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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U09330-1
Contig ID Contig-U09330-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U09330-1 (Contig-U09330-1Q) /CSM_Contig/Contig-U09330-1Q.Seq.d
GTACTTTTAATAATAATAATAAAATTTTAAAATATAATCAAAAAAATGAG
TAAAAAATACGATAAATTAGGAAATGATGTATTCAATAAAGTTGAAAAAA
TTAATTCAGAATTATTCACATTAACATATGGAGCATTGGTTACACAATTA
ATAAAAGATTATGAAGATATTGAACAAGTTAATATAAAATTAGAACAAAT
GGGATATAATATAGGAATTCGTTTAATTGAAGAATTTTTAGCAAAATCAG
GTATTGGTAGATGTTCAGATTTTATAGAGACAGCAGAAGTTATTGCAAAA
GTTGGTTTTAAAATGTTTTTAGGTGTAAATGCTCATGTTGGTGATTGGGA
TGCAGATAGAAAGGAATTCCATTTAACAATTGAAGATAATCCATTGATTG
ATTTCGTCGAATTACCAGATCAATATAAACATAAACTCTACTATTCAAAT
ATTCTATGTGGTGTAATGAGAGGTGCTTTGGAAATGGTTCAAATGAAAGT
TAAATGCACTTTTGTTAAATGTACTTTATCTGATGATTCAACTTCAGAAA
TTAAAGTAGTTTTAGAAGAAGTTTTATCTGATATGATT----------TA
AAAATAAAAAAAAAAAAAAAAAAAAGNCATTGGGNGTTGGTTTTGTTTTG
GGTATTTCTAAAATTAGTTATTTTTATTTTTCCCCGCTTTTTTTTTTTTC
ATTTTTTATTTATTCTATATATAAACATAAATAAACAATATTTGGATGAA
AAATTAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gap gap included
Contig length 772
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 7583160
End point 7582387
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U09330
List of clone(s) 

est1=SSC640F,1,589
est2=SSC640Z,590,774
Translated Amino Acid sequence 
vlliiiikf*NIIKKMSKKYDKLGNDVFNKVEKINSELFTLTYGALVTQLIKDYEDIEQV
NIKLEQMGYNIGIRLIEEFLAKSGIGRCSDFIETAEVIAKVGFKMFLGVNAHVGDWDADR
KEFHLTIEDNPLIDFVELPDQYKHKLYYSNILCGVMRGALEMVQMKVKCTFVKCTLSDDS
TSEIKVVLEEVLSDMI---

---KIKKKKKKXHWXLVLFWVFLKLVIFIFPRFFFFHFLFILYININKQYLDEKLKKKKK
KKK
Translated Amino Acid sequence (All Frames) 
Frame A:
vlliiiikf*NIIKKMSKKYDKLGNDVFNKVEKINSELFTLTYGALVTQLIKDYEDIEQV
NIKLEQMGYNIGIRLIEEFLAKSGIGRCSDFIETAEVIAKVGFKMFLGVNAHVGDWDADR
KEFHLTIEDNPLIDFVELPDQYKHKLYYSNILCGVMRGALEMVQMKVKCTFVKCTLSDDS
TSEIKVVLEEVLSDMI---

---*k*kkkkkkxigxwfcfgyf*n*lflffpaffffifylfyi*t*inniwmkn*kkkk
kkkk

Frame B:
yf*****nfki*skk*vkntin*emmysiklkkliqnysh*hmehwlhn**kimkilnkl
i*n*nkwdii*efv*lknf*qnqvlvdvqil*rqqkllqklvlkcf*v*mlmlvigmqie
rnsi*qlkiih*lissnyqinininstiqifyvv**evlwkwfk*klnalllnvlylmiq
lqklk*f*kkfyli*---

---knkkkkkkkxlgvgfvlgiskisyfyfsplfffsffiysiykhk*tifg*kikkkkk
kkkk

Frame C:
tfnnnnkilkynqkne*kir*irk*ciq*s*kn*friihiniwsigytinkrl*ry*ts*
ykirtngi*yrnsfn*rifskiryw*mfrfyrdsrsyckswf*nvfrckcscw*lgcr*k
gipfnn*r*sid*frritrsi*t*tllfkysmwcnercfgngsnes*mhfc*myfi**fn
frn*ssfrrsfi*yd---

---KIKKKKKKXHWXLVLFWVFLKLVIFIFPRFFFFHFLFILYININKQYLDEKLKKKKK
KKK
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U09330-1 (Contig-U09330-1Q)
/CSM_Contig/Contig-U09330-1Q.Seq.d
         (782 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09330-1 (Contig-U09330-1Q) /CSM_Contig/Conti...  1074  0.0
Contig-U10843-1 (Contig-U10843-1Q) /CSM_Contig/Conti...    42  9e-04
Contig-U02808-1 (Contig-U02808-1Q) /CSM_Contig/Conti...    42  9e-04
Contig-U03923-1 (Contig-U03923-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U14035-1 (Contig-U14035-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U13830-1 (Contig-U13830-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U14133-1 (Contig-U14133-1Q) /CSM_Contig/Conti...    36  0.055
Contig-U14366-1 (Contig-U14366-1Q) /CSM_Contig/Conti...    34  0.22
Contig-U14162-1 (Contig-U14162-1Q) /CSM_Contig/Conti...    34  0.22
Contig-U11288-1 (Contig-U11288-1Q) /CSM_Contig/Conti...    34  0.22

>Contig-U09330-1 (Contig-U09330-1Q) /CSM_Contig/Contig-U09330-1Q.Seq.d
          Length = 782

 Score = 1074 bits (542), Expect = 0.0
 Identities = 542/542 (100%)
 Strand = Plus / Plus

                                                                       
Query: 47  tgagtaaaaaatacgataaattaggaaatgatgtattcaataaagttgaaaaaattaatt 106
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47  tgagtaaaaaatacgataaattaggaaatgatgtattcaataaagttgaaaaaattaatt 106

                                                                       
Query: 107 cagaattattcacattaacatatggagcattggttacacaattaataaaagattatgaag 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 cagaattattcacattaacatatggagcattggttacacaattaataaaagattatgaag 166

                                                                       
Query: 167 atattgaacaagttaatataaaattagaacaaatgggatataatataggaattcgtttaa 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 atattgaacaagttaatataaaattagaacaaatgggatataatataggaattcgtttaa 226

                                                                       
Query: 227 ttgaagaatttttagcaaaatcaggtattggtagatgttcagattttatagagacagcag 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 ttgaagaatttttagcaaaatcaggtattggtagatgttcagattttatagagacagcag 286

                                                                       
Query: 287 aagttattgcaaaagttggttttaaaatgtttttaggtgtaaatgctcatgttggtgatt 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 aagttattgcaaaagttggttttaaaatgtttttaggtgtaaatgctcatgttggtgatt 346

                                                                       
Query: 347 gggatgcagatagaaaggaattccatttaacaattgaagataatccattgattgatttcg 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gggatgcagatagaaaggaattccatttaacaattgaagataatccattgattgatttcg 406

                                                                       
Query: 407 tcgaattaccagatcaatataaacataaactctactattcaaatattctatgtggtgtaa 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tcgaattaccagatcaatataaacataaactctactattcaaatattctatgtggtgtaa 466

                                                                       
Query: 467 tgagaggtgctttggaaatggttcaaatgaaagttaaatgcacttttgttaaatgtactt 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tgagaggtgctttggaaatggttcaaatgaaagttaaatgcacttttgttaaatgtactt 526

                                                                       
Query: 527 tatctgatgattcaacttcagaaattaaagtagttttagaagaagttttatctgatatga 586
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tatctgatgattcaacttcagaaattaaagtagttttagaagaagttttatctgatatga 586

             
Query: 587 tt 588
           ||
Sbjct: 587 tt 588


 Score = 95.6 bits (48), Expect = 7e-20
 Identities = 48/48 (100%)
 Strand = Plus / Plus

                                                           
Query: 708 atttattctatatataaacataaataaacaatatttggatgaaaaatt 755
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 atttattctatatataaacataaataaacaatatttggatgaaaaatt 755


 Score = 79.8 bits (40), Expect = 4e-15
 Identities = 43/43 (100%)
 Strand = Plus / Plus

                                                      
Query: 628 cattgggngttggttttgttttgggtatttctaaaattagtta 670
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 cattgggngttggttttgttttgggtatttctaaaattagtta 670


>Contig-U10843-1 (Contig-U10843-1Q) /CSM_Contig/Contig-U10843-1Q.Seq.d
          Length = 1281

 Score = 42.1 bits (21), Expect = 9e-04
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 735 acaatatttggatgaaaaatt 755
           |||||||||||||||||||||
Sbjct: 442 acaatatttggatgaaaaatt 422


>Contig-U02808-1 (Contig-U02808-1Q) /CSM_Contig/Contig-U02808-1Q.Seq.d
          Length = 560

 Score = 42.1 bits (21), Expect = 9e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 85  aataaagttgaaaaaattaat 105
           |||||||||||||||||||||
Sbjct: 52  aataaagttgaaaaaattaat 72


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9857
Number of Sequences: 6905
Number of extensions: 9857
Number of successful extensions: 976
Number of sequences better than 10.0: 119
length of query: 782
length of database: 5,674,871
effective HSP length: 16
effective length of query: 766
effective length of database: 5,564,391
effective search space: 4262323506
effective search space used: 4262323506
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.15
Homology vs DNA 
Query= Contig-U09330-1 (Contig-U09330-1Q) /CSM_Contig/Contig-U09330-1Q.Seq.d
         (782 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC115588) Dictyostelium discoideum chromosome 2 map complem...   955   0.0    2
(AU071854) Dictyostelium discoideum slug cDNA, clone SSC640.      266   1e-66  1
(FD387165) Nad03b_160_F06_C005.g1 Nuphar advena flower bud l...    70   3e-16  2
(ES731316) Nad03b_30_B06_C005.g1 Nuphar advena flower bud li...    70   3e-16  2
(FF438272) G142P60229RC6.T0 Acorn worm juvenile pCMVSport6 l...    80   6e-15  3
(FF619501) G825P5229RE1.T0 Acorn worm normalized gastrula pE...    80   8e-15  3
(FF485190) G708P5103RG11.T0 Acorn worm normalized gastrula p...    80   8e-15  3
(FF503601) G709P5167RF11.T0 Acorn worm normalized neurula pE...    80   1e-14  3
(EY436304) qm_NP25.C12 Milwaukee estuary quagga mussel gills...    50   8e-09  3
(C84074) Dictyostelium discoideum slug cDNA, clone SSC640.         74   9e-09  1
(DY831500) CTOY7001.b1_A23.ab1 CTO(XYZ) dandelion Taraxacum ...    64   8e-06  1
(DY824783) CTOY16389.b1_I18.ab1 CTO(XYZ) dandelion Taraxacum...    64   8e-06  1
(DR400203) TKN055G08_627928 Taraxacum kok-saghyz root cDNA l...    64   8e-06  1
(DT747029) EST1180878 Aquilegia cDNA library Aquilegia formo...    50   1e-05  2
(DV202862) Sa_em0_02k16_5prime Dogfish Shark Embryo-derived ...    50   2e-05  2
(EL358792) CCEM3625.b1_B19.ab1 CCE(LMS) endive Cichorium end...    62   3e-05  1
(EH691297) CCIM3477.b1_I05.ab1 CCI(LMS) chicory Cichorium in...    62   3e-05  1
(EX338174) GQ03005.SP6_L15 GQ030 - Xylem planings - daytime ...    62   3e-05  1
(EF083894) Picea sitchensis clone WS0273_I10 unknown mRNA.         60   1e-04  1
(ES864346) WS027102.CR_J16 SS-IL-A-FL-14 Picea sitchensis cD...    60   1e-04  1
(ES661200) WS03913.C21_J22 SS-B-24 Picea sitchensis cDNA clo...    60   1e-04  1
(ES421689) pm_OSU_shoot_CA_2003-04_050G11 Douglas-fir cold a...    60   1e-04  1
(ES421480) pm_OSU_shoot_CA_2003-04_048E02 Douglas-fir cold a...    60   1e-04  1
(ES418623) pm_OSU_shoot_CA_2003-04_012G10 Douglas-fir cold a...    60   1e-04  1
(ES249147) WS0371.C21_O23 SS-B-N-22 Picea sitchensis cDNA cl...    60   1e-04  1
(DV998018) GQ02749.B3_G05 GQ099: Mixed spruce tissues Picea ...    60   1e-04  1
(DR588753) WS0349.C21_A14 WS-SE-N-A-19 Picea glauca cDNA clo...    60   1e-04  1
(DR586625) WS0342.B21_K04 WS-SE-N-A-19 Picea glauca cDNA clo...    60   1e-04  1
(DR582043) WS0304.B21_I22 WS-SE-A-16 Picea glauca cDNA clone...    60   1e-04  1
(DR578504) WS00749.C21_E16 WS-PS-N-A-8 Picea glauca cDNA clo...    60   1e-04  1
(DR568124) WS02620.BR_O14 WS-PP-N-A-12 Picea glauca cDNA clo...    60   1e-04  1
(DR563501) WS02627.C21_O06 WS-PP-N-A-12 Picea glauca cDNA cl...    60   1e-04  1
(DR560945) WS02620.C21.1_O14 WS-PP-N-A-12 Picea glauca cDNA ...    60   1e-04  1
(DR555930) WS0327.C21_E15 WS-MC-N-A-20 Picea glauca cDNA clo...    60   1e-04  1
(DR542403) WS01038.B21_J23 SS-R-N-A-11 Picea sitchensis cDNA...    60   1e-04  1
(DR534856) WS02744.C21_I22 SS-IL-A-FL-14 Picea sitchensis cD...    60   1e-04  1
(DR529396) WS0273.B21_I10 SS-IL-A-FL-14 Picea sitchensis cDN...    60   1e-04  1
(DR516840) WS02744.CR_I22 SS-IL-A-FL-14 Picea sitchensis cDN...    60   1e-04  1
(DR511174) WS0273.BR_I10 SS-IL-A-FL-14 Picea sitchensis cDNA...    60   1e-04  1
(DR484295) WS02814.C21_H24 SS-IB-A-FL-13 Picea sitchensis cD...    60   1e-04  1
(DR478648) WS02814.CR_H24 SS-IB-A-FL-13 Picea sitchensis cDN...    60   1e-04  1
(DR470756) WS00951.B21_I15 IS-B-N-A-10 Picea engelmannii x P...    60   1e-04  1
(DR449966) WS00951.BR_I15 IS-B-N-A-10 Picea engelmannii x Pi...    60   1e-04  1
(CO483336) GQ0197.TB_J15 GQ019: Clean ROOTS systems - P trea...    60   1e-04  1
(CO482393) GQ0197.B3_J15 GQ019: Clean ROOTS systems - P trea...    60   1e-04  1
(CO476167) GQ00611.B3_K24 GQ006: Cambium and phloem from mat...    60   1e-04  1
(AM173635) Picea abies EST, clone K0000400033H09F1.                60   1e-04  1
(CO474916) GQ00611.TB_K24 GQ006: Cambium and phloem from mat...    60   1e-04  1
(CO224237) WS01021.B21_D12 SS-R-N-A-11 Picea sitchensis cDNA...    60   1e-04  1
(CN638283) 200F04_550879 Douglas-fir cDNA library PmIFG_73-6...    60   1e-04  1
(CF434763) EST671108 normalized cDNA library of onion Allium...    60   1e-04  1
(BW258774) Ciona intestinalis cDNA, clone:cign019j07, 5' end...    60   1e-04  1
(BW258649) Ciona intestinalis cDNA, clone:cign019b17, 5' end...    60   1e-04  1
(BP024511) Ciona intestinalis cDNA, clone:cits33n15, 5' end,...    60   1e-04  1
(FK173087) XABT194304.b1 Gateway compatible cien cDNA librar...    60   1e-04  1
(FK086911) XABT140452.b1 Gateway compatible cien cDNA librar...    60   1e-04  1
(FD744561) WS04226.C21_G14 SS-NE-27 Picea sitchensis cDNA cl...    60   1e-04  1
(EX425618) GQ03811.B7_C02 GQ038 - Stem - Active growth Picea...    60   1e-04  1
(EX403193) GQ03507.B7_A21 GQ035 - Needles - End of season Pi...    60   1e-04  1
(EX389041) GQ03313.SP6_G21 GQ033 - Terminal leader (Normaliz...    60   1e-04  1
(EX388671) GQ03313.B7_G21 GQ033 - Terminal leader (Normalize...    60   1e-04  1
(EX382277) GQ03304.SP6_B01 GQ033 - Terminal leader (Normaliz...    60   1e-04  1
(EX381906) GQ03304.B7_B01 GQ033 - Terminal leader (Normalize...    60   1e-04  1
(EX380835) GQ03302.SP6_A01 GQ033 - Terminal leader (Normaliz...    60   1e-04  1
(EX380470) GQ03302.B7_A01 GQ033 - Terminal leader (Normalize...    60   1e-04  1
(EX374919) GQ03230.B7_M11 GQ032 - Shoot tip (Normalized libr...    60   1e-04  1
(EX374553) GQ03230.B7.1_M11 GQ032 - Shoot tip (Normalized li...    60   1e-04  1
(EX372917) GQ03226.B7_F05 GQ032 - Shoot tip (Normalized libr...    60   1e-04  1
(EX362544) GQ03205.SP6_L17 GQ032 - Shoot tip (Normalized lib...    60   1e-04  1
(EX362183) GQ03205.B7_L17 GQ032 - Shoot tip (Normalized libr...    60   1e-04  1
(EX355767) GQ03118.B7_D08 GQ031 - Xylem Scrapings (Normalize...    60   1e-04  1
(EX355180) GQ03116.B7_J12 GQ031 - Xylem Scrapings (Normalize...    60   1e-04  1
(EX337919) GQ03005.B7_L15 GQ030 - Xylem planings - daytime a...    60   1e-04  1
(EX331539) GQ02903.B7_A06 GQ029 - Xylem scrapings - AT NITE ...    60   1e-04  1
(EX323057) GQ02819.SP6_M07 GQ028 - Cambium / phloem scrappin...    60   1e-04  1
(EX322713) GQ02819.B7_M07 GQ028 - Cambium / phloem scrapping...    60   1e-04  1
(AV999726) Ciona intestinalis cDNA, clone:cicl29a23, 5' end,...    60   1e-04  1
(AV987096) Ciona intestinalis cDNA, clone:cicl51f12, 5' end,...    60   1e-04  1
(CN770294) tad87c03.y2 Hydra EST Darmstadt I Hydra magnipapi...    36   0.001  3
(CN774370) taf61e06.y2 Hydra EST Darmstadt I Hydra magnipapi...    36   0.001  3
(CN770192) tad87c03.x2 Hydra EST Darmstadt I Hydra magnipapi...    36   0.002  3
(EX371521) GQ03222.B7_H11 GQ032 - Shoot tip (Normalized libr...    56   0.002  1
(CN623998) tae58b09.y1 Hydra EST Darmstadt I Hydra magnipapi...    36   0.004  3
(CK749467) pam01-5ms3-b07 Pam01 Persea americana cDNA clone ...    50   0.004  2
(CK756098) pam01-7ms2-h05 Pam01 Persea americana cDNA clone ...    50   0.005  2
(FD502360) Pam01b_8_G06_C013.g1 Persea americana flower bud ...    50   0.006  2
(FD507476) Pam01b_92_B04_C013.g1 Persea americana flower bud...    50   0.006  2
(EL360489) CCEM5197.b1_I04.ab1 CCE(LMS) endive Cichorium end...    54   0.008  1
(EH705680) CCIS4856.b1_O14.ab1 CCI(LMS) chicory Cichorium in...    54   0.008  1
(EC723033) MJE00000897 Malawimonas jakobiformis Home made (1...    54   0.008  1
(DT598385) she01-18ms3-g10 She01 Saruma henryi cDNA clone sh...    54   0.008  1
(DT589043) she01-30ms1-b02 She01 Saruma henryi cDNA clone sh...    54   0.008  1
(AM661139) Entamoeba moshkovskii FIC GSS, clone mosh106c06.p1k.    42   0.021  2
(DB914236) Idiosepius paradoxus cDNA, clone:Ip_aB_015_M12, 5...    36   0.024  3
(EX928660) ll15f09.g7 Cycas ovule - normalized (NYBG) Cycas ...    42   0.026  2
(EX927006) lk95c02.g7 Cycas ovule - normalized (NYBG) Cycas ...    42   0.026  2
(EX927506) ll02b08.g7 Cycas ovule - normalized (NYBG) Cycas ...    42   0.026  2
(EX927638) ll03g02.g7 Cycas ovule - normalized (NYBG) Cycas ...    42   0.026  2
(EX927359) lk99d08.g7 Cycas ovule - normalized (NYBG) Cycas ...    42   0.026  2
(EX927757) ll05b02.g7 Cycas ovule - normalized (NYBG) Cycas ...    42   0.026  2

>(AC115588) Dictyostelium discoideum chromosome 2 map
            complement(5515123-5500836) strain AX4, complete
            sequence.
          Length = 14287

 Score =  955 bits (482), Expect(2) = 0.0
 Identities = 482/482 (100%)
 Strand = Plus / Plus


Query: 107  cagaattattcacattaacatatggagcattggttacacaattaataaaagattatgaag 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9189 cagaattattcacattaacatatggagcattggttacacaattaataaaagattatgaag 9248


Query: 167  atattgaacaagttaatataaaattagaacaaatgggatataatataggaattcgtttaa 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9249 atattgaacaagttaatataaaattagaacaaatgggatataatataggaattcgtttaa 9308


Query: 227  ttgaagaatttttagcaaaatcaggtattggtagatgttcagattttatagagacagcag 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9309 ttgaagaatttttagcaaaatcaggtattggtagatgttcagattttatagagacagcag 9368


Query: 287  aagttattgcaaaagttggttttaaaatgtttttaggtgtaaatgctcatgttggtgatt 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9369 aagttattgcaaaagttggttttaaaatgtttttaggtgtaaatgctcatgttggtgatt 9428


Query: 347  gggatgcagatagaaaggaattccatttaacaattgaagataatccattgattgatttcg 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9429 gggatgcagatagaaaggaattccatttaacaattgaagataatccattgattgatttcg 9488


Query: 407  tcgaattaccagatcaatataaacataaactctactattcaaatattctatgtggtgtaa 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9489 tcgaattaccagatcaatataaacataaactctactattcaaatattctatgtggtgtaa 9548


Query: 467  tgagaggtgctttggaaatggttcaaatgaaagttaaatgcacttttgttaaatgtactt 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9549 tgagaggtgctttggaaatggttcaaatgaaagttaaatgcacttttgttaaatgtactt 9608


Query: 527  tatctgatgattcaacttcagaaattaaagtagttttagaagaagttttatctgatatga 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9609 tatctgatgattcaacttcagaaattaaagtagttttagaagaagttttatctgatatga 9668


Query: 587  tt 588
            ||
Sbjct: 9669 tt 9670

 Score = 73.8 bits (37), Expect(2) = 0.0
 Identities = 37/37 (100%)
 Strand = Plus / Plus


Query: 712  attctatatataaacataaataaacaatatttggatg 748
            |||||||||||||||||||||||||||||||||||||
Sbjct: 9812 attctatatataaacataaataaacaatatttggatg 9848

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 697,482,591
Number of extensions: 43396250
Number of successful extensions: 3791796
Number of sequences better than 10.0: 459
Length of query: 782
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 758
Effective length of database: 97,308,875,965
Effective search space: 73760127981470
Effective search space used: 73760127981470
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.25
Homology vs Protein 
Query= Contig-U09330-1 (Contig-U09330-1Q) /CSM_Contig/Contig-U09330-1Q.Seq.d
         (782 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86K94) RecName: Full=Trafficking protein particle complex subu...   355   7e-97
EF083894_1(EF083894|pid:none) Picea sitchensis clone WS0273_I10 ...   209   1e-52
AM435597_1(AM435597|pid:none) Vitis vinifera contig VV78X067770....   202   7e-51
FN392319_75(FN392319|pid:none) Pichia pastoris GS115 chromosome ...   200   5e-50
(Q5ZI57) RecName: Full=Trafficking protein particle complex subu...   199   1e-49
BC091013_1(BC091013|pid:none) Xenopus tropicalis trafficking pro...   198   2e-49
BX927161_1(BX927161|pid:none) Zebrafish DNA sequence from clone ...   196   5e-49
BT082493_1(BT082493|pid:none) Anoplopoma fimbria clone afim-evh-...   196   9e-49
DQ000502_1(DQ000502|pid:none) Synthetic construct clone PSF:6217...   195   2e-48
BT079221_1(BT079221|pid:none) Esox lucius clone eluc-evq-503-080...   195   2e-48
(O43617) RecName: Full=Trafficking protein particle complex subu...   195   2e-48
BT058404_1(BT058404|pid:none) Salmo salar clone Contig407 Traffi...   195   2e-48
BT057364_1(BT057364|pid:none) Salmo salar clone ssal-eve-524-070...   194   2e-48
AC084380_19(AC084380|pid:none) Oryza sativa chromosome 3 BAC OSJ...   194   3e-48
EU960584_1(EU960584|pid:none) Zea mays clone 226353 trafficking ...   193   5e-48
BT035798_1(BT035798|pid:none) Zea mays full-length cDNA clone ZM...   193   5e-48
BT042399_1(BT042399|pid:none) Zea mays full-length cDNA clone ZM...   191   2e-47
BT049625_1(BT049625|pid:none) Salmo salar clone ssal-eve-524-234...   191   3e-47
EU971364_1(EU971364|pid:none) Zea mays clone 363018 trafficking ...   190   5e-47
AM920436_1183(AM920436|pid:none) Penicillium chrysogenum Wiscons...   189   9e-47
(Q9P6P5) RecName: Full=Transport protein particle subunit bet3; ...   187   2e-46
AM910987_229(AM910987|pid:none) Plasmodium knowlesi strain H chr...   186   9e-46
CP000498_682(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...   181   3e-44
AL035476_57(AL035476|pid:none) Plasmodium falciparum MAL4P3.  &A...   180   4e-44
CR382126_698(CR382126|pid:none) Kluyveromyces lactis strain NRRL...   178   2e-43
(P36149) RecName: Full=Transport protein particle 22 kDa subunit...   177   3e-43
CU633454_97(CU633454|pid:none) Podospora anserina genomic DNA ch...   177   4e-43
CR940347_851(CR940347|pid:none) Theileria annulata strain Ankara...   174   2e-42
CR380957_346(CR380957|pid:none) Candida glabrata strain CBS138 c...   173   5e-42
CP001575_431(CP001575|pid:none) Micromonas sp. RCC299 chromosome...   172   1e-41
BT077047_1(BT077047|pid:none) Caligus rogercresseyi clone crog-e...   164   3e-39
AE016820_669(AE016820|pid:none) Ashbya gossypii (= Eremothecium ...   164   3e-39
AE014296_1763(AE014296|pid:none) Drosophila melanogaster chromos...   150   6e-35
AY815461_1(AY815461|pid:none) Schistosoma japonicum SJCHGC04981 ...   149   1e-34
FN357420_20(FN357420|pid:none) Schistosoma mansoni genome sequen...   148   2e-34
AC159451_44(AC159451|pid:none) Trypanosoma brucei chromosome 8 c...   141   3e-32
CP000588_311(CP000588|pid:none) Ostreococcus lucimarinus CCE9901...   134   3e-30
CT005255_147(CT005255|pid:none) Leishmania major strain Friedlin...   131   2e-29
AE017347_97(AE017347|pid:none) Cryptococcus neoformans var. neof...   118   2e-25
BT060786_1(BT060786|pid:none) Zea mays full-length cDNA clone ZM...   108   2e-22
AY737054_1(AY737054|pid:none) Oreochromis mossambicus clone Ov06...    60   6e-08
CR380957_280(CR380957|pid:none) Candida glabrata strain CBS138 c...    42   0.029
(Q9P7N9) RecName: Full=Transport protein particle subunit trs31;...    42   0.029
FN392321_1129(FN392321|pid:none) Pichia pastoris GS115 chromosom...    38   0.32
AM850117_15(AM850117|pid:none) Nakaseomyces delphensis STP1 regi...    38   0.41
CP001141_334(CP001141|pid:none) Phaeodactylum tricornutum CCAP 1...    37   0.71
CP001139_8(CP001139|pid:none) Vibrio fischeri MJ11 chromosome I,...    37   0.92
(Q9D289) RecName: Full=Trafficking protein particle complex subu...    36   1.2
AL844505_107(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    36   1.6
CP000020_8(CP000020|pid:none) Vibrio fischeri ES114 chromosome I...    35   2.1
AY714828_1(AY714828|pid:none) Uncultured archaeon GZfos18H11 clo...    35   2.7
AE006641_1279(AE006641|pid:none) Sulfolobus solfataricus P2, com...    35   2.7
(Q32L78) RecName: Full=Trafficking protein particle complex subu...    35   3.5
AE016819_641(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    34   4.6
CP001400_767(CP001400|pid:none) Sulfolobus islandicus M.14.25, c...    34   4.6
FN392319_87(FN392319|pid:none) Pichia pastoris GS115 chromosome ...    34   6.0
(Q5F359) RecName: Full=Trafficking protein particle complex subu...    34   6.0

>(Q86K94) RecName: Full=Trafficking protein particle complex subunit
           3;  &AC115588_3(AC115588|pid:none)
          Length = 186

 Score =  355 bits (912), Expect = 7e-97
 Identities = 177/177 (100%), Positives = 177/177 (100%)
 Frame = +1

Query: 58  YDKLGNDVFNKVEKINSELFTLTYGALVTQLIKDYEDIEQVNIKLEQMGYNIGIRLIEEF 237
           YDKLGNDVFNKVEKINSELFTLTYGALVTQLIKDYEDIEQVNIKLEQMGYNIGIRLIEEF
Sbjct: 5   YDKLGNDVFNKVEKINSELFTLTYGALVTQLIKDYEDIEQVNIKLEQMGYNIGIRLIEEF 64

Query: 238 LAKSGIGRCSDFIETAEVIAKVGFKMFLGVNAHVGDWDADRKEFHLTIEDNPLIDFVELP 417
           LAKSGIGRCSDFIETAEVIAKVGFKMFLGVNAHVGDWDADRKEFHLTIEDNPLIDFVELP
Sbjct: 65  LAKSGIGRCSDFIETAEVIAKVGFKMFLGVNAHVGDWDADRKEFHLTIEDNPLIDFVELP 124

Query: 418 DQYKHKLYYSNILCGVMRGALEMVQMKVKCTFVKCTLSDDSTSEIKVVLEEVLSDMI 588
           DQYKHKLYYSNILCGVMRGALEMVQMKVKCTFVKCTLSDDSTSEIKVVLEEVLSDMI
Sbjct: 125 DQYKHKLYYSNILCGVMRGALEMVQMKVKCTFVKCTLSDDSTSEIKVVLEEVLSDMI 181

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 858,063,674
Number of extensions: 14897068
Number of successful extensions: 45636
Number of sequences better than 10.0: 57
Number of HSP's gapped: 45555
Number of HSP's successfully gapped: 57
Length of query: 260
Length of database: 1,040,966,779
Length adjustment: 126
Effective length of query: 134
Effective length of database: 637,226,869
Effective search space: 85388400446
Effective search space used: 85388400446
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.57  gvh: 0.44  alm: 0.22  top: 0.27  tms: 0.07  mit: 0.26  mip: 0.00
 nuc: 0.32  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: nuclear
	 20.0 %: vesicles of secretory system
	 16.0 %: cytoplasmic
	 12.0 %: Golgi
	 12.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum
	  4.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for Contig-U09330-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0