| Contig-U09287-1 |
| Contig ID |
Contig-U09287-1 |
| Contig update |
2002. 9.13 |
| Contig sequence |
 |
| Gap |
gap included |
| Contig length |
1211 |
| Chromosome number (1..6, M) |
6 |
| Chromosome length |
3595308 |
| Start point |
1053173 |
| End point |
1054375 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
1 |
| Number of EST |
2 |
| Link to clone list |
U09287 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11.15 |
| Homology vs DNA |
|
| protein update |
2009. 6.25 |
| Homology vs Protein |
Query= Contig-U09287-1 (Contig-U09287-1Q) /CSM_Contig/Contig-U09287-1Q.Seq.d
(1221 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q54DT8) RecName: Full=Protoporphyrinogen oxidase; Shor... 394 e-108
CR382134_469(CR382134|pid:none) Debaryomyces hansenii strain CBS... 89 4e-16
FM992688_821(FM992688|pid:none) Candida dubliniensis CD36 chromo... 88 7e-16
CP000029_1335(CP000029|pid:none) Staphylococcus epidermidis RP62... 77 9e-13
AB180840_1(AB180840|pid:none) Danio rerio mRNA for protoporphyri... 76 2e-12
AB029492_1(AB029492|pid:none) Spinacia oleracea SO-POX1 mRNA for... 75 4e-12
AX084750_1(AX084750|pid:none) Sequence 19 from Patent WO0112825.... 75 6e-12
(Q10062) RecName: Full=Protoporphyrinogen oxidase; Shor... 74 8e-12
CP000159_1183(CP000159|pid:none) Salinibacter ruber DSM 13855, c... 74 1e-11
FN392322_50(FN392322|pid:none) Pichia pastoris GS115 chromosome ... 74 1e-11
BC154348_1(BC154348|pid:none) Danio rerio protoporphyrinogen oxi... 72 3e-11
AB020501_1(AB020501|pid:none) Nicotiana tabacum mRNA for plastid... 72 4e-11
AX149312_1(AX149312|pid:none) Sequence 5 from Patent WO0136606. 72 4e-11
AX149308_1(AX149308|pid:none) Sequence 1 from Patent WO0136606. 72 4e-11
AF386944_1(AF386944|pid:none) Arabidopsis thaliana Unknown prote... 72 4e-11
AF044128_1(AF044128|pid:none) Nicotiana tabacum protoporphyrinog... 71 7e-11
CP000046_1839(CP000046|pid:none) Staphylococcus aureus subsp. au... 70 2e-10
AE017194_1163(AE017194|pid:none) Bacillus cereus ATCC 10987, com... 70 2e-10
CR954206_362(CR954206|pid:none) Ostreococcus tauri strain OTTH05... 70 2e-10
AX084740_1(AX084740|pid:none) Sequence 9 from Patent WO0112825. ... 70 2e-10
CP000285_788(CP000285|pid:none) Chromohalobacter salexigens DSM ... 69 3e-10
(Q9AR38) RecName: Full=Protoporphyrinogen oxidase, chloroplastic... 69 3e-10
AP006627_1532(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, c... 69 3e-10
CP001186_984(CP001186|pid:none) Bacillus cereus G9842, complete ... 69 3e-10
AE016877_947(AE016877|pid:none) Bacillus cereus ATCC 14579, comp... 69 3e-10
CP001176_983(CP001176|pid:none) Bacillus cereus B4264, complete ... 69 3e-10
AF098937_1(AF098937|pid:none) Drosophila melanogaster protoporph... 68 7e-10
AE014297_3741(AE014297|pid:none) Drosophila melanogaster chromos... 68 7e-10
CP001283_1066(CP001283|pid:none) Bacillus cereus AH820, complete... 68 7e-10
A78959_1(A78959|pid:none) Sequence 13 from Patent WO9829554. 67 1e-09
AX084736_1(AX084736|pid:none) Sequence 5 from Patent WO0112825. ... 67 1e-09
BT037840_1(BT037840|pid:none) Zea mays full-length cDNA clone ZM... 67 1e-09
BT063659_1(BT063659|pid:none) Zea mays full-length cDNA clone ZM... 67 1e-09
AM263198_866(AM263198|pid:none) Listeria welshimeri serovar 6b s... 67 2e-09
AJ225107_1(AJ225107|pid:none) Solanum tuberosum (cultivar Bintje... 66 2e-09
AE016879_994(AE016879|pid:none) Bacillus anthracis str. Ames, co... 66 3e-09
AE017225_983(AE017225|pid:none) Bacillus anthracis str. Sterne, ... 66 3e-09
AM431293_2(AM431293|pid:none) Vitis vinifera contig VV78X114116.... 66 3e-09
CP000383_1551(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 66 3e-09
(Q94IG7) RecName: Full=Protoporphyrinogen oxidase, chloroplastic... 66 3e-09
CS204051_1(CS204051|pid:none) Sequence 4 from Patent EP1598423. ... 66 3e-09
CP000922_2251(CP000922|pid:none) Anoxybacillus flavithermus WK1,... 65 4e-09
AC1543(AC1543) protoporphyrinogen IX and coproporphyrinogen III ... 65 4e-09
CP000586_338(CP000586|pid:none) Ostreococcus lucimarinus CCE9901... 65 5e-09
BA000043_663(BA000043|pid:none) Geobacillus kaustophilus HTA426 ... 65 5e-09
FM242711_880(FM242711|pid:none) Listeria monocytogenes Clip81459... 65 6e-09
CP000909_627(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl... 65 6e-09
CP001575_185(CP001575|pid:none) Micromonas sp. RCC299 chromosome... 64 8e-09
CP000482_14(CP000482|pid:none) Pelobacter propionicus DSM 2379, ... 64 1e-08
AF030179_1(AF030179|pid:none) Chlamydomonas reinhardtii herbicid... 64 1e-08
AE017347_394(AE017347|pid:none) Cryptococcus neoformans var. neo... 64 1e-08
CP001132_713(CP001132|pid:none) Acidithiobacillus ferrooxidans A... 64 1e-08
AX084754_1(AX084754|pid:none) Sequence 23 from Patent WO0112825.... 64 1e-08
CP001147_707(CP001147|pid:none) Thermodesulfovibrio yellowstonii... 64 1e-08
BA000004_1204(BA000004|pid:none) Bacillus halodurans C-125 DNA, ... 63 2e-08
A81518(A81518) protoporphyrinogen oxidase CP0978 [imported] - Ch... 63 2e-08
EF678212_1(EF678212|pid:none) Picea sitchensis clone WS0284_H19 ... 63 2e-08
AP007154_445(AP007154|pid:none) Aspergillus oryzae RIB40 genomic... 63 2e-08
AE001363_868(AE001363|pid:none) Chlamydophila pneumoniae CWL029,... 62 4e-08
AE009440_915(AE009440|pid:none) Chlamydophila pneumoniae TW-183,... 62 4e-08
CP001472_2319(CP001472|pid:none) Acidobacterium capsulatum ATCC ... 62 5e-08
CP000360_695(CP000360|pid:none) Acidobacteria bacterium Ellin345... 62 5e-08
CP001390_3676(CP001390|pid:none) Geobacter sp. FRC-32, complete ... 62 5e-08
AP003020_25(AP003020|pid:none) Oryza sativa Japonica Group genom... 61 7e-08
CP000698_142(CP000698|pid:none) Geobacter uraniireducens Rf4, co... 61 9e-08
CP000813_944(CP000813|pid:none) Bacillus pumilus SAFR-032, compl... 61 9e-08
(P40012) RecName: Full=Protoporphyrinogen oxidase; Shor... 61 9e-08
AP008955_1816(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 60 2e-07
AL163817_1(AL163817|pid:none) Arabidopsis thaliana DNA chromosom... 60 2e-07
CP000875_4638(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 60 2e-07
BA000028_1169(BA000028|pid:none) Oceanobacillus iheyensis HTE831... 60 2e-07
AX084734_1(AX084734|pid:none) Sequence 3 from Patent WO0112825. ... 59 3e-07
BA000039_373(BA000039|pid:none) Thermosynechococcus elongatus BP... 59 3e-07
(O24164) RecName: Full=Protoporphyrinogen oxidase, mitochondrial... 59 3e-07
DQ386114_1(DQ386114|pid:none) Amaranthus tuberculatus biotype he... 59 3e-07
CP000471_27(CP000471|pid:none) Magnetococcus sp. MC-1, complete ... 59 3e-07
CP001337_3258(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 59 3e-07
DQ386113_1(DQ386113|pid:none) Amaranthus tuberculatus biotype he... 59 5e-07
A71476(A71476) probable protoporphyrinogen oxidase - Chlamydia t... 57 1e-06
BA000045_943(BA000045|pid:none) Gloeobacter violaceus PCC 7421 D... 57 1e-06
CP001472_2561(CP001472|pid:none) Acidobacterium capsulatum ATCC ... 57 2e-06
AE017180_13(AE017180|pid:none) Geobacter sulfurreducens PCA, com... 57 2e-06
AM453176_2(AM453176|pid:none) Vitis vinifera contig VV78X089794.... 56 2e-06
CP000804_1973(CP000804|pid:none) Roseiflexus castenholzii DSM 13... 56 3e-06
DQ386117_1(DQ386117|pid:none) Amaranthus tuberculatus biotype he... 56 3e-06
AP006861_136(AP006861|pid:none) Chlamydophila felis Fe/C-56 DNA,... 55 7e-06
AE002160_118(AE002160|pid:none) Chlamydia muridarum Nigg, comple... 55 7e-06
BT033827_1(BT033827|pid:none) Zea mays full-length cDNA clone ZM... 54 1e-05
CP000239_1048(CP000239|pid:none) Synechococcus sp. JA-3-3Ab, com... 54 1e-05
AF273767_1(AF273767|pid:none) Zea mays protoporphyrinogen IX oxi... 54 1e-05
CR848038_829(CR848038|pid:none) Chlamydophila abortus strain S26... 54 1e-05
AE000657_1391(AE000657|pid:none) Aquifex aeolicus VF5, complete ... 54 1e-05
AY032687_1(AY032687|pid:none) Homo sapiens protoporphyrinogen ox... 53 2e-05
CP000686_1691(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 53 2e-05
AM295250_1396(AM295250|pid:none) Staphylococcus carnosus subsp. ... 53 2e-05
BC077606_1(BC077606|pid:none) Xenopus laevis protoporphyrinogen ... 52 3e-05
DQ386118_1(DQ386118|pid:none) Amaranthus tuberculatus biotype he... 52 4e-05
AK142632_1(AK142632|pid:none) Mus musculus 10 days lactation, ad... 51 9e-05
(P51175) RecName: Full=Protoporphyrinogen oxidase; Shor... 51 9e-05
AC140850_23(AC140850|pid:none) Medicago truncatula clone mth2-11... 51 9e-05
BC002047_1(BC002047|pid:none) Mus musculus protoporphyrinogen ox... 51 9e-05
AB025102_1(AB025102|pid:none) Glycine max mRNA for protoporphyri... 50 1e-04
CP001154_2369(CP001154|pid:none) Laribacter hongkongensis HLHK9,... 50 2e-04
CT573213_2040(CT573213|pid:none) Frankia alni str. ACN14A chromo... 50 2e-04
CR382130_935(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 49 3e-04
CP000240_1388(CP000240|pid:none) Synechococcus sp. JA-2-3B'a(2-1... 49 3e-04
DQ394876_1(DQ394876|pid:none) Amaranthus tuberculatus biotype AC... 49 5e-04
AE017221_230(AE017221|pid:none) Thermus thermophilus HB27, compl... 48 6e-04
CP001615_2236(CP001615|pid:none) Exiguobacterium sp. AT1b, compl... 48 6e-04
CP001615_2451(CP001615|pid:none) Exiguobacterium sp. AT1b, compl... 48 6e-04
AY814525_1(AY814525|pid:none) Schistosoma japonicum SJCHGC09188 ... 48 8e-04
CP001283_2346(CP001283|pid:none) Bacillus cereus AH820, complete... 47 0.001
BX842655_226(BX842655|pid:none) Bdellovibrio bacteriovorus compl... 47 0.001
AE016879_2223(AE016879|pid:none) Bacillus anthracis str. Ames, c... 47 0.001
CP000903_2183(CP000903|pid:none) Bacillus weihenstephanensis KBA... 46 0.002
AE015925_868(AE015925|pid:none) Chlamydophila caviae GPIC, compl... 46 0.002
AF332964_1(AF332964|pid:none) Polytomella sp. Pringsheim 198.80 ... 46 0.003
AP006841_1912(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,... 45 0.005
CP000001_2144(CP000001|pid:none) Bacillus cereus E33L, complete ... 44 0.009
CP000485_2038(CP000485|pid:none) Bacillus thuringiensis str. Al ... 44 0.015
CP001407_2324(CP001407|pid:none) Bacillus cereus 03BB102, comple... 44 0.015
CP000249_1317(CP000249|pid:none) Frankia sp. CcI3, complete geno... 44 0.015
CP000764_1697(CP000764|pid:none) Bacillus cereus subsp. cytotoxi... 43 0.020
CP000227_2240(CP000227|pid:none) Bacillus cereus Q1, complete ge... 43 0.026
CP001022_694(CP001022|pid:none) Exiguobacterium sibiricum 255-15... 43 0.026
CP001177_2346(CP001177|pid:none) Bacillus cereus AH187, complete... 43 0.026
AB074530_1(AB074530|pid:none) Porphyromonas gingivalis hemG gene... 42 0.044
AP009380_204(AP009380|pid:none) Porphyromonas gingivalis ATCC 33... 42 0.057
CP000750_1580(CP000750|pid:none) Kineococcus radiotolerans SRS30... 41 0.075
CP001176_2244(CP001176|pid:none) Bacillus cereus B4264, complete... 40 0.13
CP000777_1101(CP000777|pid:none) Leptospira biflexa serovar Pato... 40 0.22
AE014299_4151(AE014299|pid:none) Shewanella oneidensis MR-1, com... 40 0.22
(Q50008) RecName: Full=Protoporphyrinogen oxidase; Shor... 39 0.49
T34679(T34679)probable protoporphyrinogen oxidase - Streptomyces... 38 0.64
AL939126_36(AL939126|pid:none) Streptomyces coelicolor A3(2) com... 38 0.64
CP000915_1079(CP000915|pid:none) Francisella tularensis subsp. m... 38 0.83
AY871923_1(AY871923|pid:none) Synthetic construct hypothetical p... 38 0.83
AJ749949_726(AJ749949|pid:none) Francisella tularensis subsp. tu... 38 0.83
CP000608_1216(CP000608|pid:none) Francisella tularensis subsp. t... 38 0.83
CP000803_1592(CP000803|pid:none) Francisella tularensis subsp. h... 38 0.83
CP000685_1072(CP000685|pid:none) Flavobacterium johnsoniae UW101... 37 1.8
DQ029345_1(DQ029345|pid:none) Toxoplasma gondii oxygen-dependent... 36 3.2
AP007155_675(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 36 3.2
AP009247_867(AP009247|pid:none) Candidatus Vesicomyosocius okuta... 36 3.2
AK302298_1(AK302298|pid:none) Homo sapiens cDNA FLJ57666 complet... 36 3.2
AY032688_1(AY032688|pid:none) Homo sapiens protoporphyrinogen ox... 36 3.2
BX248355_27(BX248355|pid:none) Corynebacterium diphtheriae gravi... 35 4.1
AE010301_20(AE010301|pid:none) Leptospira interrogans serovar La... 35 4.1
AP009493_1470(AP009493|pid:none) Streptomyces griseus subsp. gri... 35 4.1
CP000937_194(CP000937|pid:none) Francisella philomiragia subsp. ... 35 5.4
CP000685_2252(CP000685|pid:none) Flavobacterium johnsoniae UW101... 35 7.0
CP000469_2944(CP000469|pid:none) Shewanella sp. ANA-3, complete ... 34 9.2
AP011115_6844(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 34 9.2
>(Q54DT8) RecName: Full=Protoporphyrinogen oxidase;
Short=PPO; EC=1.3.3.4;
Length = 532
Score = 394 bits (1011), Expect = e-108
Identities = 203/219 (92%), Positives = 203/219 (92%)
Frame = +2
Query: 32 MIQKVXXXXXXXXXXXXXXXXRNGINLTSKFSKNNLKINIFEKSNKVGGNIQTRIIQGKN 211
MIQKV RNGINLTSKFSKNNLKINIFEKSNKVGGNIQTRIIQGKN
Sbjct: 1 MIQKVGIIGSGISGLSSYYYLRNGINLTSKFSKNNLKINIFEKSNKVGGNIQTRIIQGKN 60
Query: 212 KDEKIIVEEGPRSLRALGRGLNTLEFIKRLGISNDIIFSSANSNGKFVLLDGKPKEIPMT 391
KDEKIIVEEGPRSLRALGRGLNTLEFIKRLGISNDIIFSSANSNGKFVLLDGKPKEIPMT
Sbjct: 61 KDEKIIVEEGPRSLRALGRGLNTLEFIKRLGISNDIIFSSANSNGKFVLLDGKPKEIPMT 120
Query: 392 SLFDIIKFSFKHSIVSSILKEPFKKVPSQVKEMDPNWDESVHDFFSRRLGKTMTKTFIEP 571
SLFDIIKFSFKHSIVSSILKEPFKKVPSQVKEMDPNWDESVHDFFSRRLGKTMTKTFIEP
Sbjct: 121 SLFDIIKFSFKHSIVSSILKEPFKKVPSQVKEMDPNWDESVHDFFSRRLGKTMTKTFIEP 180
Query: 572 TILGIYGGDYTNLSIKSTFKRAALLEPFGGLILGSLFKS 688
TILGIYGGDYTNLSIKSTFKRAALLEPFGGLILGSLFKS
Sbjct: 181 TILGIYGGDYTNLSIKSTFKRAALLEPFGGLILGSLFKS 219
Score = 226 bits (576), Expect = 1e-57
Identities = 113/120 (94%), Positives = 114/120 (95%)
Frame = +1
Query: 733 KKVQSIITVMIGGNNGIKDRNDNWIDVTNTSKDKLLDIALKHLDKVLDIESSPDFTNVSI 912
+K QSIITVMIGGNNGIKDRNDNWIDVTNTSKDKLLDIALKHLDKVLDIESSPDFTNVSI
Sbjct: 411 EKDQSIITVMIGGNNGIKDRNDNWIDVTNTSKDKLLDIALKHLDKVLDIESSPDFTNVSI 470
Query: 913 YDNGIPHYNIGHLNLINEI*NHITKNYGTTLLLGGNSIDGVGINDSIHKSILLINSFKLS 1092
YDNGIPHYNIGH NLINEI NHITKNYGTTLLLGGNSIDGVGINDSIHKS LINS KLS
Sbjct: 471 YDNGIPHYNIGHQNLINEIQNHITKNYGTTLLLGGNSIDGVGINDSIHKSKQLINSLKLS 530
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,352,232,623
Number of extensions: 23347446
Number of successful extensions: 68789
Number of sequences better than 10.0: 153
Number of HSP's gapped: 68667
Number of HSP's successfully gapped: 206
Length of query: 407
Length of database: 1,040,966,779
Length adjustment: 131
Effective length of query: 276
Effective length of database: 621,205,444
Effective search space: 171452702544
Effective search space used: 171452702544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
1 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |