Contig-U09336-1 |
Contig ID |
Contig-U09336-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
gap included |
Contig length |
716 |
Chromosome number (1..6, M) |
5 |
Chromosome length |
5062330 |
Start point |
1024296 |
End point |
1025014 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
1 |
Number of EST |
2 |
Link to clone list |
U09336 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.15 |
Homology vs DNA |
Query= Contig-U09336-1 (Contig-U09336-1Q) /CSM_Contig/Contig-U09336-1Q.Seq.d (726 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU072025) Dictyostelium discoideum slug cDNA, clone SSD211. 182 1e-62 3 (C92190) Dictyostelium discoideum slug cDNA, clone SSD211. 109 1e-19 1 (EJ974749) 1093022108552 Global-Ocean-Sampling_GS-30-02-01-1... 56 0.002 1 (EJ186846) 1092344158012 Global-Ocean-Sampling_GS-27-01-01-1... 56 0.002 1 (EJ993868) 1093023071879 Global-Ocean-Sampling_GS-30-02-01-1... 52 0.030 1 (AF270939) Heterodoxus macropus mitochondrion, complete genome. 46 0.45 3 (FH395147) CHO_OF4296xo11r2.ab1 CHO_OF4 Nicotiana tabacum ge... 48 0.46 1 (FH395082) CHO_OF4296xo11r1.ab1 CHO_OF4 Nicotiana tabacum ge... 48 0.46 1 (FH395001) CHO_OF4296xo11f1.ab1 CHO_OF4 Nicotiana tabacum ge... 48 0.46 1 (FH199897) CHO_OF3068xg15r1.ab1 CHO_OF3 Nicotiana tabacum ge... 48 0.46 1 (ER520953) 1093015573275 Global-Ocean-Sampling_GS-35-01-01-1... 48 0.46 1 (EJ325960) 1092963383848 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.46 1 (EJ257695) 1095349019913 Global-Ocean-Sampling_GS-27-01-01-1... 48 0.46 1 (ER365849) 1093022018400 Global-Ocean-Sampling_GS-34-01-01-1... 32 1.3 3 (CT025622) Mouse DNA sequence from clone RP23-443N15 on chro... 46 1.8 1 (AC120548) Mus musculus chromosome 17, clone RP23-211H11, co... 46 1.8 1 (AC177665) Strongylocentrotus purpuratus clone R3-1017J15, W... 46 1.8 1 (AC168819) Strongylocentrotus purpuratus clone R3-13E5, WORK... 46 1.8 1 (DX403434) GK_Sa0004L24.b1 Gossypioides kirkii WGS library G... 46 1.8 1 (DN583731) 90930464 Sea Urchin primary mesenchyme cell cDNA ... 46 1.8 1 (CU104699) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 3.5 2 (AJ925886) Theileria annulata EST, clone tam009c04_q1k. 34 3.6 3 (AP010500) Lotus japonicus genomic DNA, chromosome 5, clone:... 34 3.6 2 (BX247898) Zebrafish DNA sequence from clone CH211-202M20 in... 32 3.6 2 (CU024872) Zebrafish DNA sequence from clone DKEY-58J5 in li... 34 3.6 2 (FE172117) LV_NC_RA02H16f Litopenaeus vannamei nerve cord cD... 40 3.7 2 (AM458785) Vitis vinifera contig VV78X260957.3, whole genome... 32 4.0 2 (AZ546064) ENTDZ55TF Entamoeba histolytica Sheared DNA Entam... 36 4.5 2 (EJ868789) 1093018299689 Global-Ocean-Sampling_GS-30-02-01-1... 42 5.1 2 (CP000728) Clostridium botulinum F str. Langeland, complete ... 38 5.3 14 (AX392733) Sequence 23 from Patent WO0212526. 36 5.4 5 (AR707080) Sequence 23 from patent US 6933145. 36 5.4 5 (CC479882) CH240_307E23.T7 CHORI-240 Bos taurus genomic clon... 40 6.1 2 (D50453) Bacillus subtilis DNA, 25-36 degree region. 38 6.5 3 (CG989198) CH240_146M22.TJ CHORI-240 Bos taurus genomic clon... 40 7.1 2 (CR382336) Zebrafish DNA sequence from clone CH211-125A6 in ... 44 7.2 1 (BX004837) Zebrafish DNA sequence from clone CH211-134F7 in ... 44 7.2 1 (BC077427) Xenopus laevis MGC82198 protein, mRNA (cDNA clone... 44 7.2 1 (AC147169) Xenopus tropicalis clone CH216-149I15, complete s... 44 7.2 1 (AC121981) Mus musculus BAC clone RP24-290K9 from 5, complet... 44 7.2 1 (AC193189) Pan troglodytes BAC clone CH251-550B5 from chromo... 44 7.2 1 (AC192443) Pan troglodytes BAC clone CH251-440J19 from chrom... 44 7.2 1 (AC188939) Pan troglodytes BAC clone CH251-496F1 from chromo... 44 7.2 1 (AP006689) Lotus japonicus genomic DNA, chromosome 4, clone:... 44 7.2 1 (AC213153) Populus trichocarpa clone POP047-O16, complete se... 44 7.2 1 (AL357312) Human DNA sequence from clone RP11-390F10 on chro... 44 7.2 1 (AC009415) Homo sapiens BAC clone RP11-576H9 from 7, complet... 44 7.2 1 (AC162706) Bos taurus clone CH240-116H19, WORKING DRAFT SEQU... 44 7.2 1 (AC153062) Bos taurus clone CH240-16P11, WORKING DRAFT SEQUE... 44 7.2 1 (AC148065) Bos taurus clone RP42-442E1, WORKING DRAFT SEQUEN... 44 7.2 1 (AC147294) Pan troglodytes chromosome UNK clone RP43-66I12, ... 44 7.2 1 (AC136952) Danio rerio clone ch211-31g3, WORKING DRAFT SEQUE... 44 7.2 1 (CU582928) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.2 1 (CU467867) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 44 7.2 1 (AL139337) Human DNA sequence *** SEQUENCING CANCELLED *** f... 44 7.2 1 (AC230244) Bos taurus clone CH240-516H4, WORKING DRAFT SEQUE... 44 7.2 1 (AC222419) Bos taurus clone CH240-417M4, WORKING DRAFT SEQUE... 44 7.2 1 (AC181422) Strongylocentrotus purpuratus clone R3-1112C5, WO... 44 7.2 1 (AC180221) Strongylocentrotus purpuratus clone R3-3008A8, WO... 44 7.2 1 (AC179370) Strongylocentrotus purpuratus clone R3-59K22, WOR... 44 7.2 1 (AC177551) Strongylocentrotus purpuratus clone R3-1026L10, W... 44 7.2 1 (AC176233) Strongylocentrotus purpuratus clone R3-3005E14, W... 44 7.2 1 (AC176117) Strongylocentrotus purpuratus clone R3-3023E5, WO... 44 7.2 1 (AC164415) Mus musculus chromosome 5 clone RP24-346M10 map 5... 44 7.2 1 (AQ483528) RPCI-11-240F12.TJ RPCI-11 Homo sapiens genomic cl... 44 7.2 1 (ER387181) 1094428685785 Global-Ocean-Sampling_GS-34-01-01-1... 44 7.2 1 (EK273456) 1095462267000 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.2 1 (EJ866181) 1093018279922 Global-Ocean-Sampling_GS-30-02-01-1... 44 7.2 1 (EJ820164) 1093017534189 Global-Ocean-Sampling_GS-30-02-01-1... 44 7.2 1 (EJ814827) 1093017510201 Global-Ocean-Sampling_GS-30-02-01-1... 44 7.2 1 (EJ804023) 1093017446733 Global-Ocean-Sampling_GS-30-02-01-1... 44 7.2 1 (EJ772612) 1092973902818 Global-Ocean-Sampling_GS-30-02-01-1... 44 7.2 1 (EJ760498) 1092963127612 Global-Ocean-Sampling_GS-30-02-01-1... 44 7.2 1 (EJ753575) 1092963057605 Global-Ocean-Sampling_GS-30-02-01-1... 44 7.2 1 (EJ751441) 1092963038566 Global-Ocean-Sampling_GS-30-02-01-1... 44 7.2 1 (EJ747624) 1092963011319 Global-Ocean-Sampling_GS-30-02-01-1... 44 7.2 1 (EJ696617) 1092956020982 Global-Ocean-Sampling_GS-30-02-01-1... 44 7.2 1 (EJ205364) 1092344339648 Global-Ocean-Sampling_GS-27-01-01-1... 44 7.2 1 (EI791910) CHORI518019A20TR BAC library from the breast cell... 44 7.2 1 (ED729520) GM_WBb0085P23.r GM_WBb Glycine max genomic clone ... 44 7.2 1 (DX476824) Cpl19059 Papaya Genomic DNA BAC Library Carica pa... 44 7.2 1 (DE449872) Bombyx mori genomic DNA, Fosmid clone:GBMFno42_a0... 44 7.2 1 (CG843137) Ynhw3751 HW-YUBAC Bos taurus genomic clone HW-YUB... 44 7.2 1 (CG674794) trs2526 trs Aegilops tauschii genomic clone trs08... 44 7.2 1 (BX195683) Danio rerio genomic clone DKEY-214O10, genomic su... 44 7.2 1 (CJ422261) Molgula tectiformis cDNA, larva clone:mtlv009l02,... 44 7.2 1 (CJ344937) Molgula tectiformis cDNA, embryo just before hatc... 44 7.2 1 (BQ099258) ph28d06.y2 Ostertagia ostertagi L3 pAMP1 v1 Oster... 44 7.2 1 (BG019700) dc67b01.x1 NICHD_XGC_Emb1 Xenopus laevis cDNA clo... 44 7.2 1 (AC111709) Rattus norvegicus clone CH230-40H1, WORKING DRAFT... 36 8.7 5 (AF250284) Amsacta moorei entomopoxvirus, complete genome. 36 8.9 8 (AJ011856) Saccharomyces cerevisiae complete mitochondrial g... 36 9.0 6 (EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co... 36 9.2 6 (AC025302) Homo sapiens clone RP11-680K19, WORKING DRAFT SEQ... 38 9.4 3
>(AU072025) Dictyostelium discoideum slug cDNA, clone SSD211. Length = 240
Score = 182 bits (92), Expect(3) = 1e-62 Identities = 92/92 (100%) Strand = Plus / Plus
Query: 149 gatggaacaaattgataaaatagaaatacttctaagagaatattcatatttagcaatggg 208 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 149 gatggaacaaattgataaaatagaaatacttctaagagaatattcatatttagcaatggg 208
Query: 209 aaaaataagagaggtagaaatattattaaagt 240 |||||||||||||||||||||||||||||||| Sbjct: 209 aaaaataagagaggtagaaatattattaaagt 240
Score = 65.9 bits (33), Expect(3) = 1e-62 Identities = 33/33 (100%) Strand = Plus / Plus
Query: 86 caatcttcactgtaaatagatttgtaaattact 118 ||||||||||||||||||||||||||||||||| Sbjct: 86 caatcttcactgtaaatagatttgtaaattact 118
Score = 50.1 bits (25), Expect(3) = 1e-62 Identities = 25/25 (100%) Strand = Plus / Plus
Query: 1 caacaataattaattaaaatcttta 25 ||||||||||||||||||||||||| Sbjct: 1 caacaataattaattaaaatcttta 25
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 515,230,175 Number of extensions: 35305371 Number of successful extensions: 3411097 Number of sequences better than 10.0: 94 Length of query: 726 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 702 Effective length of database: 97,308,875,965 Effective search space: 68310830927430 Effective search space used: 68310830927430 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.25 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |