| Contig-U09340-1 |
| Contig ID |
Contig-U09340-1 |
| Contig update |
2002. 9.13 |
| Contig sequence |
 |
| Gap |
gap included |
| Contig length |
591 |
| Chromosome number (1..6, M) |
6 |
| Chromosome length |
3595308 |
| Start point |
3136401 |
| End point |
3135809 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
1 |
| Number of EST |
2 |
| Link to clone list |
U09340 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11.15 |
| Homology vs DNA |
Query= Contig-U09340-1 (Contig-U09340-1Q) /CSM_Contig/Contig-U09340-1Q.Seq.d
(601 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(C92255) Dictyostelium discoideum slug cDNA, clone SSD301. 212 e-101 2
(AU072055) Dictyostelium discoideum slug cDNA, clone SSD301. 176 6e-40 1
(AU037961) Dictyostelium discoideum slug cDNA, clone SSH101. 36 7e-04 3
(ET879022) CHO_OF349xo13f1.ab1 CHO_OF Nicotiana tabacum geno... 42 0.002 2
(FH440374) CHO_OF4609xj04f1.ab1 CHO_OF4 Nicotiana tabacum ge... 42 0.003 2
(BX005458) Zebrafish DNA sequence from clone CH211-173L10 in... 52 0.023 1
(BX323823) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 52 0.023 1
(AC159405) Trypanosoma brucei chromosome 8 clone RPCI93-11J1... 46 0.037 2
(CR931998) Zebrafish DNA sequence from clone DKEY-261G23 in ... 42 0.066 5
(DJ025873) Genome-wide DNA marker of Saccharomyces cerevisiae. 34 0.20 2
(U18813) Saccharomyces cerevisiae chromosome V lambda clones... 34 0.23 2
(X65554) S.cerevisiae ICL1 gene for isocitrate lyase. 34 0.25 2
(BV362953) S231P6311FF6.T0 BedlingtonTerrier Canis familiari... 48 0.36 1
(AC147677) Canis Familiaris, clone XX-25A1, complete sequence. 48 0.36 1
(AF298202) Dictyostelium discoideum putative transposon DDT-... 48 0.36 1
(AC178537) Strongylocentrotus purpuratus clone R3-3031D5, WO... 42 0.43 3
(AC201616) Strongylocentrotus purpuratus clone R3-64P05, WOR... 40 0.44 3
(FH170688) CHO_OF3385xl13f1.ab1 CHO_OF3 Nicotiana tabacum ge... 36 0.67 2
(FI075741) CHO_OF7352xh10f1.ab1 CHO_OF7 Nicotiana tabacum ge... 36 0.68 2
(ET966447) CHO_OF630xo14f1.ab1 CHO_OF Nicotiana tabacum geno... 36 0.68 2
(ET966514) CHO_OF630xo14r1.ab1 CHO_OF Nicotiana tabacum geno... 36 0.68 2
(DQ198149) Plasmodium falciparum merozoite-associated trypto... 34 0.72 4
(FH170761) CHO_OF3385xl13r1.ab1 CHO_OF3 Nicotiana tabacum ge... 36 0.75 2
(FI075816) CHO_OF7352xh10r1.ab1 CHO_OF7 Nicotiana tabacum ge... 36 0.76 2
(AY324196) Danio rerio membrane-type matrix metalloproteinas... 38 0.79 2
(FH379051) CHO_OF4728xg08r1.ab1 CHO_OF4 Nicotiana tabacum ge... 36 0.80 2
(BZ399096) EINAS54TF EI_10_12_KB Entamoeba invadens genomic ... 36 0.80 3
(AC117082) Dictyostelium discoideum chromosome 2 map complem... 38 0.87 4
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 34 1.2 7
(DD209263) test. 38 1.3 2
(AX826100) Sequence 352 from Patent WO03072821. 38 1.3 2
(AX822460) Sequence 352 from Patent EP1340818. 38 1.3 2
(AX767550) Sequence 198 from Patent WO03044226. 38 1.3 2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 36 1.3 7
(BX546485) Zebrafish DNA sequence from clone RP71-39A17 in l... 46 1.4 1
(BX321877) Zebrafish DNA sequence from clone DKEYP-27B10 in ... 46 1.4 1
(CU694536) H.parasitica DNA sequence from clone HpEmoy2-16L17. 46 1.4 1
(AC165277) Medicago truncatula chromosome 7 BAC clone mth2-6... 46 1.4 1
(AL132862) Caenorhabditis elegans YAC Y73F8A. 46 1.4 1
(AJ327932) Homo sapiens genomic sequence surrounding NotI si... 46 1.4 1
(AC138734) Papio anubis clone RP41-45M14, WORKING DRAFT SEQU... 46 1.4 1
(AC131200) Rattus norvegicus clone CH230-173D5, WORKING DRAF... 46 1.4 1
(AC114174) Rattus norvegicus clone CH230-183O17, *** SEQUENC... 46 1.4 1
(AC096891) Rattus norvegicus clone CH230-20E21, WORKING DRAF... 46 1.4 1
(CU896627) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 46 1.4 1
(CR936344) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 46 1.4 1
(DU767112) ANIW8838.b2 HF4000_12-21-03 uncultured marine mic... 46 1.4 1
(AL424143) T7 end of clone AZ0AA012F02 of library AZ0AA from... 46 1.4 1
(AL424142) T7 end of clone AZ0AA012F02 of library AZ0AA from... 46 1.4 1
(DB884255) Populus nigra mRNA, clone: PnFL2-053_D07, 5'end. 46 1.4 1
(CV485235) AGENCOURT_33030390 NIH_ZGC_15 Danio rerio cDNA cl... 46 1.4 1
(CK756689) atr02-4ms3-c08 Atr02 Amborella trichopoda cDNA cl... 46 1.4 1
(CP000746) Actinobacillus succinogenes 130Z, complete genome. 46 1.4 1
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2... 32 1.5 8
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s... 38 1.7 7
(AC131487) Lytechinus variegatus clone Lv18J3, *** SEQUENCIN... 42 2.0 3
(AC178740) Strongylocentrotus purpuratus clone R3-3002K9, WO... 32 2.1 5
(DC226053) Plasmodium berghei strain ANKA cDNA clone:SG00457... 40 2.2 2
(AZ526379) 254PbG11 Pb MBN #21 Plasmodium berghei genomic 3'... 40 2.2 2
(ET882720) CHO_OF421xg08f1.ab1 CHO_OF Nicotiana tabacum geno... 36 2.2 3
(DC224767) Plasmodium berghei strain ANKA cDNA clone:SG00080... 40 2.2 2
(DC226048) Plasmodium berghei strain ANKA cDNA clone:SG00455... 40 2.4 2
(AC137074) Genomic sequence for Oryza sativa, Nipponbare str... 38 2.5 4
(DC202777) Plasmodium berghei strain ANKA cDNA clone:MG00183... 40 2.5 2
(DC225931) Plasmodium berghei strain ANKA cDNA clone:SG00417... 40 2.5 2
(FH837275) OSB_1257001xo03f1.ab1 OSB_1257 Nicotiana tabacum ... 36 2.6 3
(DC224500) Plasmodium berghei strain ANKA cDNA clone:SG00000... 40 2.6 2
(DC227817) Plasmodium berghei strain ANKA cDNA clone:SG01022... 40 2.7 2
(DU372090) 1098268362586 CHORI-243 Ovis aries genomic clone ... 36 2.9 2
(FH836489) OSB_1257005xl08f1.ab1 OSB_1257 Nicotiana tabacum ... 36 2.9 3
(DX408238) SOYF441TH LargeInsertSoybeanGenLibBuild4 Glycine ... 34 3.0 2
(FH837491) OSB_1257001xm04r1.ab1 OSB_1257 Nicotiana tabacum ... 36 3.1 3
(FH838027) OSB_1257004xg12r1.ab1 OSB_1257 Nicotiana tabacum ... 36 3.1 3
(FH837889) OSB_1257004xc23r1.ab1 OSB_1257 Nicotiana tabacum ... 36 3.2 3
(FH836190) OSB_1257005xa18r1.ab1 OSB_1257 Nicotiana tabacum ... 36 3.3 3
(FH838519) OSB_1257003xe04f1.ab1 OSB_1257 Nicotiana tabacum ... 36 3.4 3
(DU659892) OG_ABa0065J02.f OG_ABa Oryza granulata genomic cl... 32 3.8 2
(AM455366) Vitis vinifera contig VV78X059333.2, whole genome... 40 4.1 2
(AC126779) Medicago truncatula clone mth2-34m14, complete se... 34 4.6 5
(AC092396) Drosophila melanogaster, chromosome 2L, region 36... 38 4.8 4
(AC175912) Strongylocentrotus purpuratus clone R3-12P9, WORK... 34 5.4 4
(EJ145141) 1092343699888 Global-Ocean-Sampling_GS-27-01-01-1... 38 5.5 2
(CT025897) Zebrafish DNA sequence from clone DKEY-70E17 in l... 44 5.7 1
(CR847836) Zebrafish DNA sequence from clone DKEY-285J18 in ... 44 5.7 1
(CR377229) Zebrafish DNA sequence from clone CH211-273M23 in... 44 5.7 1
(BX248577) Zebrafish DNA sequence from clone CH211-162H21 in... 44 5.7 1
(EZ000157) TSA: Schistosoma japonicum SJCHGC05601 unknown mRNA. 44 5.7 1
(AB282594) Eukaryotic synthetic construct plasmid pAP3neo-2-... 44 5.7 1
(AB177891) Eukaryotic synthetic construct humanized PfDGAT1 ... 44 5.7 1
(AL395577) T3 end of clone AR0AA024G08 of library AR0AA from... 44 5.7 1
(AC153382) Mus musculus 10 BAC RP23-9F3 (Roswell Park Cancer... 44 5.7 1
(AC122059) Mus musculus BAC clone RP24-468J3 from 1, complet... 44 5.7 1
(AC113311) Mus musculus chromosome 1, clone RP23-440J24, com... 44 5.7 1
(AM447631) Vitis vinifera contig VV78X115648.4, whole genome... 44 5.7 1
(AC212306) Solanum lycopersicum cv. Heinz 1706, chromosome 0... 44 5.7 1
(DD147007) A method for assaying an inhibitory activity to p... 44 5.7 1
(AC151393) Atelerix albiventris clone LB4-130D24, complete s... 44 5.7 1
(AC127467) Atelerix albiventris clone LB4-4E15, complete seq... 44 5.7 1
(AC091483) Trypanosoma brucei chromosome 3 clone RPCI93-48K5... 44 5.7 1
(AC093815) Homo sapiens BAC clone RP11-362M19 from 4, comple... 44 5.7 1
>(C92255) Dictyostelium discoideum slug cDNA, clone SSD301.
Length = 264
Score = 212 bits (107), Expect(2) = e-101
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 340 aagacaaatccaatcaaaatcaaaataatttcaaagatgcctccaatttgtaatagtatt 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 aagacaaatccaatcaaaatcaaaataatttcaaagatgcctccaatttgtaatagtatt 61
Query: 400 gaaaatgaaaataattcatttgaattaacaaccacaatttcattttt 446
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 gaaaatgaaaataattcatttgaattaacaaccacaatttcattttt 108
Score = 192 bits (97), Expect(2) = e-101
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 505 atttcacaaattttgggagaatataatagtttcttaataaataatacaattgaagattta 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 atttcacaaattttgggagaatataatagtttcttaataaataatacaattgaagattta 226
Query: 565 gaaagtgcaattgctcaaaatatacataattagtcaa 601
|||||||||||||||||||||||||||||||||||||
Sbjct: 227 gaaagtgcaattgctcaaaatatacataattagtcaa 263
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 441,721,371
Number of extensions: 31833005
Number of successful extensions: 3098359
Number of sequences better than 10.0: 180
Length of query: 601
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 578
Effective length of database: 93,106,754,628
Effective search space: 53815704174984
Effective search space used: 53815704174984
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 6.25 |
| Homology vs Protein |
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
1 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |