTYNYFSRGSRSQTVSEGMIMGVSTIAITLIFVFLSDILPNYTN 305

Query: 979  FSSKSKGLLFFMGMSSIIVLLFFQSLAFQIKYYRPLFFIPSVTYHY 1116
            FSSKSKGLLFFMGMSSIIVLLFFQSLAFQIKYYRPLFFIPSVTYHY
Sbjct: 306  FSSKSKGLLFFMGMSSIIVLLFFQSLAFQIKYYRPLFFIPSVTYHY 351

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,795,344,325
Number of extensions: 34672700
Number of successful extensions: 91183
Number of sequences better than 10.0: 61
Number of HSP's gapped: 91104
Number of HSP's successfully gapped: 62
Length of query: 408
Length of database: 1,040,966,779
Length adjustment: 131
Effective length of query: 277
Effective length of database: 621,205,444
Effective search space: 172073907988
Effective search space used: 172073907988
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.78  gvh: 0.81  alm: 0.17  top: 0.27  tms: 0.13  mit: 0.40  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: endoplasmic reticulum
	 32.0 %: mitochondrial
	 12.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U09345-1 is end
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0