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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01558-1
Contig ID Contig-U01558-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01558-1 (Contig-U01558-1Q) /CSM_Contig/Contig-U01558-1Q.Seq.d
AAAATAAAAAAATAAAATAAAAAAAAAAAATAAAATAAAATAAAATAAAA
CTCAACAATAAATATTTCTGTATTTATAACAATATATATAAACCATTGTT
TTTTTTAGAAGAAAACAATAACTAAATAATAATAAAATGATGGAGAATCT
ATTTGGTGATGAAGTTGAAGTACCTTTATTAGTTCAATTATGTACTCAAA
GAATTAAAGATTCATT----------CAACTGTTGAAAGTAGAATTGGTA
GATATGTTGATACAGAGGAATTGTGGAAAAGACACTGTCATATAATATCA
CCAGAGAAAAGACATACATTAAAGGATGACGAAAGTTGGAGAGATTTATT
TACAATTTTAGAGAGAGAATATCAAAATAAAACCAAGAAAACTGGTGAAG
CATTAAGAAAGATTTATAATAATGCTGCAAATAATAAGAAATCAAAACAA
ATTAAAGTTTTAAACGATGTTGTGACTCCAACCGCTTCAAAGAGATGGAG
TGGCACAGTTAGTAAAACTCCATCCTATAAACAAAGCGGTAGTTCTTCAC
CTGGCAAATATAGTAATGGTAGTCCAATAAGTAGAAGTGAATCAAGCAGC
AGTGGTAGCGGTGGTGGTGGTAGTGGTAGTTATGGTAATGTTTTTAAACC
CTCTGCTTCAAATCAACCAAAATTAATGGCAAAAGTTTTAAAAGAACATA
ATAGGAAATTTAAATAATTTTAAATACAAAAAAATAATACAAAAAAATAA
TACAAAAAAAATACAAAAAAAATAC
Gap gap included
Contig length 765
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 3983753
End point 3984519
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 3
Link to clone list U01558
List of clone(s) 

est1=SSB610F,1,217
est2=SSG688E,218,765
est3=SSB610Z,358,767
Translated Amino Acid sequence 
k*knkikkknkik*nktqq*iflyl*qyi*tivffrrkq*LNNNKMMENLFGDEVEVPLL
VQLCTQRIKDS---

---TVESRIGRYVDTEELWKRHCHIISPEKRHTLKDDESWRDLFTILEREYQNKTKKTGE
ALRKIYNNAANNKKSKQIKVLNDVVTPTASKRWSGTVSKTPSYKQSGSSSPGKYSNGSPI
SRSESSSSGSGGGGSGSYGNVFKPSASNQPKLMAKVLKEHNRKFK*f*iqknntkk*ykk
ntkki
Translated Amino Acid sequence (All Frames) 
Frame A:
kikk*nkkkk*nkik*nstinisvfitiyinhcff*kktitk***ndgesiw**s*stfi
ssimyskn*rfi---

---qllkvelvdmliqrncgkdtvi*yhqrkdih*rmtkvgeiylqf*renikikprklv
kh*erfiimlqiirnqnklkf*tml*lqplqrdgvaqlvklhpinkavvlhlanivmvvq
*vevnqaavvavvvvvvvmvmflnpllqinqn*wqkf*kniignlnnfkykkiiqknntk
kiqkky

Frame B:
k*knkikkknkik*nktqq*iflyl*qyi*tivffrrkq*LNNNKMMENLFGDEVEVPLL
VQLCTQRIKDS---

---nc*k*nw*ic*yrgivektlsynitrektyikg*rklerfiynfrerisk*nqenw*
sikkdl**cck**eiktn*sfkrccdsnrfkemewhs**nsil*tkr*fftwqi**w*sn
k*k*ikqqw*rwww*w*lw*cf*tlcfkstkingksfkrt**ei*iilntkk*ykkiiqk
kykkn

Frame C:
nkkik*kkkik*nkiklnnkyfciynniykplffleennn*iiik*wriylvmklkyly*
fnyvlkelkih---

---TVESRIGRYVDTEELWKRHCHIISPEKRHTLKDDESWRDLFTILEREYQNKTKKTGE
ALRKIYNNAANNKKSKQIKVLNDVVTPTASKRWSGTVSKTPSYKQSGSSSPGKYSNGSPI
SRSESSSSGSGGGGSGSYGNVFKPSASNQPKLMAKVLKEHNRKFK*f*iqknntkk*ykk
ntkki
own update 2004. 6. 7
Homology vs CSM-cDNA 
Query= Contig-U01558-1 (Contig-U01558-1Q)
/CSM_Contig/Contig-U01558-1Q.Seq.d
         (775 letters)

Database: CSM
           8361 sequences; 7,895,291 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01558-1 (Contig-U01558-1Q) /CSM_Contig/Conti...  1080  0.0
Contig-U11698-1 (Contig-U11698-1Q) /CSM_Contig/Conti...    46  8e-05
Contig-U08227-1 (Contig-U08227-1Q) /CSM_Contig/Conti...    46  8e-05
Contig-U12087-1 (Contig-U12087-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U11661-1 (Contig-U11661-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U13802-1 (Contig-U13802-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U12001-1 (Contig-U12001-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U11340-1 (Contig-U11340-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U11184-1 (Contig-U11184-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U10990-1 (Contig-U10990-1Q) /CSM_Contig/Conti...    42  0.001

>Contig-U01558-1 (Contig-U01558-1Q) /CSM_Contig/Contig-U01558-1Q.Seq.d
          Length = 775

 Score = 1080 bits (545), Expect = 0.0
 Identities = 575/575 (100%)
 Strand = Plus / Plus

                                                                       
Query: 107 agaagaaaacaataactaaataataataaaatgatggagaatctatttggtgatgaagtt 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 agaagaaaacaataactaaataataataaaatgatggagaatctatttggtgatgaagtt 166

                                                                       
Query: 167 gaagtacctttattagttcaattatgtactcaaagaattaaagattcattnnnnnnnnnn 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 gaagtacctttattagttcaattatgtactcaaagaattaaagattcattnnnnnnnnnn 226

                                                                       
Query: 227 caactgttgaaagtagaattggtagatatgttgatacagaggaattgtggaaaagacact 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 caactgttgaaagtagaattggtagatatgttgatacagaggaattgtggaaaagacact 286

                                                                       
Query: 287 gtcatataatatcaccagagaaaagacatacattaaaggatgacgaaagttggagagatt 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gtcatataatatcaccagagaaaagacatacattaaaggatgacgaaagttggagagatt 346

                                                                       
Query: 347 tatttacaattttagagagagaatatcaaaataaaaccaagaaaactggtgaagcattaa 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tatttacaattttagagagagaatatcaaaataaaaccaagaaaactggtgaagcattaa 406

                                                                       
Query: 407 gaaagatttataataatgctgcaaataataagaaatcaaaacaaattaaagttttaaacg 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gaaagatttataataatgctgcaaataataagaaatcaaaacaaattaaagttttaaacg 466

                                                                       
Query: 467 atgttgtgactccaaccgcttcaaagagatggagtggcacagttagtaaaactccatcct 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 atgttgtgactccaaccgcttcaaagagatggagtggcacagttagtaaaactccatcct 526

                                                                       
Query: 527 ataaacaaagcggtagttcttcacctggcaaatatagtaatggtagtccaataagtagaa 586
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ataaacaaagcggtagttcttcacctggcaaatatagtaatggtagtccaataagtagaa 586

                                                                       
Query: 587 gtgaatcaagcagcagtggtagcggtggtggtggtagtggtagttatggtaatgttttta 646
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gtgaatcaagcagcagtggtagcggtggtggtggtagtggtagttatggtaatgttttta 646

                                              
Query: 647 aaccctctgcttcaaatcaaccaaaattaatggca 681
           |||||||||||||||||||||||||||||||||||
Sbjct: 647 aaccctctgcttcaaatcaaccaaaattaatggca 681


>Contig-U11698-1 (Contig-U11698-1Q) /CSM_Contig/Contig-U11698-1Q.Seq.d
          Length = 1510

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 601  agtggtagcggtggtggtggtagtggtagtt 631
            |||||| | ||||||||||||||||||||||
Sbjct: 1271 agtggtggtggtggtggtggtagtggtagtt 1301


 Score = 42.1 bits (21), Expect = 0.001
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 602  gtggtagcggtggtggtggtagtggtagt 630
            ||||||| |||||||||||| ||||||||
Sbjct: 1266 gtggtagtggtggtggtggtggtggtagt 1294


>Contig-U08227-1 (Contig-U08227-1Q) /CSM_Contig/Contig-U08227-1Q.Seq.d
          Length = 1211

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 604 ggtagcggtggtggtggtagtggtagt 630
           |||||||||||| ||||||||||||||
Sbjct: 768 ggtagcggtggtagtggtagtggtagt 794


 Score = 34.2 bits (17), Expect = 0.30
 Identities = 26/29 (89%)
 Strand = Plus / Plus

                                        
Query: 611 gtggtggtggtagtggtagttatggtaat 639
           ||||| ||||||||||||||  |||||||
Sbjct: 805 gtggtagtggtagtggtagtggtggtaat 833


 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 611 gtggtggtggtagtggtagt 630
           ||||| ||||||||||||||
Sbjct: 799 gtggtagtggtagtggtagt 818


 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 611 gtggtggtggtagtggtagt 630
           ||||| ||||||||||||||
Sbjct: 781 gtggtagtggtagtggtagt 800


 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 611 gtggtggtggtagtggtagt 630
           ||||| ||||||||||||||
Sbjct: 787 gtggtagtggtagtggtagt 806


 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 611 gtggtggtggtagtggtagt 630
           ||||| ||||||||||||||
Sbjct: 793 gtggtagtggtagtggtagt 812


  Database: CSM
    Posted date:  Jun 7, 2004  8:33 AM
  Number of letters in database: 7,895,291
  Number of sequences in database:  8361
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 28,175
Number of Sequences: 8361
Number of extensions: 28175
Number of successful extensions: 3842
Number of sequences better than 10.0: 533
length of query: 775
length of database: 7,895,291
effective HSP length: 16
effective length of query: 759
effective length of database: 7,761,515
effective search space: 5890989885
effective search space used: 5890989885
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5. 1
Homology vs DNA 
Query= Contig-U01558-1 (Contig-U01558-1Q) /CSM_Contig/Contig-U01558-1Q.Seq.d
         (775 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C89954) Dictyostelium discoideum slug cDNA, clone SSG688.        876   0.0    1
(AU037207) Dictyostelium discoideum slug cDNA, clone SSB610.      581   e-161  1
(AU071476) Dictyostelium discoideum slug cDNA, clone SSB610.      218   2e-52  1
(EY329757) CAWY2955.fwd CAWY Helobdella robusta Subtracted E...    60   1e-04  1
(EY329756) CAWY2955.rev CAWY Helobdella robusta Subtracted E...    60   1e-04  1
(AR555591) Sequence 10722 from patent US 6747137.                  56   2e-04  2
(AC184356) Strongylocentrotus purpuratus clone R3-3116G17, W...    56   0.002  1
(AC179087) Strongylocentrotus purpuratus clone R3-4009K06, W...    56   0.002  1
(AC178401) Strongylocentrotus purpuratus clone R3-1113M10, W...    56   0.002  1
(AC177195) Strongylocentrotus purpuratus clone R3-4018K13, W...    56   0.002  1
(AC168798) Strongylocentrotus purpuratus clone R3-13I7, WORK...    56   0.002  1
(DL265274) METHODS FOR ANALYZING GENES OF INDUSTRIAL YEASTS.       54   0.008  1
(DJ131723) Method for identification of useful proteins deri...    54   0.008  1
(AC117355) Rattus norvegicus clone CH230-293L5, WORKING DRAF...    54   0.008  1
(AC108535) Rattus norvegicus clone CH230-149D15, WORKING DRA...    54   0.008  1
(FE749131) CAYC5372.g1 CAYC Petrolisthes cinctipes heart, ne...    54   0.008  1
(FE748794) CAYC5180.g1 CAYC Petrolisthes cinctipes heart, ne...    54   0.008  1
(AC180846) Strongylocentrotus purpuratus clone R3-3070P10, W...    52   0.012  2
(AC009008) Homo sapiens chromosome 5 clone XXp1-1130G3, WORK...    42   0.024  3
(CZ722665) OC__Ba0048J12.f OC__Ba Oryza coarctata genomic cl...    40   0.026  2
(CZ881734) OC__Ba0284I21.f OC__Ba Oryza coarctata genomic cl...    40   0.026  2
(CZ874023) OC__Ba0273J16.f OC__Ba Oryza coarctata genomic cl...    40   0.026  2
(CZ829322) OC__Ba0210I23.r OC__Ba Oryza coarctata genomic cl...    40   0.027  2
(DE226514) Trifolium pratense DNA, clone:RCG18969.                 38   0.028  2
(EF523849) Limnoria chilensis clone Lchi22 microsatellite se...    52   0.032  1
(AC150001) Strongylocentrotus purpuratus clone R3-60F6, WORK...    52   0.032  1
(AP007534) Lotus japonicus genomic DNA, chromosome 4, clone:...    52   0.032  1
(AC181321) Strongylocentrotus purpuratus clone R3-115E19, WO...    52   0.032  1
(AC179606) Strongylocentrotus purpuratus clone R3-1028P05, W...    52   0.032  1
(ER098727) 1095521889033 Global-Ocean-Sampling_GS-33-01-01-1...    52   0.032  1
(CZ756074) OC__Ba0107M13.f OC__Ba Oryza coarctata genomic cl...    52   0.032  1
(FK671965) CCBO1354.b1 CCBO Cochliobolus heterostrophus, Che...    52   0.032  1
(FK671923) CCBO1331.b1 CCBO Cochliobolus heterostrophus, Che...    52   0.032  1
(FE756751) CAYF5222.g2 CAYF Petrolisthes cinctipes heart, wh...    52   0.032  1
(FE756750) CAYF5222.b1 CAYF Petrolisthes cinctipes heart, wh...    52   0.032  1
(BJ528691) Oryzias latipes cDNA clone:MF01SSB033H02, 5' end ...    46   0.072  2
(AC201542) Strongylocentrotus purpuratus clone R3-3102A15, W...    40   0.079  2
(DQ288858) Spodoptera litura granulovirus isolate SlGV-K1, c...    50   0.13   1
(AL807383) Mouse DNA sequence from clone RP23-286N14 on chro...    50   0.13   1
(AC171111) Mus musculus BAC clone RP24-131J20 from chromosom...    50   0.13   1
(AC169675) Mus musculus BAC clone RP24-200J3 from chromosome...    50   0.13   1
(AC163287) Mus musculus BAC clone RP23-279E21 from chromosom...    50   0.13   1
(AC121948) Mus musculus BAC clone RP24-215A14 from 8, comple...    50   0.13   1
(AC064868) Homo sapiens BAC clone RP11-473E10 from 2, comple...    50   0.13   1
(AC155826) Mus musculus chromosome 8 clone RP23-12E20, WORKI...    50   0.13   1
(AC109403) Rattus norvegicus clone CH230-251B6, *** SEQUENCI...    50   0.13   1
(AC097794) Rattus norvegicus clone CH230-61H13, *** SEQUENCI...    50   0.13   1
(AC073804) Mus musculus clone RP23-458N3, WORKING DRAFT SEQU...    50   0.13   1
(AL158811) Human DNA sequence *** SEQUENCING IN PROGRESS ***...    50   0.13   1
(AC222927) Bos taurus clone CH240-434P14, WORKING DRAFT SEQU...    50   0.13   1
(AC180847) Strongylocentrotus purpuratus clone R3-3025N11, W...    50   0.13   1
(AC178303) Strongylocentrotus purpuratus clone R3-3101A23, W...    50   0.13   1
(AC176715) Strongylocentrotus purpuratus clone R3-3095H21, W...    50   0.13   1
(AC172839) Bos taurus clone CH240-274E15, WORKING DRAFT SEQU...    50   0.13   1
(AZ870237) 2M0182G11R Mouse 10kb plasmid UUGC1M library Mus ...    50   0.13   1
(AQ826761) HS_5495_B2_B01_T7A RPCI-11 Human Male BAC Library...    50   0.13   1
(EJ060112) 1095456058923 Global-Ocean-Sampling_GS-26-01-01-1...    50   0.13   1
(DH503426) Monosiga ovata DNA, fosmid clone: MOF-073D10, gen...    50   0.13   1
(DH464435) Monosiga ovata DNA, fosmid clone: MOF-005B13, gen...    50   0.13   1
(CR165209) Forward strand read from insert in 5'HPRT inserti...    50   0.13   1
(CR049178) Forward strand read from insert in 5'HPRT inserti...    50   0.13   1
(CN052628) Salamander_12_F16.ab1 AG Ambystoma tigrinum tigri...    50   0.13   1
(BX957303) Zebrafish DNA sequence from clone DKEYP-116B6 in ...    40   0.13   6
(AC105373) Felis catus clone RP86-126J16, WORKING DRAFT SEQU...    46   0.23   2
(BX255276) Human DNA sequence *** SEQUENCING IN PROGRESS ***...    36   0.25   2
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    38   0.25   5
(AC073800) Mus musculus clone RP23-440M10, WORKING DRAFT SEQ...    34   0.28   2
(AC158231) Mus musculus BAC clone RP24-510K1 from chromosome...    34   0.29   2
(AC155806) Mus musculus BAC clone RP24-308M10 from chromosom...    34   0.29   2
(BX548003) Zebrafish DNA sequence from clone DKEY-97I5 in li...    36   0.29   2
(AC180134) Strongylocentrotus purpuratus clone R3-4007C7, WO...    38   0.29   2
(AC092695) Homo sapiens 3 BAC RP11-81E19 (Roswell Park Cance...    46   0.34   5
(AK171455) Mus musculus B6-derived CD11 +ve dendritic cells ...    34   0.35   2
(AK171611) Mus musculus B6-derived CD11 +ve dendritic cells ...    34   0.35   2
(AK166621) Mus musculus 1 cell embryo 1 cell cDNA, RIKEN ful...    34   0.35   2
(BC089317) Mus musculus nucleoporin 62, mRNA (cDNA clone MGC...    34   0.35   2
(AK169178) Mus musculus 17 days embryo kidney cDNA, RIKEN fu...    34   0.35   2
(AK168486) Mus musculus 16 days embryo kidney cDNA, RIKEN fu...    34   0.35   2
(S59342) nuclear pore complex glycoprotein p62 [mice, mRNA, ...    34   0.35   2
(AK168166) Mus musculus TIB-55 BB88 cDNA, RIKEN full-length ...    34   0.35   2
(AK150087) Mus musculus bone marrow macrophage cDNA, RIKEN f...    34   0.35   2
(BC005784) Mus musculus nucleoporin 62, mRNA (cDNA clone MGC...    34   0.35   2
(BC130141) Xenopus laevis hypothetical protein LOC100037082,...    34   0.35   2
(AK149637) Mus musculus bone marrow macrophage cDNA, RIKEN f...    34   0.36   2
(AK147894) Mus musculus melanocyte cDNA, RIKEN full-length e...    34   0.36   2
(AK155059) Mus musculus NOD-derived CD11c +ve dendritic cell...    34   0.36   2
(AY407969) Mus musculus NUP62 gene, VIRTUAL TRANSCRIPT, part...    34   0.36   2
(CB588445) AGENCOURT_12600424 NIH_MGC_136 Mus musculus cDNA ...    34   0.37   2
(DV652472) DS089A_A02 Eppig Hampl Solter fully-grown mouse o...    34   0.37   2
(BQ443178) UI-M-EV0-bxg-g-21-0-UI.r1 NIH_BMAP_EV0 Mus muscul...    34   0.37   2
(BU054559) UI-M-FD0-bzj-l-13-0-UI.r1 NIH_BMAP_FD0 Mus muscul...    34   0.37   2
(CO426008) UI-M-HU0-cqy-o-01-0-UI.r1 NIH_BMAP_HU0 Mus muscul...    34   0.37   2
(CN720595) E0806C04-5 NIA Mouse four-cell-Embryo cDNA librar...    34   0.37   2
(CF895765) A0202B10-5 NIA Mouse Embryonic Germ Cell cDNA Lib...    34   0.37   2
(CF172647) B0910F11-5 NIA Mouse Unfertilized Egg cDNA Librar...    34   0.37   2
(CN718103) E0759A06-5 NIA Mouse four-cell-Embryo cDNA librar...    34   0.37   2
(CZ629447) OM__Ba0170A23.r OM__Ba Oryza minuta genomic clone...    38   0.37   2
(AW227944) up19d01.y1 NCI_CGAP_Mam4 Mus musculus cDNA clone ...    34   0.38   2
(CN724283) E0876F04-5 NIA Mouse four-cell-Embryo cDNA librar...    34   0.38   2
(CN688297) E0256B06-5 NIA Mouse Embryonic Stem (ES) cell (Li...    34   0.38   2
(CA556167) K0208B06-5N NIA Mouse Unfertilized Egg cDNA Libra...    34   0.38   2
(AA822530) vw13g09.r1 Soares_thymus_2NbMT Mus musculus cDNA ...    34   0.38   2
(AV508582) Mus musculus cDNA, Abe mouse ES cell cDNA library...    34   0.38   2
(CA566162) K0346H09-5N NIA Mouse Osteoblast cDNA Library (Lo...    34   0.38   2
(AV570649) Mus musculus cDNA, Abe mouse ES cell cDNA library...    34   0.38   2
(CN721481) E0823F09-5 NIA Mouse four-cell-Embryo cDNA librar...    34   0.38   2
(AL118104) Mus musculus cDNA clone  528_9C15 5'; expressed s...    34   0.38   2
(BX247884) Zebrafish DNA sequence from clone CH211-174M1 in ...    38   0.44   4
(AC168589) Strongylocentrotus purpuratus clone R3-3065D20, W...    42   0.47   4
(AC187855) Populus trichocarpa clone Pop1-121E8, complete se...    34   0.48   6
(AC096909) Rattus norvegicus 8 BAC CH230-88B13 (Children's H...    48   0.51   1
(AC131498) Lytechinus variegatus clone Lv44D13, *** SEQUENCI...    48   0.51   1
(AC231389) Zea mays chromosome 3 clone CH201-494C11; ZMMBBc0...    48   0.51   1
(AC201131) Strongylocentrotus purpuratus clone R3-14A7, WORK...    48   0.51   1
(AC196962) Zea mays chromosome 3 clone CH201-93F17; ZMMBBc00...    48   0.51   1
(AC181787) Strongylocentrotus purpuratus clone R3-1030C18, W...    48   0.51   1
(AC181604) Strongylocentrotus purpuratus clone R3-1108H16, W...    48   0.51   1
(AC179788) Strongylocentrotus purpuratus clone R3-1015E01, W...    48   0.51   1
(AC179107) Strongylocentrotus purpuratus clone R3-4011E22, W...    48   0.51   1
(AC176183) Strongylocentrotus purpuratus clone R3-3066M10, W...    48   0.51   1
(AC168768) Strongylocentrotus purpuratus clone R3-19H22, WOR...    48   0.51   1
(AC165770) Bos taurus clone CH240-159P18, WORKING DRAFT SEQU...    48   0.51   1
(FH212517) CHO_OF3368xe19f1.ab1 CHO_OF3 Nicotiana tabacum ge...    48   0.51   1
(EL431818) CHCS6265.b1_B07.ab1 CHC(LMS) Texas blueweed Helia...    48   0.51   1
(EC741122) NUE00006860 Capsaspora owczarzaki Amplicon expres...    48   0.51   1
(CV847066) ID0AEE1DC12RM1 ID0AEE Acyrthosiphon pisum cDNA cl...    48   0.51   1
(FG302221) MPOA529TF B. bovis infected B. microplus Ovary 40...    48   0.51   1
(FE746659) CAYC3858.b1 CAYC Petrolisthes cinctipes heart, ne...    48   0.51   1
(EY361758) CAWZ7895.rev CAWZ Helobdella robusta Primary Late...    48   0.51   1
(EY350502) CAWZ1763.rev CAWZ Helobdella robusta Primary Late...    48   0.51   1
(AC212806) Populus trichocarpa clone POP035-D11, complete se...    34   0.53   6
(CR391995) Zebrafish DNA sequence from clone CH211-229I10.         36   0.55   5
(CU570704) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   0.60   4
(GC558085) Sequence 1796 from patent US 7416862.                   36   0.68   2
(EA073694) Sequence 1052 from patent US 7183083.                   36   0.68   2
(AR887391) Sequence 1052 from patent US 7060458.                   36   0.68   2
(AC180067) Strongylocentrotus purpuratus clone R3-3029P03, W...    38   0.97   7
(CR381577) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    34   1.1    2
(BX005347) Zebrafish DNA sequence from clone DKEY-199K9 in l...    34   1.1    2
(AC177073) Strongylocentrotus purpuratus clone R3-4004K17, W...    34   1.1    2
(AC180681) Strongylocentrotus purpuratus clone R3-3087P23, W...    34   1.1    2
(BM612767) 17000687137058 A.Gam.ad.cDNA.blood1 Anopheles gam...    44   1.1    2
(AC018710) Homo sapiens BAC clone RP11-296L20 from 4, comple...    42   1.2    6
(AX145068) Sequence 3790 from Patent WO0134809.                    36   1.2    2
(AR485704) Sequence 3790 from patent US 6703492.                   36   1.2    2
(AF269750) Staphylococcus epidermidis strain SR1 clone step....    36   1.2    2
(AC201654) Strongylocentrotus purpuratus clone R3-1016L1, WO...    42   1.3    4
(EY364540) CAWZ9511.fwd CAWZ Helobdella robusta Primary Late...    44   1.3    2
(EY349961) CAWZ17339.fwd CAWZ Helobdella robusta Primary Lat...    44   1.4    2
(EY310401) CAWX22126.fwd CAWX Helobdella robusta Primary Ear...    32   1.4    2
(CE312929) tigr-gss-dog-17000360894998 Dog Library Canis lup...    34   1.4    2
(EJ338542) 1092963498076 Global-Ocean-Sampling_GS-28-01-01-1...    32   1.4    2
(EJ468718) 1095403396723 Global-Ocean-Sampling_GS-28-01-01-1...    36   1.4    2
(BG085721) H3116G01-5 NIA Mouse 15K cDNA Clone Set Mus muscu...    32   1.4    2
(AC161594) Mus musculus BAC clone RP24-153G11 from chromosom...    46   1.5    4
(AC110953) Rattus norvegicus clone CH230-64G3, *** SEQUENCIN...    42   1.7    3
(CR376789) Zebrafish DNA sequence from clone DKEYP-87A2 in l...    38   1.7    4
(AC008351) Drosophila melanogaster, chromosome 2R, region 59...    42   1.7    4
(AL844865) Mouse DNA sequence from clone RP23-350L23 on chro...    46   2.0    1
(AL772335) Mouse DNA sequence from clone RP23-415F19 on chro...    46   2.0    1
(AL604023) Mouse DNA sequence from clone RP23-468D17 on chro...    46   2.0    1
(AC163352) Mus musculus BAC clone RP23-98P11 from chromosome...    46   2.0    1
(AC155287) Mus musculus 6 BAC RP23-103G18 (Roswell Park Canc...    46   2.0    1
(AC141482) Mus musculus BAC clone RP23-159C3 from 16, comple...    46   2.0    1
(AC135861) Mus musculus BAC clone RP23-179J18 from 6, comple...    46   2.0    1
(AC122851) Mus musculus BAC clone RP23-171C17 from chromosom...    46   2.0    1
(AC122032) Mus musculus BAC clone RP24-402M18 from chromosom...    46   2.0    1
(AC121925) Mus musculus BAC clone RP24-201D17 from 6, comple...    46   2.0    1
(AC109298) Mus musculus chromosome 3, clone RP24-271A4, comp...    46   2.0    1
(AC108550) Rattus norvegicus  BAC CH230-194A5 () complete se...    46   2.0    1
(FM992691) Candida dubliniensis CD36 chromosome 4, complete ...    46   2.0    1
(AY886518) Nicotiana bonariensis 120 kDa pistil extensin-lik...    46   2.0    1
(AY886516) Nicotiana langsdorfii 120 kDa pistil extensin-lik...    46   2.0    1
(AY886514) Nicotiana langsdorfii 120 kDa pistil extensin-lik...    46   2.0    1
(AY886513) Nicotiana longiflora 120 kDa pistil extensin-like...    46   2.0    1
(AY886512) Nicotiana plumbaginifolia 120 kDa pistil extensin...    46   2.0    1
(AP010372) Lotus japonicus genomic DNA, chromosome 1, clone:...    46   2.0    1
(AM920436) Penicillium chrysogenum Wisconsin 54-1255 complet...    46   2.0    1
(AC216684) Populus trichocarpa clone POP030-A02, complete se...    46   2.0    1
(AC122162) Medicago truncatula clone mth2-16g15, complete se...    46   2.0    1
(GC701253) Sequence 16498 from patent US 6812339.                  46   2.0    1
(AY392443) Dictyostelium discoideum possible endotoxin gene,...    46   2.0    1
(AP000430) Homo sapiens genomic DNA, chromosome 8q23, clone:...    46   2.0    1
(AM080774) Homo sapiens partial IGHV3-23*01 gene for immunog...    46   2.0    1
(AC108221) Homo sapiens BAC clone RP11-783P19 from 4, comple...    46   2.0    1
(AC092378) Homo sapiens chromosome 16 clone RP11-700H13, com...    46   2.0    1
(AC084035) Homo sapiens 3 BAC RP11-153F10 (Roswell Park Canc...    46   2.0    1
(AC027031) Homo sapiens chromosome 8, clone RP11-778D12, com...    46   2.0    1
(AC012323) Homo sapiens chromosome 16 clone RP11-89O14, comp...    46   2.0    1
(AC005674) Homo sapiens chromosome 4 clone RP11-448G15, comp...    46   2.0    1
(AC162882) Mus musculus chromosome 3 clone RP24-231M24 map 3...    46   2.0    1
(AC160755) Bos taurus clone CH240-91O18, WORKING DRAFT SEQUE...    46   2.0    1
(AC153454) Bos taurus clone CH240-16P9, WORKING DRAFT SEQUEN...    46   2.0    1
(AC146997) Arbacia punctulata clone BAP-144G2, WORKING DRAFT...    46   2.0    1
(AC142061) Rattus norvegicus clone CH230-159E19, *** SEQUENC...    46   2.0    1
(AC131204) Rattus norvegicus clone CH230-258P17, WORKING DRA...    46   2.0    1
(AC128577) Rattus norvegicus clone CH230-138H23, WORKING DRA...    46   2.0    1
(AC127812) Rattus norvegicus clone CH230-249C1, WORKING DRAF...    46   2.0    1
(AC127438) Rattus norvegicus clone CH230-323K4, *** SEQUENCI...    46   2.0    1
(AC120010) Mus musculus chromosome 6 clone RP24-201I11 map 6...    46   2.0    1
(AC114255) Rattus norvegicus clone CH230-240I15, *** SEQUENC...    46   2.0    1
(AC113916) Rattus norvegicus clone CH230-47C11, *** SEQUENCI...    46   2.0    1
(AC112380) Rattus norvegicus clone CH230-24L19, *** SEQUENCI...    46   2.0    1
(AC110129) Rattus norvegicus clone CH230-272G15, *** SEQUENC...    46   2.0    1
(AC107329) Rattus norvegicus clone CH230-173A24, WORKING DRA...    46   2.0    1
(AC107254) Rattus norvegicus clone CH230-74B18, *** SEQUENCI...    46   2.0    1
(AC106619) Rattus norvegicus clone CH230-221E15, *** SEQUENC...    46   2.0    1
(AC098898) Rattus norvegicus clone CH230-37I16, WORKING DRAF...    46   2.0    1
(AC097431) Rattus norvegicus clone CH230-208M7, WORKING DRAF...    46   2.0    1
(AC090803) Homo sapiens chromosome 8 clone RP11-783P19 map 8...    46   2.0    1
(AP009981) Lotus japonicus genomic DNA, clone: LjT28H23, TM0...    46   2.0    1
(AC217476) Neofelis nebulosa clone CH87-249A18, WORKING DRAF...    46   2.0    1
(AC201579) Strongylocentrotus purpuratus clone R3-4011G18, W...    46   2.0    1
(AC201033) Strongylocentrotus purpuratus clone R3-12K10, WOR...    46   2.0    1
(AC197066) Zea mays chromosome 9 clone CH201-47F2; ZMMBBc004...    46   2.0    1
(AC190078) Nomascus leucogenys leucogenys clone CH271-218I23...    46   2.0    1
(AC189694) Zea mays chromosome 4 clone CH201-292J3; ZMMBBc02...    46   2.0    1
(AC189389) Brassica rapa subsp. pekinensis clone KBrB053J19,...    46   2.0    1
(AC189236) Brassica rapa subsp. pekinensis clone KBrB014N06,...    46   2.0    1
(AC188971) Zea mays chromosome 9 clone CH201-267C9; ZMMBBc02...    46   2.0    1
(AC184394) Strongylocentrotus purpuratus clone R3-3101M23, W...    46   2.0    1
(AC184390) Strongylocentrotus purpuratus clone R3-3095O13, W...    46   2.0    1
(AC184179) Strongylocentrotus purpuratus clone R3-6C4, WORKI...    46   2.0    1
(AC182861) Bos taurus clone CH240-516N10, WORKING DRAFT SEQU...    46   2.0    1
(AC181347) Strongylocentrotus purpuratus clone R3-41M2, WORK...    46   2.0    1
(AC180891) Strongylocentrotus purpuratus clone R3-3066P1, WO...    46   2.0    1
(AC180028) Strongylocentrotus purpuratus clone R3-3030P24, W...    46   2.0    1
(AC179554) Strongylocentrotus purpuratus clone R3-1032E19, W...    46   2.0    1
(AC179452) Strongylocentrotus purpuratus clone R3-63F4, WORK...    46   2.0    1
(AC179161) Strongylocentrotus purpuratus clone R3-1107I23, W...    46   2.0    1
(AC178738) Strongylocentrotus purpuratus clone R3-13L11, WOR...    46   2.0    1
(AC177771) Strongylocentrotus purpuratus clone R3-1003A8, WO...    46   2.0    1
(AC177363) Strongylocentrotus purpuratus clone R3-1032D8, WO...    46   2.0    1
(AC175930) Strongylocentrotus purpuratus clone R3-15O19, WOR...    46   2.0    1
(AC172845) Bos taurus clone CH240-267H12, WORKING DRAFT SEQU...    46   2.0    1
(AC168943) Bos taurus clone CH240-208N22, WORKING DRAFT SEQU...    46   2.0    1
(AC021100) Homo sapiens chromosome 3 clone RP11-81E19, WORKI...    46   2.0    1
(BH550726) BOGPM96TF BOGP Brassica oleracea genomic clone BO...    46   2.0    1
(BH543001) BOGKJ79TF BOGK Brassica oleracea genomic clone BO...    46   2.0    1
(BH531071) BOGZC96TF BOGZ Brassica oleracea genomic clone BO...    46   2.0    1
(BH507658) BOHKI71TF BOHK Brassica oleracea genomic clone BO...    46   2.0    1
(BH435733) BOGBX59TF BOGB Brassica oleracea genomic clone BO...    46   2.0    1
(DX065975) KBrB073O19R KBrB, Brassica rapa BamHI BAC library...    46   2.0    1
(DU670570) Bst003112 lambda03 Boechera stricta genomic clone...    46   2.0    1
(DH819687) Rattus norvegicus DNA, BAC clone: RNB1-423B15, 5'...    46   2.0    1
(DH654713) Rattus norvegicus DNA, BAC clone: RNB1-198P13, 3'...    46   2.0    1
(DH477779) Monosiga ovata DNA, fosmid clone: MOF-028J10, gen...    46   2.0    1
(DE229806) Trifolium pratense DNA, clone:RCG23025.                 46   2.0    1
(DE217878) Trifolium pratense DNA, clone:RCG08510.                 46   2.0    1
(DE217506) Trifolium pratense DNA, clone:RCG07989.                 46   2.0    1
(BZ483830) BONLJ88TR BO_1.6_2_KB_tot Brassica oleracea genom...    46   2.0    1
(BZ079343) llg32c04.b1 B.oleracea002 Brassica oleracea genom...    46   2.0    1
(BH972910) odj33g01.g1 B.oleracea002 Brassica oleracea genom...    46   2.0    1
(EL934544) Centeaurea_plate-011_C15.trimmed.seq Centaurea no...    46   2.0    1
(EH418242) OL323R Brassica oleracea var. alboglabra leaf cDN...    46   2.0    1
(EH418079) OL323F Brassica oleracea var. alboglabra leaf cDN...    46   2.0    1
(EE424220) 31ETGS12_UP_009_D10_03FEB2005_074 Brassica napus ...    46   2.0    1
(EB335446) CNSN01-F-142630-501 Normalized CNS library (juven...    46   2.0    1
(DY307487) Cm_mx1_60b04_SP6 Green Shore Crab Multiple Tissue...    46   2.0    1
(DY307366) Cm_mx1_58g07_SP6 Green Shore Crab Multiple Tissue...    46   2.0    1
(DT764531) EST1198380 Aquilegia cDNA library Aquilegia formo...    46   2.0    1
(DT759443) EST1193292 Aquilegia cDNA library Aquilegia formo...    46   2.0    1
(DT748051) EST1181900 Aquilegia cDNA library Aquilegia formo...    46   2.0    1
(DT748050) EST1181899 Aquilegia cDNA library Aquilegia formo...    46   2.0    1
(DT747165) EST1181014 Aquilegia cDNA library Aquilegia formo...    46   2.0    1
(DT747164) EST1181013 Aquilegia cDNA library Aquilegia formo...    46   2.0    1
(DT741147) EST1174996 Aquilegia cDNA library Aquilegia formo...    46   2.0    1
(DT285646) JGI_CAAV12258.fwd CAAV Pimephales promelas testis...    46   2.0    1
(DR975147) Skin-04_A12_pDNR-LIB-SFI1A A. transmontanus skin ...    46   2.0    1
(DR943649) EST1135188 Aquilegia cDNA library Aquilegia formo...    46   2.0    1
(DR943648) EST1135187 Aquilegia cDNA library Aquilegia formo...    46   2.0    1
(DR940933) EST1132472 Aquilegia cDNA library Aquilegia formo...    46   2.0    1
(DR940932) EST1132471 Aquilegia cDNA library Aquilegia formo...    46   2.0    1
(DR926709) EST1118248 Aquilegia cDNA library Aquilegia formo...    46   2.0    1
(DR926708) EST1118247 Aquilegia cDNA library Aquilegia formo...    46   2.0    1
(DR914637) EST1106176 Aquilegia cDNA library Aquilegia formo...    46   2.0    1
(DC493279) Monosiga ovata cDNA, clone: MOC-062L10, 5'end.          46   2.0    1
(AJ797836) Antirrhinum majus EST, clone 018_4_03_d14.              46   2.0    1
(AJ753471) Gerbera hybrid cv. 'Terra Regina' EST, clone G000...    46   2.0    1
(CD839184) RFO2.114F03F010529 RFO2 Brassica napus cDNA clone...    46   2.0    1
(CD823510) BN25.049A05F020118 BN25 Brassica napus cDNA clone...    46   2.0    1
(CD733051) 4044635 1GAL - Chicken Intestinal Lymphocyte Gall...    46   2.0    1
(C25565) Dictyostelium discoideum slug cDNA, clone SLA429.         46   2.0    1
(BJ378467) Dictyostelium discoideum cDNA clone:ddc31f05, 3' ...    46   2.0    1
(FK848976) K06061E09 Karenia brevis Multi-strain Library Kar...    46   2.0    1
(FG314952) gmnl2pia_0008d21.pDNRF2 Gadus morhua blood librar...    46   2.0    1
(FG312158) gmnl2pia_0004c09.pDNRF2 Gadus morhua blood librar...    46   2.0    1
(FF113034) CJAH-aaa79g06.b2 Caenorhabditis_japonica_CJAH1_ES...    46   2.0    1
(FE744659) CAYC2476.b1 CAYC Petrolisthes cinctipes heart, ne...    46   2.0    1
(FE511380) CAOU7379.fwd CAOU Selaginella moellendorffii mixe...    46   2.0    1
(FE511379) CAOU7379.rev CAOU Selaginella moellendorffii mixe...    46   2.0    1
(FE509866) CAOU16133.fwd CAOU Selaginella moellendorffii mix...    46   2.0    1
(FE509865) CAOU16133.rev CAOU Selaginella moellendorffii mix...    46   2.0    1
(FE505948) CAOU13679.fwd CAOU Selaginella moellendorffii mix...    46   2.0    1
(FE505947) CAOU13679.rev CAOU Selaginella moellendorffii mix...    46   2.0    1
(FE497523) CAOT8478.fwd CAOT Selaginella moellendorffii mixe...    46   2.0    1
(FE497522) CAOT8478.rev CAOT Selaginella moellendorffii mixe...    46   2.0    1
(FE485228) CAOT10436.fwd CAOT Selaginella moellendorffii mix...    46   2.0    1
(FE485227) CAOT10436.rev CAOT Selaginella moellendorffii mix...    46   2.0    1
(FE463650) CAOS22840.rev CAOS Selaginella moellendorffii mix...    46   2.0    1
(FD921420) CBOX3027.rev CBOX Volvox carteri f. nagariensis i...    46   2.0    1
(FD531141) RR1FJ05JQ RR1(CS) Raphanus raphanistrum subsp. ma...    46   2.0    1
(FD353050) CBPN31553.g1 CBPN: Subtracted channel catfish cDN...    46   2.0    1
(FD336764) CBPN19536.g1 CBPN: Subtracted channel catfish cDN...    46   2.0    1
(EY905827) RR2DC91TF RR2(MS) Raphanus raphanistrum subsp. ra...    46   2.0    1
(EY902171) RR2DC91JQ RR2(MS) Raphanus raphanistrum subsp. ra...    46   2.0    1
(EY337281) CAWY8222.fwd CAWY Helobdella robusta Subtracted E...    46   2.0    1
(EX897001) RS2CP28TF RS2(RS) Raphanus sativus cDNA 5', mRNA ...    46   2.0    1
(EX868488) AUAO2996.rev AUAO Karenia brevis Karbr Dark-phase...    46   2.0    1
(EV549268) RR3AJ24TF RR3(NY) Raphanus raphanistrum subsp. ra...    46   2.0    1
(EV544778) RR3AJ24JQ RR3(NY) Raphanus raphanistrum subsp. ra...    46   2.0    1
(EV133226) 0167623 Brassica napus Flower Brassica napus cDNA...    46   2.0    1
(EV060946) BNSCS3CT_UP_303_C08_01JUN2007_060 Brassica napus ...    46   2.0    1
(ES966644) BNZB_UP_174_G11_12MAR2006_083 Brassica napus BNZB...    46   2.0    1
(ES962599) 9RDBNGA_UP_232_G02_06NOV2006_004 Brassica napus 9...    46   2.0    1
(ES910627) BNARO6GH_T3_021_A09_08DEC2006_079 Brassica napus ...    46   2.0    1
(ES906346) BNARO5GH_T3_012_F09_30NOV2006_069 Brassica napus ...    46   2.0    1
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    34   2.0    10
(BH094533) RPCI-24-357H22.TV RPCI-24 Mus musculus genomic cl...    42   2.8    2
(AC121343) Homo sapiens X BAC RP11-438J7 (Roswell Park Cance...    40   2.8    3
(AC177461) Strongylocentrotus purpuratus clone R3-60B23, WOR...    40   2.8    2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    34   2.9    9
(CU928527) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   3.0    5
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ...    38   3.1    6
(AC018624) Homo sapiens chromosome 5 clone RP11-556N24 map 5...    44   3.6    4
(DC467267) Monosiga ovata cDNA, clone: MOC-025B12, 5'end.          44   3.7    2
(AC068495) Mus musculus strain C57BL6/J clone RP23-441G1, WO...    40   3.7    2
(AC084581) Caenorhabditis briggsae cosmid G40L08, complete s...    44   3.7    3
(AC178981) Strongylocentrotus purpuratus clone R3-3122G2, WO...    38   3.8    5
(AL772319) Mouse DNA sequence from clone RP23-397E2 on chrom...    32   3.8    2
(AL935324) Zebrafish DNA sequence from clone CH211-197B6 in ...    32   3.8    2
(EY336249) CAWY7569.fwd CAWY Helobdella robusta Subtracted E...    34   4.0    2
(CR392012) Zebrafish DNA sequence from clone CH211-253D24 in...    32   4.0    2
(GN009090) Sequence 1531 from Patent EP2014669.                    44   4.0    2
(BV062371) S212P60434FD7.T0 CZECHII/Ei Mus musculus STS geno...    42   4.1    2
(CT025652) Mouse DNA sequence from clone RP24-68J3 on chromo...    40   4.2    2
(EC168582) MNE00004912 Monosiga ovata Non-normalized Monosig...    44   4.3    2
(AB102778) Dictyostelium discoideum kin5 mRNA for kinesin-re...    44   4.4    2
(AC114197) Rattus norvegicus clone CH230-213I14, *** SEQUENC...    44   4.4    3
(AC137517) Homo sapiens 3 BAC RP11-671N3 (Roswell Park Cance...    44   4.6    3
(AC128518) Rattus norvegicus clone CH230-217M24, *** SEQUENC...    38   4.7    3
(AC106186) Rattus norvegicus clone CH230-137D14, WORKING DRA...    38   5.0    3
(AC116231) Rattus norvegicus clone CH230-304F22, *** SEQUENC...    44   5.0    3
(CD792251) EST663612 RAB Rhipicephalus appendiculatus cDNA c...    34   5.1    2
(AL117353) Human DNA sequence from clone RP5-944F13 on chrom...    38   5.2    4
(DH463453) Monosiga ovata DNA, fosmid clone: MOF-003H03, gen...    34   5.2    2
(BZ054998) jnr31f12.b1 B.oleracea001 Brassica oleracea genom...    34   5.2    2
(BH924605) odi55d08.g1 B.oleracea002 Brassica oleracea genom...    34   5.2    2
(AC201157) Strongylocentrotus purpuratus clone R3-14G14, WOR...    44   5.2    2
(EK239313) 1095460215370 Global-Ocean-Sampling_GS-31-01-01-1...    36   5.3    2
(FH493870) CHO_OF4610xa08r1.ab1 CHO_OF4 Nicotiana tabacum ge...    36   5.3    2
(FH494024) CHO_OF4610xb07r1.ab1 CHO_OF4 Nicotiana tabacum ge...    36   5.4    2
(AX356423) Sequence 57 from Patent WO0181622.                      42   5.5    3
(AC102121) Mus musculus chromosome 7, clone RP23-181P23, com...    42   5.8    4
(AM453413) Vitis vinifera contig VV78X092502.11, whole genom...    42   6.1    3
(CR318649) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   6.2    4
(AM684658) Entamoeba terrapinae GSS, clone terra003f09.q1k.        34   6.5    2
(BX842599) Neurospora crassa DNA linkage group II BAC clone ...    44   6.6    2
(AC118593) Mus musculus chromosome 19, clone RP24-464I2, com...    44   6.6    4
(AC097374) Homo sapiens BAC clone RP11-71B7 from 2, complete...    40   6.7    4
(BX897664) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   6.8    3
(AC217421) Zea mays chromosome 2 clone ZMMBBb-571P21; ZMMBBb...    44   6.9    4
(AC170927) Bos taurus clone CH240-181P12, WORKING DRAFT SEQU...    40   7.1    7
(CU855571) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   7.1    4
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975...    38   7.6    4
(AP003663) Mus musculus genomic DNA, chromosome 16q clone:RP...    44   7.9    3
(CT573065) Zebrafish DNA sequence from clone CH211-156M19 in...    44   7.9    1
(CR847533) Zebrafish DNA sequence from clone DKEY-15G24 in l...    44   7.9    1
(CR752649) Zebrafish DNA sequence from clone DKEY-238J13.          44   7.9    1
(CR376850) Zebrafish DNA sequence from clone DKEY-246K9 in l...    44   7.9    1
(BX855621) Zebrafish DNA sequence from clone CH211-225C13.         44   7.9    1
(BX470221) Zebrafish DNA sequence from clone CH211-86K6 in l...    44   7.9    1
(BX005237) Zebrafish DNA sequence from clone DKEY-72G15 in l...    44   7.9    1
(BX004774) Zebrafish DNA sequence from clone CH211-133L5 in ...    44   7.9    1
(AJ411638) Canis familiaris STS REN288F11.                         44   7.9    1
(CU406968) Mouse DNA sequence from clone CH29-493D13 on chro...    44   7.9    1
(CU207334) Mouse DNA sequence from clone CH29-607J18 on chro...    44   7.9    1
(CT025683) Mouse DNA sequence from clone RP23-456K21 on chro...    44   7.9    1
(CT010508) Mouse DNA sequence from clone RP23-250G8 on chrom...    44   7.9    1
(BX649413) Mouse DNA sequence from clone RP23-193P21 on chro...    44   7.9    1
(AL954662) Mouse DNA sequence from clone RP23-348L16 on chro...    44   7.9    1
(AL928612) Mouse DNA sequence from clone RP23-454J14 on chro...    44   7.9    1
(AL845471) Mouse DNA sequence from clone RP23-320N1 on chrom...    44   7.9    1
(AL837510) Mouse DNA sequence from clone RP23-200B23 on chro...    44   7.9    1
(AL808025) Mouse DNA sequence from clone RP23-45M22 on chrom...    44   7.9    1
(AL669920) Mouse DNA sequence from clone RP23-263C23 on chro...    44   7.9    1
(AL669901) Mouse DNA sequence from clone RP23-35N5 on chromo...    44   7.9    1
(AL663042) Mouse DNA sequence from clone RP23-400P12 on chro...    44   7.9    1
(AL645902) Mouse DNA sequence from clone RP23-19I2 on chromo...    44   7.9    1
(AL591478) Mouse DNA sequence from clone RP23-140D14 on chro...    44   7.9    1
(AF463727) Mus musculus strain C57BL/6J cytokine gene cluste...    44   7.9    1
(AF348402) Mus musculus PV1 protein (Plvap) gene, complete cds.    44   7.9    1
(AE014178) Mus musculus piebald deletion region section 6 of...    44   7.9    1
(AC166101) Mus musculus BAC clone RP23-385P23 from chromosom...    44   7.9    1
(AC162802) Mus musculus BAC clone RP23-363M4 from chromosome...    44   7.9    1
(AC162284) Mus musculus chromosome 8, clone RP23-256C11, com...    44   7.9    1
(AC161260) Mus musculus BAC clone RP23-448A11 from chromosom...    44   7.9    1
(AC160934) Mus musculus BAC clone RP23-435H22 from chromosom...    44   7.9    1
(AC160547) Mus musculus chromosome 8, clone RP23-240F23, com...    44   7.9    1
(AC158681) Mus musculus 6 BAC RP23-338E5 (Roswell Park Cance...    44   7.9    1
(AC157938) Mus musculus chromosome 5, clone RP23-307P18, com...    44   7.9    1
(AC154731) Mus musculus BAC clone RP23-121M22 from chromosom...    44   7.9    1
(AC154542) Mus musculus BAC clone RP23-458O22 from chromosom...    44   7.9    1
(AC153868) Mus musculus BAC RP23-384D16 (Roswell Park Cancer...    44   7.9    1
(AC153833) Mus musculus 6 BAC RP23-308F24 (Roswell Park Canc...    44   7.9    1
(AC153578) Mus musculus 6 BAC RP23-218P2 (Roswell Park Cance...    44   7.9    1
(AC152960) Mus musculus 6 BAC RP23-38B21 (Roswell Park Cance...    44   7.9    1
(AC149220) Mus musculus BAC clone RP23-412J12 from 7, comple...    44   7.9    1
(AC147233) Mus musculus BAC clone RP23-350J18 from chromosom...    44   7.9    1
(AC134591) Mus musculus BAC clone RP23-376L4 from chromosome...    44   7.9    1
(AC132844) Mus musculus chromosome 17, clone RP24-481P13, co...    44   7.9    1
(AC132412) Mus musculus BAC clone RP23-355N5 from chromosome...    44   7.9    1
(AC132336) Mus musculus BAC clone RP24-230N9 from chromosome...    44   7.9    1
(AC132118) Mus musculus BAC clone RP23-467C14 from chromosom...    44   7.9    1
(AC131738) Mus musculus BAC clone RP23-94E15 from 16, comple...    44   7.9    1
(AC130542) Mus musculus chromosome 6 clone RP24-167F4, compl...    44   7.9    1
(AC130283) Mus musculus chromosome 15, clone RP23-136E18, co...    44   7.9    1
(AC129222) Mus musculus BAC clone RP24-532L14 from 14, compl...    44   7.9    1
(AC129212) Mus musculus BAC clone RP24-373G21 from chromosom...    44   7.9    1
(AC127418) Mus musculus BAC clone RP24-66J10 from chromosome...    44   7.9    1
(AC127416) Mus musculus BAC clone RP23-457J22 from chromosom...    44   7.9    1
(AC127335) Mus musculus BAC clone RP23-150G24 from 8, comple...    44   7.9    1
(AC126429) Mus musculus BAC clone RP24-403O23 from chromosom...    44   7.9    1
(AC126276) Mus musculus BAC clone RP23-113J19 from 10, compl...    44   7.9    1
(AC124776) Mus musculus BAC clone RP23-89D11 from 12, comple...    44   7.9    1
(AC116507) Mus musculus chromosome 19, clone RP24-309C17, co...    44   7.9    1
(AC115021) Mus musculus chromosome 3, clone RP24-232N19, com...    44   7.9    1
(AC114916) Mus musculus BAC clone RP23-68E10 from 15, comple...    44   7.9    1
(AC112701) Mus musculus BAC clone RP23-171A11 from 13, compl...    44   7.9    1
(AC112342) Rattus norvegicus 14 BAC CH230-253H12 (Children's...    44   7.9    1
(AC111069) Mus musculus chromosome 18, clone RP24-164O22, co...    44   7.9    1
(AC105164) Mus musculus chromosome 6, clone RP24-296I7, comp...    44   7.9    1
(AC101659) Mus musculus chromosome 7, clone RP23-202M11, com...    44   7.9    1
(AC099736) Mus musculus chromosome 15, clone RP23-228F5, com...    44   7.9    1
(AC099609) Mus musculus chromosome 7, clone RP23-376D24, com...    44   7.9    1
(AC096035) Rattus norvegicus 4 BAC CH230-16M16 (Children's H...    44   7.9    1
(AB015749) Rattus norvegicus gene for testicular cell adhesi...    44   7.9    1
(AC201631) Rhesus Macaque  BAC CH250-242H22 () complete sequ...    44   7.9    1
(FM992695) Candida dubliniensis CD36 chromosome R, complete ...    44   7.9    1
(FM992694) Candida dubliniensis CD36 chromosome 7, complete ...    44   7.9    1
(FM992692) Candida dubliniensis CD36 chromosome 5, complete ...    44   7.9    1
(EU971939) Zea mays clone 372588 mRNA sequence.                    44   7.9    1
(EU434725) Eutypa lata microsatellite C02 sequence.                44   7.9    1
(DQ653140) Arabidopsis thaliana clone 0000020420_0000014226 ...    44   7.9    1
(CU638744) Podospora anserina genomic DNA chromosome 6, supe...    44   7.9    1
(CU633895) Podospora anserina genomic DNA chromosome 4, supe...    44   7.9    1
(BT017703) Zea mays clone EL01N0445G07.c mRNA sequence.            44   7.9    1
(AP007163) Aspergillus oryzae RIB40 genomic DNA, SC166.            44   7.9    1
(AP006500) Cyanidioschyzon merolae DNA, chromosome 18, compl...    44   7.9    1
(AM455177) Vitis vinifera, whole genome shotgun sequence, co...    44   7.9    1
(AL356815) Neurospora crassa DNA linkage group II BAC clone ...    44   7.9    1
(AL132978) Arabidopsis thaliana DNA chromosome 3, BAC clone ...    44   7.9    1
(AK110431) Oryza sativa Japonica Group cDNA clone:002-166-B0...    44   7.9    1
(EA740546) Sequence 11992 from patent US 7368527.                  44   7.9    1
(EA115451) Sequence 88 from patent US 7205106.                     44   7.9    1
(EA099869) Sequence 1497 from patent US 7193069.                   44   7.9    1
(DL228621) Novel full length cDNA.                                 44   7.9    1
(DL178573) Novel full length cDNA.                                 44   7.9    1
(DI133367) Higher molecular weight entities and uses therefor.     44   7.9    1
(DI126908) Higher molecular weight entities and uses therefor.     44   7.9    1
(DI124230) Higher molecular weight entities and uses therefor.     44   7.9    1
(DD248358) USE OF TRANSTHYRETIN PEPTIDE/PROTEIN FUSIONS TO I...    44   7.9    1
(DD246853) SELF-COALESCING OR SELF-AGGREGATING CHIMERIC PROT...    44   7.9    1
(DD246847) SELF-COALESCING OR SELF-AGGREGATING CHIMERIC PROT...    44   7.9    1
(DD246845) SELF-COALESCING OR SELF-AGGREGATING CHIMERIC PROT...    44   7.9    1
(DD047193) DETECTION OF SUSCEPTIBILITY TO AUTOIMMUNE DISEASES.     44   7.9    1
(CS789949) Sequence 1205 from Patent WO2005031001.                 44   7.9    1
(CS789047) Sequence 303 from Patent WO2005031001.                  44   7.9    1
(CS168252) Sequence 1497 from Patent EP1580263.                    44   7.9    1
(CQ796115) Sequence 88 from Patent EP1405921.                      44   7.9    1
(CQ597296) Sequence 25054 from Patent WO0171042.                   44   7.9    1
(CQ341185) Sequence 15279 from Patent WO0157275.                   44   7.9    1
(CQ328471) Sequence 2565 from Patent WO0157275.                    44   7.9    1
(CQ303869) Sequence 14974 from Patent WO0186003.                   44   7.9    1
(CQ291368) Sequence 2473 from Patent WO0186003.                    44   7.9    1
(CQ266896) Sequence 15157 from Patent WO0157277.                   44   7.9    1
(CQ254334) Sequence 2595 from Patent WO0157277.                    44   7.9    1
(CQ228754) Sequence 15593 from Patent WO0157273.                   44   7.9    1
(CQ215756) Sequence 2595 from Patent WO0157273.                    44   7.9    1
(CQ205355) Sequence 7632 from Patent WO0157271.                    44   7.9    1
(CQ200252) Sequence 2529 from Patent WO0157271.                    44   7.9    1
(CQ180991) Sequence 12387 from Patent WO0157274.                   44   7.9    1
(CQ171117) Sequence 2513 from Patent WO0157274.                    44   7.9    1
(CQ145546) Sequence 15568 from Patent WO0157276.                   44   7.9    1
(CQ132545) Sequence 2567 from Patent WO0157276.                    44   7.9    1
(CQ106891) Sequence 15750 from Patent WO0157272.                   44   7.9    1
(CQ093768) Sequence 2627 from Patent WO0157272.                    44   7.9    1
(CQ075914) Sequence 11714 from Patent WO0157278.                   44   7.9    1
(CQ066726) Sequence 2526 from Patent WO0157278.                    44   7.9    1
(CQ056637) Sequence 7457 from Patent WO0157270.                    44   7.9    1
(CQ051669) Sequence 2489 from Patent WO0157270.                    44   7.9    1
(AX834373) Sequence 1497 from Patent EP1347046.                    44   7.9    1
(GC850738) Sequence 165983 from patent US 6812339.                 44   7.9    1
(GC850737) Sequence 165982 from patent US 6812339.                 44   7.9    1
(GC701930) Sequence 17175 from patent US 6812339.                  44   7.9    1
(GC701174) Sequence 16419 from patent US 6812339.                  44   7.9    1
(GC699608) Sequence 14853 from patent US 6812339.                  44   7.9    1
(GC698918) Sequence 14163 from patent US 6812339.                  44   7.9    1
(GC698917) Sequence 14162 from patent US 6812339.                  44   7.9    1
(GC697195) Sequence 12440 from patent US 6812339.                  44   7.9    1

>(C89954) Dictyostelium discoideum slug cDNA, clone SSG688.
          Length = 548

 Score =  876 bits (442), Expect = 0.0
 Identities = 442/442 (100%)
 Strand = Plus / Plus


Query: 227 caactgttgaaagtagaattggtagatatgttgatacagaggaattgtggaaaagacact 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   caactgttgaaagtagaattggtagatatgttgatacagaggaattgtggaaaagacact 60


Query: 287 gtcatataatatcaccagagaaaagacatacattaaaggatgacgaaagttggagagatt 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gtcatataatatcaccagagaaaagacatacattaaaggatgacgaaagttggagagatt 120


Query: 347 tatttacaattttagagagagaatatcaaaataaaaccaagaaaactggtgaagcattaa 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tatttacaattttagagagagaatatcaaaataaaaccaagaaaactggtgaagcattaa 180


Query: 407 gaaagatttataataatgctgcaaataataagaaatcaaaacaaattaaagttttaaacg 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaaagatttataataatgctgcaaataataagaaatcaaaacaaattaaagttttaaacg 240


Query: 467 atgttgtgactccaaccgcttcaaagagatggagtggcacagttagtaaaactccatcct 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atgttgtgactccaaccgcttcaaagagatggagtggcacagttagtaaaactccatcct 300


Query: 527 ataaacaaagcggtagttcttcacctggcaaatatagtaatggtagtccaataagtagaa 586
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ataaacaaagcggtagttcttcacctggcaaatatagtaatggtagtccaataagtagaa 360


Query: 587 gtgaatcaagcagcagtggtagcggtggtggtggtagtggtagttatggtaatgttttta 646
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtgaatcaagcagcagtggtagcggtggtggtggtagtggtagttatggtaatgttttta 420


Query: 647 aaccctctgcttcaaatcaacc 668
           ||||||||||||||||||||||
Sbjct: 421 aaccctctgcttcaaatcaacc 442

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 817,048,486
Number of extensions: 55233057
Number of successful extensions: 5323275
Number of sequences better than 10.0: 867
Length of query: 775
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 751
Effective length of database: 99,340,224,878
Effective search space: 74604508883378
Effective search space used: 74604508883378
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.18
Homology vs Protein 
Query= Contig-U01558-1 (Contig-U01558-1Q) /CSM_Contig/Contig-U01558-1Q.Seq.d
         (775 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A57244(A57244)transcription elongation factor elongin A - rat          40   0.083
AK036592_1(AK036592|pid:none) Mus musculus adult male bone cDNA,...    40   0.083
(Q3SY89) RecName: Full=RNA polymerase II transcription factor SI...    40   0.11
(Q8NG57) RecName: Full=RNA polymerase II transcription factor SI...    40   0.11
BC103912_1(BC103912|pid:none) Homo sapiens transcription elongat...    38   0.41
(Q14241) RecName: Full=Transcription elongation factor B polypep...    38   0.41
AF116729_1(AF116729|pid:none) Homo sapiens MSTP059 mRNA, complet...    38   0.41
AM494951_73(AM494951|pid:none) Leishmania braziliensis chromosom...    36   1.2
CP000817_3420(CP000817|pid:none) Lysinibacillus sphaericus C3-41...    35   2.0
CP000923_2209(CP000923|pid:none) Thermoanaerobacter sp. X514, co...    34   6.0
AL844507_15(AL844507|pid:none) Plasmodium falciparum 3D7 chromos...    34   6.0
CP000924_1556(CP000924|pid:none) Thermoanaerobacter pseudethanol...    34   6.0

>A57244(A57244)transcription elongation factor elongin A - rat
          Length = 773

 Score = 40.0 bits (92), Expect = 0.083
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
 Frame = +1

Query: 259 DTEELWKRHCHIISPEKRHTLKDDESWRDLFTILEREYQNKTKKTGEALRKIYNNAANNK 438
           +T++LWK HCH    E+R   ++ ESWR+++  L+   + + +     +R  +   AN
Sbjct: 601 ETDQLWKVHCHRDFKEERP--EEYESWREMYLRLQDAREQRLRLLTNNIRSAH---ANKP 655

Query: 439 KSKQIKV--LNDVVTPTASKR 495
           K +Q K+  +N V  P    R
Sbjct: 656 KGRQAKMAFVNSVAKPPRDVR 676

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 884,295,482
Number of extensions: 13833179
Number of successful extensions: 38787
Number of sequences better than 10.0: 12
Number of HSP's gapped: 38703
Number of HSP's successfully gapped: 12
Length of query: 258
Length of database: 1,051,180,864
Length adjustment: 126
Effective length of query: 132
Effective length of database: 643,374,430
Effective search space: 84925424760
Effective search space used: 84925424760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.54  gvh: 0.47  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U01558-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0