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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U09246-1
Contig ID Contig-U09246-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U09246-1 (Contig-U09246-1Q) /CSM_Contig/Contig-U09246-1Q.Seq.d
AAAAAAAAAAAAAAAAAAGAATAAAAAGAAAAAAAAAAAAAAAAAGAGTT
AAAGTTATAAATAAAATAATATAATATATAAAATGATAAAATCGATTGTG
TTTTTAAGCACAATTTTATTTTTGACTTTTTTAACTTGGTGTAAATGGCC
AATTTCAAAATAGT----------GAACCTGTAGATTTCGTTTGGGCACA
TGGTCAAGATAATTCATTTGGCTTCCATGGTGTTGGTAATGCAGGCAGAA
CCACAAGTGAATCTTGCCACCGGTAGCACCAATAGTGGTCCAGATTATGT
AAATTGGCATGCAAGTTTAATGTTGGTTGCATTTGGTTTATTGATGCCAT
TCAGTATTTTCAGTGCCCGTTTCTTAAAAGTTTTCCACTGGTGGTGGCCA
CTTCATTACGTTTTCAATGGTTTGGCATCAGTTTGCGCTTTAATTGGCTT
CATCATCGCAATTGTCATGTTGGATGGTTTGGATTTCTCTACACTTCATA
GTATTTTTGGTATAACATACATTATGTTTGGTATTGGTTTCAATTCTATT
TGGTGCACTTTCTTACTTCCTTTGGAAACCAACTAGAGTTGGTACTCCAA
TTTTCCCTGATATGTTCCATTGGTTCGTTGGTCGTTGTACATTTGCTTTA
TCAATTGCTGCTATCATCACTGGTATGGTACTTCACCAAGTTCCAACCGC
TGTTATCATAGTTTTCTCTGGTGTTATTGCTTTATACTTTGGTGTTATTA
TTTTCATTGAAATTTATAAAAAAGTTTATCCAAATCATGTAGATTTTTCA
CATGGTGGTGCAACTGGTTATACTCAAGGTATAAATCATAATTAAAAAAA
TTTAAAAAAAAAAAAAAAAAAAAAATGTAAAAAAAAAA
Gap gap included
Contig length 878
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 2017151
End point 2016272
Strand (PLUS/MINUS) MINUS
Number of clones 7
Number of EST 8
Link to clone list U09246
List of clone(s) 

est1=SLI779F,1,165
est2=VFD369Z,166,689
est3=VFM418Z,174,721
est4=VFO754Z,235,699
est5=VFI841Z,239,721
est6=VFG363Z,285,719
est7=VFN452Z,453,651
est8=SLI779Z,536,880
Translated Amino Acid sequence 
kkkkkrikrkkkkkrvkvinkii*yik**nrlcf*aqfyf*lf*LGVNGQFQNS---

---EPVDFVWAHGQDNSFGFHGVGNAGRTTSESCHR*hq*wsrlcklackfnvgciwfid
aiqyfqcpflksfplvvatslrfqwfgislrfnwlhhrnchvgwfgflyts*yfwynihy
vwywfqfylvhfltsfgnqlelvlqfslicsigslvvvhllyqlllsslvwyftkfqpll
s*fslvlllytlvllfslkfikkfiqim*ifhmvvqlvilkv*iiikki*kkkkkknvkk
k
Translated Amino Acid sequence (All Frames) 
Frame A:
kkkkkke*kekkkkkelkl*ik*yni*ndkidcvfkhnfifdffnlv*manfki---

---EPVDFVWAHGQDNSFGFHGVGNAGRTTSESCHR*hq*wsrlcklackfnvgciwfid
aiqyfqcpflksfplvvatslrfqwfgislrfnwlhhrnchvgwfgflyts*yfwynihy
vwywfqfylvhfltsfgnqlelvlqfslicsigslvvvhllyqlllsslvwyftkfqpll
s*fslvlllytlvllfslkfikkfiqim*ifhmvvqlvilkv*iiikki*kkkkkknvkk
k

Frame B:
kkkkkknkkkkkkkks*syk*nniiykmiksivflstilfltfltwckwpisk*---

---nl*isfghmvkiihlasmvlvmqaepqvnlatgstnsgpdyvnwhaslmlvafgllm
pfsifsarflkvfhwwwplhyvfnglasvcaligfiiaivmldgldfstlhsifgityim
fgigfnsiwctfllpletn*swysnfp*yvplvrwslyicfinccyhhwygtspssnrcy
hsflwcycfilwcyyfh*nl*kslskscrfftwwcnwlysryks*lkkfkkkkkkkm*kk

Frame C:
kkkkkrikrkkkkkrvkvinkii*yik**nrlcf*aqfyf*lf*LGVNGQFQNS---

---tcrfrlgtwsr*fiwlpwcw*crqnhk*ilppvapivvqim*igmqv*cwlhlvy*c
hsvfsvpvs*kfstggghfitfsmvwhqfal*lasssqlscwmvwislhfivflv*htlc
lvlvsilfgalsyflwkptrvgtpifpdmfhwfvgrctfalsiaaiitgmvlhqvptavi
ivfsgvialyfgviifieiykkvypnhvdfshggatgytqginhn*knlkkkkkkkckkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U09246-1 (Contig-U09246-1Q)
/CSM_Contig/Contig-U09246-1Q.Seq.d
         (888 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09246-1 (Contig-U09246-1Q) /CSM_Contig/Conti...  1350  0.0
Contig-U11727-1 (Contig-U11727-1Q) /CSM_Contig/Conti...    36  0.063
Contig-U11246-1 (Contig-U11246-1Q) /CSM_Contig/Conti...    36  0.063
Contig-U09314-1 (Contig-U09314-1Q) /CSM_Contig/Conti...    36  0.063
Contig-U14848-1 (Contig-U14848-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U13282-1 (Contig-U13282-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U12865-1 (Contig-U12865-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U12377-1 (Contig-U12377-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U10029-1 (Contig-U10029-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U07993-1 (Contig-U07993-1Q) /CSM_Contig/Conti...    34  0.25

>Contig-U09246-1 (Contig-U09246-1Q) /CSM_Contig/Contig-U09246-1Q.Seq.d
          Length = 888

 Score = 1350 bits (681), Expect = 0.0
 Identities = 711/711 (100%)
 Strand = Plus / Plus

                                                                       
Query: 133 aacttggtgtaaatggccaatttcaaaatagtnnnnnnnnnngaacctgtagatttcgtt 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 aacttggtgtaaatggccaatttcaaaatagtnnnnnnnnnngaacctgtagatttcgtt 192

                                                                       
Query: 193 tgggcacatggtcaagataattcatttggcttccatggtgttggtaatgcaggcagaacc 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tgggcacatggtcaagataattcatttggcttccatggtgttggtaatgcaggcagaacc 252

                                                                       
Query: 253 acaagtgaatcttgccaccggtagcaccaatagtggtccagattatgtaaattggcatgc 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 acaagtgaatcttgccaccggtagcaccaatagtggtccagattatgtaaattggcatgc 312

                                                                       
Query: 313 aagtttaatgttggttgcatttggtttattgatgccattcagtattttcagtgcccgttt 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aagtttaatgttggttgcatttggtttattgatgccattcagtattttcagtgcccgttt 372

                                                                       
Query: 373 cttaaaagttttccactggtggtggccacttcattacgttttcaatggtttggcatcagt 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cttaaaagttttccactggtggtggccacttcattacgttttcaatggtttggcatcagt 432

                                                                       
Query: 433 ttgcgctttaattggcttcatcatcgcaattgtcatgttggatggtttggatttctctac 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ttgcgctttaattggcttcatcatcgcaattgtcatgttggatggtttggatttctctac 492

                                                                       
Query: 493 acttcatagtatttttggtataacatacattatgtttggtattggtttcaattctatttg 552
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 acttcatagtatttttggtataacatacattatgtttggtattggtttcaattctatttg 552

                                                                       
Query: 553 gtgcactttcttacttcctttggaaaccaactagagttggtactccaattttccctgata 612
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gtgcactttcttacttcctttggaaaccaactagagttggtactccaattttccctgata 612

                                                                       
Query: 613 tgttccattggttcgttggtcgttgtacatttgctttatcaattgctgctatcatcactg 672
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tgttccattggttcgttggtcgttgtacatttgctttatcaattgctgctatcatcactg 672

                                                                       
Query: 673 gtatggtacttcaccaagttccaaccgctgttatcatagttttctctggtgttattgctt 732
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gtatggtacttcaccaagttccaaccgctgttatcatagttttctctggtgttattgctt 732

                                                                       
Query: 733 tatactttggtgttattattttcattgaaatttataaaaaagtttatccaaatcatgtag 792
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tatactttggtgttattattttcattgaaatttataaaaaagtttatccaaatcatgtag 792

                                                              
Query: 793 atttttcacatggtggtgcaactggttatactcaaggtataaatcataatt 843
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 atttttcacatggtggtgcaactggttatactcaaggtataaatcataatt 843


>Contig-U11727-1 (Contig-U11727-1Q) /CSM_Contig/Contig-U11727-1Q.Seq.d
          Length = 1584

 Score = 36.2 bits (18), Expect = 0.063
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 763  tttataaaaaagtttatccaaa 784
            ||||||||| ||||||||||||
Sbjct: 1444 tttataaaagagtttatccaaa 1465


>Contig-U11246-1 (Contig-U11246-1Q) /CSM_Contig/Contig-U11246-1Q.Seq.d
          Length = 2635

 Score = 36.2 bits (18), Expect = 0.063
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 528  ttggtattggtttcaatt 545
            ||||||||||||||||||
Sbjct: 1833 ttggtattggtttcaatt 1816


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7413
Number of Sequences: 6905
Number of extensions: 7413
Number of successful extensions: 800
Number of sequences better than 10.0: 66
length of query: 888
length of database: 5,674,871
effective HSP length: 16
effective length of query: 872
effective length of database: 5,564,391
effective search space: 4852148952
effective search space used: 4852148952
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.15
Homology vs DNA 
Query= Contig-U09246-1 (Contig-U09246-1Q) /CSM_Contig/Contig-U09246-1Q.Seq.d
         (888 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ434810) Dictyostelium discoideum cDNA clone:ddv25d06, 3' ...   660   0.0    2
(BJ430540) Dictyostelium discoideum cDNA clone:ddv7j17, 3' e...   484   0.0    3
(BJ431303) Dictyostelium discoideum cDNA clone:ddv13n15, 3' ...   432   0.0    2
(BJ436275) Dictyostelium discoideum cDNA clone:ddv30l13, 3' ...   787   0.0    1
(BJ432287) Dictyostelium discoideum cDNA clone:ddv18b12, 3' ...   656   0.0    2
(AU053499) Dictyostelium discoideum slug cDNA, clone SLI779.      585   e-162  1
(BJ435584) Dictyostelium discoideum cDNA clone:ddv27h14, 3' ...   123   1e-51  3
(AU062261) Dictyostelium discoideum slug cDNA, clone SLI779.       64   1e-05  1
(AC194990) Pan troglodytes BAC clone CH251-551K5 from chromo...    52   0.036  1
(CU633574) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   0.48   4
(DE346582) Bombyx mori genomic DNA, BAC clone:BET_052_F19.         48   0.57   1
(DE313457) Bombyx mori genomic DNA, BAC clone:BES_096_F24.         48   0.57   1
(DE300652) Bombyx mori genomic DNA, BAC clone:BES_055_H06.         48   0.57   1
(BJ435376) Dictyostelium discoideum cDNA clone:ddv26n23, 3' ...    48   0.57   1
(BJ435256) Dictyostelium discoideum cDNA clone:ddv26f18, 3' ...    48   0.57   1
(BJ434255) Dictyostelium discoideum cDNA clone:ddv16g11, 3' ...    48   0.57   1
(BJ428735) Dictyostelium discoideum cDNA clone:ddv1e04, 3' e...    48   0.57   1
(EU048287) Tribolium madens 16S ribosomal RNA gene, partial ...    38   0.95   2
(AJ438140) Tribolium madens mitochondrion partial 16S rRNA g...    38   0.97   2
(BQ382749) kk55d07.y1 Ascaris suum male gut pAMP1 v2 Chiapel...    40   1.2    2
(ED414137) AUAC-aal66g01.g1 Ascaris suum whole genome shotgu...    40   1.5    2
(CR788247) Zebrafish DNA sequence from clone DKEY-47M24 in l...    46   2.2    1
(AP008213) Oryza sativa (japonica cultivar-group) genomic DN...    46   2.2    1
(AP003846) Oryza sativa Japonica Group genomic DNA, chromoso...    46   2.2    1
(EA697134) Sequence 76013 from patent US 7365185.                  46   2.2    1
(CT025901) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   2.2    1
(AP003927) Oryza sativa Japonica Group genomic DNA, chromoso...    46   2.2    1
(AC169943) Bos taurus clone CH240-218K21, WORKING DRAFT SEQU...    46   2.2    1
(EK220956) 1095460140514 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.2    1
(ED708206) GM_WBb0054B06.f GM_WBb Glycine max genomic clone ...    46   2.2    1
(AL161851) Human chromosome 14 DNA sequence BAC R-1078I14 of...    32   4.3    2
(CU618305) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   4.4    2
(EX630683) 255468630 Pea aphid whole body normalized full le...    36   5.6    2
(AC181379) Strongylocentrotus purpuratus clone R3-4D02, WORK...    40   6.8    4
(BX950174) Zebrafish DNA sequence from clone DKEY-219G5 in l...    44   8.9    1
(AL954307) Zebrafish DNA sequence from clone CH211-201C19.         44   8.9    1
(AM472763) Vitis vinifera contig VV78X226689.2, whole genome...    44   8.9    1
(AL161575) Arabidopsis thaliana DNA chromosome 4, contig fra...    44   8.9    1
(AL050352) Arabidopsis thaliana DNA chromosome 4, BAC clone ...    44   8.9    1
(AC144473) Medicago truncatula clone mth2-15l5, complete seq...    44   8.9    1
(AL731765) Human DNA sequence from clone RP11-268L7 on chrom...    44   8.9    1
(AC155001) Bos taurus clone CH240-30L11, WORKING DRAFT SEQUE...    44   8.9    1
(CR385032) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   8.9    1
(AC225473) Medicago truncatula clone mth2-17p19, WORKING DRA...    44   8.9    1
(ER446435) 1092963831802 Global-Ocean-Sampling_GS-35-01-01-1...    44   8.9    1
(DU688798) Bst021328 lambda03 Boechera stricta genomic clone...    44   8.9    1
(CL705318) SP__Bb0039B01.r SP__Bb Sorghum propinquum genomic...    44   8.9    1
(BX138360) Danio rerio genomic clone DKEY-99P2, genomic surv...    44   8.9    1
(AG062790) Pan troglodytes DNA, clone: PTB-051D23.R.               44   8.9    1
(DV618802) EST1221798 Glossina morsitans morsitans Fat body ...    44   8.9    1
(DV606094) EST1209090 Glossina morsitans morsitans Fat body ...    44   8.9    1
(DV603982) EST1206978 Glossina morsitans morsitans Fat body ...    44   8.9    1
(CX591105) TTE00024430 Amplicon Express - Conjugative Form T...    44   8.9    1
(BX566027) Glossina morsitans morsitans (Tseatse fly) EST fr...    44   8.9    1
(BX564262) Glossina morsitans morsitans (Tseatse fly) EST fr...    44   8.9    1
(BX555900) Glossina morsitans morsitans (Tseatse fly) EST fr...    44   8.9    1
(AP009510) Uncultured Termite group 1 bacterium phylotype Rs...    44   8.9    1

>(BJ434810) Dictyostelium discoideum cDNA clone:ddv25d06, 3' end,
           single read.
          Length = 547

 Score =  660 bits (333), Expect(2) = 0.0
 Identities = 333/333 (100%)
 Strand = Plus / Minus


Query: 183 agatttcgtttgggcacatggtcaagataattcatttggcttccatggtgttggtaatgc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 agatttcgtttgggcacatggtcaagataattcatttggcttccatggtgttggtaatgc 488


Query: 243 aggcagaaccacaagtgaatcttgccaccggtagcaccaatagtggtccagattatgtaa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aggcagaaccacaagtgaatcttgccaccggtagcaccaatagtggtccagattatgtaa 428


Query: 303 attggcatgcaagtttaatgttggttgcatttggtttattgatgccattcagtattttca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 attggcatgcaagtttaatgttggttgcatttggtttattgatgccattcagtattttca 368


Query: 363 gtgcccgtttcttaaaagttttccactggtggtggccacttcattacgttttcaatggtt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gtgcccgtttcttaaaagttttccactggtggtggccacttcattacgttttcaatggtt 308


Query: 423 tggcatcagtttgcgctttaattggcttcatcatcgcaattgtcatgttggatggtttgg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tggcatcagtttgcgctttaattggcttcatcatcgcaattgtcatgttggatggtttgg 248


Query: 483 atttctctacacttcatagtatttttggtataa 515
           |||||||||||||||||||||||||||||||||
Sbjct: 247 atttctctacacttcatagtatttttggtataa 215

 Score =  422 bits (213), Expect(2) = 0.0
 Identities = 213/213 (100%)
 Strand = Plus / Minus


Query: 518 tacattatgtttggtattggtttcaattctatttggtgcactttcttacttcctttggaa 577
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tacattatgtttggtattggtttcaattctatttggtgcactttcttacttcctttggaa 154


Query: 578 accaactagagttggtactccaattttccctgatatgttccattggttcgttggtcgttg 637
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 accaactagagttggtactccaattttccctgatatgttccattggttcgttggtcgttg 94


Query: 638 tacatttgctttatcaattgctgctatcatcactggtatggtacttcaccaagttccaac 697
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  tacatttgctttatcaattgctgctatcatcactggtatggtacttcaccaagttccaac 34


Query: 698 cgctgttatcatagttttctctggtgttattgc 730
           |||||||||||||||||||||||||||||||||
Sbjct: 33  cgctgttatcatagttttctctggtgttattgc 1

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 772,626,136
Number of extensions: 43915901
Number of successful extensions: 3362158
Number of sequences better than 10.0: 57
Length of query: 888
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 864
Effective length of database: 97,308,875,965
Effective search space: 84074868833760
Effective search space used: 84074868833760
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.25
Homology vs Protein 
Query= Contig-U09246-1 (Contig-U09246-1Q) /CSM_Contig/Contig-U09246-1Q.Seq.d
         (888 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM486046_2(AM486046|pid:none) Vitis vinifera contig VV78X042566....    54   5e-08
AB005232_9(AB005232|pid:none) Arabidopsis thaliana genomic DNA, ...    52   3e-05
AC148482_10(AC148482|pid:none) Medicago truncatula clone mth2-36...    39   6e-05
AP003407_38(AP003407|pid:none) Oryza sativa Japonica Group genom...    48   4e-04
AP003316_19(AP003316|pid:none) Oryza sativa Japonica Group genom...    48   4e-04
EU955886_1(EU955886|pid:none) Zea mays clone 1550443 membrane pr...    47   0.001
BT038895_1(BT038895|pid:none) Zea mays full-length cDNA clone ZM...    43   0.012
AP008215_1032(AP008215|pid:none) Oryza sativa (japonica cultivar...    43   0.012
AP005453_5(AP005453|pid:none) Oryza sativa Japonica Group genomi...    43   0.016
CP001325_431(CP001325|pid:none) Micromonas sp. RCC299 chromosome...    42   0.027
EU972682_1(EU972682|pid:none) Zea mays clone 385896 unknown mRNA.      42   0.036
FB926899_1(FB926899|pid:none) Sequence 146172 from Patent WO2008...    42   0.036
AK058714_1(AK058714|pid:none) Oryza sativa Japonica Group cDNA c...    41   0.047
FB926857_1(FB926857|pid:none) Sequence 146130 from Patent WO2008...    41   0.047
EF147130_1(EF147130|pid:none) Populus trichocarpa clone WS01228_...    40   0.080
AM260479_2933(AM260479|pid:none) Ralstonia eutropha H16 chromoso...    40   0.080
EF526299_1(EF526299|pid:none) Neoceratodus forsteri SWS2 opsin m...    40   0.14
AJ309299_1(AJ309299|pid:none) Solanum tuberosum mRNA for putativ...    39   0.18
AJ309302_1(AJ309302|pid:none) Solanum tuberosum poni1b gene for ...    39   0.18
AL163527_12(AL163527|pid:none) Arabidopsis thaliana DNA chromoso...    39   0.23
AY087174_1(AY087174|pid:none) Arabidopsis thaliana clone 32450 m...    39   0.30
AM450804_1(AM450804|pid:none) Vitis vinifera contig VV78X211850....    32   0.34
AM483129_3(AM483129|pid:none) Vitis vinifera contig VV78X082964....    37   0.68
AM439060_1(AM439060|pid:none) Vitis vinifera contig VV78X262772....    37   0.68
EF146296_1(EF146296|pid:none) Populus trichocarpa clone WS0116_O...    37   0.88
(Q1I2L0) RecName: Full=Cardiolipin synthetase;          EC=2.7.8...    37   1.2
AC183495_19(AC183495|pid:none) Brassica oleracea Contig A, compl...    36   1.5
AJ309300_1(AJ309300|pid:none) Solanum tuberosum mRNA for putativ...    36   1.5
AB025628_12(AB025628|pid:none) Arabidopsis thaliana genomic DNA,...    36   2.0
EF584002_19(EF584002|pid:none) Uncultured haloarchaeon clone fos...    36   2.0
AB158256_1(AB158256|pid:none) Girella punctata mRNA for blue ops...    36   2.0
CP000076_253(CP000076|pid:none) Pseudomonas fluorescens Pf-5, co...    36   2.0
AB026647_25(AB026647|pid:none) Arabidopsis thaliana genomic DNA,...    33   2.1
AC157375_30(AC157375|pid:none) Medicago truncatula chromosome 2 ...    35   2.6
AC147406_8(AC147406|pid:none) Medicago truncatula clone mth2-154...    35   2.6
(Q9W6A8) RecName: Full=Opsin-1, short-wave-sensitive 2; AltName:...    35   2.6
AK241329_1(AK241329|pid:none) Oryza sativa Japonica Group cDNA, ...    35   2.6
DQ354580_1(DQ354580|pid:none) Acanthopagrus butcheri short-wave ...    35   3.4
AB290450_1(AB290450|pid:none) Thunnus orientalis BFT-SWS2 mRNA f...    35   3.4
EU972613_1(EU972613|pid:none) Zea mays clone 384412 membrane pro...    35   3.4
CP001390_666(CP001390|pid:none) Geobacter sp. FRC-32, complete g...    35   3.4
DQ235679_1(DQ235679|pid:none) Synthetic construct violet-sensiti...    35   3.4
EU029161_9(EU029161|pid:none) Chorthippus chinensis mitochondrio...    35   3.4
FJ711152_1(FJ711152|pid:none) Anableps anableps SWS2A opsin mRNA...    35   3.4
CU640366_197(CU640366|pid:none) Podospora anserina genomic DNA c...    35   4.4
AC104709_7(AC104709|pid:none) Oryza sativa (japonica cultivar-gr...    35   4.4
EU296405_3(EU296405|pid:none) Escherichia coli serogroup O112ac ...    35   4.4
(P51472) RecName: Full=Blue-sensitive opsin; AltName: Full=Blue ...    35   4.4
AY775073_1(AY775073|pid:none) Tropheus duboisi short wavelength ...    34   5.7
AY660538_1(AY660538|pid:none) Astatotilapia burtoni putative blu...    34   5.7
AY775077_1(AY775077|pid:none) Lethrinops parvidens short wavelen...    34   5.7
DQ088638_1(DQ088638|pid:none) Tramitichromis intermedius putativ...    34   5.7
EU958054_1(EU958054|pid:none) Zea mays clone 1670693 membrane pr...    34   5.7
AY775081_1(AY775081|pid:none) Labidochromis chisumulae short wav...    34   5.7
AY673718_1(AY673718|pid:none) Pundamilia nyererei putative blue ...    34   5.7
DQ235680_1(DQ235680|pid:none) Synthetic construct blue-sensitive...    34   5.7
AB448641_1(AB448641|pid:none) Pundamilia nyererei SWS2A gene for...    34   5.7
CP001404_2706(CP001404|pid:none) Sulfolobus islandicus Y.N.15.51...    34   5.7
CP001402_2597(CP001402|pid:none) Sulfolobus islandicus M.16.4, c...    34   5.7
AY775074_1(AY775074|pid:none) Aulonocara hueseri short wavelengt...    34   5.7
AY775075_1(AY775075|pid:none) Mylochromis lateristriga short wav...    34   5.7
AF247113_1(AF247113|pid:none) Dimidiochromis compressiceps putat...    34   5.7
AB448598_1(AB448598|pid:none) Pundamilia pundamilia SWS2A gene f...    34   5.7
AY775078_1(AY775078|pid:none) Tyrannochromis maculatus short wav...    34   5.7
AF247115_1(AF247115|pid:none) Labeotropheus fuelleborni putative...    34   5.7
AY775079_1(AY775079|pid:none) Cynotilapia afra short wavelength ...    34   5.7
AF247116_1(AF247116|pid:none) Oreochromis niloticus putative blu...    34   5.7
CP001399_2598(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,...    34   5.7
AL670009_13(AL670009|pid:none) Neurospora crassa DNA linkage gro...    34   5.7
AY775061_1(AY775061|pid:none) Copadichromis borleyi short wavele...    34   5.7
AB448645_1(AB448645|pid:none) Pundamilia nyererei SWS2A gene for...    34   5.7
CT005258_160(CT005258|pid:none) Leishmania major strain Friedlin...    30   5.7
BC081611_1(BC081611|pid:none) Danio rerio zgc:92159, mRNA (cDNA ...    34   7.5
CP000608_1473(CP000608|pid:none) Francisella tularensis subsp. t...    34   7.5
AM233362_145(AM233362|pid:none) Francisella tularensis subsp. ho...    34   7.5
CP000439_140(CP000439|pid:none) Francisella tularensis subsp. no...    34   7.5
AF522293_1(AF522293|pid:none) Streptococcus canis phage phisc1 m...    34   7.5
AP009493_5756(AP009493|pid:none) Streptomyces griseus subsp. gri...    34   7.5
DQ088639_1(DQ088639|pid:none) Pseudotropheus acei putative viole...    34   7.5
CP000915_1285(CP000915|pid:none) Francisella tularensis subsp. m...    34   7.5
AE006641_2425(AE006641|pid:none) Sulfolobus solfataricus P2, com...    34   7.5
(P32310) RecName: Full=Blue-sensitive opsin; AltName: Full=Blue ...    34   7.5
AP008957_1453(AP008957|pid:none) Rhodococcus erythropolis PR4 DN...    33   9.8
(Q88C19) RecName: Full=Cardiolipin synthetase;          EC=2.7.8...    33   9.8
AF316497_1(AF316497|pid:none) Hippoglossus hippoglossus blue ops...    33   9.8
CR936257_667(CR936257|pid:none) Natronomonas pharaonis DSM 2160 ...    33   9.8
BT067831_1(BT067831|pid:none) Zea mays full-length cDNA clone ZM...    33   9.8
AY960982_1(AY960982|pid:none) Pseudomonas putida strain DOT-T1E ...    33   9.8
AP004363_14(AP004363|pid:none) Oryza sativa Japonica Group genom...    33   9.8
EF437157_9(EF437157|pid:none) Oxya chinensis mitochondrion, comp...    33   9.8
(P87365) RecName: Full=Blue-sensitive opsin; AltName: Full=Blue ...    33   9.8
AY775065_1(AY775065|pid:none) Copadichromis borleyi short wavele...    33   9.8
AY775084_1(AY775084|pid:none) Melanochromis auratus short wavele...    33   9.8
FJ386647_4(FJ386647|pid:none) Hepatitis B virus isolate 2400, co...    33   9.8
FJ386647_3(FJ386647|pid:none) Hepatitis B virus isolate 2400, co...    33   9.8

>AM486046_2(AM486046|pid:none) Vitis vinifera contig VV78X042566.6,
            whole genome shotgun sequence.
          Length = 1004

 Score = 53.5 bits (127), Expect(2) = 5e-08
 Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 4/76 (5%)
 Frame = +2

Query: 308  HASLMLVAFGLLMPFSIFSARFLKVFHW--WWPLHYV--FNGLASVCALIGFIIAIVMLD 475
            H  +M +A+G+L+P  I +AR+LK      W+ +H    ++GLA V  L+GF+ A+  L
Sbjct: 789  HGFMMFLAWGILLPGGILAARYLKHVKGDGWFQIHVYLQYSGLAIV--LLGFLFAVAELR 846

Query: 476  GLDFSTLHSIFGITYI 523
            G  FS+LH  FGIT I
Sbjct: 847  GFYFSSLHVKFGITAI 862

 Score = 27.3 bits (59), Expect(2) = 5e-08
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 609 DMFHWFVGRCTFALSIAAIITGM 677
           +  H  VGRC     IAA+I+GM
Sbjct: 893 EYLHVIVGRCAIVAGIAALISGM 915

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,364,646,731
Number of extensions: 29224254
Number of successful extensions: 89526
Number of sequences better than 10.0: 95
Number of HSP's gapped: 89440
Number of HSP's successfully gapped: 100
Length of query: 296
Length of database: 1,040,966,779
Length adjustment: 127
Effective length of query: 169
Effective length of database: 634,022,584
Effective search space: 107149816696
Effective search space used: 107149816696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.33  alm: 0.62  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U09246-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 6
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0