| Contig-U09338-1 |
| Contig ID |
Contig-U09338-1 |
| Contig update |
2002. 9.13 |
| Contig sequence |
 |
| Gap |
gap included |
| Contig length |
1546 |
| Chromosome number (1..6, M) |
6 |
| Chromosome length |
3595308 |
| Start point |
1143210 |
| End point |
1144695 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
12 |
| Number of EST |
18 |
| Link to clone list |
U09338 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11.15 |
| Homology vs DNA |
Query= Contig-U09338-1 (Contig-U09338-1Q) /CSM_Contig/Contig-U09338-1Q.Seq.d
(1556 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ341815) Dictyostelium discoideum cDNA clone:dda8e11, 3' e... 1207 0.0 3
(BJ343028) Dictyostelium discoideum cDNA clone:dda15l24, 3' ... 1094 0.0 2
(BJ433732) Dictyostelium discoideum cDNA clone:ddv22d20, 3' ... 1029 0.0 1
(BJ428884) Dictyostelium discoideum cDNA clone:ddv1g16, 3' e... 993 0.0 2
(BJ432588) Dictyostelium discoideum cDNA clone:ddv19k02, 3' ... 1001 0.0 2
(AU261716) Dictyostelium discoideum vegetative cDNA clone:VS... 985 0.0 1
(BJ435206) Dictyostelium discoideum cDNA clone:ddv26m10, 3' ... 914 0.0 2
(BJ430053) Dictyostelium discoideum cDNA clone:ddv5l23, 3' e... 876 0.0 1
(BJ427952) Dictyostelium discoideum cDNA clone:ddv10n06, 3' ... 815 0.0 1
(BJ411812) Dictyostelium discoideum cDNA clone:ddv5l23, 5' e... 763 0.0 1
(BJ429249) Dictyostelium discoideum cDNA clone:ddv2h19, 3' e... 761 0.0 1
(BJ431822) Dictyostelium discoideum cDNA clone:ddv15o16, 3' ... 410 e-110 1
(C92209) Dictyostelium discoideum slug cDNA, clone SSD234. 375 3e-99 1
(AU072037) Dictyostelium discoideum slug cDNA, clone SSD234. 163 3e-97 4
(BJ416435) Dictyostelium discoideum cDNA clone:ddv26m10, 5' ... 163 2e-35 1
(BJ414429) Dictyostelium discoideum cDNA clone:ddv19k02, 5' ... 163 2e-35 1
(BJ413476) Dictyostelium discoideum cDNA clone:ddv15o16, 5' ... 163 2e-35 1
(BJ409834) Dictyostelium discoideum cDNA clone:ddv10n06, 5' ... 163 2e-35 1
(FE261045) CAZO1756.rev CAZO Naegleria gruberi Flagellate St... 56 4e-08 3
(AL404286) T3 end of clone AT0AA014D04 of library AT0AA from... 54 7e-07 2
(AR548681) Sequence 3812 from patent US 6747137. 54 5e-05 2
(AX489055) Sequence 6355 from Patent WO02053728. 54 6e-05 2
(D89610) Candida albicans DNA for squalene synthase, complet... 54 8e-05 2
(FE254026) CAPH4844.fwd CAPH Naegleria gruberi amoeba stage ... 56 4e-04 2
(FE254775) CAPH5227.fwd CAPH Naegleria gruberi amoeba stage ... 56 4e-04 2
(FE254774) CAPH5227.rev CAPH Naegleria gruberi amoeba stage ... 56 4e-04 2
(AK237390) Sus scrofa mRNA, clone:SPL010035A02, expressed in... 58 0.001 1
(AK234189) Sus scrofa mRNA, clone:OVR010025C12, expressed in... 58 0.001 1
(DT322631) SusFleck_BFN_0001_0004_5_pCNS_F07 SusFleck Backfa... 58 0.001 1
(DB789000) Sus scrofa mRNA, clone:ADR010084G10, 5' end, expr... 58 0.001 1
(DB788546) Sus scrofa mRNA, clone:ADR010079F02, 5' end, expr... 58 0.001 1
(CV867418) PDUts1042G06 Porcine testis cDNA library I Sus sc... 58 0.001 1
(AJ964819) Sus scrofa EST, clone C0007752d24, 5' direction. 58 0.001 1
(AJ661749) Sus scrofa EST, clone C0000937_H08. 58 0.001 1
(AJ656384) Sus scrofa EST, clone C0005192_C18. 58 0.001 1
(CF361809) 828169 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence. 58 0.001 1
(BP462880) Sus scrofa mRNA, clone:UTR010074A09, 5' end, expr... 58 0.001 1
(BP138624) Sus scrofa mRNA, clone:LVRM10030C06, 5' end, expr... 58 0.001 1
(BP138169) Sus scrofa mRNA, clone:LVRM10058B06, 5' end, expr... 58 0.001 1
(BI345018) 373710 MARC 2PIG Sus scrofa cDNA 5', mRNA sequence. 58 0.001 1
(EW346062) rplun0119_l24.y1 lun Sus scrofa cDNA 5', mRNA seq... 58 0.001 1
(CR860391) Pongo abelii mRNA; cDNA DKFZp459C1712 (from clone... 42 0.001 2
(CB311156) AGENCOURT_11837144 NICHD_Rh_Ov1 Macaca mulatta cD... 42 0.002 2
(DN621441) UCRCS11_06L11_r Parent Washington Navel Orange Sc... 40 0.002 4
(EY716433) CS00-C3-702-067-D09-CT.F Sweet orange fruit, deve... 40 0.003 4
(EY700606) CS00-C3-700-096-E08-CT.F Sweet orange fruit, deve... 40 0.003 4
(CX223493) MNS41803 Mouse Neurosphere Normalized cDNA librar... 42 0.004 2
(CB274257) mai90g08.y1 McCarrey Eddy round spermatid Mus mus... 42 0.005 2
(AI195100) ui60f07.x1 Sugano mouse liver mlia Mus musculus c... 42 0.005 2
(AI529132) ui60f07.y1 Sugano mouse liver mlia Mus musculus c... 42 0.006 2
(CA294069) SCSGLV1009E02.g LV1 Saccharum officinarum cDNA cl... 52 0.006 2
(BI558155) 603240074F1 NCI_CGAP_Mam4 Mus musculus cDNA clone... 42 0.006 2
(FC119562) 1106878575681 BABEVPN-C-01-1-7KB Papio anubis cDN... 42 0.006 2
(CB553348) MMSP0044_F11 MMSP Macaca mulatta cDNA, mRNA seque... 42 0.007 2
(CA284560) SCSBSD1029F07.g SD1 Saccharum officinarum cDNA cl... 52 0.007 2
(BU936859) AGENCOURT_10524124 NIH_MGC_169 Mus musculus cDNA ... 42 0.007 2
(CA265954) SCJLRT3078E09.g RT3 Saccharum officinarum cDNA cl... 52 0.008 2
(CB181440) AGENCOURT_11384698 NIH_MGC_164 Mus musculus cDNA ... 42 0.008 2
(BI411395) 602964764F1 NCI_CGAP_Lu33 Mus musculus cDNA clone... 42 0.009 2
(AK168629) Mus musculus 17 days pregnant adult female amnion... 42 0.013 2
(D29016) Mus musculus mRNA for squalene synthase. 42 0.013 2
(DD013527) METHOD FOR EXAMINING ISCHEMIC CONDITIONS. 42 0.013 2
(AX305366) Sequence 117 from Patent WO0188188. 42 0.013 2
(AK162294) Mus musculus adult male colon cDNA, RIKEN full-le... 42 0.013 2
(AK158633) Mus musculus visual cortex cDNA, RIKEN full-lengt... 42 0.014 2
(AK076062) Mus musculus 11 days embryo whole body cDNA, RIKE... 42 0.014 2
(AK169317) Mus musculus 17 days embryo heart cDNA, RIKEN ful... 42 0.014 2
(AK146766) Mus musculus 17 days embryo kidney cDNA, RIKEN fu... 42 0.016 2
(AK136159) Mus musculus in vitro fertilized eggs cDNA, RIKEN... 42 0.016 2
(CA300066) SCRFLV1034A04.g LV1 Saccharum officinarum cDNA cl... 52 0.020 2
(BC138301) Mus musculus farnesyl diphosphate farnesyl transf... 42 0.021 2
(BC138302) Mus musculus farnesyl diphosphate farnesyl transf... 42 0.021 2
(FC122974) 1106878603097 BABEVPN-C-01-1-7KB Papio anubis cDN... 40 0.022 2
(BC054722) Mus musculus farnesyl diphosphate farnesyl transf... 42 0.023 2
(AF249900) Citrus sinensis squalene synthase mRNA, partial cds. 40 0.025 3
(AV501104) Mus musculus cDNA, Abe mouse ES cell cDNA library... 38 0.058 2
(AL392401) T7 end of clone AR0AA004D01 of library AR0AA from... 34 0.058 4
(CA079941) SCSGAM1094B10.g AM1 Saccharum officinarum cDNA cl... 52 0.065 1
(FE647883) CBYZ7194.b1 CBYZ Panicum virgatum Kanlow 4 day ol... 52 0.065 1
(FE644845) CBYZ549.b1 CBYZ Panicum virgatum Kanlow 4 day old... 52 0.065 1
(U60057) Nicotiana tabacum squalene synthase mRNA, complete ... 34 0.069 3
(AY995183) Datura innoxia squalene synthase mRNA, partial cds. 34 0.075 4
(U46000) Nicotiana benthamiana squalene synthetase mRNA, com... 34 0.078 3
(AR002611) Sequence 1 from patent US 5741898. 34 0.079 3
(AM850116) Nakaseomyces delphensis utp9, nvj1, mdm31, egd2, ... 44 0.081 2
(EX952571) IB1_58_B06_A068.b1 Iris brevicaulis EST Library I... 50 0.26 1
(BI413864) 602991555F1 NCI_CGAP_Lu33 Mus musculus cDNA clone... 42 0.44 2
(BJ872265) Marchantia polymorpha cDNA clone:lwb7i03, 5' end. 36 0.56 3
(DN560698) ME15-G11-T3-96-R1 E7PCR Zea mays cDNA clone E7PCR... 44 0.68 2
(DW587719) E3442 Zea mays egg cell cDNA library Zea mays cDN... 44 0.85 2
(AC211806) Populus trichocarpa clone POP094-K03, complete se... 36 0.94 6
(BE639647) 946036G12.y1 946 - tassel primordium prepared by ... 44 1.0 2
(CR457443) Zebrafish DNA sequence from clone CH211-202J20 in... 48 1.0 1
(AX344930) Sequence 1 from Patent WO0200928. 48 1.0 1
(AL390119) Human DNA sequence from clone RP11-403P14 on chro... 48 1.0 1
(ES598276) TINM-P7_G12 Triatoma infestans salivary gland cDN... 48 1.0 1
(EL565011) Physarum01879 Physarum polycephalum starvation st... 48 1.0 1
(EE799767) 010914ONDC080036HT ONDC Ovis aries cDNA, mRNA seq... 48 1.0 1
(EY736627) CS00-C3-705-018-F07-CT.F Sweet orange fruit, deve... 40 1.1 3
(EY792393) CR05-C3-700-142-A03-CT.F Mandarin fruit, developm... 40 1.1 3
>(BJ341815) Dictyostelium discoideum cDNA clone:dda8e11, 3' end,
single read.
Length = 733
Score = 1207 bits (609), Expect(3) = 0.0
Identities = 609/609 (100%)
Strand = Plus / Minus
Query: 774 ccaaatgggtttattcttacaaaaaactaatatcattcgtgactatttggaagacattaa 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ccaaatgggtttattcttacaaaaaactaatatcattcgtgactatttggaagacattaa 589
Query: 834 cgaaaagagaatcttttggccacgtgatgtttgggctcgttacacattacatttggagaa 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 cgaaaagagaatcttttggccacgtgatgtttgggctcgttacacattacatttggagaa 529
Query: 894 tttcaaagaggccaaataccaaattccagcactccactgtctcaatgatttaatcaccaa 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tttcaaagaggccaaataccaaattccagcactccactgtctcaatgatttaatcaccaa 469
Query: 954 tgctctttcacatgctcttatcgctttggactacatgagtcgtttaaagaatccacaagt 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tgctctttcacatgctcttatcgctttggactacatgagtcgtttaaagaatccacaagt 409
Query: 1014 tatcaatttctgtgctatcccacaagttatggccattggtactttgaatgcttgttataa 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tatcaatttctgtgctatcccacaagttatggccattggtactttgaatgcttgttataa 349
Query: 1074 caattacaacgtcttcactggtgtagtcaaaattcgtaagggtcaaagagcattgatcgt 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 caattacaacgtcttcactggtgtagtcaaaattcgtaagggtcaaagagcattgatcgt 289
Query: 1134 cgatgctattcaatccaagggtctcactgctacctatgagctcttctttaagtttgccaa 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 cgatgctattcaatccaagggtctcactgctacctatgagctcttctttaagtttgccaa 229
Query: 1194 tgaaatgcgtcataaagttccaccaaatgatccatctgcaaagaaaaccattcaacatct 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tgaaatgcgtcataaagttccaccaaatgatccatctgcaaagaaaaccattcaacatct 169
Query: 1254 cgaatcaattgaaaaactctgcatagagaaattaggttatagaccttctggtttcaatga 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 cgaatcaattgaaaaactctgcatagagaaattaggttatagaccttctggtttcaatga 109
Query: 1314 tttcatctcttatgattggatggctgttacttctttagctgtttcttctgctttcttaat 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 tttcatctcttatgattggatggctgttacttctttagctgtttcttctgctttcttaat 49
Query: 1374 tgctcgtca 1382
|||||||||
Sbjct: 48 tgctcgtca 40
Score = 170 bits (86), Expect(3) = 0.0
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 689 tcttgttggcattggtcttagcaagatctttcatgctagtggtttagagagtgaatggtt 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tcttgttggcattggtcttagcaagatctttcatgctagtggtttagagagtgaatggtt 673
Query: 749 cgcaacagcagatgatgaatccaacc 774
||||||||||||||||||||||||||
Sbjct: 672 cgcaacagcagatgatgaatccaacc 647
Score = 36.2 bits (18), Expect(3) = 0.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1384 ggtccaaactttttttcg 1401
||||||||||||||||||
Sbjct: 39 ggtccaaactttttttcg 22
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,587,646,512
Number of extensions: 98170760
Number of successful extensions: 7740396
Number of sequences better than 10.0: 213
Length of query: 1556
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1532
Effective length of database: 97,308,875,965
Effective search space: 149077197978380
Effective search space used: 149077197978380
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 6.25 |
| Homology vs Protein |
Query= Contig-U09338-1 (Contig-U09338-1Q) /CSM_Contig/Contig-U09338-1Q.Seq.d
(1556 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q54DR1) RecName: Full=Squalene synthetase; Short=SQS; ... 431 0.0
DQ186630_1(DQ186630|pid:none) Panax notoginseng squalene synthas... 183 2e-82
AY787628_1(AY787628|pid:none) Centella asiatica squalene synthas... 180 5e-82
AB010148_1(AB010148|pid:none) Panax ginseng mRNA for squalene sy... 182 1e-81
D86410_1(D86410|pid:none) Glycyrrhiza glabra mRNA for squalene s... 183 3e-81
AM182330_1(AM182330|pid:none) Glycyrrhiza uralensis mRNA for squ... 184 6e-81
AC149293_3(AC149293|pid:none) Medicago truncatula clone mth2-78c... 184 6e-81
AJ430610_1(AJ430610|pid:none) Medicago truncatula mRNA for farne... 184 6e-81
AM182457_1(AM182457|pid:none) Panax quinquefolius mRNA for squal... 178 8e-81
AM182332_1(AM182332|pid:none) Glycyrrhiza eurycarpa mRNA for squ... 182 1e-80
AB433916_1(AB433916|pid:none) Euphorbia tirucalli EtSS mRNA for ... 184 2e-80
FJ906799_1(FJ906799|pid:none) Gynostemma pentaphyllum squalene s... 181 2e-80
AY964186_1(AY964186|pid:none) Bupleurum falcatum squalene syntha... 178 3e-79
AB102688_1(AB102688|pid:none) Lotus japonicus LjSqS mRNA for squ... 184 3e-79
DQ672339_1(DQ672339|pid:none) Polygala tenuifolia squalene synth... 178 3e-79
AM182331_1(AM182331|pid:none) Glycyrrhiza eurycarpa mRNA for squ... 184 6e-79
AM486171_1(AM486171|pid:none) Vitis vinifera contig VV78X025776.... 179 1e-78
AB022599_1(AB022599|pid:none) Solanum tuberosum PSS1 mRNA for sq... 179 6e-78
AF302464_1(AF302464|pid:none) Artemisia annua squalene synthase ... 176 8e-78
BT033742_1(BT033742|pid:none) Zea mays full-length cDNA clone ZM... 180 1e-77
EF585250_1(EF585250|pid:none) Psammosilene tunicoides squalene s... 179 1e-77
EF688567_1(EF688567|pid:none) Gossypium hirsutum squalene syntha... 177 2e-77
CP001325_541(CP001325|pid:none) Micromonas sp. RCC299 chromosome... 176 3e-77
CP000584_208(CP000584|pid:none) Ostreococcus lucimarinus CCE9901... 171 3e-77
AB007502_1(AB007502|pid:none) Zea mays mRNA for squalene synthas... 177 4e-77
FJ768961_1(FJ768961|pid:none) Salvia miltiorrhiza squalene synth... 176 1e-75
(P53800) RecName: Full=Squalene synthetase; Short=SQS; ... 177 2e-75
BC009251_1(BC009251|pid:none) Homo sapiens farnesyl-diphosphate ... 166 2e-75
AB007501_1(AB007501|pid:none) Oryza sativa Japonica Group mRNA f... 176 2e-75
I52090(I52090) squalene synthase - human &S76822_1(S76822|pid:n... 164 8e-75
AK297868_1(AK297868|pid:none) Homo sapiens cDNA FLJ55760 complet... 166 2e-74
AK076062_1(AK076062|pid:none) Mus musculus 11 days embryo whole ... 172 3e-74
(Q02769) RecName: Full=Squalene synthetase; Short=SQS; ... 172 5e-74
AK063341_1(AK063341|pid:none) Oryza sativa Japonica Group cDNA c... 162 5e-74
(P53798) RecName: Full=Squalene synthetase; Short=SQS; ... 172 9e-74
AF090313_1(AF090313|pid:none) Mus musculus squalene synthase (Fd... 172 9e-74
(Q32KR6) RecName: Full=Squalene synthetase; Short=SQS; ... 162 6e-73
AK316033_1(AK316033|pid:none) Homo sapiens cDNA, FLJ78932 comple... 166 3e-71
AK293545_1(AK293545|pid:none) Homo sapiens cDNA FLJ50447 complet... 166 3e-71
(P78589) RecName: Full=Squalene synthetase; Short=SQS; ... 147 2e-66
FM992689_774(FM992689|pid:none) Candida dubliniensis CD36 chromo... 149 3e-65
(P36596) RecName: Full=Squalene synthetase; Short=SQS; ... 142 9e-64
FJ169891_1(FJ169891|pid:none) Linum usitatissimum squalene synth... 145 4e-63
(Q9Y753) RecName: Full=Squalene synthetase; Short=SQS; ... 151 8e-63
T02167(T02167) farnesyl-diphosphate farnesyltransferase (EC 2.5.... 133 4e-61
CP000498_356(CP000498|pid:none) Pichia stipitis CBS 6054 chromos... 135 6e-60
BT066560_1(BT066560|pid:none) Zea mays full-length cDNA clone ZM... 180 6e-60
CR382136_110(CR382136|pid:none) Debaryomyces hansenii strain CBS... 138 1e-59
(O74165) RecName: Full=Squalene synthetase; Short=SQS; ... 132 5e-57
AK057726_1(AK057726|pid:none) Homo sapiens cDNA FLJ33164 fis, cl... 166 6e-57
AM270263_55(AM270263|pid:none) Aspergillus niger contig An12c006... 123 4e-56
AY096801_1(AY096801|pid:none) Nicotiana tabacum isolate 2 squale... 131 4e-56
AM850116_7(AM850116|pid:none) Nakaseomyces delphensis utp9, nvj1... 138 3e-54
(Q9HGZ6) RecName: Full=Squalene synthetase; Short=SQS; ... 133 3e-54
M63979_1(M63979|pid:none) Yeast squalene synthetase gene, comple... 134 1e-53
CR382124_362(CR382124|pid:none) Kluyveromyces lactis strain NRRL... 124 1e-53
X59959_1(X59959|pid:none) S.cerevisiae ERG9 gene for squalene sy... 134 1e-53
EU675328_1(EU675328|pid:none) Saccharomyces cerevisiae strain IN... 133 2e-53
(Q752X9) RecName: Full=Squalene synthetase; Short=SQS; ... 125 2e-52
CU633871_68(CU633871|pid:none) Podospora anserina genomic DNA ch... 116 1e-51
(Q7S4Z6) RecName: Full=Probable squalene synthetase; Sh... 112 2e-50
EU275246_1(EU275246|pid:none) Gibberella fujikuroi squalene synt... 112 8e-47
AM270027_23(AM270027|pid:none) Aspergillus niger contig An02c032... 109 7e-46
EU502717_1(EU502717|pid:none) Panax ginseng squalene synthase (s... 183 2e-44
AJ719973_1(AJ719973|pid:none) Gallus gallus mRNA for hypothetica... 173 1e-41
T05285(T05285)farnesyl-diphosphate farnesyltransferase (EC 2.5.1... 172 2e-41
AK301617_1(AK301617|pid:none) Homo sapiens cDNA FLJ53107 complet... 166 2e-39
BT072164_1(BT072164|pid:none) Salmo salar clone ssal-rgf-514-197... 161 7e-38
AF249900_1(AF249900|pid:none) Citrus sinensis squalene synthase ... 116 4e-33
CR954204_223(CR954204|pid:none) Ostreococcus tauri strain OTTH05... 135 2e-31
AF205790_1(AF205790|pid:none) Botryococcus braunii squalene synt... 114 1e-30
AF181557_1(AF181557|pid:none) Artemisia annua squalene synthase ... 113 3e-30
AM494968_331(AM494968|pid:none) Leishmania braziliensis chromoso... 133 2e-29
X99718_1(X99718|pid:none) U.maydis erg9 gene. 128 5e-28
CT005268_301(CT005268|pid:none) Leishmania major strain Friedlin... 127 8e-28
CQ798498_1(CQ798498|pid:none) Sequence 2 from Patent WO2004029255. 125 5e-27
U30455_1(U30455|pid:none) Leishmania major squalene synthase gen... 119 2e-25
AE017343_574(AE017343|pid:none) Cryptococcus neoformans var. neo... 116 2e-24
AC159404_36(AC159404|pid:none) Trypanosoma brucei chromosome 8 c... 114 7e-24
DQ494674_1(DQ494674|pid:none) Ganoderma lucidum squalene synthas... 112 4e-23
DQ153213_1(DQ153213|pid:none) Bupleurum falcatum squalene syntha... 87 2e-15
CU207296_3(CU207296|pid:none) Zebrafish DNA sequence from clone ... 81 4e-14
AB288350_1(AB288350|pid:none) Saccharomyces pastorianus ERG9 gen... 82 5e-14
CP001157_2010(CP001157|pid:none) Azotobacter vinelandii DJ, comp... 51 4e-13
CP001098_1578(CP001098|pid:none) Halothermothrix orenii H 168, c... 50 1e-12
CP000450_388(CP000450|pid:none) Nitrosomonas eutropha C91, compl... 54 3e-12
AX885510_1(AX885510|pid:none) Sequence 1373 from Patent EP1033401. 73 2e-11
CP000544_2249(CP000544|pid:none) Halorhodospira halophila SL1, c... 50 2e-09
CP000127_1263(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 46 4e-09
CP000271_2494(CP000271|pid:none) Burkholderia xenovorans LB400 c... 47 4e-08
AY596297_1316(AY596297|pid:none) Haloarcula marismortui ATCC 430... 58 5e-08
CP001053_37(CP001053|pid:none) Burkholderia phytofirmans PsJN ch... 44 7e-08
CP000571_418(CP000571|pid:none) Burkholderia pseudomallei 668 ch... 44 1e-07
AP008934_1103(AP008934|pid:none) Staphylococcus saprophyticus su... 48 1e-07
AJ494839_1(AJ494839|pid:none) Stigmatella aurantiaca partial sqs... 45 2e-07
CP000085_2142(CP000085|pid:none) Burkholderia thailandensis E264... 44 2e-07
CP000125_1760(CP000125|pid:none) Burkholderia pseudomallei 1710b... 44 2e-07
CP000573_327(CP000573|pid:none) Burkholderia pseudomallei 1106a ... 44 3e-07
AM774415_563(AM774415|pid:none) Halobacterium salinarum complete... 59 4e-07
CP000525_821(CP000525|pid:none) Burkholderia mallei SAVP1 chromo... 44 5e-07
BA000022_2851(BA000022|pid:none) Synechocystis sp. PCC 6803 DNA,... 41 7e-07
CP000817_2087(CP000817|pid:none) Lysinibacillus sphaericus C3-41... 43 9e-07
AM180088_1421(AM180088|pid:none) Haloquadratum walsbyi DSM 16790... 55 5e-06
CU633750_210(CU633750|pid:none) Cupriavidus taiwanensis str. LMG... 38 1e-05
BA000028_469(BA000028|pid:none) Oceanobacillus iheyensis HTE831 ... 45 2e-05
CP000090_3062(CP000090|pid:none) Ralstonia eutropha JMP134 chrom... 42 3e-05
CP001022_2418(CP001022|pid:none) Exiguobacterium sibiricum 255-1... 47 6e-05
CP000828_3571(CP000828|pid:none) Acaryochloris marina MBIC11017,... 52 6e-05
BA000045_4058(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ... 51 1e-04
CP001344_4533(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 51 1e-04
CP001219_2011(CP001219|pid:none) Acidithiobacillus ferrooxidans ... 50 2e-04
EU851908_1(EU851908|pid:none) Glycyrrhiza uralensis isolate G1-1... 50 3e-04
EU851906_1(EU851906|pid:none) Glycyrrhiza uralensis isolate D1-1... 50 3e-04
CR628336_124(CR628336|pid:none) Legionella pneumophila str. Pari... 42 6e-04
CP000806_1841(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 40 6e-04
CP000675_128(CP000675|pid:none) Legionella pneumophila str. Corb... 41 0.002
AE017354_110(AE017354|pid:none) Legionella pneumophila subsp. pn... 40 0.003
CR628337_110(CR628337|pid:none) Legionella pneumophila str. Lens... 40 0.003
CP001616_2933(CP001616|pid:none) Tolumonas auensis DSM 9187, com... 36 0.003
CP000360_1742(CP000360|pid:none) Acidobacteria bacterium Ellin34... 36 0.005
CP001504_1959(CP001504|pid:none) Burkholderia glumae BGR1 chromo... 33 0.006
CP000353_1989(CP000353|pid:none) Ralstonia metallidurans CH34 me... 44 0.021
CP000414_975(CP000414|pid:none) Leuconostoc mesenteroides subsp.... 36 0.021
AM260480_203(AM260480|pid:none) Ralstonia eutropha H16 chromosom... 32 0.027
DQ489736_788(DQ489736|pid:none) Leuconostoc citreum KM20, comple... 33 0.027
CP000655_188(CP000655|pid:none) Polynucleobacter necessarius sub... 43 0.027
CP001026_1046(CP001026|pid:none) Burkholderia ambifaria MC40-6 c... 31 0.035
CP001055_165(CP001055|pid:none) Elusimicrobium minutum Pei191, c... 32 0.045
CP000473_1244(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 32 0.098
CP000381_1001(CP000381|pid:none) Neisseria meningitidis 053442, ... 34 0.13
AE017282_772(AE017282|pid:none) Methylococcus capsulatus str. Ba... 41 0.14
T45141(T45141) farnesyl-diphosphate farnesyltransferase (EC 2.5.... 41 0.14
EF676285_1(EF676285|pid:none) Picea sitchensis clone WS0272_I03 ... 31 0.16
(Q9SSU8) RecName: Full=Phytoene synthase, chloroplastic; ... 32 0.16
AB205050_1(AB205050|pid:none) Chrysanthemum x morifolium PSY mRN... 31 0.16
DQ229827_1(DQ229827|pid:none) Daucus carota chloroplast phytoene... 32 0.17
DQ642445_1(DQ642445|pid:none) Triticum turgidum subsp. durum cul... 31 0.17
DQ157164_1(DQ157164|pid:none) Coffea canephora phytoene synthase... 30 0.20
AB253628_1(AB253628|pid:none) Prunus mume PmPSY-1 mRNA for phyto... 30 0.21
BT056024_1(BT056024|pid:none) Zea mays full-length cDNA clone ZM... 30 0.21
AY266046_1(AY266046|pid:none) Zea mays phytoene synthase 2 gene,... 30 0.22
AY822067_1(AY822067|pid:none) Prunus armeniaca phytoene synthase... 30 0.22
AY705390_1(AY705390|pid:none) Sorghum bicolor chloroplast phytoe... 30 0.26
AB011014_1(AB011014|pid:none) Gentiana lutea GENPSY4 mRNA for ph... 30 0.26
DQ356430_1(DQ356430|pid:none) Zea mays phytoene synthase 3 (PSY3... 30 0.26
EF203260_1(EF203260|pid:none) Gentiana lutea phytoene synthase 3... 30 0.26
AB011011_1(AB011011|pid:none) Gentiana lutea GENPSY1 mRNA for ph... 30 0.26
EU958083_1(EU958083|pid:none) Zea mays clone 1672524 phytoene sy... 30 0.26
DQ372936_1(DQ372936|pid:none) Zea mays phytoene synthase 3 (PSY3... 30 0.26
AY496865_1(AY496865|pid:none) Oncidium cv. 'Gower Ramsey' phytoe... 31 0.27
AP009386_981(AP009386|pid:none) Burkholderia multivorans ATCC 17... 32 0.27
CP000896_1362(CP000896|pid:none) Acholeplasma laidlawii PG-8A, c... 33 0.27
DQ192187_1(DQ192187|pid:none) Daucus carota subsp. sativus putat... 30 0.34
X67144_1(X67144|pid:none) L.esculentum (rY mutant) GTOM5 mRNA fo... 29 0.34
AF251015_1(AF251015|pid:none) Tagetes erecta phytoene synthase m... 30 0.34
EU096092_1(EU096092|pid:none) Triticum turgidum subsp. durum cul... 30 0.34
Y00521_1(Y00521|pid:none) Tomato fruit ripening specific mRNA. 29 0.34
S32170(S32170;S67951) phytoene synthetase - Myxococcus xanthus ... 31 0.35
CP000113_871(CP000113|pid:none) Myxococcus xanthus DK 1622, comp... 31 0.35
AG2031(AG2031) hypothetical protein alr1805 [imported] - Nostoc ... 39 0.40
CP000117_4779(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 39 0.40
FJ797304_1(FJ797304|pid:none) Actinidia deliciosa phytoene synth... 30 0.44
AY973631_1(AY973631|pid:none) Oncidium Gower Ramsey phytoene syn... 30 0.44
AE006470_1366(AE006470|pid:none) Chlorobium tepidum TLS, complet... 36 0.45
CP000103_2325(CP000103|pid:none) Nitrosospira multiformis ATCC 2... 37 0.46
DQ642442_1(DQ642442|pid:none) Triticum turgidum subsp. durum cul... 29 0.46
EF534738_1(EF534738|pid:none) Solanum lycopersicum cultivar Red ... 30 0.57
L25812_1(L25812|pid:none) Arabidopsis thaliana phytoene synthase... 30 0.57
(P37271) RecName: Full=Phytoene synthase, chloroplastic; ... 30 0.57
AY085565_1(AY085565|pid:none) Arabidopsis thaliana clone 15761 m... 30 0.57
AY494789_1(AY494789|pid:none) Momordica charantia var. abbreviat... 29 0.57
AJ304825_1(AJ304825|pid:none) Helianthus annuus mRNA for phytoen... 29 0.57
AJ308385_1(AJ308385|pid:none) Helianthus annuus mRNA for phytoen... 29 0.57
FJ169890_1(FJ169890|pid:none) Linum usitatissimum phytoene synth... 29 0.60
DQ666828_1(DQ666828|pid:none) Carica papaya phytoene synthase pr... 29 0.73
AY445521_1(AY445521|pid:none) Oryza sativa (indica cultivar-grou... 29 0.73
AY705389_1(AY705389|pid:none) Sorghum bicolor chloroplast phytoe... 30 0.73
AJ715786_1(AJ715786|pid:none) Oryza sativa mRNA for phytoene syn... 29 0.73
(P49085) RecName: Full=Phytoene synthase, chloroplastic; ... 30 0.74
AY324431_1(AY324431|pid:none) Zea mays chloroplast phytoene synt... 30 0.74
AY455286_1(AY455286|pid:none) Zea mays chloroplast phytoene synt... 30 0.74
FJ784889_1(FJ784889|pid:none) Fragaria x ananassa phytoene synth... 29 0.74
BT086218_1(BT086218|pid:none) Zea mays full-length cDNA clone ZM... 30 0.74
CP000152_1746(CP000152|pid:none) Burkholderia sp. 383 chromosome... 30 0.74
EU966147_1(EU966147|pid:none) Zea mays clone 292083 unknown mRNA. 30 0.75
DQ494214_1(DQ494214|pid:none) Citrullus lanatus phytoene synthas... 30 0.77
AY300454_1(AY300454|pid:none) Zea mays strain W-7 phytoene synth... 30 0.83
AY300400_1(AY300400|pid:none) Zea mays strain InbredLo32 phytoen... 30 0.83
AY300445_1(AY300445|pid:none) Zea mays strain W-17 phytoene synt... 30 0.83
AY300433_1(AY300433|pid:none) Zea mays strain PI406108 phytoene ... 30 0.83
AY300381_1(AY300381|pid:none) Zea mays strain 1033aCatsul phytoe... 30 0.83
AY300424_1(AY300424|pid:none) Zea mays strain Ames22754 phytoene... 30 0.83
EU649790_1(EU649790|pid:none) Triticum aestivum phytoene synthas... 30 0.94
EU649794_1(EU649794|pid:none) Triticum aestivum phytoene synthas... 30 0.94
EU650395_1(EU650395|pid:none) Triticum aestivum phytoene synthas... 30 0.94
EU649788_1(EU649788|pid:none) Triticum aestivum phytoene synthas... 30 0.94
EU650397_1(EU650397|pid:none) Triticum aestivum phytoene synthas... 30 0.94
FJ234424_1(FJ234424|pid:none) Triticum turgidum subsp. durum cul... 30 0.94
EU096090_1(EU096090|pid:none) Triticum turgidum subsp. durum cul... 30 0.94
AM481588_2(AM481588|pid:none) Vitis vinifera contig VV78X138380.... 29 0.94
EU649789_1(EU649789|pid:none) Triticum aestivum phytoene synthas... 30 0.95
AY789515_1(AY789515|pid:none) Salicornia europaea phytoene synth... 29 0.95
AY661705_1(AY661705|pid:none) Adonis palaestina phytoene synthas... 30 0.95
AP008215_1345(AP008215|pid:none) Oryza sativa (japonica cultivar... 29 0.95
CP000909_2631(CP000909|pid:none) Chloroflexus aurantiacus J-10-f... 37 0.96
CP001100_239(CP001100|pid:none) Chloroherpeton thalassium ATCC 3... 33 0.97
M90698_5(M90698|pid:none) Pantoea agglomerans CrtE (crtE), CrtX ... 29 0.97
DQ642443_1(DQ642443|pid:none) Triticum turgidum subsp. durum cul... 30 0.99
AJ889824_1(AJ889824|pid:none) Populus alba x Populus tremula par... 29 1.0
AK073290_1(AK073290|pid:none) Oryza sativa Japonica Group cDNA c... 30 1.2
AP008218_1416(AP008218|pid:none) Oryza sativa (japonica cultivar... 30 1.2
CP001116_131(CP001116|pid:none) Deinococcus deserti VCD115 plasm... 32 1.2
CP001097_1522(CP001097|pid:none) Chlorobium limicola DSM 245, co... 36 1.2
AY452768_1(AY452768|pid:none) Oryza sativa (japonica cultivar-gr... 30 1.3
AL935261_178(AL935261|pid:none) Lactobacillus plantarum strain W... 33 1.3
CP001154_2031(CP001154|pid:none) Laribacter hongkongensis HLHK9,... 30 1.3
CP001022_730(CP001022|pid:none) Exiguobacterium sibiricum 255-15... 35 1.3
AY024350_1(AY024350|pid:none) Oryza sativa (japonica cultivar-gr... 30 1.3
CP001615_2478(CP001615|pid:none) Exiguobacterium sp. AT1b, compl... 37 1.5
AE017126_166(AE017126|pid:none) Prochlorococcus marinus subsp. m... 29 1.6
CP001281_2095(CP001281|pid:none) Thauera sp. MZ1T, complete geno... 36 1.6
CP001099_764(CP001099|pid:none) Chlorobaculum parvum NCIB 8327, ... 35 2.1
CP000096_1323(CP000096|pid:none) Pelodictyon luteolum DSM 273, c... 35 2.1
CP000859_2937(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ... 37 2.6
AB114648_1(AB114648|pid:none) Citrus unshiu CitPSY mRNA for phyt... 29 3.0
AB114664_1(AB114664|pid:none) Citrus limon CitPSY mRNA for phyto... 29 3.0
CP001037_2646(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 36 3.3
(P37294) RecName: Full=Phytoene synthase; EC=2.5.1.32; ... 28 3.4
AE000513_847(AE000513|pid:none) Deinococcus radiodurans R1 chrom... 34 3.4
DQ641105_1(DQ641105|pid:none) Cucumis sativus clone CU4C11 phyto... 30 4.0
AC146760_19(AC146760|pid:none) Medicago truncatula clone mth2-17... 27 4.4
CP000922_2174(CP000922|pid:none) Anoxybacillus flavithermus WK1,... 36 4.4
AY184808_1(AY184808|pid:none) Citrus maxima phytoene synthase mR... 29 5.0
CP000975_2201(CP000975|pid:none) Methylacidiphilum infernorum V4... 27 5.3
CP001287_302(CP001287|pid:none) Cyanothece sp. PCC 8801, complet... 28 5.7
EF089402_17(EF089402|pid:none) Uncultured marine bacterium HF10_... 32 6.9
CP001331_288(CP001331|pid:none) Micromonas sp. RCC299 chromosome... 33 7.3
AC2035(AC2035) phytoene synthase [imported] - Nostoc sp. (strain... 30 7.4
CP000117_4765(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 30 7.4
CP000239_302(CP000239|pid:none) Synechococcus sp. JA-3-3Ab, comp... 29 7.4
(P22872) RecName: Full=Phytoene synthase; EC=2.5.1.32; ... 28 7.4
CP000083_1278(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 35 7.5
AP005750_3(AP005750|pid:none) Oryza sativa Japonica Group genomi... 29 7.6
BA000039_1559(BA000039|pid:none) Thermosynechococcus elongatus B... 28 9.5
BX293980_509(BX293980|pid:none) Mycoplasma mycoides subsp. mycoi... 35 9.7
CP000411_63(CP000411|pid:none) Oenococcus oeni PSU-1, complete g... 32 9.8
>(Q54DR1) RecName: Full=Squalene synthetase; Short=SQS;
Short=SS; EC=2.5.1.21; AltName:
Full=Farnesyl-diphosphate farnesyltransferase; AltName:
Full=FPP:FPP farnesyltransferase;
Length = 416
Score = 431 bits (1109), Expect(2) = 0.0
Identities = 211/211 (100%), Positives = 211/211 (100%)
Frame = +1
Query: 775 QMGLFLQKTNIIRDYLEDINEKRIFWPRDVWARYTLHLENFKEAKYQIPALHCLNDLITN 954
QMGLFLQKTNIIRDYLEDINEKRIFWPRDVWARYTLHLENFKEAKYQIPALHCLNDLITN
Sbjct: 206 QMGLFLQKTNIIRDYLEDINEKRIFWPRDVWARYTLHLENFKEAKYQIPALHCLNDLITN 265
Query: 955 ALSHALIALDYMSRLKNPQVINFCAIPQVMAIGTLNACYNNYNVFTGVVKIRKGQRALIV 1134
ALSHALIALDYMSRLKNPQVINFCAIPQVMAIGTLNACYNNYNVFTGVVKIRKGQRALIV
Sbjct: 266 ALSHALIALDYMSRLKNPQVINFCAIPQVMAIGTLNACYNNYNVFTGVVKIRKGQRALIV 325
Query: 1135 DAIQSKGLTATYELFFKFANEMRHKVPPNDPSAKKTIQHLESIEKLCIEKLGYRPSGFND 1314
DAIQSKGLTATYELFFKFANEMRHKVPPNDPSAKKTIQHLESIEKLCIEKLGYRPSGFND
Sbjct: 326 DAIQSKGLTATYELFFKFANEMRHKVPPNDPSAKKTIQHLESIEKLCIEKLGYRPSGFND 385
Query: 1315 FISYDWMAVTSLAVSSAFLIARHGPNFFSKL 1407
FISYDWMAVTSLAVSSAFLIARHGPNFFSKL
Sbjct: 386 FISYDWMAVTSLAVSSAFLIARHGPNFFSKL 416
Score = 337 bits (864), Expect(2) = 0.0
Identities = 180/225 (80%), Positives = 182/225 (80%), Gaps = 2/225 (0%)
Frame = +3
Query: 129 MQYMKSLAHPDEFLSLLKDWL--HWNHLSQXXXXXXXXXXXXGVTNY*IKHQGSFAFVIN 302
MQYMKSLAHPDEFLSLLK + SQ + N K SFAFVIN
Sbjct: 1 MQYMKSLAHPDEFLSLLKIGYTESFKPKSQLKENLGNKEWCYELLN---KTSRSFAFVIN 57
Query: 303 ELEPSLKDAICIFYLVLRGLDTIEDDTTVELNTKLPVLTSFSEGLYQPGYKVFGYGMNND 482
ELEPSLKDAICIFYLVLRGLDTIEDDTTVELNTKLPVLTSFSEGLYQPGYKVFGYGMNND
Sbjct: 58 ELEPSLKDAICIFYLVLRGLDTIEDDTTVELNTKLPVLTSFSEGLYQPGYKVFGYGMNND 117
Query: 483 EKNLVENFDKVVDVFLGLGDGYCTIIHDITRRMANGMSEFLQKSVVTLPEWDLYCHYVAG 662
EKNLVENFDKVVDVFLGLGDGYCTIIHDITRRMANGMSEFLQKSVVTLPEWDLYCHYVAG
Sbjct: 118 EKNLVENFDKVVDVFLGLGDGYCTIIHDITRRMANGMSEFLQKSVVTLPEWDLYCHYVAG 177
Query: 663 LVGIGXXXXLVGIGLSKIFHASGLESEWFATADDESNPNGFILTK 797
LVGIGLSKIFHASGLESEWFATADDESN G L K
Sbjct: 178 ---------LVGIGLSKIFHASGLESEWFATADDESNQMGLFLQK 213
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 2,260,096,132
Number of extensions: 45272742
Number of successful extensions: 116928
Number of sequences better than 10.0: 246
Number of HSP's gapped: 116597
Number of HSP's successfully gapped: 488
Length of query: 518
Length of database: 1,040,966,779
Length adjustment: 133
Effective length of query: 385
Effective length of database: 614,796,874
Effective search space: 236696796490
Effective search space used: 236696796490
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
1 |
| VH (FL, L) |
0 |
| VF (FL, S) |
8 |
| AH (FL, L) |
0 |
| AF (FL, S) |
2 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
1 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |