| Contig-U01562-1 |
| Contig ID |
Contig-U01562-1 |
| Contig update |
2002. 9.13 |
| Contig sequence |
 |
| Gap |
gap included |
| Contig length |
851 |
| Chromosome number (1..6, M) |
4 |
| Chromosome length |
5430582 |
| Start point |
5374982 |
| End point |
5374187 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
3 |
| Number of EST |
4 |
| Link to clone list |
U01562 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6. 7 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 5. 1 |
| Homology vs DNA |
Query= Contig-U01562-1 (Contig-U01562-1Q) /CSM_Contig/Contig-U01562-1Q.Seq.d
(861 letters)
Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(C92477) Dictyostelium discoideum slug cDNA, clone SSE620. 928 0.0 2
(AU037224) Dictyostelium discoideum slug cDNA, clone SSB630. 581 0.0 2
(AU071737) Dictyostelium discoideum slug cDNA, clone SSC418. 476 e-130 1
(AU071485) Dictyostelium discoideum slug cDNA, clone SSB630. 192 2e-47 2
(C84172) Dictyostelium discoideum slug cDNA, clone SSC418. 64 9e-06 1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 44 2e-05 17
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 42 3e-04 11
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 42 0.028 14
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com... 42 0.028 14
(CP000994) Borrelia recurrentis A1 plasmid pl124, complete s... 38 0.035 6
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 36 0.051 13
(AU269207) Dictyostelium discoideum vegetative cDNA clone:VS... 44 0.097 2
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 34 0.11 10
(AC006785) Caenorhabditis elegans clone Y48G1, *** SEQUENCIN... 38 0.11 9
(EJ995190) 1093023082728 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.12 2
(EK218968) 1095460133009 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.12 2
(EJ957091) 1093018978249 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.14 2
(AC139344) Medicago truncatula clone mth2-34b22, complete se... 36 0.17 7
(CP000742) Methanococcus vannielii SB, complete genome. 34 0.19 18
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 34 0.27 17
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 34 0.31 11
(BD061520) Genome DNA of symbiotic bacteria of aphid. 34 0.34 14
(AR409405) Sequence 1 from patent US 6632935. 34 0.34 14
(BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum... 34 0.34 14
(CP001158) Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisu... 34 0.35 14
(CP001161) Buchnera aphidicola str. 5A (Acyrthosiphon pisum)... 34 0.35 14
(AM447878) Vitis vinifera contig VV78X075978.6, whole genome... 32 0.35 4
(BH591536) BOGFU58TR BOGF Brassica oleracea genomic clone BO... 38 0.37 2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 36 0.41 12
(CC451444) ZMMBBc0333J22f ZMMBBc Zea mays subsp. mays genomi... 34 0.41 2
(AF362369) Dictyostelium discoideum histidine kinase DhkG (d... 34 0.45 6
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9... 34 0.46 12
(CP000393) Trichodesmium erythraeum IMS101, complete genome. 38 0.51 18
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 38 0.52 15
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 34 0.53 18
(AB261659) Scleria parvula chloroplast ndhF gene for NADH de... 48 0.56 1
(AC195197) Zea mays chromosome 8 clone ZMMBBb-124E2; ZMMBBb0... 48 0.56 1
(AC186514) Zea mays chromosome 8 clone CH201-5G4; ZMMBBc0005... 48 0.56 1
(EJ945639) 1093018911684 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.56 1
(EC821476) SME00007710 esmbsro2 Sawyeria marylandensis cDNA,... 48 0.56 1
(AX346546) Sequence 1617 from Patent WO0200928. 38 0.60 3
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 38 0.64 16
(FK041864) XABT37987.b2 Gateway compatible cien cDNA library... 36 0.68 2
(EA696374) Sequence 75253 from patent US 7365185. 36 0.69 3
(EK182557) 1095458129241 Global-Ocean-Sampling_GS-31-01-01-1... 38 0.69 3
(CR382398) Plasmodium falciparum chromosome 6, complete sequ... 38 0.71 13
(CP000312) Clostridium perfringens SM101, complete genome. 40 0.72 17
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 34 0.76 10
(AC155063) Bos taurus clone CH240-27D2, WORKING DRAFT SEQUEN... 44 1.0 2
(AC197194) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB... 34 1.2 2
(AM479615) Vitis vinifera contig VV78X260950.5, whole genome... 34 1.2 4
(AC207361) Zea mays chromosome 8 clone CH201-116L16; ZMMBBc0... 38 1.3 3
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 32 1.4 10
(CR847529) Zebrafish DNA sequence from clone DKEY-1C11 in li... 46 1.5 5
(AJ235272) Rickettsia prowazekii strain Madrid E, complete g... 34 1.5 10
(AM463590) Vitis vinifera contig VV78X163815.12, whole genom... 32 1.5 4
(CP001279) Nautilia profundicola AmH, complete genome. 34 1.5 17
(EK013503) 1092955214423 Global-Ocean-Sampling_GS-31-01-01-1... 44 1.6 2
(AM609759) Entamoeba invadens IP1 GSS, clone inv105d02.p1k. 36 1.6 2
(FH313110) CHO_OF4482xm05f1.ab1 CHO_OF4 Nicotiana tabacum ge... 40 1.6 2
(EJ021627) 1095448006124 Global-Ocean-Sampling_GS-26-01-01-1... 44 1.9 2
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 34 1.9 11
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 32 1.9 14
(AC216422) Populus trichocarpa clone POP107-N01, complete se... 38 2.0 6
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8... 36 2.0 9
(AC176542) Strongylocentrotus purpuratus clone R3-3075O11, W... 40 2.0 3
(FK239751) XABT164077.b1 Gateway compatible cien cDNA librar... 36 2.1 2
(DQ927305) Tetrahymena pigmentosa strain UM1060 mitochondrio... 34 2.1 6
(AC138145) Homo sapiens chromosome 17 clone RP11-971C1 map 1... 46 2.2 4
(BX897727) Zebrafish DNA sequence from clone DKEY-90A13 in l... 46 2.2 1
(AL807769) Zebrafish DNA sequence from clone CH211-197G8. 46 2.2 1
(AC102676) Mus musculus chromosome 14, clone RP23-266L19, co... 46 2.2 1
(CQ481192) Sequence 13059 from Patent WO0160860. 46 2.2 1
(AC087314) Homo sapiens 12 BAC RP11-328P13 (Roswell Park Can... 46 2.2 1
(AC025521) Homo sapiens chromosome 17, clone RP11-579A4, com... 46 2.2 1
(AC114081) Rattus norvegicus clone CH230-70H3, *** SEQUENCIN... 46 2.2 1
(AC111341) Rattus norvegicus clone CH230-239J23, *** SEQUENC... 46 2.2 1
(AC110639) Rattus norvegicus clone CH230-50G21, *** SEQUENCI... 46 2.2 1
(AC010882) Homo sapiens chromosome 12 clone RP11-328P13, WOR... 46 2.2 1
(AQ799040) HS_5441_B2_C05_T7A RPCI-11 Human Male BAC Library... 46 2.2 1
(ER515765) 1093015501043 Global-Ocean-Sampling_GS-35-01-01-1... 46 2.2 1
(AQ168594) HS_3165_B2_B06_T7 CIT Approved Human Genomic Sper... 46 2.2 1
(ED461768) AUAC-aam67a07.g1 Ascaris suum whole genome shotgu... 46 2.2 1
(DH796379) Rattus norvegicus DNA, BAC clone: RNB1-390B24, 5'... 46 2.2 1
(CZ887459) fbnb003e006b03f0 Brassica napus methylation filte... 46 2.2 1
(CZ515102) GMW2-86A13a.g1 GMW2 Glycine max genomic, genomic ... 46 2.2 1
(CJ455373) Macaca fascicularis mRNA, clone: QflA-21153, 5' e... 46 2.2 1
(AE017263) Mesoplasma florum L1 complete genome. 46 2.2 1
(CP000849) Rickettsia bellii OSU 85-389, complete genome. 34 2.5 16
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 32 2.5 18
(AC131876) Rattus norvegicus clone CH230-345N13, *** SEQUENC... 40 2.5 3
(AC196751) Citrus sinensis clone CSRBBa-018K20, WORKING DRAF... 32 2.5 8
(AC040949) Homo sapiens chromosome 18 clone RP11-331E2 map 1... 38 2.6 6
(FH188008) CHO_OF3437xe15r1.ab1 CHO_OF3 Nicotiana tabacum ge... 34 2.7 3
(AC025599) Homo sapiens chromosome 8, clone RP11-508K19, com... 38 2.7 6
(AC193887) Trichinella spiralis BAC clone TS195-21H12 from c... 32 2.7 8
(EJ371818) 1092963727123 Global-Ocean-Sampling_GS-28-01-01-1... 38 2.8 3
(AC180459) Strongylocentrotus purpuratus clone R3-3102B24, W... 44 2.9 4
(EA665641) Sequence 44520 from patent US 7365185. 36 2.9 2
(FJ384796) Bombyx mandarina strain Qingzhou mitochondrion, c... 44 2.9 3
(AC206031) Zea mays chromosome 1 clone CH201-237B6; ZMMBBc02... 36 3.1 4
(AM466393) Vitis vinifera contig VV78X210821.22, whole genom... 32 3.2 5
(AZ690821) ENTJR83TR Entamoeba histolytica Sheared DNA Entam... 34 3.2 3
(AC162470) Bos taurus clone CH240-121B16, WORKING DRAFT SEQU... 34 3.4 8
(AC177220) Strongylocentrotus purpuratus clone R3-40G11, WOR... 44 3.4 3
(AL111168) Campylobacter jejuni subsp. jejuni NCTC 11168 com... 34 3.4 21
(FP074865) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 3.4 6
(CR548612) Paramecium tetraurelia macronuclear largest chrom... 32 3.5 16
(AC200073) Pan troglodytes chromosome 7 clone CH251-420K4, W... 42 3.5 3
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 34 3.7 9
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 36 3.8 7
(CR376860) Zebrafish DNA sequence from clone DKEY-111H22 in ... 32 4.2 2
(CP000025) Campylobacter jejuni RM1221, complete genome. 36 4.3 18
(CU302301) Zebrafish DNA sequence from clone CH211-178D20 in... 32 4.3 2
(AP009763) Lotus japonicus genomic DNA, clone: LjT09J11, TM1... 32 4.3 2
(AF298208) Dictyostelium discoideum transposon thug-T, compl... 36 4.4 3
(X63783) T.thermophila genes for snRNA U1-1, snRNA U1-2, snR... 44 4.4 2
(AC206315) Zea mays chromosome 5 clone CH201-10E5; ZMMBBc001... 34 4.5 5
(FC748526) CBBI3976.rev CBBI Lottia gigantea 26h,37h,61h Lar... 38 4.7 2
(CP000743) Methanococcus aeolicus Nankai-3, complete genome. 36 4.8 17
(AM442510) Vitis vinifera contig VV78X169137.9, whole genome... 34 4.9 2
(AM458389) Vitis vinifera contig VV78X258345.4, whole genome... 34 5.0 2
(AE002126) Ureaplasma parvum serovar 3 str. ATCC 700970 sect... 42 5.1 3
(CU928467) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.1 4
(DX460956) Cpl02636 Papaya Genomic DNA BAC Library Carica pa... 32 5.1 3
(DQ185528) Cabomba sp. CL-2005 tRNA-Lys (trnK) gene, partial... 44 5.2 2
(DQ185527) Cabomba caroliniana tRNA-Lys (trnK) gene, partial... 44 5.2 2
(CU929994) Brassica rapa subsp. pekinensis clone KBrB065G08,... 38 5.5 4
(EK553163) 1095516135582 Global-Ocean-Sampling_GS-32-01-01-1... 34 5.6 2
(EK554417) 1095516151326 Global-Ocean-Sampling_GS-32-01-01-1... 34 5.7 2
(EK531375) 1095516009590 Global-Ocean-Sampling_GS-32-01-01-1... 34 5.7 2
(ER518877) 1093015540218 Global-Ocean-Sampling_GS-35-01-01-1... 34 5.7 2
(EK272990) 1095462265525 Global-Ocean-Sampling_GS-31-01-01-1... 34 5.7 2
(FC777699) CBGC10605.fwd CBGC Lottia gigantea 15h 18h embryo... 34 5.7 2
(FC777698) CBGC10605.rev CBGC Lottia gigantea 15h 18h embryo... 34 5.7 2
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s... 32 5.8 10
(EJ010891) 1095403698687 Global-Ocean-Sampling_GS-26-01-01-1... 40 5.8 2
(AC152057) Medicago truncatula chromosome 8 clone mth2-25a12... 36 5.9 6
(EJ474833) 1095403434027 Global-Ocean-Sampling_GS-28-01-01-1... 40 6.1 2
(AC187580) Zea mays chromosome unknown clone ZMMBBb-578C16; ... 36 6.4 3
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771... 34 6.6 5
(ER377776) 1093047005130 Global-Ocean-Sampling_GS-34-01-01-1... 36 6.6 2
(EJ499687) 1095403608580 Global-Ocean-Sampling_GS-28-01-01-1... 40 6.6 2
(CU681842) Zebrafish DNA sequence from clone CH73-338O16 in ... 36 6.8 4
(DQ642846) Plasmodium falciparum HB3 apicoplast, complete ge... 30 6.8 5
(AC185585) Zea mays chromosome 1 clone ZMMBBb-572N7; ZMMBBb0... 36 7.0 3
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 32 7.1 11
(CO479063) GQ0175.B7_C16 GQ017: Immature somatic EMBRYOS Pic... 38 7.1 2
(CU633433) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 7.2 7
(DJ386667) Diagnosis of Diseases Associated with Metastasis. 40 7.2 2
(AX281463) Sequence 127 from Patent WO0177376. 40 7.2 2
(AF083031) Guillardia theta nucleomorph chromosome 3, comple... 30 7.3 11
(EK007784) 1092955122706 Global-Ocean-Sampling_GS-31-01-01-1... 32 7.4 3
(AC168653) Strongylocentrotus purpuratus clone R3-3017B17, W... 34 7.5 5
(AC206288) Zea mays chromosome 9 clone CH201-168B13; ZMMBBc0... 36 7.5 6
(CB282880) BT1148 Blomia tropicalis cDNA library Blomia trop... 42 7.6 2
(EU369760) Carica papaya X chromosome BAC clone DM10G24, com... 38 7.8 5
(CU469568) Zebrafish DNA sequence from clone CH73-80E5 in li... 38 7.9 2
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 34 7.9 8
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s... 30 7.9 13
(AC149634) Medicago truncatula clone mth2-5i17, complete seq... 38 8.0 4
(EL348650) CCEL4754.b1_D13.ab1 CCE(LMS) endive Cichorium end... 32 8.0 3
(CP000882) Hemiselmis andersenii chromosome 2, complete sequ... 32 8.3 8
(AP010559) Lotus japonicus genomic DNA, clone: LjT15F22, TM2... 42 8.3 2
(AC215245) Zea mays chromosome 7 clone CH201-245P16; ZMMBBc0... 34 8.5 4
(EH683855) CCIL8545.b1_B01.ab1 CCI(LMS) chicory Cichorium in... 32 8.6 3
(EH673050) CCIL10687.b1_N08.ab1 CCI(LMS) chicory Cichorium i... 32 8.7 3
(CT030027) Zebrafish DNA sequence from clone CH73-81K8 in li... 44 8.8 1
(BX927247) Zebrafish DNA sequence from clone CH211-189K22 in... 44 8.8 1
(BX649532) Zebrafish DNA sequence from clone CH211-260H3 in ... 44 8.8 1
(BX571811) Zebrafish DNA sequence from clone CH211-194P6. 44 8.8 1
(BX284688) Zebrafish DNA sequence from clone DKEY-71K16 in l... 44 8.8 1
(AC161466) Gallus gallus BAC clone CH261-104N11 from chromos... 44 8.8 1
(BV768286) pRRL2:Newb:20080411:143367 USMARC Pig Breed SNP D... 44 8.8 1
(AC125118) Mus musculus BAC clone RP24-264B17 from chromosom... 44 8.8 1
(AC124382) Mus musculus BAC clone RP24-409N22 from chromosom... 44 8.8 1
(AM487092) Vitis vinifera contig VV78X259121.1, whole genome... 44 8.8 1
(AF543729) Cabomba caroliniana maturase K (matK) gene, parti... 44 8.8 1
(AF108719) Cabomba caroliniana maturase K (matK) gene, chlor... 44 8.8 1
(AX770909) Sequence 40 from Patent WO02094867. 44 8.8 1
(Z74036) Caenorhabditis elegans Cosmid F55C10. 44 8.8 1
(AF482962) Dictyostelium discoideum ABC transporter AbcH.3 (... 44 8.8 1
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 44 8.8 1
(AB070264) Bombyx mori mitochondrial DNA, complete genome, s... 44 8.8 1
(AC087284) Homo sapiens chromosome 15, clone RP11-617F23, co... 44 8.8 1
(AC068896) Homo sapiens chromosome 10 clone RP11-464O2, comp... 44 8.8 1
(AC156781) Rhinolophus ferrumequinum clone VMRC7-385E10, WOR... 44 8.8 1
(AC141801) Apis mellifera clone CH224-61C20, WORKING DRAFT S... 44 8.8 1
(AC115391) Rattus norvegicus clone CH230-221E5, WORKING DRAF... 44 8.8 1
(AC096465) Rattus norvegicus clone CH230-111C21, *** SEQUENC... 44 8.8 1
(AC094642) Rattus norvegicus clone CH230-5B17, *** SEQUENCIN... 44 8.8 1
(AC027638) Homo sapiens chromosome 15 clone RP11-617F23, WOR... 44 8.8 1
(AC230191) Bos taurus clone CH240-518K7, WORKING DRAFT SEQUE... 44 8.8 1
(AC224826) Bos taurus clone CH240-475K13, WORKING DRAFT SEQU... 44 8.8 1
(AC220734) Bos taurus clone CH240-348F20, WORKING DRAFT SEQU... 44 8.8 1
(AC217867) Pteropus vampyrus clone CH279-157E18, WORKING DRA... 44 8.8 1
(AC204188) Eulemur macaco macaco clone CH273-137L18, WORKING... 44 8.8 1
(AC203493) Eulemur macaco macaco clone CH273-16H20, WORKING ... 44 8.8 1
(AC183137) Bos taurus clone CH240-103D12, WORKING DRAFT SEQU... 44 8.8 1
(AC182982) Bos taurus clone CH240-193P18, WORKING DRAFT SEQU... 44 8.8 1
(AC181755) Strongylocentrotus purpuratus clone R3-1036L20, W... 44 8.8 1
(AC173655) Bos taurus clone CH240-392B23, WORKING DRAFT SEQU... 44 8.8 1
(AC023517) Homo sapiens clone RP11-10P15, WORKING DRAFT SEQU... 44 8.8 1
(AY432379) Aedes aegypti ASAP ID: 43251 unknown mRNA sequence. 44 8.8 1
(FH183355) CHO_OF3424xl20f1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 8.8 1
(FH144919) CHO_OF3722xk18r1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 8.8 1
(FH144860) CHO_OF3722xk18f1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 8.8 1
(FH016741) CHO_OF447xc02r1.ab1 CHO_OF Nicotiana tabacum geno... 44 8.8 1
(FH016662) CHO_OF447xc02f2.ab1 CHO_OF Nicotiana tabacum geno... 44 8.8 1
(ET735711) CHO_OF182xk15r1.ab1 CHO_OF Nicotiana tabacum geno... 44 8.8 1
(AQ007916) CIT-HSP-2292C13.TF CIT-HSP Homo sapiens genomic c... 44 8.8 1
(AM632465) Entamoeba dispar GSS, clone dispar87h01.q1k. 44 8.8 1
(EJ704369) 1092956047396 Global-Ocean-Sampling_GS-30-02-01-1... 44 8.8 1
(EJ669164) 1092955052038 Global-Ocean-Sampling_GS-30-02-01-1... 44 8.8 1
(EJ622348) 1092963091983 Global-Ocean-Sampling_GS-29-01-01-1... 44 8.8 1
(ED830039) Ynhw20835 HW-YUBAC Bos taurus genomic clone HW-YU... 44 8.8 1
(ED681118) GM_WBb0014D04.f GM_WBb Glycine max genomic clone ... 44 8.8 1
(DU889329) 387349 Tomato HindIII BAC Library Solanum lycoper... 44 8.8 1
(AL315076) Tetraodon nigroviridis genome survey sequence SP6... 44 8.8 1
(AL211957) Tetraodon nigroviridis genome survey sequence T7 ... 44 8.8 1
(CU944741) Brassica napus GSS, clone JBnB055O17, end read, p... 44 8.8 1
(CE048376) tigr-gss-dog-17000357514982 Dog Library Canis lup... 44 8.8 1
(CC929352) ZMMBBc0537I18f ZMMBBc Zea mays subsp. mays genomi... 44 8.8 1
(BZ284024) CH230-336K3.TJB CHORI-230 Segment 2 Rattus norveg... 44 8.8 1
(AG431642) Mus musculus molossinus DNA, clone:MSMg01-307D06.... 44 8.8 1
(EL470263) CHTS8892.b3_G15.ab1 CHT(LMS) Jerusalem artichoke ... 44 8.8 1
(EL460655) CHTS14951.b1_N18.ab1 CHT(LMS) Jerusalem artichoke... 44 8.8 1
(AU204563) Caenorhabditis elegans cDNA clone:yk839a06 : 5' e... 44 8.8 1
(AU112311) Caenorhabditis elegans cDNA clone:yk741c2 : 5' en... 44 8.8 1
(AU112285) Caenorhabditis elegans cDNA clone:yk740h6 : 5' en... 44 8.8 1
(CB401004) OSTF186C11_1 AD-wrmcDNA Caenorhabditis elegans cD... 44 8.8 1
(BJ799786) Caenorhabditis elegans cDNA clone:yk1430d02 : 5' ... 44 8.8 1
(CP000963) Clostridium botulinum A3 str. Loch Maree plasmid ... 44 8.8 1
(CP000866) Nitrosopumilus maritimus SCM1, complete genome. 44 8.8 1
(BX571870) Photorhabdus luminescens subsp. laumondii TTO1 co... 44 8.8 1
(AP008971) Finegoldia magna ATCC 29328 DNA, complete genome. 44 8.8 1
(AM285308) Spiroplasma citri GII3-3X chromosome, contig Cont... 44 8.8 1
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 34 8.8 8
(EJ785315) 1093017311090 Global-Ocean-Sampling_GS-30-02-01-1... 32 8.9 3
(DN050162) JGI_CABA6119.rev NIH_XGC_tropKid1 Xenopus (Silura... 36 8.9 3
(BX323593) Zebrafish DNA sequence from clone DKEY-107I18 in ... 40 9.0 4
(EL371388) CCEL13405.b1_J16.ab1 CCE(LMS) endive Cichorium en... 32 9.1 3
(AX926711) Sequence 1 from Patent WO03084989. 36 9.2 8
(AC162231) Bos taurus clone CH240-112A3, WORKING DRAFT SEQUE... 36 9.5 6
(EL346664) CCEL2818.b1_D09.ab1 CCE(LMS) endive Cichorium end... 32 9.6 3
(AC005181) Homo sapiens chromosome 17, clone hRPK.1003_J_3, ... 36 9.7 5
(AC100844) Homo sapiens chromosome 18, clone RP11-659F24, co... 38 9.7 6
>(C92477) Dictyostelium discoideum slug cDNA, clone SSE620.
Length = 566
Score = 928 bits (468), Expect(2) = 0.0
Identities = 470/471 (99%)
Strand = Plus / Plus
Query: 256 taatattaagttcggaatttcatcaacgtgaaccattaaattttgataaattattattaa 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 taatattaagttcggaatttcatcaacgtgaaccattaaattttgataaattattattaa 61
Query: 316 cagataatgattcttcaaattttgatactcttagagaatattcaaaatcaaaattatgta 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 cagataatgattcttcaaattttgatactcttagagaatattcaaaatcaaaattatgta 121
Query: 376 atcttttattttcaatggaattacataatagattggataatttaaagaataataatatta 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 atcttttattttcaatggaattacataatagattggataatttaaagaataataatatta 181
Query: 436 gagtgaattcacttcatcctggttatttaagaactccaataaatagagatttaagttggt 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gagtgaattcacttcatcctggttatttaagaactccaataaatagagatttaagttggt 241
Query: 496 tcactagacatatcattgcaccaatattcttttttggttatggttcaaaaactgaagata 555
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tcactagacatatcattgcnccaatattcttttttggttatggttcaaaaactgaagata 301
Query: 556 caatcaatggaattgttaatttaattgaaaataattcaaatcattctggtaaatattttt 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 caatcaatggaattgttaatttaattgaaaataattcaaatcattctggtaaatattttt 361
Query: 616 caatttcaaaagaaatttcaccttcaccatttgcttcaaatcttgaaaattctaaacttt 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 caatttcaaaagaaatttcaccttcaccatttgcttcaaatcttgaaaattctaaacttt 421
Query: 676 tatgggaaaaaacttgtgaattactttcaattagtaatgaattaaatttat 726
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tatgggaaaaaacttgtgaattactttcaattagtaatgaattaaatttat 472
Score = 101 bits (51), Expect(2) = 0.0
Identities = 51/51 (100%)
Strand = Plus / Plus
Query: 753 attattaacaagatatttttatagtaatcttgtaatattacatttttcaat 803
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 attattaacaagatatttttatagtaatcttgtaatattacatttttcaat 549
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,055,952,191
Number of extensions: 70352281
Number of successful extensions: 6369390
Number of sequences better than 10.0: 251
Length of query: 861
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 837
Effective length of database: 99,340,224,878
Effective search space: 83147768222886
Effective search space used: 83147768222886
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7.18 |
| Homology vs Protein |
Query= Contig-U01562-1 (Contig-U01562-1Q) /CSM_Contig/Contig-U01562-1Q.Seq.d
(861 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC082500_1(BC082500|pid:none) Xenopus tropicalis retinol dehydro... 73 1e-11
BC073189_1(BC073189|pid:none) Xenopus laevis MGC80425 protein, m... 71 5e-11
EF084767_1(EF084767|pid:none) Picea sitchensis clone WS02812_O10... 69 2e-10
BT051640_1(BT051640|pid:none) Medicago truncatula clone MTYF5_F6... 66 1e-09
AK341695_1(AK341695|pid:none) Acyrthosiphon pisum ACYPI002894 mR... 66 1e-09
BC155169_1(BC155169|pid:none) Danio rerio zgc:91936, mRNA (cDNA ... 66 2e-09
BC078374_1(BC078374|pid:none) Danio rerio zgc:91936, mRNA (cDNA ... 66 2e-09
AK227455_1(AK227455|pid:none) Arabidopsis thaliana mRNA for hypo... 65 3e-09
DQ068067_74(DQ068067|pid:none) Uncultured bacterium BAC13K9BAC, ... 65 4e-09
BT030011_1(BT030011|pid:none) Arabidopsis thaliana At4g23430 mRN... 64 6e-09
EF197847_17(EF197847|pid:none) Capsella rubella miR319a microRNA... 64 8e-09
FN320542_1(FN320542|pid:none) Schistosoma japonicum isolate Anhu... 64 8e-09
FN315257_1(FN315257|pid:none) Schistosoma japonicum isolate Anhu... 63 1e-08
AK034180_1(AK034180|pid:none) Mus musculus adult male diencephal... 63 1e-08
(Q8CEE7) RecName: Full=Retinol dehydrogenase 13; EC=1.1... 63 1e-08
FN357363_10(FN357363|pid:none) Schistosoma mansoni genome sequen... 63 1e-08
FN357363_11(FN357363|pid:none) Schistosoma mansoni genome sequen... 63 1e-08
AE013599_465(AE013599|pid:none) Drosophila melanogaster chromoso... 61 4e-08
FN320541_1(FN320541|pid:none) Schistosoma japonicum isolate Anhu... 61 4e-08
FN375969_1(FN375969|pid:none) Schistosoma mansoni genome sequenc... 61 5e-08
AE013599_468(AE013599|pid:none) Drosophila melanogaster chromoso... 60 7e-08
FN320540_1(FN320540|pid:none) Schistosoma japonicum isolate Anhu... 60 7e-08
(Q9HBH5) RecName: Full=Retinol dehydrogenase 14; EC=1.1... 60 9e-08
BC157371_1(BC157371|pid:none) Xenopus tropicalis retinol dehydro... 60 9e-08
AX118915_1(AX118915|pid:none) Sequence 79 from Patent WO0129221. 60 9e-08
BC155316_1(BC155316|pid:none) Danio rerio zgc:77906, mRNA (cDNA ... 60 9e-08
(Q8NBN7) RecName: Full=Retinol dehydrogenase 13; EC=1.1... 60 1e-07
AX179291_1(AX179291|pid:none) Sequence 4 from Patent WO0144446. ... 60 1e-07
AK075392_1(AK075392|pid:none) Homo sapiens cDNA PSEC0082 fis, cl... 60 1e-07
CR760254_1(CR760254|pid:none) Xenopus tropicalis finished cDNA, ... 60 1e-07
FN320536_1(FN320536|pid:none) Schistosoma japonicum isolate Anhu... 60 1e-07
AX179293_1(AX179293|pid:none) Sequence 6 from Patent WO0144446. 59 2e-07
AB439581_1(AB439581|pid:none) Cyprinus carpio rdh13 mRNA for ret... 59 2e-07
FN357363_9(FN357363|pid:none) Schistosoma mansoni genome sequenc... 59 3e-07
AM930554_1(AM930554|pid:none) Bos taurus partial mRNA for retino... 58 4e-07
BC082634_1(BC082634|pid:none) Xenopus laevis hypothetical LOC494... 58 4e-07
BC118441_1(BC118441|pid:none) Bos taurus retinol dehydrogenase 1... 58 4e-07
AC004684_3(AC004684|pid:none) Arabidopsis thaliana chromosome 2 ... 58 5e-07
AK062546_1(AK062546|pid:none) Oryza sativa Japonica Group cDNA c... 58 5e-07
AY088231_1(AY088231|pid:none) Arabidopsis thaliana clone 4578 mR... 58 5e-07
BT011616_1(BT011616|pid:none) Arabidopsis thaliana At5g04070 mRN... 57 6e-07
AC135794_5(AC135794|pid:none) Oryza sativa (japonica cultivar-gr... 57 6e-07
AK341729_1(AK341729|pid:none) Acyrthosiphon pisum ACYPI004818 mR... 57 6e-07
BT037764_1(BT037764|pid:none) Zea mays full-length cDNA clone ZM... 57 8e-07
BC154760_1(BC154760|pid:none) Danio rerio zgc:103654, mRNA (cDNA... 57 1e-06
EF148395_1(EF148395|pid:none) Populus trichocarpa x Populus delt... 57 1e-06
BC118145_1(BC118145|pid:none) Bos taurus retinol dehydrogenase 1... 56 1e-06
BC085576_1(BC085576|pid:none) Danio rerio zgc:103654, mRNA (cDNA... 56 1e-06
(Q9ERI6) RecName: Full=Retinol dehydrogenase 14; EC=1.1... 56 2e-06
EF083052_1(EF083052|pid:none) Picea sitchensis clone WS02717_C10... 56 2e-06
AK142290_1(AK142290|pid:none) Mus musculus 13 days embryo heart ... 56 2e-06
CP000777_2497(CP000777|pid:none) Leptospira biflexa serovar Pato... 56 2e-06
AE013599_470(AE013599|pid:none) Drosophila melanogaster chromoso... 55 2e-06
CP000686_3930(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 55 2e-06
BC066739_1(BC066739|pid:none) Danio rerio hypothetical protein L... 55 4e-06
BT047980_1(BT047980|pid:none) Salmo salar clone ssal-eve-560-320... 54 5e-06
AE014298_910(AE014298|pid:none) Drosophila melanogaster chromoso... 54 7e-06
CP000771_535(CP000771|pid:none) Fervidobacterium nodosum Rt17-B1... 54 9e-06
AK099949_1(AK099949|pid:none) Oryza sativa Japonica Group cDNA c... 54 9e-06
AL162971_13(AL162971|pid:none) Arabidopsis thaliana DNA chromoso... 54 9e-06
AY086643_1(AY086643|pid:none) Arabidopsis thaliana clone 26538 m... 54 9e-06
AY093050_1(AY093050|pid:none) Arabidopsis thaliana putative prot... 54 9e-06
EU975970_1(EU975970|pid:none) Zea mays clone 507157 unknown mRNA. 54 9e-06
AE014297_2599(AE014297|pid:none) Drosophila melanogaster chromos... 54 9e-06
CP000113_840(CP000113|pid:none) Myxococcus xanthus DK 1622, comp... 54 9e-06
BT048271_1(BT048271|pid:none) Salmo salar clone ssal-evd-564-186... 53 1e-05
(Q9NRF5) RecName: Full=WW domain-containing oxidoreductase; ... 53 1e-05
CP000804_3588(CP000804|pid:none) Roseiflexus castenholzii DSM 13... 53 1e-05
AK027626_1(AK027626|pid:none) Homo sapiens cDNA FLJ14720 fis, cl... 53 1e-05
AK298322_1(AK298322|pid:none) Homo sapiens cDNA FLJ56924 complet... 53 1e-05
BX470227_2(BX470227|pid:none) Zebrafish DNA sequence from clone ... 52 3e-05
BC076473_1(BC076473|pid:none) Danio rerio retinol dehydrogenase ... 52 3e-05
(Q5R9W5) RecName: Full=WW domain-containing oxidoreductase; ... 52 3e-05
AY488758_1(AY488758|pid:none) Pisum sativum short-chain dehydrog... 52 3e-05
BA000028_1722(BA000028|pid:none) Oceanobacillus iheyensis HTE831... 52 3e-05
AY902468_1(AY902468|pid:none) Gossypium hirsutum 3-ketoacyl-CoA ... 52 3e-05
BX571688_4(BX571688|pid:none) Zebrafish DNA sequence from clone ... 52 3e-05
BT062245_1(BT062245|pid:none) Zea mays full-length cDNA clone ZM... 52 3e-05
AY458632_11(AY458632|pid:none) Uncultured marine bacterium 311 c... 51 4e-05
BT046012_1(BT046012|pid:none) Salmo salar clone ssal-rgf-539-095... 51 4e-05
EU953084_1(EU953084|pid:none) Zea mays clone 1381494 unknown mRN... 51 4e-05
CP000909_3032(CP000909|pid:none) Chloroflexus aurantiacus J-10-f... 51 4e-05
(Q803A8) RecName: Full=WW domain-containing oxidoreductase; ... 51 4e-05
CP000686_15(CP000686|pid:none) Roseiflexus sp. RS-1, complete ge... 51 6e-05
AM458444_2(AM458444|pid:none) Vitis vinifera contig VV78X111317.... 50 7e-05
BX936423_3(BX936423|pid:none) Zebrafish DNA sequence from clone ... 50 7e-05
BC124473_1(BC124473|pid:none) Danio rerio si:dkey-174m14.2, mRNA... 50 7e-05
BC115207_1(BC115207|pid:none) Danio rerio si:dkey-174m14.2, mRNA... 50 7e-05
AE013599_466(AE013599|pid:none) Drosophila melanogaster chromoso... 50 7e-05
CP000551_1560(CP000551|pid:none) Prochlorococcus marinus str. AS... 50 7e-05
EU968283_1(EU968283|pid:none) Zea mays clone 318180 retinol dehy... 50 7e-05
BC095278_1(BC095278|pid:none) Danio rerio si:dkey-174m14.2, mRNA... 50 7e-05
BT073020_1(BT073020|pid:none) Oncorhynchus mykiss clone omyk-evn... 50 7e-05
CP000576_1550(CP000576|pid:none) Prochlorococcus marinus str. MI... 50 1e-04
AC020666_24(AC020666|pid:none) Oryza sativa chromosome 10 BAC OS... 50 1e-04
AF187014_1(AF187014|pid:none) Mus musculus WW-domain oxidoreduct... 50 1e-04
AY046556_1(AY046556|pid:none) Mus musculus WW-domain oxidoreduct... 50 1e-04
(Q91WL8) RecName: Full=WW domain-containing oxidoreductase; ... 50 1e-04
CP000825_1587(CP000825|pid:none) Prochlorococcus marinus str. MI... 50 1e-04
BC085423_1(BC085423|pid:none) Danio rerio zgc:101719, mRNA (cDNA... 49 2e-04
BT056709_1(BT056709|pid:none) Salmo salar clone ssal-rgb2-575-28... 49 2e-04
BT049948_1(BT049948|pid:none) Salmo salar clone ssal-eve-555-185... 49 2e-04
AE013599_469(AE013599|pid:none) Drosophila melanogaster chromoso... 49 2e-04
CP000431_5503(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 49 2e-04
AP008210_404(AP008210|pid:none) Oryza sativa (japonica cultivar-... 49 2e-04
EU962033_1(EU962033|pid:none) Zea mays clone 239740 retinol dehy... 49 3e-04
BC053255_1(BC053255|pid:none) Danio rerio zgc:64106, mRNA (cDNA ... 49 3e-04
CP000807_121(CP000807|pid:none) Cyanothece sp. ATCC 51142 linear... 49 3e-04
CU640366_1140(CU640366|pid:none) Podospora anserina genomic DNA ... 48 5e-04
AC140849_16(AC140849|pid:none) Medicago truncatula clone mth2-17... 48 5e-04
EU972546_1(EU972546|pid:none) Zea mays clone 383158 unknown mRNA. 48 5e-04
CP000582_55(CP000582|pid:none) Ostreococcus lucimarinus CCE9901 ... 48 5e-04
AE008691_1665(AE008691|pid:none) Thermoanaerobacter tengcongensi... 47 6e-04
CP000951_1458(CP000951|pid:none) Synechococcus sp. PCC 7002, com... 47 6e-04
CP001577_428(CP001577|pid:none) Micromonas sp. RCC299 chromosome... 47 8e-04
AM910993_232(AM910993|pid:none) Plasmodium knowlesi strain H chr... 47 8e-04
AK020927_1(AK020927|pid:none) Mus musculus adult retina cDNA, RI... 47 8e-04
CP000878_1469(CP000878|pid:none) Prochlorococcus marinus str. MI... 47 8e-04
(Q8BYK4) RecName: Full=Retinol dehydrogenase 12; EC=1.1... 47 8e-04
AY256821_1(AY256821|pid:none) Homo sapiens WOX8 isoform 8 (WWOX)... 47 8e-04
AP011115_5628(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 47 8e-04
BT059344_1(BT059344|pid:none) Salmo salar clone ssal-rgf-534-327... 47 8e-04
AF217490_1(AF217490|pid:none) Homo sapiens fragile 16D oxido red... 47 8e-04
AY596296_64(AY596296|pid:none) Haloarcula marismortui ATCC 43049... 47 8e-04
CR954201_580(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 47 0.001
BC095768_1(BC095768|pid:none) Danio rerio zgc:112332, mRNA (cDNA... 46 0.002
T19314(T19314) hypothetical protein C15H11.4 - Caenorhabditis el... 46 0.002
AC147959_21(AC147959|pid:none) Medicago truncatula clone mth2-11... 46 0.002
BC119823_1(BC119823|pid:none) Bos taurus WW domain containing ox... 46 0.002
CP000111_1582(CP000111|pid:none) Prochlorococcus marinus str. MI... 46 0.002
(P59837) RecName: Full=Retinol dehydrogenase 12; EC=1.1... 46 0.002
EU677729_1(EU677729|pid:none) Caenorhabditis brenneri clone 11A5... 45 0.002
CP000552_1523(CP000552|pid:none) Prochlorococcus marinus str. MI... 45 0.003
FN358977_1(FN358977|pid:none) Schistosoma mansoni genome sequenc... 45 0.003
CP000616_394(CP000616|pid:none) Burkholderia vietnamiensis G4 ch... 45 0.003
CP000581_602(CP000581|pid:none) Ostreococcus lucimarinus CCE9901... 45 0.003
AY048670_40(AY048670|pid:none) Streptomyces globisporus enediyne... 45 0.003
CR954202_551(CR954202|pid:none) Ostreococcus tauri strain OTTH05... 45 0.004
AP009493_613(AP009493|pid:none) Streptomyces griseus subsp. gris... 45 0.004
FJ390503_1(FJ390503|pid:none) Chorispora bungeana protochlorophy... 44 0.005
BT034665_1(BT034665|pid:none) Zea mays full-length cDNA clone ZM... 44 0.005
EU963402_1(EU963402|pid:none) Zea mays clone 261935 protochlorop... 44 0.005
AK019911_1(AK019911|pid:none) Mus musculus adult male pituitary ... 44 0.005
CP000097_2202(CP000097|pid:none) Synechococcus sp. CC9902, compl... 44 0.005
CP000820_6680(CP000820|pid:none) Frankia sp. EAN1pec, complete g... 44 0.005
BT036614_1(BT036614|pid:none) Zea mays full-length cDNA clone ZM... 44 0.005
AL662962_2(AL662962|pid:none) Oryza sativa genomic DNA, chromoso... 44 0.007
(Q96NR8) RecName: Full=Retinol dehydrogenase 12; EC=1.1... 44 0.007
BC025724_1(BC025724|pid:none) Homo sapiens retinol dehydrogenase... 44 0.007
AP008215_393(AP008215|pid:none) Oryza sativa (japonica cultivar-... 44 0.007
AP008957_4743(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 44 0.009
AK341387_1(AK341387|pid:none) Acyrthosiphon pisum ACYPI002667 mR... 44 0.009
AL035159_7(AL035159|pid:none) Mycobacterium leprae cosmid B1450.... 44 0.009
CR548612_94(CR548612|pid:none) Paramecium tetraurelia macronucle... 44 0.009
CP000875_3814(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 43 0.012
CP000838_119(CP000838|pid:none) Acaryochloris marina MBIC11017 p... 43 0.015
AP007174_183(AP007174|pid:none) Aspergillus oryzae RIB40 genomic... 43 0.015
(O48741) RecName: Full=Protochlorophyllide reductase C, chloropl... 43 0.015
AK319010_1(AK319010|pid:none) Arabidopsis thaliana AT1G03630 mRN... 43 0.015
CP000384_595(CP000384|pid:none) Mycobacterium sp. MCS, complete ... 42 0.020
CP000580_586(CP000580|pid:none) Mycobacterium sp. JLS, complete ... 42 0.020
CP000927_681(CP000927|pid:none) Caulobacter sp. K31, complete ge... 42 0.020
T15910(T15910) hypothetical protein E04F6.7 - Caenorhabditis ele... 42 0.020
S30167(S30167)protochlorophyllide reductase (EC 1.3.1.33) precur... 42 0.020
AM778937_3(AM778937|pid:none) Microcystis aeruginosa PCC 7806 ge... 42 0.026
BC019696_1(BC019696|pid:none) Homo sapiens dehydrogenase/reducta... 42 0.026
L22766_1(L22766|pid:none) MtNMedicago truncatula protochlorophyl... 42 0.026
AB074570_1(AB074570|pid:none) Nicotiana tabacum POR1 mRNA for NA... 42 0.026
AM420293_2896(AM420293|pid:none) Saccharopolyspora erythraea NRR... 42 0.034
AL669840_6(AL669840|pid:none) Mouse DNA sequence from clone RP23... 42 0.034
BC115881_1(BC115881|pid:none) Mus musculus dehydrogenase/reducta... 42 0.034
AL137300_1(AL137300|pid:none) Homo sapiens mRNA; cDNA DKFZp434O0... 42 0.034
BT083806_1(BT083806|pid:none) Zea mays full-length cDNA clone ZM... 42 0.034
S63824_1(S63824|pid:none) NADPH-protochlorophyllide-oxidoreducta... 42 0.034
AJ293620_1(AJ293620|pid:none) Homo sapiens mRNA for putative oxi... 42 0.034
CP000552_701(CP000552|pid:none) Prochlorococcus marinus str. MIT... 41 0.045
BT037658_1(BT037658|pid:none) Zea mays full-length cDNA clone ZM... 41 0.045
AL031326_13(AL031326|pid:none) Arabidopsis thaliana DNA chromoso... 41 0.045
CP000576_662(CP000576|pid:none) Prochlorococcus marinus str. MIT... 41 0.045
(Q42850) RecName: Full=Protochlorophyllide reductase B, chloropl... 41 0.045
BT086493_1(BT086493|pid:none) Zea mays full-length cDNA clone ZM... 41 0.045
BA000040_3799(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 41 0.045
AJ567760_1(AJ567760|pid:none) Zea mays partial mRNA for NADPH-pr... 41 0.045
AP009493_3099(AP009493|pid:none) Streptomyces griseus subsp. gri... 41 0.058
BT069517_1(BT069517|pid:none) Zea mays full-length cDNA clone ZM... 41 0.058
AJ851761_1(AJ851761|pid:none) Gallus gallus mRNA for hypothetica... 40 0.076
AB025622_2(AB025622|pid:none) Arabidopsis thaliana genomic DNA, ... 40 0.076
EF676905_1(EF676905|pid:none) Picea sitchensis clone WS02757_K05... 40 0.076
AB074571_1(AB074571|pid:none) Nicotiana tabacum POR2 mRNA for NA... 40 0.076
CP000431_4842(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 40 0.076
AY596297_1898(AY596297|pid:none) Haloarcula marismortui ATCC 430... 40 0.076
CP000388_2952(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 40 0.076
(Q01289) RecName: Full=Protochlorophyllide reductase, chloroplas... 40 0.076
(Q5F389) RecName: Full=WW domain-containing oxidoreductase; ... 40 0.076
S20941(S20941;S71412)protochlorophyllide reductase (EC 1.3.1.33)... 40 0.076
CP000384_4235(CP000384|pid:none) Mycobacterium sp. MCS, complete... 40 0.076
EF676120_1(EF676120|pid:none) Picea sitchensis clone WS02710_O11... 40 0.076
CP000863_574(CP000863|pid:none) Acinetobacter baumannii ACICU, c... 40 0.100
T33973(T33973)hypothetical protein DC2.5 - Caenorhabditis elegans 40 0.100
AK242790_1(AK242790|pid:none) Oryza sativa Japonica Group cDNA, ... 40 0.100
BA000030_5092(BA000030|pid:none) Streptomyces avermitilis MA-468... 40 0.100
AP009552_1364(AP009552|pid:none) Microcystis aeruginosa NIES-843... 40 0.100
AF093628_1(AF093628|pid:none) Oryza sativa protochlorophyllide r... 40 0.100
BT001112_1(BT001112|pid:none) Arabidopsis thaliana clone C103380... 40 0.100
(Q42536) RecName: Full=Protochlorophyllide reductase A, chloropl... 40 0.100
CP000386_319(CP000386|pid:none) Rubrobacter xylanophilus DSM 994... 40 0.100
CP000479_1749(CP000479|pid:none) Mycobacterium avium 104, comple... 40 0.100
AB025622_1(AB025622|pid:none) Arabidopsis thaliana genomic DNA, ... 40 0.100
AP006618_4363(AP006618|pid:none) Nocardia farcinica IFM 10152 DN... 40 0.100
CP000435_2779(CP000435|pid:none) Synechococcus sp. CC9311, compl... 40 0.100
AE017126_1534(AE017126|pid:none) Prochlorococcus marinus subsp. ... 40 0.13
AE000516_316(AE000516|pid:none) Mycobacterium tuberculosis CDC15... 40 0.13
AF279251_1(AF279251|pid:none) Vigna radiata NADPH-protochlorophy... 40 0.13
AK226796_1(AK226796|pid:none) Arabidopsis thaliana mRNA for fore... 40 0.13
S77418_1(S77418|pid:none) Arabidopsis thaliana forever young (FE... 40 0.13
AP011115_4972(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 40 0.13
CP001108_1744(CP001108|pid:none) Prosthecochloris aestuarii DSM ... 39 0.17
CR954205_54(CR954205|pid:none) Ostreococcus tauri strain OTTH059... 39 0.17
FN392322_410(FN392322|pid:none) Pichia pastoris GS115 chromosome... 39 0.17
AE016958_3933(AE016958|pid:none) Mycobacterium avium subsp. para... 39 0.17
CP000806_319(CP000806|pid:none) Cyanothece sp. ATCC 51142 circul... 39 0.17
CP001337_826(CP001337|pid:none) Chloroflexus aggregans DSM 9485,... 39 0.17
CP000454_1060(CP000454|pid:none) Arthrobacter sp. FB24, complete... 39 0.17
CP000825_714(CP000825|pid:none) Prochlorococcus marinus str. MIT... 39 0.17
BX548175_1049(BX548175|pid:none) Prochlorococcus marinus MIT9313... 39 0.22
U28943_11(U28943|pid:none) Caenorhabditis elegans cosmid E04F6, ... 39 0.22
CP000157_455(CP000157|pid:none) Erythrobacter litoralis HTCC2594... 39 0.22
CP001291_4848(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 39 0.22
AM889285_555(AM889285|pid:none) Gluconacetobacter diazotrophicus... 39 0.22
(Q8W3D9) RecName: Full=Protochlorophyllide reductase B, chloropl... 39 0.22
CP000125_2126(CP000125|pid:none) Burkholderia pseudomallei 1710b... 39 0.29
AM039952_256(AM039952|pid:none) Xanthomonas campestris pv. vesic... 39 0.29
CP001327_233(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 39 0.29
CP000521_552(CP000521|pid:none) Acinetobacter baumannii ATCC 179... 39 0.29
AM236085_136(AM236085|pid:none) Rhizobium leguminosarum bv. vici... 39 0.29
AE014186_94(AE014186|pid:none) Plasmodium falciparum 3D7 chromos... 39 0.29
AY808773_1(AY808773|pid:none) Schistosoma japonicum SJCHGC08538 ... 39 0.29
BX571966_586(BX571966|pid:none) Burkholderia pseudomallei strain... 39 0.29
CP000473_1952(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 38 0.38
AE016958_3287(AE016958|pid:none) Mycobacterium avium subsp. para... 38 0.38
AM270263_40(AM270263|pid:none) Aspergillus niger contig An12c006... 38 0.38
CU861906_626(CU861906|pid:none) Ralstonia solanacearum strain Mo... 38 0.38
CP000378_1243(CP000378|pid:none) Burkholderia cenocepacia AU 105... 38 0.38
BT075984_1(BT075984|pid:none) Caligus rogercresseyi clone crog-e... 38 0.38
CT971583_2446(CT971583|pid:none) Synechococcus WH7803 complete g... 38 0.38
CP000479_3970(CP000479|pid:none) Mycobacterium avium 104, comple... 38 0.38
AK341306_1(AK341306|pid:none) Acyrthosiphon pisum ACYPI002738 mR... 38 0.38
(O66148) RecName: Full=Light-dependent protochlorophyllide reduc... 38 0.49
AB170555_1(AB170555|pid:none) Macaca fascicularis brain cDNA clo... 38 0.49
BC026274_1(BC026274|pid:none) Homo sapiens retinol dehydrogenase... 38 0.49
AK289427_1(AK289427|pid:none) Homo sapiens cDNA FLJ76200 complet... 38 0.49
BA000030_7445(BA000030|pid:none) Streptomyces avermitilis MA-468... 38 0.49
AK057195_1(AK057195|pid:none) Homo sapiens cDNA FLJ32633 fis, cl... 38 0.49
DQ325543_28(DQ325543|pid:none) Uncultured marine type-A Synechoc... 38 0.49
BC051291_1(BC051291|pid:none) Homo sapiens retinol dehydrogenase... 38 0.49
BA000012_1283(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 38 0.49
(Q59987) RecName: Full=Light-dependent protochlorophyllide reduc... 38 0.49
L37783_1(L37783|pid:none) Synechocystis sp. (clone p6803-1) prot... 38 0.49
CR382138_159(CR382138|pid:none) Debaryomyces hansenii strain CBS... 38 0.49
DQ284920_37(DQ284920|pid:none) Uncultured marine type-A Synechoc... 38 0.49
CU914168_657(CU914168|pid:none) Ralstonia solanacearum strain IP... 38 0.49
(Q8TC12) RecName: Full=Retinol dehydrogenase 11; EC=1.1... 38 0.49
BT080318_1(BT080318|pid:none) Caligus clemensi clone ccle-evs-50... 38 0.49
AX041971_1(AX041971|pid:none) Sequence 1 from Patent WO0065067. 37 0.65
AE016958_980(AE016958|pid:none) Mycobacterium avium subsp. parat... 37 0.65
CP000150_551(CP000150|pid:none) Burkholderia sp. 383 chromosome ... 37 0.65
CP000580_595(CP000580|pid:none) Mycobacterium sp. JLS, complete ... 37 0.65
BX649443_1(BX649443|pid:none) Human DNA sequence from clone CTD-... 37 0.84
AP008216_1216(AP008216|pid:none) Oryza sativa (japonica cultivar... 37 0.84
AB030504_1(AB030504|pid:none) Mus musculus mRNA for UBE-1b, comp... 37 0.84
CP000951_205(CP000951|pid:none) Synechococcus sp. PCC 7002, comp... 37 0.84
(Q9QYF1) RecName: Full=Retinol dehydrogenase 11; EC=1.1... 37 0.84
BT051873_1(BT051873|pid:none) Medicago truncatula clone MTYF5_F6... 37 0.84
BX649443_2(BX649443|pid:none) Human DNA sequence from clone CTD-... 37 0.84
CP001114_220(CP001114|pid:none) Deinococcus deserti VCD115, comp... 37 0.84
AB030503_1(AB030503|pid:none) Mus musculus mRNA for UBE-1a, comp... 37 0.84
AB030505_3(AB030505|pid:none) Mus musculus mRNA for UBE-1c1, UBE... 37 0.84
CP000239_2265(CP000239|pid:none) Synechococcus sp. JA-3-3Ab, com... 37 0.84
AC020666_25(AC020666|pid:none) Oryza sativa chromosome 10 BAC OS... 37 0.84
AM420293_3802(AM420293|pid:none) Saccharopolyspora erythraea NRR... 37 1.1
BA000040_1253(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 37 1.1
CP000111_662(CP000111|pid:none) Prochlorococcus marinus str. MIT... 37 1.1
CP000111_568(CP000111|pid:none) Prochlorococcus marinus str. MIT... 37 1.1
CP000100_2501(CP000100|pid:none) Synechococcus elongatus PCC 794... 37 1.1
CR936257_1774(CR936257|pid:none) Natronomonas pharaonis DSM 2160... 36 1.4
AF216836_1(AF216836|pid:none) Solanum bulbocastanum forever youn... 36 1.4
CP001087_2216(CP001087|pid:none) Desulfobacterium autotrophicum ... 36 1.4
CP000136_50(CP000136|pid:none) Rhizobium etli CFN 42 plasmid p42... 36 1.4
BX569693_305(BX569693|pid:none) Synechococcus sp. WH8102 complet... 36 1.4
S63825_1(S63825|pid:none) NADPH-protochlorophyllide-oxidoreducta... 36 1.9
AE016958_3577(AE016958|pid:none) Mycobacterium avium subsp. para... 36 1.9
AL117207_9(AL117207|pid:none) Caenorhabditis elegans YAC Y60A3A,... 36 1.9
DQ284919_32(DQ284919|pid:none) Uncultured marine type-A Synechoc... 36 1.9
AB050124_1(AB050124|pid:none) Amaranthus tricolor POR2 mRNA for ... 36 1.9
DQ325538_51(DQ325538|pid:none) Uncultured marine type-A Synechoc... 36 1.9
AK343088_1(AK343088|pid:none) Acyrthosiphon pisum ACYPI004813 mR... 36 1.9
CP000411_221(CP000411|pid:none) Oenococcus oeni PSU-1, complete ... 36 1.9
DQ325540_31(DQ325540|pid:none) Uncultured marine type-A Synechoc... 36 1.9
AK343087_1(AK343087|pid:none) Acyrthosiphon pisum ACYPI004813 mR... 36 1.9
CP000480_2904(CP000480|pid:none) Mycobacterium smegmatis str. MC... 36 1.9
BX572594_266(BX572594|pid:none) Rhodopseudomonas palustris CGA00... 36 1.9
AF027356_1(AF027356|pid:none) Pinus strobus NADPH:protochlorophy... 36 1.9
DQ325539_35(DQ325539|pid:none) Uncultured marine type-A Synechoc... 36 1.9
CP000580_5503(CP000580|pid:none) Mycobacterium sp. JLS, complete... 35 2.5
CP000393_78(CP000393|pid:none) Trichodesmium erythraeum IMS101, ... 35 2.5
CP000554_787(CP000554|pid:none) Prochlorococcus marinus str. MIT... 35 2.5
CR380957_390(CR380957|pid:none) Candida glabrata strain CBS138 c... 35 2.5
S14469(S14469) asparagine-rich protein (clone 17C1) - Plasmodium... 35 2.5
CP001096_586(CP001096|pid:none) Rhodopseudomonas palustris TIE-1... 35 2.5
BX548175_1583(BX548175|pid:none) Prochlorococcus marinus MIT9313... 35 2.5
BA000045_2486(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ... 35 2.5
AE007872_289(AE007872|pid:none) Agrobacterium tumefaciens str. C... 35 2.5
CP000435_1940(CP000435|pid:none) Synechococcus sp. CC9311, compl... 35 2.5
AM920431_1357(AM920431|pid:none) Penicillium chrysogenum Wiscons... 35 2.5
CP000511_2954(CP000511|pid:none) Mycobacterium vanbaalenii PYR-1... 35 2.5
CP000878_743(CP000878|pid:none) Prochlorococcus marinus str. MIT... 35 3.2
AL162873_28(AL162873|pid:none) Arabidopsis thaliana DNA chromoso... 35 3.2
CP001189_806(CP001189|pid:none) Gluconacetobacter diazotrophicus... 35 3.2
CP000103_1286(CP000103|pid:none) Nitrosospira multiformis ATCC 2... 35 3.2
AM920428_857(AM920428|pid:none) Penicillium chrysogenum Wisconsi... 35 3.2
AP009153_2976(AP009153|pid:none) Gemmatimonas aurantiaca T-27 DN... 35 4.2
CP000750_2767(CP000750|pid:none) Kineococcus radiotolerans SRS30... 35 4.2
AP009153_2064(AP009153|pid:none) Gemmatimonas aurantiaca T-27 DN... 35 4.2
CP001096_1843(CP001096|pid:none) Rhodopseudomonas palustris TIE-... 35 4.2
AM458444_3(AM458444|pid:none) Vitis vinifera contig VV78X111317.... 35 4.2
CP000878_107(CP000878|pid:none) Prochlorococcus marinus str. MIT... 35 4.2
CP000828_3457(CP000828|pid:none) Acaryochloris marina MBIC11017,... 35 4.2
CP000480_5246(CP000480|pid:none) Mycobacterium smegmatis str. MC... 35 4.2
CP000511_749(CP000511|pid:none) Mycobacterium vanbaalenii PYR-1,... 35 4.2
CP000554_1314(CP000554|pid:none) Prochlorococcus marinus str. MI... 34 5.5
CT971583_669(CT971583|pid:none) Synechococcus WH7803 complete ge... 34 5.5
CP000240_990(CP000240|pid:none) Synechococcus sp. JA-2-3B'a(2-13... 34 5.5
S59074(S59074)protochlorophyllide reductase (EC 1.3.1.33) - Phor... 34 5.5
CP000554_1782(CP000554|pid:none) Prochlorococcus marinus str. MI... 34 5.5
CP000463_2355(CP000463|pid:none) Rhodopseudomonas palustris BisA... 34 5.5
AE017333_2516(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 34 5.5
CP000851_2164(CP000851|pid:none) Shewanella pealeana ATCC 700345... 34 5.5
(Q55DF5) RecName: Full=JmjC domain-containing protein D; AltName... 34 5.5
CP000931_2724(CP000931|pid:none) Shewanella halifaxensis HAW-EB4... 34 5.5
BT071093_1(BT071093|pid:none) Picea sitchensis clone WS02770_H20... 34 5.5
CP000152_1461(CP000152|pid:none) Burkholderia sp. 383 chromosome... 34 5.5
CP000002_2520(CP000002|pid:none) Bacillus licheniformis ATCC 145... 34 5.5
CP001001_4826(CP001001|pid:none) Methylobacterium radiotolerans ... 34 5.5
CP000656_3262(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c... 34 7.1
CP000438_1235(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA... 34 7.1
CP000009_1006(CP000009|pid:none) Gluconobacter oxydans 621H, com... 34 7.1
AE017126_789(AE017126|pid:none) Prochlorococcus marinus subsp. m... 34 7.1
CP000854_746(CP000854|pid:none) Mycobacterium marinum M, complet... 34 7.1
AE014185_311(AE014185|pid:none) Plasmodium falciparum 3D7 chromo... 34 7.1
CP000908_3575(CP000908|pid:none) Methylobacterium extorquens PA1... 34 7.1
CP001349_6466(CP001349|pid:none) Methylobacterium nodulans ORS 2... 34 7.1
EU254643_1(EU254643|pid:none) Haemoproteus syrnii haplotype P92 ... 34 7.1
FN357331_5(FN357331|pid:none) Schistosoma mansoni genome sequenc... 34 7.1
A93747_1(A93747|pid:none) Sequence 7 from Patent EP0796914. 33 9.3
CP000835_7(CP000835|pid:none) Dinoroseobacter shibae DFL 12 plas... 33 9.3
CP000879_704(CP000879|pid:none) Petrotoga mobilis SJ95, complete... 33 9.3
DQ393591_1(DQ393591|pid:none) Candida albicans Tac1-5p (TAC1-5) ... 33 9.3
DQ393588_1(DQ393588|pid:none) Candida albicans Tac1-2p (TAC1-2) ... 33 9.3
CP000677_144(CP000677|pid:none) Novosphingobium aromaticivorans ... 33 9.3
DQ837378_1(DQ837378|pid:none) Candida albicans transcription fac... 33 9.3
CP000931_2127(CP000931|pid:none) Shewanella halifaxensis HAW-EB4... 33 9.3
EU054338_1(EU054338|pid:none) Candida albicans Tac1-15p (TAC1-15... 33 9.3
AP006618_627(AP006618|pid:none) Nocardia farcinica IFM 10152 DNA... 33 9.3
EU054345_1(EU054345|pid:none) Candida albicans Tac1-22p (TAC1-22... 33 9.3
AP006618_1106(AP006618|pid:none) Nocardia farcinica IFM 10152 DN... 33 9.3
>BC082500_1(BC082500|pid:none) Xenopus tropicalis retinol
dehydrogenase 13 (all-trans/9-cis), mRNA (cDNA clone
MGC:89115 IMAGE:7006726), complete cds.
Length = 329
Score = 72.8 bits (177), Expect = 1e-11
Identities = 51/148 (34%), Positives = 79/148 (53%), Gaps = 5/148 (3%)
Frame = +3
Query: 261 LSSEFHQREPLNFDKLLLTDNDSSNFDTLREYSKSKLCNLLFSMELHNRLDNLKNNNIRV 440
+SS H ++FD L + + ++T Y +SKL N+LF+ EL RL K +
Sbjct: 172 VSSLAHIAGDIDFDDL---NWEKKKYNTKAAYCQSKLANVLFTNELAKRLQGTK---LTA 225
Query: 441 NSLHPGYLRTPINRDL----SWFTRHIIAPIFFFGYGSKTEDTINGI-VNLIENNSNHSG 605
NSLHPG T + R S F+ I+AP+F+F S + + + + EN SG
Sbjct: 226 NSLHPGVADTELGRHTGMHQSAFSSTILAPLFWFLVKSPKQAAQPSVYLAVAENLQGVSG 285
Query: 606 KYFSISKEISPSPFASNLENSKLLWEKT 689
KYF+ KE P+P A + E+++ LWE++
Sbjct: 286 KYFNALKEKEPAPQALDEESARKLWEES 313
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 774,205,801
Number of extensions: 11131223
Number of successful extensions: 36762
Number of sequences better than 10.0: 365
Number of HSP's gapped: 36555
Number of HSP's successfully gapped: 367
Length of query: 287
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 160
Effective length of database: 640,137,871
Effective search space: 102422059360
Effective search space used: 102422059360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
3 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |