| Contig-U09331-1 |
| Contig ID |
Contig-U09331-1 |
| Contig update |
2002. 9.13 |
| Contig sequence |
 |
| Gap |
gap included |
| Contig length |
771 |
| Chromosome number (1..6, M) |
3 |
| Chromosome length |
6358359 |
| Start point |
4714892 |
| End point |
4714141 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
1 |
| Number of EST |
2 |
| Link to clone list |
U09331 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11.15 |
| Homology vs DNA |
Query= Contig-U09331-1 (Contig-U09331-1Q) /CSM_Contig/Contig-U09331-1Q.Seq.d
(781 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(C84125) Dictyostelium discoideum slug cDNA, clone SSC829. 438 0.0 2
(AU071957) Dictyostelium discoideum slug cDNA, clone SSC829. 111 2e-43 3
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 34 8e-05 12
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 38 8e-04 14
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 40 0.003 13
(AE014846) Plasmodium falciparum 3D7 chromosome 12, section ... 36 0.005 10
(AX344573) Sequence 24 from Patent WO0200932. 38 0.006 11
(AC189531) Brassica rapa subsp. pekinensis clone KBrH001D10,... 42 0.007 6
(AC136107) Rattus norvegicus clone CH230-438D24, WORKING DRA... 54 0.008 1
(Z83233) Caenorhabditis elegans Cosmid K06B4. 40 0.011 4
(AY689437) Deerpox virus W-1170-84, complete genome. 36 0.013 8
(BH717652) BOHUV51TF BO_2_3_KB Brassica oleracea genomic clo... 52 0.032 1
(AC176681) Strongylocentrotus purpuratus clone R3-3088B04, W... 36 0.033 4
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3... 42 0.035 6
(AX392733) Sequence 23 from Patent WO0212526. 34 0.039 8
(AR707080) Sequence 23 from patent US 6933145. 34 0.039 8
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s... 38 0.041 10
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 38 0.066 13
(AL035475) Plasmodium falciparum MAL4P2. 34 0.066 13
(AX344550) Sequence 1 from Patent WO0200932. 38 0.071 8
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041... 36 0.079 2
(AL844506) Plasmodium falciparum chromosome 7. 34 0.093 16
(AE014838) Plasmodium falciparum 3D7 chromosome 11 section 3... 34 0.096 11
(AE014848) Plasmodium falciparum 3D7 chromosome 12, section ... 34 0.12 10
(CT030012) Zebrafish DNA sequence from clone DKEY-106G10 in ... 50 0.13 1
(CR388420) Zebrafish DNA sequence from clone DKEY-37H18 in l... 50 0.13 1
(AM488450) Vitis vinifera, whole genome shotgun sequence, co... 50 0.13 1
(AM462769) Vitis vinifera contig VV78X093246.6, whole genome... 50 0.13 1
(CU896587) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 50 0.13 1
(CT027731) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 50 0.13 1
(CR847888) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 50 0.13 1
(ED412388) AUAC-aac56d10.g1 Ascaris suum whole genome shotgu... 50 0.13 1
(ED061425) AUAC-aai89d10.b1 Ascaris suum whole genome shotgu... 50 0.13 1
(DE147751) Bombyx mori genomic DNA, Fosmid clone:RO0287-F13_R. 50 0.13 1
(AC196319) Myotis lucifugus clone CH235-317F9, WORKING DRAFT... 42 0.14 6
(AC005308) Plasmodium falciparum chromosome 12 clone 3D7, **... 36 0.15 8
(ED181396) AUAC-aai77c05.b1 Ascaris suum whole genome shotgu... 36 0.16 3
(AC109492) Homo sapiens chromosome 5 clone RP11-72L22, compl... 40 0.16 5
(AC005505) Plasmodium falciparum chromosome 12 clone 3D7, **... 32 0.17 10
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 34 0.17 17
(DU935572) 358273 Tomato EcoRI BAC Library Solanum lycopersi... 42 0.20 3
(AL844507) Plasmodium falciparum chromosome 8. 38 0.24 14
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9... 34 0.27 11
(AC016098) Homo sapiens, clone RP11-25P13, complete sequence. 40 0.28 5
(AC211081) Solanum lycopersicum chromosome 6 clone C06SLe000... 34 0.30 2
(BX908400) Zebrafish DNA sequence from clone CH211-166I5 in ... 36 0.30 6
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 34 0.31 11
(AX344552) Sequence 3 from Patent WO0200932. 36 0.31 9
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 34 0.31 13
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 34 0.33 11
(AC004153) Plasmodium falciparum chromosome 12 clone 3D7, **... 34 0.34 10
(Z81029) Caenorhabditis elegans Cosmid C01A2. 46 0.37 5
(AL844509) Plasmodium falciparum chromosome 13. 36 0.42 14
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 36 0.45 12
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 38 0.46 9
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 32 0.48 12
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s... 38 0.48 11
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 34 0.50 14
(AL133327) Human DNA sequence from clone RP11-77F13 on chrom... 48 0.50 1
(AC004004) Homo sapiens DNA from chromosome 19, cosmid R3253... 48 0.50 1
(AC090580) Homo sapiens chromosome 8 clone RP11-745O19 map 8... 48 0.50 1
(AC040984) Homo sapiens chromosome 10 clone RP11-15M11 map 1... 48 0.50 1
(AC006191) Homo sapiens chromosome 10 clone CIT-HSP-1306M19 ... 48 0.50 1
(FH334090) CHO_OF4587xc13f1.ab1 CHO_OF4 Nicotiana tabacum ge... 48 0.50 1
(EI963703) SB_BBc63-I04.R SB_BBc Sorghum bicolor genomic 3',... 48 0.50 1
(AC084365) Homo sapiens 12 BAC RP11-632B21 (Roswell Park Can... 40 0.52 7
(CK528667) rswfa0_007740.y1 swf Bombyx mori cDNA, mRNA seque... 40 0.54 2
(ER282290) 1092343405768 Global-Ocean-Sampling_GS-34-01-01-1... 38 0.57 3
(BD428860) Method and nucleic acids for pharmacogenomic meth... 38 0.59 4
(AX348339) Sequence 34 from Patent WO0202806. 38 0.59 4
(AU270140) Dictyostelium discoideum vegetative cDNA clone:VS... 34 0.59 3
(AC010801) Homo sapiens clone RP11-2L13, WORKING DRAFT SEQUE... 40 0.61 5
(ER322742) 1092344187609 Global-Ocean-Sampling_GS-34-01-01-1... 38 0.61 3
(BH135675) ENTNT31TF Entamoeba histolytica Sheared DNA Entam... 38 0.61 3
(AL110500) Caenorhabditis elegans YAC Y87G2A. 42 0.62 6
(AC161455) Mus musculus BAC clone RP23-272N23 from chromosom... 38 0.63 6
(BD428904) Method and nucleic acids for pharmacogenomic meth... 38 0.66 4
(AX348383) Sequence 78 from Patent WO0202806. 38 0.66 4
(AF000299) Caenorhabditis elegans cosmid E03H12, complete se... 38 0.72 4
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5... 34 0.74 11
(AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5... 32 0.74 11
(AE014850) Plasmodium falciparum 3D7 chromosome 12, section ... 32 0.75 11
(AE002145) Ureaplasma parvum serovar 3 str. ATCC 700970 sect... 40 0.75 3
(AL138638) Arabidopsis thaliana DNA chromosome 3, BAC clone ... 42 0.76 4
(AC179008) Strongylocentrotus purpuratus clone R3-1108K24, W... 38 0.76 8
(AM478986) Vitis vinifera, whole genome shotgun sequence, co... 36 0.77 3
(AM463867) Vitis vinifera contig VV78X258257.7, whole genome... 44 0.82 2
(AE001421) Plasmodium falciparum 3D7 chromosome 2 section 58... 36 0.84 4
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI... 32 0.88 11
(AX356494) Sequence 128 from Patent WO0181622. 34 0.90 8
(AX347027) Sequence 2098 from Patent WO0200928. 34 0.90 8
(AC137068) Mus musculus BAC clone RP23-283C17 from 3, comple... 40 0.94 3
(AC226510) Solanum lycopersicum chromosome 2 clone C02HBa017... 40 0.95 6
(CP000013) Borrelia garinii PBi, complete genome. 32 0.96 19
(AC160036) Bos taurus clone CH240-81N7, WORKING DRAFT SEQUEN... 34 1.0 2
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)... 32 1.0 11
(AC119660) Rattus norvegicus clone CH230-75N6, *** SEQUENCIN... 32 1.0 2
(AC024370) Homo sapiens chromosome 6 clone RP11-291I3 map 6,... 46 1.0 4
(AC133052) Rattus norvegicus clone CH230-225L10, WORKING DRA... 32 1.0 2
(AC224705) Bos taurus clone CH240-478F16, WORKING DRAFT SEQU... 34 1.0 2
>(C84125) Dictyostelium discoideum slug cDNA, clone SSC829.
Length = 512
Score = 438 bits (221), Expect(2) = 0.0
Identities = 221/221 (100%)
Strand = Plus / Plus
Query: 271 tggatgaaaacaatattatatcattttataggtccacagatgcatatggttgcttcacaa 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggatgaaaacaatattatatcattttataggtccacagatgcatatggttgcttcacaa 60
Query: 331 atttttcatggtttaaagttcattttaaaaatcatacatttaaaacatctgaacatgcat 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atttttcatggtttaaagttcattttaaaaatcatacatttaaaacatctgaacatgcat 120
Query: 391 tccaagcatttaaatttgaacacgagcaaaaaatatttttccaaattttaaattcaaaaa 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tccaagcatttaaatttgaacacgagcaaaaaatatttttccaaattttaaattcaaaaa 180
Query: 451 cagcgagtgaatcaaaaagaatagcacatttaaataatgat 491
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cagcgagtgaatcaaaaagaatagcacatttaaataatgat 221
Score = 351 bits (177), Expect(2) = 0.0
Identities = 177/177 (100%)
Strand = Plus / Plus
Query: 499 gaaaagattgggaaacaatcaaagatcaaattatgtatgaaatatgttttgaaaaattta 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 gaaaagattgggaaacaatcaaagatcaaattatgtatgaaatatgttttgaaaaattta 288
Query: 559 atcaaaatgatcatcttaaattaattttattggacactggaaatttaaaaattgttgaaa 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 atcaaaatgatcatcttaaattaattttattggacactggaaatttaaaaattgttgaaa 348
Query: 619 gtagtgaaaaagatttttattggggaattggtgatggtagtggtagaaatcaattag 675
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gtagtgaaaaagatttttattggggaattggtgatggtagtggtagaaatcaattag 405
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 955,069,292
Number of extensions: 70192200
Number of successful extensions: 6855969
Number of sequences better than 10.0: 485
Length of query: 781
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 757
Effective length of database: 97,308,875,965
Effective search space: 73662819105505
Effective search space used: 73662819105505
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 6.25 |
| Homology vs Protein |
Query= Contig-U09331-1 (Contig-U09331-1Q) /CSM_Contig/Contig-U09331-1Q.Seq.d
(781 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM746676_3367(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 120 4e-26
CP001175_1700(CP001175|pid:none) Listeria monocytogenes HCC23, c... 113 8e-24
AM263198_883(AM263198|pid:none) Listeria welshimeri serovar 6b s... 112 1e-23
CP000951_1917(CP000951|pid:none) Synechococcus sp. PCC 7002, com... 110 4e-23
CP000155_6693(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 108 1e-22
FM242711_896(FM242711|pid:none) Listeria monocytogenes Clip81459... 108 2e-22
AE017262_908(AE017262|pid:none) Listeria monocytogenes str. 4b F... 108 2e-22
CP001037_1681(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 107 3e-22
CP000753_1667(CP000753|pid:none) Shewanella baltica OS185, compl... 107 6e-22
CU928145_819(CU928145|pid:none) Escherichia coli 55989 chromosom... 104 3e-21
(Q323Z6) RecName: Full=Swarming motility protein ybiA; &CP00003... 104 3e-21
(Q0T6G3) RecName: Full=Swarming motility protein ybiA; &(Q83LU8... 104 3e-21
CU928160_807(CU928160|pid:none) Escherichia coli IAI1 chromosome... 104 4e-21
(P30176) RecName: Full=Swarming motility protein ybiA; &AP00904... 103 6e-21
CP000946_2785(CP000946|pid:none) Escherichia coli ATCC 8739, com... 103 6e-21
AM398681_2245(AM398681|pid:none) Flavobacterium psychrophilum JI... 103 8e-21
CP000828_2643(CP000828|pid:none) Acaryochloris marina MBIC11017,... 101 2e-20
BX294135_214(BX294135|pid:none) Rhodopirellula baltica SH 1 comp... 101 3e-20
CP001344_71(CP001344|pid:none) Cyanothece sp. PCC 7425, complete... 100 5e-20
CP000891_1721(CP000891|pid:none) Shewanella baltica OS195, compl... 99 2e-19
CP000875_353(CP000875|pid:none) Herpetosiphon aurantiacus ATCC 2... 99 2e-19
CP001037_4832(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 98 3e-19
FM954973_1479(FM954973|pid:none) Vibrio splendidus LGP32 chromos... 96 1e-18
CP000828_3613(CP000828|pid:none) Acaryochloris marina MBIC11017,... 96 1e-18
AP005065_12(AP005065|pid:none) Oryza sativa Japonica Group genom... 95 2e-18
AP008208_1258(AP008208|pid:none) Oryza sativa (japonica cultivar... 95 2e-18
AK065460_1(AK065460|pid:none) Oryza sativa Japonica Group cDNA c... 95 2e-18
CP000377_1897(CP000377|pid:none) Silicibacter sp. TM1040, comple... 94 4e-18
CP000790_2284(CP000790|pid:none) Vibrio harveyi ATCC BAA-1116 ch... 89 1e-16
EF583821_135(EF583821|pid:none) Bacillus phage 0305phi8-36, comp... 86 2e-15
CP000860_410(CP000860|pid:none) Candidatus Desulforudis audaxvia... 83 1e-14
CP000157_157(CP000157|pid:none) Erythrobacter litoralis HTCC2594... 81 4e-14
CR954207_234(CR954207|pid:none) Ostreococcus tauri strain OTTH05... 80 7e-14
AX546684_1(AX546684|pid:none) Sequence 3 from Patent WO02064794. 78 3e-13
AX546718_1(AX546718|pid:none) Sequence 37 from Patent WO02064794. 78 3e-13
BA000039_2463(BA000039|pid:none) Thermosynechococcus elongatus B... 76 1e-12
CP000744_3014(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 76 1e-12
CP001287_2027(CP001287|pid:none) Cyanothece sp. PCC 8801, comple... 70 7e-11
CP001028_263(CP001028|pid:none) Burkholderia ambifaria MC40-6 pl... 67 5e-10
AC159421_18(AC159421|pid:none) Trypanosoma brucei chromosome 7 c... 67 6e-10
CP000618_96(CP000618|pid:none) Burkholderia vietnamiensis G4 pla... 61 5e-08
AP008955_4542(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 59 2e-07
AY176327_4(AY176327|pid:none) Staphylococcus phage K, complete g... 59 2e-07
CP000282_405(CP000282|pid:none) Saccharophagus degradans 2-40, c... 58 3e-07
AC148171_7(AC148171|pid:none) Medicago truncatula clone mth2-30a... 57 5e-07
AF068713_1(AF068713|pid:none) Caenorhabditis elegans cosmid T24A... 57 5e-07
FM180568_3361(FM180568|pid:none) Escherichia coli 0127:H6 E2348/... 57 7e-07
AF016432_10(AF016432|pid:none) Caenorhabditis elegans cosmid C07... 57 9e-07
CU633453_111(CU633453|pid:none) Podospora anserina genomic DNA c... 56 1e-06
CU928158_2910(CU928158|pid:none) Escherichia fergusonii ATCC 354... 55 2e-06
CP000721_3478(CP000721|pid:none) Clostridium beijerinckii NCIMB ... 55 2e-06
CP001291_3137(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 55 3e-06
CP000884_5742(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 52 2e-05
CP001357_582(CP001357|pid:none) Brachyspira hyodysenteriae WA1, ... 52 2e-05
CP000471_1163(CP000471|pid:none) Magnetococcus sp. MC-1, complet... 52 2e-05
FJ168556_2(FJ168556|pid:none) Bodo saltans clone fosmid 93E01, c... 51 4e-05
AE014075_855(AE014075|pid:none) Escherichia coli CFT073, complet... 51 5e-05
CP000246_141(CP000246|pid:none) Clostridium perfringens ATCC 131... 50 6e-05
AM494943_11(AM494943|pid:none) Leishmania braziliensis chromosom... 50 8e-05
CT005245_13(CT005245|pid:none) Leishmania major strain Friedlin,... 49 2e-04
T34402(T34402) hypothetical protein C37C3.1 - Caenorhabditis ele... 48 3e-04
CP000247_797(CP000247|pid:none) Escherichia coli 536, complete g... 48 3e-04
AM502224_13(AM502224|pid:none) Leishmania infantum chromosome 6. 48 3e-04
CP001175_1698(CP001175|pid:none) Listeria monocytogenes HCC23, c... 47 5e-04
DQ003638_50(DQ003638|pid:none) Listeria phage A511, complete gen... 46 0.001
AF227196_1(AF227196|pid:none) Gill-associated virus from Austral... 45 0.002
EU784983_1(EU784983|pid:none) Gill-associated virus genotype 3 i... 44 0.008
EU785003_1(EU785003|pid:none) Gill-associated virus genotype 5 i... 43 0.010
EU785012_1(EU785012|pid:none) Gill-associated virus genotype 3 i... 43 0.010
EU784994_1(EU784994|pid:none) Gill-associated virus genotype 3 i... 43 0.013
EU784986_1(EU784986|pid:none) Gill-associated virus genotype 3 i... 43 0.013
EU785016_1(EU785016|pid:none) Gill-associated virus genotype 3 i... 43 0.013
EU785005_1(EU785005|pid:none) Gill-associated virus genotype 4 i... 43 0.013
EU784987_1(EU784987|pid:none) Gill-associated virus genotype 3 i... 43 0.013
EU785020_1(EU785020|pid:none) Gill-associated virus genotype 3 i... 43 0.013
EU853170_1(EU853170|pid:none) Yellow head virus ORF1b polyprotei... 42 0.017
EU784985_1(EU784985|pid:none) Gill-associated virus genotype 3 i... 42 0.022
EU785007_1(EU785007|pid:none) Gill-associated virus genotype 6 i... 42 0.029
AM235768_312(AM235768|pid:none) Pseudomonas fluorescens SBW25 pl... 42 0.029
EU784980_1(EU784980|pid:none) Gill-associated virus genotype 2 i... 42 0.029
EU785022_1(EU785022|pid:none) Gill-associated virus genotype 2 i... 41 0.037
EU785018_1(EU785018|pid:none) Gill-associated virus genotype 6 i... 41 0.049
AY052786_2(AY052786|pid:none) Yellow head virus strain Chachoeng... 41 0.049
(P34438) RecName: Full=Uncharacterized protein F44E2.8; &L23646... 41 0.049
EU487200_1(EU487200|pid:none) Yellow head virus, complete genome. 41 0.049
EU977580_1(EU977580|pid:none) Yellow head virus isolate YHV-PmA ... 41 0.049
EU784981_1(EU784981|pid:none) Gill-associated virus genotype 3 i... 39 0.18
AP009390_169(AP009390|pid:none) Enterococcus phage phiEF24C DNA,... 39 0.18
EU784982_1(EU784982|pid:none) Yellow head virus isolate THA-03-D... 37 0.70
AP008955_3603(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 37 0.92
CP001175_1969(CP001175|pid:none) Listeria monocytogenes HCC23, c... 37 0.92
AC148171_8(AC148171|pid:none) Medicago truncatula clone mth2-30a... 35 3.5
CP001139_511(CP001139|pid:none) Vibrio fischeri MJ11 chromosome ... 34 5.9
CP000020_519(CP000020|pid:none) Vibrio fischeri ES114 chromosome... 34 5.9
T22976(T22976;T23157) hypothetical protein F59A2.6 - Caenorhabdi... 33 7.8
>AM746676_3367(AM746676|pid:none) Sorangium cellulosum 'So ce 56'
complete genome.
Length = 145
Score = 120 bits (302), Expect = 4e-26
Identities = 66/147 (44%), Positives = 89/147 (60%), Gaps = 4/147 (2%)
Frame = +3
Query: 285 IISFYRSTDAYGCFTNFSWFKVHFKNHTFKTSEHAFQAFKF---EHEQKIFFQILNSKTA 455
+I FYRS DA+G F+NFS V K + TSEH FQA KF EHE+ I N+
Sbjct: 3 VIRFYRSGDAHGFFSNFSRHPVTLKGKVWPTSEHYFQAQKFPGTEHEEVI----RNAPGP 58
Query: 456 SESKRIAHLNNDKKRKDWETIKDQIMYEICFEKFNQNDHLKLILLDTGNLKIVESSEKDF 635
E+ R+ + R DWE +KD +M E+ KF Q++ L+ LLDTG+ ++VE + D
Sbjct: 59 GEAARMGRQRSRPLRPDWEQVKDDVMREVVLAKFTQHEDLRRALLDTGDAELVEHTANDA 118
Query: 636 YWGI-GDGSGRNQLGITLMKIREDLRK 713
YW GDGSGRN LG+ LM++R LR+
Sbjct: 119 YWADGGDGSGRNMLGVILMEVRAQLRR 145
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 817,698,389
Number of extensions: 14161127
Number of successful extensions: 35113
Number of sequences better than 10.0: 95
Number of HSP's gapped: 35021
Number of HSP's successfully gapped: 95
Length of query: 260
Length of database: 1,040,966,779
Length adjustment: 126
Effective length of query: 134
Effective length of database: 637,226,869
Effective search space: 85388400446
Effective search space used: 85388400446
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
1 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |