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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01557-1
Contig ID Contig-U01557-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01557-1 (Contig-U01557-1Q) /CSM_Contig/Contig-U01557-1Q.Seq.d
CAACTTTTACATTATGGACTTTATTATGTATTGGTTATTTATTTGTTTGC
ATGTTGGTATATTTATACAAATCACAACCTGAGCCAAAACAATCAAATTT
CGTTCACTTTTTCAATCAAATCACTTTTAAAAATTCTTTGGGCATTTTCA
GCACAATCAAAAGAATTAAAAGATAAATATTTATTAGTTGAATTCTTTAC
AACTTGGTCTCCACCATG
Gap no gap
Contig length 218
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 4412142
End point 4411922
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U01557
List of clone(s) 

est1=SSB606F,1,219
Translated Amino Acid sequence 
QLLHYGLYYVLVIYLFACWYIYTNHNLSQNNQISFTFSIKSLLKILWAFSAQSKELKDKY
LLVEFFTTWSPP
Translated Amino Acid sequence (All Frames) 
Frame A:
QLLHYGLYYVLVIYLFACWYIYTNHNLSQNNQISFTFSIKSLLKILWAFSAQSKELKDKY
LLVEFFTTWSPP


Frame B:
nfyimdfimywlficlhvgifiqitt*aktikfrslfqsnhf*kffghfqhnqkn*kini
y*lnslqlglhh


Frame C:
tftlwtllcigylfvcmlvylyksqpepkqsnfvhffnqitfknslgifstikrikr*if
is*ilynlvstm
own update 2004. 6. 7
Homology vs CSM-cDNA 
Query= Contig-U01557-1 (Contig-U01557-1Q)
/CSM_Contig/Contig-U01557-1Q.Seq.d
         (218 letters)

Database: CSM
           8361 sequences; 7,895,291 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01557-1 (Contig-U01557-1Q) /CSM_Contig/Conti...   432  e-122
Contig-U11626-1 (Contig-U11626-1Q) /CSM_Contig/Conti...    42  3e-04
Contig-U11714-1 (Contig-U11714-1Q) /CSM_Contig/Conti...    36  0.020
Contig-U11505-1 (Contig-U11505-1Q) /CSM_Contig/Conti...    36  0.020
Contig-U13503-1 (Contig-U13503-1Q) /CSM_Contig/Conti...    34  0.080
Contig-U12882-1 (Contig-U12882-1Q) /CSM_Contig/Conti...    34  0.080
Contig-U11468-1 (Contig-U11468-1Q) /CSM_Contig/Conti...    34  0.080
Contig-U11323-1 (Contig-U11323-1Q) /CSM_Contig/Conti...    34  0.080
Contig-U11312-1 (Contig-U11312-1Q) /CSM_Contig/Conti...    34  0.080
Contig-U09302-1 (Contig-U09302-1Q) /CSM_Contig/Conti...    34  0.080

>Contig-U01557-1 (Contig-U01557-1Q) /CSM_Contig/Contig-U01557-1Q.Seq.d
          Length = 218

 Score =  432 bits (218), Expect = e-122
 Identities = 218/218 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caacttttacattatggactttattatgtattggttatttatttgtttgcatgttggtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   caacttttacattatggactttattatgtattggttatttatttgtttgcatgttggtat 60

                                                                       
Query: 61  atttatacaaatcacaacctgagccaaaacaatcaaatttcgttcactttttcaatcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atttatacaaatcacaacctgagccaaaacaatcaaatttcgttcactttttcaatcaaa 120

                                                                       
Query: 121 tcacttttaaaaattctttgggcattttcagcacaatcaaaagaattaaaagataaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcacttttaaaaattctttgggcattttcagcacaatcaaaagaattaaaagataaatat 180

                                                 
Query: 181 ttattagttgaattctttacaacttggtctccaccatg 218
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttattagttgaattctttacaacttggtctccaccatg 218


>Contig-U11626-1 (Contig-U11626-1Q) /CSM_Contig/Contig-U11626-1Q.Seq.d
          Length = 794

 Score = 42.1 bits (21), Expect = 3e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 155 aatcaaaagaattaaaagata 175
           |||||||||||||||||||||
Sbjct: 408 aatcaaaagaattaaaagata 428


>Contig-U11714-1 (Contig-U11714-1Q) /CSM_Contig/Contig-U11714-1Q.Seq.d
          Length = 950

 Score = 36.2 bits (18), Expect = 0.020
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 10  cattatggactttattat 27
           ||||||||||||||||||
Sbjct: 139 cattatggactttattat 156


  Database: CSM
    Posted date:  Jun 7, 2004  8:33 AM
  Number of letters in database: 7,895,291
  Number of sequences in database:  8361
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6700
Number of Sequences: 8361
Number of extensions: 6700
Number of successful extensions: 2280
Number of sequences better than 10.0: 314
length of query: 218
length of database: 7,895,291
effective HSP length: 15
effective length of query: 203
effective length of database: 7,769,876
effective search space: 1577284828
effective search space used: 1577284828
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 5. 1
Homology vs DNA 
Query= Contig-U01557-1 (Contig-U01557-1Q) /CSM_Contig/Contig-U01557-1Q.Seq.d
         (218 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU071473) Dictyostelium discoideum slug cDNA, clone SSB606.      432   e-117  1
(DN748556) GL-Cf-5348 GLGC-LIB0001-cf Canis familiaris Norma...    40   0.089  2
(AX346770) Sequence 1841 from Patent WO0200928.                    36   0.097  4
(CT967305) M.truncatula DNA sequence from clone MTH2-3K5 on ...    42   0.10   6
(AC195631) Pan troglodytes BAC clone CH251-682P9 from chromo...    40   0.11   3
(AC214435) Zea mays chromosome 7 clone ZMMBBb-520P13; ZMMBBb...    48   0.13   1
(AC203444) Zea mays chromosome 7 clone CH201-108E24; ZMMBBc0...    48   0.13   1
(BH220042) 1006092A09.y1 1006 - RescueMu Grid G Zea mays gen...    48   0.13   1
(AC004709) Plasmodium falciparum chromosome 12, *** SEQUENCI...    36   0.20   5
(EJ196040) 1092344238440 Global-Ocean-Sampling_GS-27-01-01-1...    38   0.23   3
(EJ094181) 1095460248260 Global-Ocean-Sampling_GS-26-01-01-1...    32   0.27   3
(AC091660) Bos taurus clone RP42-354B6, complete sequence.         40   0.28   3
(BV360415) S231P6204RA10.T0 BedlingtonTerrier Canis familiar...    38   0.29   2
(CR388152) Zebrafish DNA sequence from clone CH211-220F21 in...    32   0.29   2
(CR925863) Zebrafish DNA sequence from clone DKEY-184N1 in l...    32   0.34   8
(AC155650) Mus musculus 6 BAC RP24-151E20 (Roswell Park Canc...    38   0.35   4
(AC145859) Pan troglodytes BAC clone RP43-6G18 from chromoso...    36   0.37   5
(AC079835) Homo sapiens BAC clone RP11-15O17 from 4, complet...    34   0.37   5
(ER569060) 1093015783372 Global-Ocean-Sampling_GS-36-01-01-2...    34   0.38   2
(CV981893) UMC-bmix_0A02-006-e07 Day 3 Corpus Luteum bmix Bo...    34   0.39   2
(ER574850) 1093015809484 Global-Ocean-Sampling_GS-36-01-01-2...    44   0.42   2
(AC111646) Rattus norvegicus clone CH230-103B10, *** SEQUENC...    40   0.46   3
(FM992695) Candida dubliniensis CD36 chromosome R, complete ...    46   0.52   1
(AL390375) Human DNA sequence from clone RP11-505I19 on chro...    46   0.52   1
(AC135251) Homo sapiens 12 BAC RP11-167E10 (Roswell Park Can...    46   0.52   1
(AC143303) Macaca mulatta clone CH250-270E14, *** SEQUENCING...    46   0.52   1
(AC092877) Homo sapiens chromosome 12q clone RP11-263A4, WOR...    46   0.52   1
(AL359812) Human DNA sequence *** SEQUENCING CANCELLED *** f...    46   0.52   1
(AC025603) Homo sapiens chromosome 12 clone RP11-263A4 map 1...    46   0.52   1
(AC234646) Felis catus BAC clone FCAB-88H12 from chromosome ...    36   0.58   7
(AP006628) Onion yellows phytoplasma OY-M DNA, complete genome.    34   0.82   10
(AC190113) Canis Familiaris chromosome 11, clone XX-440I7, c...    36   0.84   4
(CE011651) tigr-gss-dog-17000321031157 Dog Library Canis lup...    36   0.92   2
(AC105245) Homo sapiens chromosome 18, clone CTD-2515C13, co...    34   0.94   8
(AC181340) Strongylocentrotus purpuratus clone R3-4019M16, W...    34   0.95   5
(EY203406) PRAG-aaa75d09.b1 Sand_fly_EST_Normalized Phleboto...    34   1.0    2
(AC120680) Rattus norvegicus clone CH230-40I19, WORKING DRAF...    34   1.0    2
(CE070935) tigr-gss-dog-17000323049670 Dog Library Canis lup...    36   1.1    2
(AC097754) Rattus norvegicus clone CH230-75N5, *** SEQUENCIN...    34   1.1    2
(CU463167) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   1.1    2
(AL645755) Zebrafish DNA sequence from clone RP71-1N18 in li...    34   1.1    2
(AC147708) Canis Familiaris, clone XX-25G10, complete sequence.    40   1.1    6
(AC218891) Neofelis nebulosa clone CH87-264N18, WORKING DRAF...    38   1.1    6
(AC231452) Mustela putorius furo clone CH237-428O13, WORKING...    36   1.2    5
(CE268175) tigr-gss-dog-17000359920656 Dog Library Canis lup...    36   1.2    2
(BX901881) Zebrafish DNA sequence from clone CH211-138A18 in...    36   1.2    5
(AC168864) Bos taurus clone CH240-204A24, WORKING DRAFT SEQU...    38   1.2    3
(AC157349) Medicago truncatula chromosome 8 clone mth2-139l1...    32   1.4    8
(ER403179) 1095351039531 Global-Ocean-Sampling_GS-34-01-01-1...    38   1.4    2
(EJ457517) 1093017941851 Global-Ocean-Sampling_GS-28-01-01-1...    34   1.4    2
(CE195958) tigr-gss-dog-17000371503419 Dog Library Canis lup...    36   1.4    2
(CT374607) Sus scrofa genomic clone CH242-307K17, genomic su...    38   1.5    2
(AC185957) Teramnus labialis clone tl1-57l12, WORKING DRAFT ...    30   1.8    7
(BX511123) Zebrafish DNA sequence from clone DKEY-201I6 in l...    36   1.9    6
(BX294131) Zebrafish DNA sequence from clone CH211-254O18 in...    44   2.1    1
(AC124536) Mus musculus BAC clone RP23-332H4 from chromosome...    44   2.1    1
(AC102092) Mus musculus chromosome 3, clone RP23-20B1, compl...    44   2.1    1
(AC099722) Mus musculus chromosome 3, clone RP23-282E13, com...    44   2.1    1
(AM480292) Vitis vinifera contig VV78X049708.6, whole genome...    44   2.1    1
(DD010735) Diagnosis of known genetic Parameters within the ...    44   2.1    1
(AX344559) Sequence 10 from Patent WO0200932.                      44   2.1    1
(AF306443) Homo sapiens chromosome 8 clone RP11-79H13 map 8p...    44   2.1    1
(AC099685) Homo sapiens chromosome 8, clone RP11-87N16, comp...    44   2.1    1
(AC128821) Rattus norvegicus clone CH230-496J9, WORKING DRAF...    44   2.1    1
(AC125697) Rattus norvegicus clone CH230-45P9, *** SEQUENCIN...    44   2.1    1
(AC118329) Rattus norvegicus clone CH230-311E1, *** SEQUENCI...    44   2.1    1
(AC118113) Rattus norvegicus clone CH230-423N21, WORKING DRA...    44   2.1    1
(AC112432) Rattus norvegicus clone CH230-262P8, *** SEQUENCI...    44   2.1    1
(AC112410) Rattus norvegicus clone CH230-334L21, WORKING DRA...    44   2.1    1
(AC098347) Rattus norvegicus clone CH230-1O4, *** SEQUENCING...    44   2.1    1
(AC098185) Rattus norvegicus clone CH230-140H7, WORKING DRAF...    44   2.1    1
(CU928254) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   2.1    1
(CT827872) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   2.1    1
(AC231729) Monodelphis domestica clone VMRC18-665A16, WORKIN...    44   2.1    1
(AC231325) Monodelphis domestica clone VMRC18-438A21, WORKIN...    44   2.1    1
(AC224744) Bos taurus clone CH240-477J3, WORKING DRAFT SEQUE...    44   2.1    1
(AC172608) Bos taurus clone CH240-247J8, WORKING DRAFT SEQUE...    44   2.1    1
(AC171938) Bos taurus clone CH240-95E21, WORKING DRAFT SEQUE...    44   2.1    1
(AC171559) Macaca mulatta clone CH250-404E22, *** SEQUENCING...    44   2.1    1
(AC170202) Macaca mulatta clone CH250-102N2, WORKING DRAFT S...    44   2.1    1
(AC170201) Macaca mulatta clone CH250-192I12, WORKING DRAFT ...    44   2.1    1
(AC018704) Homo sapiens chromosome 8 clone RP11-87N16, WORKI...    44   2.1    1
(AZ885754) RPCI-23-193D20.TJ RPCI-23 Mus musculus genomic cl...    44   2.1    1
(AQ699023) HS_5567_A2_E07_T7A RPCI-11 Human Male BAC Library...    44   2.1    1
(FH967994) CHO_OF6785xb05f1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   2.1    1
(ER330171) 1092344248927 Global-Ocean-Sampling_GS-34-01-01-1...    44   2.1    1
(EJ891191) 1093018443034 Global-Ocean-Sampling_GS-30-02-01-1...    44   2.1    1
(EJ243960) 1095333031285 Global-Ocean-Sampling_GS-27-01-01-1...    44   2.1    1
(EJ221759) 1092351243575 Global-Ocean-Sampling_GS-27-01-01-1...    44   2.1    1
(EJ105126) 1092343133635 Global-Ocean-Sampling_GS-27-01-01-1...    44   2.1    1
(ED106426) AUAC-aaa14d12.b1 Ascaris suum whole genome shotgu...    44   2.1    1
(CZ268715) bes12_VM5_166N1_M13R_CD1166_096 VMRC-5 Armadillo ...    44   2.1    1
(CT226382) Sus scrofa genomic clone CH242-249E4, genomic sur...    44   2.1    1
(CE658732) tigr-gss-dog-17000368426829 Dog Library Canis lup...    44   2.1    1
(CE607595) tigr-gss-dog-17000312938978 Dog Library Canis lup...    44   2.1    1
(CE574811) tigr-gss-dog-17000366178241 Dog Library Canis lup...    44   2.1    1
(CE298375) tigr-gss-dog-17000359956562 Dog Library Canis lup...    44   2.1    1
(CE270741) tigr-gss-dog-17000333539351 Dog Library Canis lup...    44   2.1    1
(CE071665) tigr-gss-dog-17000323090175 Dog Library Canis lup...    44   2.1    1
(CC509232) CH240_352K17.T7 CHORI-240 Bos taurus genomic clon...    44   2.1    1
(BH726141) BOMJZ79TR BO_2_3_KB Brassica oleracea genomic clo...    44   2.1    1
(BY481400) Mus musculus 2 days neonate sympathetic ganglion ...    44   2.1    1
(BJ605840) Physcomitrella patens subsp. patens cDNA clone:pp...    44   2.1    1
(BJ167771) Physcomitrella patens subsp. patens cDNA clone:pp...    44   2.1    1
(BI741223) gc95e05.y1 Moss EST library PPN Physcomitrella pa...    44   2.1    1
(FC407801) CAYZ29372.fwd CAYZ Physcomitrella patens subsp. p...    44   2.1    1
(FC407800) CAYZ29372.rev CAYZ Physcomitrella patens subsp. p...    44   2.1    1
(AC137077) Medicago truncatula clone mth2-8g15, complete seq...    36   2.1    5
(AC187973) Canis Familiaris chromosome 11, clone XX-107E19, ...    40   2.3    4
(AC124158) Macaca mulatta clone CH250-337A5, complete sequence.    32   2.6    6
(BM273398) PfESToaa50c03.y1 Plasmodium falciparum 3D7 gameto...    34   2.8    2
(AC234649) Solanum tuberosum chromosome 6 clone RHPOTKEY064D...    38   2.8    3
(BX927398) Zebrafish DNA sequence from clone DKEY-270E21 in ...    32   2.9    3
(AC105216) Homo sapiens chromosome 18, clone RP11-382C11, co...    40   3.0    5
(CU861510) Zebrafish DNA sequence from clone CH73-322G6 in l...    38   3.0    4
(FP102496) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   3.3    3
(AC229960) Tupaia belangeri clone CH275-505K19, WORKING DRAF...    42   3.3    3
(AC224100) Bos taurus clone CH240-449P20, WORKING DRAFT SEQU...    30   3.4    7
(AC180848) Strongylocentrotus purpuratus clone R3-3026A13, W...    40   3.4    3
(CT573285) Zebrafish DNA sequence from clone CH211-107M4 in ...    40   3.5    5
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ...    36   3.6    6
(BV388969) S244P611FB3.T0 AlaskaGrayWolf Canis lupus STS gen...    36   3.6    2
(AC165608) Bos taurus clone CH240-169M19, *** SEQUENCING IN ...    34   3.7    3
(AC116100) Dictyostelium discoideum chromosome 2 map 6163571...    36   3.7    4
(AC169574) Bos taurus clone CH240-202D18, WORKING DRAFT SEQU...    34   3.7    5
(AC218443) Bos taurus clone CH240-274J7, WORKING DRAFT SEQUE...    34   3.8    2
(AC184962) Bos taurus clone CH240-302K15, WORKING DRAFT SEQU...    34   3.8    2
(BX572080) Zebrafish DNA sequence from clone DKEY-22N17 in l...    32   3.9    2
(AC188326) Microcebus murinus clone CH257-148L2, WORKING DRA...    34   3.9    2
(AC091611) Homo sapiens chromosome 1 clone RP11-369L17, comp...    32   3.9    2
(AC132628) Rattus norvegicus clone CH230-237A18, *** SEQUENC...    36   3.9    2
(CT573293) Zebrafish DNA sequence from clone DKEY-146D24 in ...    32   3.9    2
(BV379340) S245P6111FD2.T0 SpanishGrayWolf Canis lupus STS g...    36   4.0    2
(CE678186) tigr-gss-dog-17000329494541 Dog Library Canis lup...    38   4.0    2
(CE182143) tigr-gss-dog-17000326788544 Dog Library Canis lup...    38   4.1    2
(CR293506) Zebrafish DNA sequence from clone CH211-144M15 in...    32   4.2    2
(BX537347) Zebrafish DNA sequence from clone RP71-78P1 in li...    36   4.2    6
(BV321407) S236P6480FA3.T0 AlaskanMalamute Canis familiaris ...    40   4.3    2
(FH513356) CHO_OF4160xn06r1.ab1 CHO_OF4 Nicotiana tabacum ge...    28   4.4    3
(AC090563) Mus musculus chromosome 6, clone RP23-451F7, comp...    32   4.5    6
(AC201062) Strongylocentrotus purpuratus clone R3-12P20, WOR...    38   4.6    4
(CE154017) tigr-gss-dog-17000371360035 Dog Library Canis lup...    40   4.8    2
(AC123105) Rattus norvegicus clone CH230-81F9, *** SEQUENCIN...    36   4.9    2
(AC122651) Rattus norvegicus clone CH230-214L17, WORKING DRA...    36   4.9    2
(BX088567) Mouse DNA sequence from clone RP23-21L20 on chrom...    34   5.0    8
(BU748085) CH3#017_G01T7 Canine heart normalized cDNA Librar...    34   5.0    2
(EK290149) 1095462327733 Global-Ocean-Sampling_GS-31-01-01-1...    40   5.1    2
(DX397083) GE__Sa0085C02.b1 Gossypium exiguum WGS library Go...    38   5.1    2
(EJ625164) 1092963147441 Global-Ocean-Sampling_GS-29-01-01-1...    30   5.1    3
(BV439796) S237P619FE6.T0 PortugueseWaterDog Canis familiari...    36   5.1    2
(CU013516) Medicago truncatula chromosome 5 clone mte1-13o15...    32   5.2    5
(EG553974) to00278 Tomato CL5915 roots under different devel...    32   5.3    2
(FE015662) C0009507H11.Q1KM13R KN510 M. bovis infected Bos t...    34   5.3    2
(CX316634) JGI_XZT66479.fwd NIH_XGC_tropTad5 Xenopus (Silura...    36   5.4    2
(AM427944) Vitis vinifera contig VV78X076481.6, whole genome...    34   5.7    4
(AC186988) Canis Familiaris chromosome 29, clone XX-319E23, ...    42   5.8    4
(BX957271) Zebrafish DNA sequence from clone CH211-130N22 in...    34   5.9    6
(AP000413) Arabidopsis thaliana genomic DNA, chromosome 3, T...    32   5.9    5
(AC005690) Homo sapiens chromosome 4 clone C0483I23, complet...    36   6.0    5
(AM480020) Vitis vinifera contig VV78X223962.12, whole genom...    42   6.0    2
(DJ060365) Method and nucleic acids for the improved treatme...    32   6.0    3
(DJ060243) Method and nucleic acids for the improved treatme...    32   6.0    3
(CS124712) Sequence 398 from Patent WO2005059172.                  32   6.0    3
(CS124590) Sequence 276 from Patent WO2005059172.                  32   6.0    3
(AE014830) Plasmodium falciparum 3D7 chromosome 10 section 2...    32   6.1    7
(CP000803) Francisella tularensis subsp. holarctica FTNF002-...    36   6.2    14
(AC008519) Homo sapiens chromosome 5 clone CTC-460G13, compl...    40   6.2    5
(BK006741) TPA_reasm: Francisella tularensis subsp. holarcti...    36   6.3    14
(CP000437) Francisella tularensis subsp. holarctica OSU18, c...    36   6.3    14
(AM233362) Francisella tularensis subsp. holarctica LVS comp...    36   6.3    14
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3...    38   6.4    7
(AC232720) Lama pacos clone CH246-257F19, WORKING DRAFT SEQU...    34   6.5    6
(AC112328) Rattus norvegicus clone CH230-181O13, *** SEQUENC...    38   6.6    6
(AC094019) Homo sapiens chromosome 3 clone RP11-345J6, compl...    38   6.6    4
(EJ623383) 1092963109713 Global-Ocean-Sampling_GS-29-01-01-1...    30   7.1    3
(AC114600) Mus musculus chromosome 5, clone RP23-332O18, com...    38   7.2    4
(AC220351) Bos taurus clone CH240-361E8, WORKING DRAFT SEQUE...    36   7.3    5
(CU856231) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   7.4    4
(AC184805) Canis Familiaris chromosome 1, clone XX-68J13, co...    42   7.4    4
(AC153291) Bos taurus clone CH240-19K9, WORKING DRAFT SEQUEN...    30   7.5    6
(AL035475) Plasmodium falciparum MAL4P2.                           36   8.1    6
(BX649543) Zebrafish DNA sequence from clone DKEY-238K23 in ...    42   8.1    1
(BV530733) G591P617048FF8.T0 Clint Pan troglodytes verus STS...    42   8.1    1
(BV515910) rph47b11.b1 Clint Pan troglodytes verus STS genom...    42   8.1    1
(BV424741) S237P6453FF6.T0 PortugueseWaterDog Canis familiar...    42   8.1    1
(BV402984) S229P6264RE6.T0 GermanShepherd Canis familiaris S...    42   8.1    1
(BV395795) S243P6155FG2.T0 CaliforniaCoyote Canis latrans ST...    42   8.1    1
(BV388186) S244P6403FA10.T0 AlaskaGrayWolf Canis lupus STS g...    42   8.1    1
(CT025155) Mouse DNA sequence from clone RP23-228F18 on chro...    42   8.1    1
(AC160549) Mus musculus chromosome 3, clone RP23-276K18, com...    42   8.1    1
(AC155264) Mus musculus BAC clone RP23-281B4 from chromosome...    42   8.1    1
(AC123728) Mus musculus chromosome 3, clone RP23-453L19, com...    42   8.1    1
(AC115721) Mus musculus chromosome 3, clone RP23-9P8, comple...    42   8.1    1
(AC113224) Mus musculus strain C57BL6/J chromosome 6 clone R...    42   8.1    1
(AC068066) Mus musculus strain C57BL6/J chromosome 6 clone R...    42   8.1    1
(BS000084) Pan troglodytes chromosome 22 clone:RP43-100I03, ...    42   8.1    1
(AL954232) Pan troglodytes chromosome 22 BAC RP43-039B12.          42   8.1    1
(AL954231) Pan troglodytes chromosome 22 BAC PTB-144O12.           42   8.1    1
(AL954230) Pan troglodytes chromosome 22 BAC RP43-035C13.          42   8.1    1
(CU012060) M.truncatula DNA sequence from clone MTH2-62K13 o...    42   8.1    1
(CT025839) Medicago truncatula chromosome 5 clone mth4-19c21...    42   8.1    1
(CT009535) M.truncatula DNA sequence from clone MTH2-68D12 o...    42   8.1    1
(CR955009) Medicago truncatula chromosome 5 clone mth2-38i20...    42   8.1    1
(AM473054) Vitis vinifera contig VV78X235755.18, whole genom...    42   8.1    1
(AC174343) Medicago truncatula chromosome 6 clone mth2-166f7...    42   8.1    1
(AC151740) Medicago truncatula chromosome 6 clone mth2-82n16...    42   8.1    1
(AC148818) Medicago truncatula clone mth2-39c7, complete seq...    42   8.1    1
(AC144759) Medicago truncatula clone mth2-15b21, complete se...    42   8.1    1
(AC123596) Medicago truncatula clone mth1-17n5, complete seq...    42   8.1    1
(AF191796) His1 virus, complete genome.                            42   8.1    1
(CS623703) Sequence 254 from Patent WO2006071466.                  42   8.1    1
(CS623575) Sequence 126 from Patent WO2006071466.                  42   8.1    1
(U21323) Caenorhabditis elegans cosmid C45G9, complete seque...    42   8.1    1
(AE014296) Drosophila melanogaster chromosome 3L, complete s...    42   8.1    1
(AC023750) Drosophila melanogaster 3L BAC RP98-15C16 (Roswel...    42   8.1    1
(AC079240) Homo sapiens BAC clone RP11-808H17 from 4, comple...    42   8.1    1
(AC022743) Homo sapiens chromosome 18, clone RP11-789C7, com...    42   8.1    1
(AC006146) Homo sapiens PAC clone RP4-693M11 from 14q24.3, c...    42   8.1    1
(AC156697) Bos taurus clone CH240-55O19, WORKING DRAFT SEQUE...    42   8.1    1
(AC144358) Pan troglodytes clone CH251-403K11, WORKING DRAFT...    42   8.1    1
(AC142556) Pan troglodytes clone CH251-76O6, WORKING DRAFT S...    42   8.1    1
(AC142555) Pan troglodytes clone CH251-526K6, WORKING DRAFT ...    42   8.1    1
(AC142554) Pan troglodytes clone CH251-151H11, WORKING DRAFT...    42   8.1    1
(AC129169) Rattus norvegicus clone CH230-8N4, WORKING DRAFT ...    42   8.1    1
(AC128370) Rattus norvegicus clone CH230-116E9, *** SEQUENCI...    42   8.1    1
(AC108325) Rattus norvegicus clone CH230-302G14, *** SEQUENC...    42   8.1    1
(AC105618) Rattus norvegicus clone CH230-87F18, *** SEQUENCI...    42   8.1    1
(AC103050) Rattus norvegicus clone CH230-145I10, *** SEQUENC...    42   8.1    1
(EU719666) Medicago truncatula chromosome 7 clone MtB_13O08,...    42   8.1    1
(CU928610) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   8.1    1
(CU896617) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   8.1    1
(CU571058) M.truncatula DNA sequence *** SEQUENCING IN PROGR...    42   8.1    1
(CU062409) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   8.1    1
(AP001797) Homo sapiens genomic DNA, chromosome 18q12 clone:...    42   8.1    1
(AC232953) Microcebus murinus clone CH257-133A5, WORKING DRA...    42   8.1    1
(AC212884) Zea mays chromosome 2 clone CH201-128M7; ZMMBBc01...    42   8.1    1
(AC207252) Zea mays chromosome 2 clone CH201-61J14; ZMMBBc00...    42   8.1    1
(AC206509) Zea mays chromosome 2 clone CH201-64B21; ZMMBBc00...    42   8.1    1
(AC202643) Callithrix jacchus clone CH259-271H2, WORKING DRA...    42   8.1    1
(AC199380) Zea mays chromosome 8 clone CH201-46P7; ZMMBBc004...    42   8.1    1
(AC199140) Canis lupus familiaris clone XX-153J14, *** SEQUE...    42   8.1    1
(AC197321) Papio anubis clone RP41-165K7, WORKING DRAFT SEQU...    42   8.1    1
(AC188334) Microcebus murinus clone CH257-532M6, WORKING DRA...    42   8.1    1
(AC165815) Bos taurus clone CH240-158H9, WORKING DRAFT SEQUE...    42   8.1    1
(AC163118) Bos taurus clone CH240-120F1, WORKING DRAFT SEQUE...    42   8.1    1
(AC162976) Bos taurus clone CH240-125H6, WORKING DRAFT SEQUE...    42   8.1    1
(AC017166) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    42   8.1    1
(AC015570) Homo sapiens chromosome 18 clone RP11-453F17 map ...    42   8.1    1
(AC011949) Homo sapiens clone RP11-17E12, WORKING DRAFT SEQU...    42   8.1    1
(AC011947) Homo sapiens clone RP11-17D12, WORKING DRAFT SEQU...    42   8.1    1
(AZ501299) 1M0340A07F Mouse 10kb plasmid UUGC1M library Mus ...    42   8.1    1
(FI077252) CHO_OF7372xe02f1.ab1 CHO_OF7 Nicotiana tabacum ge...    42   8.1    1
(FH549080) CHO_OF4515xc24r1.ab1 CHO_OF4 Nicotiana tabacum ge...    42   8.1    1
(FH548999) CHO_OF4515xc24f1.ab1 CHO_OF4 Nicotiana tabacum ge...    42   8.1    1
(ET369174) S0255J16_SP6 CHORI-214 Salmo salar genomic clone ...    42   8.1    1
(ET257178) S0141O24_SP6 CHORI-214 Salmo salar genomic clone ...    42   8.1    1
(ER618128) 1093017357542 Global-Ocean-Sampling_GS-36-01-01-2...    42   8.1    1
(ER617689) 1093017314431 Global-Ocean-Sampling_GS-36-01-01-2...    42   8.1    1
(ER606521) 1093016280246 Global-Ocean-Sampling_GS-36-01-01-2...    42   8.1    1
(ER536806) 1093015860690 Global-Ocean-Sampling_GS-35-01-01-1...    42   8.1    1
(ER462300) 1092963900953 Global-Ocean-Sampling_GS-35-01-01-1...    42   8.1    1
(EK251104) 1095460280533 Global-Ocean-Sampling_GS-31-01-01-1...    42   8.1    1
(EK239057) 1095460214404 Global-Ocean-Sampling_GS-31-01-01-1...    42   8.1    1
(EK121189) 1092963439479 Global-Ocean-Sampling_GS-31-01-01-1...    42   8.1    1
(EK020140) 1092955271456 Global-Ocean-Sampling_GS-31-01-01-1...    42   8.1    1
(EK017135) 1092955244576 Global-Ocean-Sampling_GS-31-01-01-1...    42   8.1    1
(EJ985672) 1093023008279 Global-Ocean-Sampling_GS-30-02-01-1...    42   8.1    1
(EJ935988) 1093018838601 Global-Ocean-Sampling_GS-30-02-01-1...    42   8.1    1
(EJ933295) 1093018817068 Global-Ocean-Sampling_GS-30-02-01-1...    42   8.1    1
(EJ840798) 1093017827952 Global-Ocean-Sampling_GS-30-02-01-1...    42   8.1    1
(EJ775147) 1092990702031 Global-Ocean-Sampling_GS-30-02-01-1...    42   8.1    1
(EJ759016) 1092963109447 Global-Ocean-Sampling_GS-30-02-01-1...    42   8.1    1
(EJ737031) 1092961205341 Global-Ocean-Sampling_GS-30-02-01-1...    42   8.1    1
(EJ516799) 1092955098750 Global-Ocean-Sampling_GS-29-01-01-1...    42   8.1    1
(EJ512535) 1095407110224 Global-Ocean-Sampling_GS-28-01-01-1...    42   8.1    1
(EJ208712) 1092345350770 Global-Ocean-Sampling_GS-27-01-01-1...    42   8.1    1
(EJ193421) 1092344218696 Global-Ocean-Sampling_GS-27-01-01-1...    42   8.1    1
(EJ190443) 1092344189275 Global-Ocean-Sampling_GS-27-01-01-1...    42   8.1    1
(EJ081313) 1095460036519 Global-Ocean-Sampling_GS-26-01-01-1...    42   8.1    1
(ED764174) GM_WBb0136E05.r GM_WBb Glycine max genomic clone ...    42   8.1    1
(ED134681) AUAC-aaj57f12.b1 Ascaris suum whole genome shotgu...    42   8.1    1
(DX989981) CHORI103-10B8.TJ CHORI103 Schistosoma mansoni gen...    42   8.1    1
(CZ502945) GMW2-19F5a.g1 GMW2 Glycine max genomic, genomic s...    42   8.1    1
(CZ405599) 1001302 RP42 Bos taurus genomic clone RP42-164H12...    42   8.1    1
(CW541887) HpyCH4IV-2_1_M20_T3 HpyCH4IV-2 Zea mays genomic s...    42   8.1    1
(CW494047) fsbb001f285b20k0 Sorghum methylation filtered lib...    42   8.1    1
(CT267189) Sus scrofa genomic clone CH242-194C12, genomic su...    42   8.1    1
(CR351915) mte1-9H17RM1 BAC end, cultivar Jemalong A17 of Me...    42   8.1    1
(CG748857) P042-4-E11.za Ppa EcoRI BAC Library Pristionchus ...    42   8.1    1
(CG108574) PUJFC53TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    42   8.1    1
(CG073222) PUIKU20TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    42   8.1    1
(CE837029) tigr-gss-dog-17000332594065 Dog Library Canis lup...    42   8.1    1
(CE778826) tigr-gss-dog-17000330644436 Dog Library Canis lup...    42   8.1    1
(CE412262) tigr-gss-dog-17000362289377 Dog Library Canis lup...    42   8.1    1
(CE295646) tigr-gss-dog-17000333900554 Dog Library Canis lup...    42   8.1    1
(CE247283) tigr-gss-dog-17000334708061 Dog Library Canis lup...    42   8.1    1
(CE110008) tigr-gss-dog-17000324520570 Dog Library Canis lup...    42   8.1    1
(CC132013) NDL.20I9.SP6 Notre Dame Liverpool Aedes aegypti g...    42   8.1    1
(BZ820584) PUGEQ13TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    42   8.1    1
(EH762246) CNSL8245.b1_J21.ab1 CNS(LMS) yellow starthistle C...    42   8.1    1
(EH762236) CNSL8235.b1_F19.ab1 CNS(LMS) yellow starthistle C...    42   8.1    1
(EG620085) REPROTRACTF101157B10 POSSUM_01-POSSUM-C-REPROTRAC...    42   8.1    1
(EE777705) 020709OMGB11064050HT OMGB1 Ovis aries cDNA, mRNA ...    42   8.1    1
(DY891236) CeleSEQ7927 Cunninghamella elegans pBluescript (E...    42   8.1    1
(AU284570) Dictyostelium discoideum gamete cDNA clone:FC-BD1...    42   8.1    1
(AM859312) Crassostrea gigas EST, 5' end sequence, clone cdn...    42   8.1    1
(AM043413) Schistosoma mansoni lung schistosomulum EST, clon...    42   8.1    1
(CD138477) MG1-0053T-D238-B08-U.B MG1-0053 Schistosoma manso...    42   8.1    1
(C22963) Dictyostelium discoideum gamete cDNA, clone FC-AL03.      42   8.1    1
(BM931440) UI-E-EJ1-ajg-a-07-0-UI.r1 UI-E-EJ1 Homo sapiens c...    42   8.1    1
(BG603485) EST502575 Plasmodium yoelii sporozoite cDNA Plasm...    42   8.1    1
(BB899958) Macaca fascicularis cDNA clone: Qlv-U302A-A1, 3'e...    42   8.1    1
(FK670681) CF_WO1_01F02_SP6 Copepod Whole Organism, Normaliz...    42   8.1    1
(AC231480) Monodelphis domestica clone VMRC18-962A8, WORKING...    36   8.1    3
(AC128897) Rattus norvegicus clone CH230-288O6, *** SEQUENCI...    36   8.2    6
(CU570764) M.truncatula DNA sequence from clone MTH2-172I10 ...    36   8.3    4
(AC160302) Bos taurus clone CH240-81M20, WORKING DRAFT SEQUE...    38   8.3    4
(AC188149) Canis Familiaris chromosome 9, clone XX-305E22, c...    40   8.4    7
(AC186977) Canis Familiaris chromosome 2, clone XX-262H22, c...    40   8.4    7
(CU062586) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   8.6    5
(AC142094) Medicago truncatula clone mth2-34h6, complete seq...    36   8.6    5
(AC186174) Gallus gallus BAC clone CH261-92O14 from chromoso...    36   8.7    5
(AC165104) Bos taurus clone CH240-141H6, *** SEQUENCING IN P...    36   9.0    4
(AC144760) Medicago truncatula chromosome 6 clone mth2-8p15,...    34   9.5    5
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    34   9.7    10
(CE354333) tigr-gss-dog-17000361476206 Dog Library Canis lup...    32   10.0   2
(CU468906) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   10.0   4

>(AU071473) Dictyostelium discoideum slug cDNA, clone SSB606.
          Length = 219

 Score =  432 bits (218), Expect = e-117
 Identities = 218/218 (100%)
 Strand = Plus / Plus


Query: 1   caacttttacattatggactttattatgtattggttatttatttgtttgcatgttggtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   caacttttacattatggactttattatgtattggttatttatttgtttgcatgttggtat 60


Query: 61  atttatacaaatcacaacctgagccaaaacaatcaaatttcgttcactttttcaatcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atttatacaaatcacaacctgagccaaaacaatcaaatttcgttcactttttcaatcaaa 120


Query: 121 tcacttttaaaaattctttgggcattttcagcacaatcaaaagaattaaaagataaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcacttttaaaaattctttgggcattttcagcacaatcaaaagaattaaaagataaatat 180


Query: 181 ttattagttgaattctttacaacttggtctccaccatg 218
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttattagttgaattctttacaacttggtctccaccatg 218

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 375,690,003
Number of extensions: 25660934
Number of successful extensions: 7795472
Number of sequences better than 10.0: 331
Length of query: 218
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 195
Effective length of database: 99,442,330,388
Effective search space: 19391254425660
Effective search space used: 19391254425660
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.18
Homology vs Protein 
Query= Contig-U01557-1 (Contig-U01557-1Q) /CSM_Contig/Contig-U01557-1Q.Seq.d
         (218 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY286220_1(AY286220|pid:none) Albugo occidentalis cytochrome oxi...    36   0.37
AY913805_1(AY913805|pid:none) Albugo amaranthi voucher SMK19835 ...    35   1.1
AY913807_1(AY913807|pid:none) Albugo achyranthis voucher SMK1995...    33   3.2
(Q89AB3) RecName: Full=Exodeoxyribonuclease V beta chain;       ...    33   4.1
CP000139_1920(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,...    33   4.1
CP000413_1165(CP000413|pid:none) Lactobacillus gasseri ATCC 3332...    32   7.0
CP000140_1743(CP000140|pid:none) Parabacteroides distasonis ATCC...    32   7.0
CP000777_1837(CP000777|pid:none) Leptospira biflexa serovar Pato...    32   7.0
CP000103_450(CP000103|pid:none) Nitrosospira multiformis ATCC 25...    32   9.2
(Q9P332) RecName: Full=UPF0742 protein C750.04c/C977.02;  &AL137...    32   9.2
(Q9P3V7) RecName: Full=UPF0742 protein C1348.03;  &AL358912_3(AL...    32   9.2
AY913806_1(AY913806|pid:none) Albugo portulacae voucher SMK18991...    32   9.2

>AY286220_1(AY286220|pid:none) Albugo occidentalis cytochrome
           oxidase subunit II (COX2) gene, partial cds;
           mitochondrial gene for mitochondrial product.
          Length = 199

 Score = 36.2 bits (82), Expect = 0.37
 Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
 Frame = +1

Query: 10  HYGLYYVLVIYLFACWYIYTNHNL--SQNNQISFTFSIKSLLKILW 141
           H  +Y++++I +F CW ++   NL   + N+IS TF   S ++I+W
Sbjct: 13  HDLMYFLIIITIFVCWILFRIVNLFNEKKNKISETFVHGSTIEIVW 58

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 362,652,173
Number of extensions: 7005984
Number of successful extensions: 18277
Number of sequences better than 10.0: 12
Number of HSP's gapped: 18259
Number of HSP's successfully gapped: 12
Length of query: 72
Length of database: 1,051,180,864
Length adjustment: 43
Effective length of query: 29
Effective length of database: 912,008,827
Effective search space: 26448255983
Effective search space used: 26448255983
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 27 (15.0 bits)
PSORT 

 psg: 0.95  gvh: 0.69  alm: 0.61  top: 0.70  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: mitochondrial
	 24.0 %: extracellular, including cell wall
	 16.0 %: cytoplasmic
	 12.0 %: nuclear
	  8.0 %: vacuolar
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal

>> prediction for Contig-U01557-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0