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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U09230-1
Contig ID Contig-U09230-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U09230-1 (Contig-U09230-1Q) /CSM_Contig/Contig-U09230-1Q.Seq.d
AAATTAAAAAAACATATTACACATTTGCACAAATTTATTTTACAAAATCA
CAAATCAATAATAATAATAATAATAATAATACTAATAATAATAGAATAAA
TATTAAATAAAAATTTTATATATAAAAAAAAAGAAAAAAAAAAAAAAAAA
AAAGAAAGAATCTATTTTTAAATAATGTCATTATCTTCATCAGTTTCAAT
TTCACCATCTATTTCTTCATCATCAATATCAAATAATAGAAATAGTCGTG
ATTTAGAAGATAAATATGGAGATTCAGTTGTATTTCCATGTCCCTCAAAA
TTTGAAAAAATAATTCCATTAGATGAAAGATATATAACACATGCAACTTT
TTTAAAAAATAAATCTTCAGAAACAACATTTATTGGATTATTAACATCAA
ACAGGTTTTATAAAGTGGATTCAGATACATTAAAAAAGATATGGTCAATA
GATTTATTTGATATGCATTCAATAGAGGGAGATGAATCACCAGATCCAAA
GACATTAAGAATTGTATATCATGTAAAACAAACACCATCATTAGTTGGTG
GATTAGTGAGTGGTGGTGGTGGTAGTAATGGTAATCATAATGGCGGTGGT
GGTTTTGAT----------TTATATATCAGAGCAAATATTTATAACAGAG
TCAGAGGAAATCAGGGATCAGTGGTTGGTTTCATTACGTTTATTAACTAG
ACAAACATTTCAAAAATATTTTGAATCAACATTTATACCGGCTCCTGCAA
TTTATCAACTTCACATCTATGCATATAAAACCAATAGAAAAGGTAAGAAT
CAAATTAGATGTATATTGGTCTCAACTGAAAGATGCTACAATATCAGTAT
CAAAACTCCCTCTTTAGAAATTGGAAAAGTAAAATGGAGTTTTCCAATAG
CTGCTCTAAAAACTCTTCAAGTATTCAAATCTGCTCCAAATATTTTAGTA
TTAACTTTAGATAATAAGGAAAATTCAAAAGTTAAAGAAGTTCAACAATT
TATATTAAAAGATTTAATTGAAAGAAATTTATTAACCAATGAATTAAGAA
GAATTTATGCAAAATTAACAAAACAATCATTAACAAAAGATGAAAAAGAT
GAACTACCAAAAAAATTTGGAAAAGGAAAGTAAAATTAACAAATAAAAAA
AATTAAATAAAACTATTGTATAAATTATTTTCTAAAAAA
Gap gap included
Contig length 1179
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 6697269
End point 6696098
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U09230
List of clone(s) 

est1=SLH822F,1,610
est2=SLH822Z,611,1181
Translated Amino Acid sequence 
klkkhithlhkfilqnhksiiiiiiiiliiie*ilnknfiykkkekkkkkkeriyf*IMS
LSSSVSISPSISSSSISNNRNSRDLEDKYGDSVVFPCPSKFEKIIPLDERYITHATFLKN
KSSETTFIGLLTSNRFYKVDSDTLKKIWSIDLFDMHSIEGDESPDPKTLRIVYHVKQTPS
LVGGLVSGGGGSNGNHNGGGGFD---

---YISEQIFITESEEIRDQWLVSLRLLTRQTFQKYFESTFIPAPAIYQLHIYAYKTNRK
GKNQIRCILVSTERCYNISIKTPSLEIGKVKWSFPIAALKTLQVFKSAPNILVLTLDNKE
NSKVKEVQQFILKDLIERNLLTNELRRIYAKLTKQSLTKDEKDELPKKFGKGK*n*qikk
ik*nycinyflk
Translated Amino Acid sequence (All Frames) 
Frame A:
klkkhithlhkfilqnhksiiiiiiiiliiie*ilnknfiykkkekkkkkkeriyf*IMS
LSSSVSISPSISSSSISNNRNSRDLEDKYGDSVVFPCPSKFEKIIPLDERYITHATFLKN
KSSETTFIGLLTSNRFYKVDSDTLKKIWSIDLFDMHSIEGDESPDPKTLRIVYHVKQTPS
LVGGLVSGGGGSNGNHNGGGGFD---

---lyiraniynrvrgnqgsvvgfitfin*tniskif*iniytgscnlstshlci*nq*k
r*esn*myigln*kmlqyqyqnslfrnwkskmefsnscsknsssiqicskyfsinfr**g
kfks*rsstiyikrfn*kkfinq*ikknlckinktiinkr*kr*ttkkiwkrkvkltnkk
n*ikllyklfskk

Frame B:
n*knilhictnlfykitnq*******y****nky*ikilyikkkkkkkkkkkesifk*ch
ylhqfqfhhlflhhqyqiieivvi*kinmeiqlyfhvpqnlkk*fh*mkdi*hmqlf*ki
nlqkqhlldy*hqtgfikwiqih*krygq*iyliciq*remnhqiqrh*elyim*nkhhh
*lvd**vvvvvvmviimavvvl---

---YISEQIFITESEEIRDQWLVSLRLLTRQTFQKYFESTFIPAPAIYQLHIYAYKTNRK
GKNQIRCILVSTERCYNISIKTPSLEIGKVKWSFPIAALKTLQVFKSAPNILVLTLDNKE
NSKVKEVQQFILKDLIERNLLTNELRRIYAKLTKQSLTKDEKDELPKKFGKGK*n*qikk
ik*nycinyflk

Frame C:
ikktyytfaqiyftksqinnnnnnnntnnnrinik*kfyi*kkrkkkkkkrknlflnnvi
ifisfnftiyffiinik**k*s*frr*iwrfscismslki*knnsir*kiyntcnffkk*
ifrnniywiinikqvl*sgfryikkdmvnrfi*yafnrgr*itrskdiknciscktntii
swwisewwww**w*s*wrwwf*---

---iyqskyl*qsqrksgisgwfhyvy*ldkhfknilnqhlyrllqfinftsmhikpiek
vrikldvywsqlkdatisvsklpl*klek*ngvfq*ll*klfkysnllqif*y*l*iirk
iqklkkfnnly*ki*lkeiy*pmn*eefmqn*qnnh*qkmkkmnyqknlekeskink*kk
lnktiv*iif*k
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U09230-1 (Contig-U09230-1Q)
/CSM_Contig/Contig-U09230-1Q.Seq.d
         (1189 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09230-1 (Contig-U09230-1Q) /CSM_Contig/Conti...  1782  0.0
Contig-U13643-1 (Contig-U13643-1Q) /CSM_Contig/Conti...    52  1e-06
Contig-U11324-1 (Contig-U11324-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U11477-1 (Contig-U11477-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U03720-1 (Contig-U03720-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U13460-1 (Contig-U13460-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U11982-1 (Contig-U11982-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U07394-1 (Contig-U07394-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U12744-1 (Contig-U12744-1Q) /CSM_Contig/Conti...    38  0.021
Contig-U11661-1 (Contig-U11661-1Q) /CSM_Contig/Conti...    38  0.021

>Contig-U09230-1 (Contig-U09230-1Q) /CSM_Contig/Contig-U09230-1Q.Seq.d
          Length = 1189

 Score = 1782 bits (899), Expect = 0.0
 Identities = 929/929 (100%)
 Strand = Plus / Plus

                                                                        
Query: 154  gaaagaatctatttttaaataatgtcattatcttcatcagtttcaatttcaccatctatt 213
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154  gaaagaatctatttttaaataatgtcattatcttcatcagtttcaatttcaccatctatt 213

                                                                        
Query: 214  tcttcatcatcaatatcaaataatagaaatagtcgtgatttagaagataaatatggagat 273
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214  tcttcatcatcaatatcaaataatagaaatagtcgtgatttagaagataaatatggagat 273

                                                                        
Query: 274  tcagttgtatttccatgtccctcaaaatttgaaaaaataattccattagatgaaagatat 333
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274  tcagttgtatttccatgtccctcaaaatttgaaaaaataattccattagatgaaagatat 333

                                                                        
Query: 334  ataacacatgcaacttttttaaaaaataaatcttcagaaacaacatttattggattatta 393
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334  ataacacatgcaacttttttaaaaaataaatcttcagaaacaacatttattggattatta 393

                                                                        
Query: 394  acatcaaacaggttttataaagtggattcagatacattaaaaaagatatggtcaatagat 453
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394  acatcaaacaggttttataaagtggattcagatacattaaaaaagatatggtcaatagat 453

                                                                        
Query: 454  ttatttgatatgcattcaatagagggagatgaatcaccagatccaaagacattaagaatt 513
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454  ttatttgatatgcattcaatagagggagatgaatcaccagatccaaagacattaagaatt 513

                                                                        
Query: 514  gtatatcatgtaaaacaaacaccatcattagttggtggattagtgagtggtggtggtggt 573
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514  gtatatcatgtaaaacaaacaccatcattagttggtggattagtgagtggtggtggtggt 573

                                                                        
Query: 574  agtaatggtaatcataatggcggtggtggttttgatnnnnnnnnnnttatatatcagagc 633
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574  agtaatggtaatcataatggcggtggtggttttgatnnnnnnnnnnttatatatcagagc 633

                                                                        
Query: 634  aaatatttataacagagtcagaggaaatcagggatcagtggttggtttcattacgtttat 693
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634  aaatatttataacagagtcagaggaaatcagggatcagtggttggtttcattacgtttat 693

                                                                        
Query: 694  taactagacaaacatttcaaaaatattttgaatcaacatttataccggctcctgcaattt 753
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694  taactagacaaacatttcaaaaatattttgaatcaacatttataccggctcctgcaattt 753

                                                                        
Query: 754  atcaacttcacatctatgcatataaaaccaatagaaaaggtaagaatcaaattagatgta 813
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754  atcaacttcacatctatgcatataaaaccaatagaaaaggtaagaatcaaattagatgta 813

                                                                        
Query: 814  tattggtctcaactgaaagatgctacaatatcagtatcaaaactccctctttagaaattg 873
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814  tattggtctcaactgaaagatgctacaatatcagtatcaaaactccctctttagaaattg 873

                                                                        
Query: 874  gaaaagtaaaatggagttttccaatagctgctctaaaaactcttcaagtattcaaatctg 933
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874  gaaaagtaaaatggagttttccaatagctgctctaaaaactcttcaagtattcaaatctg 933

                                                                        
Query: 934  ctccaaatattttagtattaactttagataataaggaaaattcaaaagttaaagaagttc 993
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934  ctccaaatattttagtattaactttagataataaggaaaattcaaaagttaaagaagttc 993

                                                                        
Query: 994  aacaatttatattaaaagatttaattgaaagaaatttattaaccaatgaattaagaagaa 1053
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994  aacaatttatattaaaagatttaattgaaagaaatttattaaccaatgaattaagaagaa 1053

                                         
Query: 1054 tttatgcaaaattaacaaaacaatcatta 1082
            |||||||||||||||||||||||||||||
Sbjct: 1054 tttatgcaaaattaacaaaacaatcatta 1082


 Score = 87.7 bits (44), Expect = 3e-17
 Identities = 44/44 (100%)
 Strand = Plus / Plus

                                                      
Query: 13 catattacacatttgcacaaatttattttacaaaatcacaaatc 56
          ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 catattacacatttgcacaaatttattttacaaaatcacaaatc 56


 Score = 73.8 bits (37), Expect = 4e-13
 Identities = 37/37 (100%)
 Strand = Plus / Plus

                                                 
Query: 1153 ttaaataaaactattgtataaattattttctaaaaaa 1189
            |||||||||||||||||||||||||||||||||||||
Sbjct: 1153 ttaaataaaactattgtataaattattttctaaaaaa 1189


 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 103 ttaaataaaaattttatatat 123
           |||||||||||||||||||||
Sbjct: 103 ttaaataaaaattttatatat 123


>Contig-U13643-1 (Contig-U13643-1Q) /CSM_Contig/Contig-U13643-1Q.Seq.d
          Length = 603

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                         
Query: 560 gtggtggtggtggtagtaatggtaatcataatggcggtggtggttt 605
           ||||||||| |||||| |||||||||  |||||| |||||||||||
Sbjct: 454 gtggtggtgttggtagcaatggtaatggtaatggtggtggtggttt 499


 Score = 30.2 bits (15), Expect = 5.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 559 agtggtggtggtggt 573
           |||||||||||||||
Sbjct: 444 agtggtggtggtggt 458


>Contig-U11324-1 (Contig-U11324-1Q) /CSM_Contig/Contig-U11324-1Q.Seq.d
          Length = 1374

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 216 ttcatcatcaatatcaaataat 237
           ||||||||||||||||||||||
Sbjct: 761 ttcatcatcaatatcaaataat 782


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,276
Number of Sequences: 6905
Number of extensions: 26276
Number of successful extensions: 3637
Number of sequences better than 10.0: 521
length of query: 1189
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1173
effective length of database: 5,564,391
effective search space: 6527030643
effective search space used: 6527030643
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.15
Homology vs DNA 
Query= Contig-U09230-1 (Contig-U09230-1Q) /CSM_Contig/Contig-U09230-1Q.Seq.d
         (1189 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AF079444) Dictyostelium discoideum TipB (tipB) gene, comple...   906   0.0    4
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595...   813   0.0    5
(AU039457) Dictyostelium discoideum slug cDNA, clone SLH822.      922   0.0    1
(AU062152) Dictyostelium discoideum slug cDNA, clone SLH822.      777   0.0    2
(AE017308) Mycoplasma mobile 163K complete genome.                 36   0.001  17
(CR548612) Paramecium tetraurelia macronuclear largest chrom...    38   0.005  17
(CP000939) Clostridium botulinum B1 str. Okra, complete genome.    40   0.011  17
(EK351377) 1095467954566 Global-Ocean-Sampling_GS-31-01-01-1...    44   0.013  3
(AM428393) Vitis vinifera contig VV78X255378.7, whole genome...    40   0.037  3
(AC182687) Populus trichocarpa clone Pop1-39C16, complete se...    40   0.084  7
(AQ954033) nbeb0053J18f CUGI Rice BAC Library (EcoRI) Oryza ...    32   0.12   3
(BX901849) Oryza sativa  cDNA clone:p640a09p3.                     32   0.33   3
(AC140847) Homo sapiens 12 BAC RP11-313F23 (Roswell Park Can...    42   0.55   3
(AC215484) Solanum lycopersicum chromosome 2 clone C02SLm006...    32   0.61   9
(CP000716) Thermosipho melanesiensis BI429, complete genome.       36   0.69   21
(AC208999) Populus trichocarpa clone POP021-B12, complete se...    36   0.74   9
(CT583651) Zebrafish DNA sequence from clone CH211-261N11 in...    48   0.77   1
(BX000486) Zebrafish DNA sequence from clone DKEY-149M16 in ...    48   0.77   1
(AC165412) Mus musculus chromosome 3, clone RP24-161M18, com...    48   0.77   1
(AC138585) Mus musculus chromosome 3, clone RP23-174P13, com...    48   0.77   1
(AM434316) Vitis vinifera contig VV78X278108.32, whole genom...    48   0.77   1
(CU856182) H.numata DNA sequence from clone AEHN-24I10.            48   0.77   1
(CU638865) H.numata DNA sequence from clone AEHN-45B17.            48   0.77   1
(AC110207) Mus musculus clone RP23-397D11, LOW-PASS SEQUENCE...    48   0.77   1
(BA000023) Sulfolobus tokodaii str. 7 DNA, complete genome.        48   0.77   1
(ET983586) CHO_OF699xp08f1.ab1 CHO_OF Nicotiana tabacum geno...    36   0.84   2
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    34   0.90   18
(AM422018) Candidatus Phytoplasma australiense complete genome.    38   0.97   16
(CP000361) Arcobacter butzleri RM4018, complete genome.            34   1.0    19
(BX769173) Zebrafish DNA sequence from clone DKEY-62J22 in l...    40   1.0    6
(AC069550) Sequence of chromosome 2 clone RP11-471B2 contain...    36   1.1    7
(AC126013) Medicago truncatula clone mth2-32e10, complete se...    38   1.3    6
(AM452721) Vitis vinifera contig VV78X111901.6, whole genome...    32   1.4    4
(AC183224) Bos taurus clone CH240-102D7, WORKING DRAFT SEQUE...    32   1.5    2
(AC167220) Bos taurus clone CH240-174G17, WORKING DRAFT SEQU...    32   1.6    2
(AM435860) Vitis vinifera, whole genome shotgun sequence, co...    30   1.6    6
(CR392361) Zebrafish DNA sequence from clone DKEY-73H23 in l...    38   1.6    9
(EL504420) C09_3163_33.AB1 Blood stage Plasmodium falciparum...    32   1.9    3
(AC062020) Homo sapiens BAC clone RP11-154O23 from 2, comple...    34   1.9    10
(EJ478090) 1095403453333 Global-Ocean-Sampling_GS-28-01-01-1...    34   2.0    3
(ES564223) TPAF-aab15b04.g1 T.spiralis_EST Trichinella spira...    32   2.1    2
(BY925930) Bombyx mori cDNA, clone:E_ET_F1mg_03E04_R_0, 3' e...    32   2.1    2
(CK500526) rswbb0_011586.y1 swb Bombyx mori cDNA, mRNA seque...    32   2.1    2
(CK500563) rswbb0_011634.y1 swb Bombyx mori cDNA, mRNA seque...    32   2.1    2
(ES565138) TPAF-aab82a11.g1 T.spiralis_EST Trichinella spira...    32   2.1    2
(ES565588) TPAF-aaa99e08.g1 T.spiralis_EST Trichinella spira...    32   2.1    2
(ES566054) TPAF-aab44a03.g1 T.spiralis_EST Trichinella spira...    32   2.1    2
(AM970483) Sparus aurata EST, clone cDN10P0002P03, 5'-end se...    34   2.1    2
(ES562429) TPAF-aab52g05.g1 T.spiralis_EST Trichinella spira...    32   2.1    2
(BG519847) ps02d06.y2 Trichinella spiralis ML CMVsport jasme...    32   2.1    2
(M32882) Plasmid pIP404 (from Clostridium perfringens), comp...    46   2.2    2
(U22023) Mycoplasma hominis SC4 clone 3 P120 (p120) gene, pa...    36   2.3    3
(AC068639) Homo sapiens chromosome 3 clone RP11-410A20, WORK...    42   2.3    8
(CU442707) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   2.6    6
(AC172318) Strongylocentrotus purpuratus clone R3-14F24, WOR...    40   2.7    6
(EJ917507) 1093018572870 Global-Ocean-Sampling_GS-30-02-01-1...    36   2.7    2
(AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    34   2.7    12
(AF025453) Caenorhabditis elegans cosmid C08F1, complete seq...    46   3.0    3
(BX927293) Zebrafish DNA sequence from clone DKEY-95H12 in l...    46   3.0    1
(BX119988) Zebrafish DNA sequence from clone CH211-184L6 in ...    46   3.0    1
(AC166344) Mus musculus BAC clone RP24-63B17 from chromosome...    46   3.0    1
(AC166080) Mus musculus BAC clone RP23-3N5 from chromosome 1...    46   3.0    1
(AC165144) Mus musculus BAC clone RP24-441D9 from chromosome...    46   3.0    1
(AC160336) Mus musculus BAC clone RP23-48M16 from chromosome...    46   3.0    1
(AC127230) Mus musculus BAC clone RP24-553G19 from chromosom...    46   3.0    1
(AC101945) Mus musculus chromosome 15, clone RP24-123O20, co...    46   3.0    1
(AM475567) Vitis vinifera contig VV78X125217.7, whole genome...    46   3.0    1
(CS452619) Sequence 19 from Patent WO2006119494.                   46   3.0    1
(CS452618) Sequence 18 from Patent WO2006119494.                   46   3.0    1
(CS452617) Sequence 17 from Patent WO2006119494.                   46   3.0    1
(AY016295) Homo sapiens type V preprocollagen alpha 2 chain ...    46   3.0    1
(AC133106) Homo sapiens BAC clone RP11-634B17 from 2, comple...    46   3.0    1
(AC130335) Homo sapiens chromosome 8, clone RP13-944D21, com...    46   3.0    1
(AC103785) Homo sapiens chromosome 8, clone RP11-727C12, com...    46   3.0    1
(AC162733) Loxodonta africana clone VMRC15-183K13, WORKING D...    46   3.0    1
(CR855329) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   3.0    1
(BH056376) RPCI-24-248M9.TV RPCI-24 Mus musculus genomic clo...    46   3.0    1
(AZ896887) RPCI-24-185B2.TV RPCI-24 Mus musculus genomic clo...    46   3.0    1
(AZ016017) RPCI-23-290C23.TV RPCI-23 Mus musculus genomic cl...    46   3.0    1
(ER684997) SB_BBc234-N03.F SB_BBc Sorghum bicolor genomic 5'...    46   3.0    1
(ER493410) 1093015338046 Global-Ocean-Sampling_GS-35-01-01-1...    46   3.0    1
(ER368463) 1093022152345 Global-Ocean-Sampling_GS-34-01-01-1...    46   3.0    1
(ER363264) 1093018906303 Global-Ocean-Sampling_GS-34-01-01-1...    46   3.0    1
(CR226059) Forward strand read from insert in 5'HPRT inserti...    46   3.0    1
(DB770667) Apis mellifera head cDNA, RIKEN full-length enric...    46   3.0    1
(CA519185) KS10021H08 KS10 Capsicum annuum cDNA, mRNA sequence.    46   3.0    1
(FM009077) Dicentrarchus labrax EST, clone cDN26P0002B05, 5'...    46   3.0    1
(FM000361) Dicentrarchus labrax EST, clone cDN22P0001P21, 5'...    46   3.0    1
(M32817) Plasmid pIP404 (from Clostridium perfringens) repli...    46   3.0    1
(CP000742) Methanococcus vannielii SB, complete genome.            38   3.1    15
(EJ753677) 1092963057849 Global-Ocean-Sampling_GS-30-02-01-1...    42   3.2    2
(EJ048285) 1095454131234 Global-Ocean-Sampling_GS-26-01-01-1...    36   3.3    2
(BX957263) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   3.3    6
(EJ904532) 1093018506002 Global-Ocean-Sampling_GS-30-02-01-1...    36   3.3    2
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    36   3.3    18
(AL935265) Zebrafish DNA sequence from clone DKEY-66M24.           40   3.3    6
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    32   3.4    14
(CP000768) Campylobacter jejuni subsp. doylei 269.97, comple...    34   3.4    18
(EK118672) 1092963293096 Global-Ocean-Sampling_GS-31-01-01-1...    38   3.4    2
(AC012259) Homo sapiens clone RP11-298I6, WORKING DRAFT SEQU...    30   3.5    11

>(AF079444) Dictyostelium discoideum TipB (tipB) gene, complete cds.
          Length = 1513

 Score =  906 bits (457), Expect(4) = 0.0
 Identities = 463/465 (99%)
 Strand = Plus / Plus


Query: 620  ttatatatcagagcaaatatttataacagagtcagaggaaatcagggatcagtggttggt 679
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976  ttatatatcagagaaaatatttataacagagtcagaggaaatcagggatcagtggttggt 1035


Query: 680  ttcattacgtttattaactagacaaacatttcaaaaatattttgaatcaacatttatacc 739
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 ttcattacgtttattaactagacaaacatttcaaaaatattttgaatcaacatttatacc 1095


Query: 740  ggctcctgcaatttatcaacttcacatctatgcatataaaaccaatagaaaaggtaagaa 799
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1096 ggctcctgcaatttatcaacttcacatctatgcatataaaaccaatagaaaaggtaagaa 1155


Query: 800  tcaaattagatgtatattggtctcaactgaaagatgctacaatatcagtatcaaaactcc 859
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1156 tcaaattagatgtatattggtctcaactgaaagatgctacaatatcagtatcaaaactcc 1215


Query: 860  ctctttagaaattggaaaagtaaaatggagttttccaatagctgctctaaaaactcttca 919
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1216 ctctttagaaattggaaaagtaaaatggggttttccaatagctgctctaaaaactcttca 1275


Query: 920  agtattcaaatctgctccaaatattttagtattaactttagataataaggaaaattcaaa 979
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1276 agtattcaaatctgctccaaatattttagtattaactttagataataaggaaaattcaaa 1335


Query: 980  agttaaagaagttcaacaatttatattaaaagatttaattgaaagaaatttattaaccaa 1039
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1336 agttaaagaagttcaacaatttatattaaaagatttaattgaaagaaatttattaaccaa 1395


Query: 1040 tgaattaagaagaatttatgcaaaattaacaaaacaatcattaac 1084
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1396 tgaattaagaagaatttatgcaaaattaacaaaacaatcattaac 1440

 Score =  430 bits (217), Expect(4) = 0.0
 Identities = 217/217 (100%)
 Strand = Plus / Plus


Query: 154 gaaagaatctatttttaaataatgtcattatcttcatcagtttcaatttcaccatctatt 213
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 gaaagaatctatttttaaataatgtcattatcttcatcagtttcaatttcaccatctatt 204


Query: 214 tcttcatcatcaatatcaaataatagaaatagtcgtgatttagaagataaatatggagat 273
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tcttcatcatcaatatcaaataatagaaatagtcgtgatttagaagataaatatggagat 264


Query: 274 tcagttgtatttccatgtccctcaaaatttgaaaaaataattccattagatgaaagatat 333
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcagttgtatttccatgtccctcaaaatttgaaaaaataattccattagatgaaagatat 324


Query: 334 ataacacatgcaacttttttaaaaaataaatcttcag 370
           |||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataacacatgcaacttttttaaaaaataaatcttcag 361

 Score =  351 bits (177), Expect(4) = 0.0
 Identities = 177/177 (100%)
 Strand = Plus / Plus


Query: 369 agaaacaacatttattggattattaacatcaaacaggttttataaagtggattcagatac 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 agaaacaacatttattggattattaacatcaaacaggttttataaagtggattcagatac 606


Query: 429 attaaaaaagatatggtcaatagatttatttgatatgcattcaatagagggagatgaatc 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 attaaaaaagatatggtcaatagatttatttgatatgcattcaatagagggagatgaatc 666


Query: 489 accagatccaaagacattaagaattgtatatcatgtaaaacaaacaccatcattagt 545
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 accagatccaaagacattaagaattgtatatcatgtaaaacaaacaccatcattagt 723

 Score = 87.7 bits (44), Expect(4) = 0.0
 Identities = 44/44 (100%)
 Strand = Plus / Plus


Query: 13 catattacacatttgcacaaatttattttacaaaatcacaaatc 56
          ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4  catattacacatttgcacaaatttattttacaaaatcacaaatc 47

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,409,501,447
Number of extensions: 97908345
Number of successful extensions: 9015499
Number of sequences better than 10.0: 175
Length of query: 1189
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1165
Effective length of database: 97,308,875,965
Effective search space: 113364840499225
Effective search space used: 113364840499225
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.25
Homology vs Protein 
Query= Contig-U09230-1 (Contig-U09230-1Q) /CSM_Contig/Contig-U09230-1Q.Seq.d
         (1189 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ478177_8(FJ478177|pid:none) Enicospilus sp. MD-2008 mitochondr...    36   3.0
(P28654) RecName: Full=Decorin; AltName: Full=Bone proteoglycan ...    35   5.2
FJ478176_3(FJ478176|pid:none) Venturia canescens mitochondrion, ...    35   5.2
AB193064_1(AB193064|pid:none) Homo sapiens Sgo1 mRNA for shugosh...    34   8.8
(Q9BVA8) RecName: Full=Shugoshin-like 1;          Short=hSgo1; A...    34   8.8
BC001339_1(BC001339|pid:none) Homo sapiens shugoshin-like 1 (S. ...    34   8.8
(Q01129) RecName: Full=Decorin; AltName: Full=Bone proteoglycan ...    34   8.8
AB187582_1(AB187582|pid:none) Homo sapiens SgoL1-C2 mRNA for shu...    34   8.8
AB187581_1(AB187581|pid:none) Homo sapiens SgoL1-C1 mRNA for shu...    34   8.8
AB187579_1(AB187579|pid:none) Homo sapiens SgoL1-B1 mRNA for shu...    34   8.8

>FJ478177_8(FJ478177|pid:none) Enicospilus sp. MD-2008
           mitochondrion, partial genome.
          Length = 571

 Score = 35.8 bits (81), Expect = 3.0
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 22/105 (20%)
 Frame = -1

Query: 544 LMMVFVLHDIQFLMSLDLVIHLPLLNAYQINLLTISF-LMYLNPLYKTCLMLIIQ*MLFL 368
           L+ ++++  I F M L +  H   +  Y +NL+ + + ++YL+ +YK  + L++   L
Sbjct: 461 LIYMYMIMGILFSMLLSIYYHKICIIYYYMNLINLIYWMLYLSLMYKFSVKLLLIMTLNQ 520

Query: 367 K----------------IYFLKKLHVL-----YIFHLMELFFQIL 296
           K                I+FLKKL        Y+F+LM LF+ +L
Sbjct: 521 KFNYELGWNEYLFGKNLIFFLKKLMKYDLMYKYLFNLMILFYYLL 565

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,296,064,930
Number of extensions: 21641251
Number of successful extensions: 51986
Number of sequences better than 10.0: 10
Number of HSP's gapped: 51967
Number of HSP's successfully gapped: 10
Length of query: 396
Length of database: 1,040,966,779
Length adjustment: 131
Effective length of query: 265
Effective length of database: 621,205,444
Effective search space: 164619442660
Effective search space used: 164619442660
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.90  gvh: 0.58  alm: 0.45  top: 0.40  tms: 0.00  mit: 0.48  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 20.0 %: extracellular, including cell wall
	 20.0 %: nuclear
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: cytoplasmic
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U09230-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0