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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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Contig-U09201-1
Contig ID Contig-U09201-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U09201-1 (Contig-U09201-1Q) /CSM_Contig/Contig-U09201-1Q.Seq.d
CAATGACACAAAGGGATGTTATTGATATAATATCATCAGATGAAGAGGAA
AAGAAACCAAGTTCAAAAGTTTCAAATTCAGGTTTCAATTTTTCACTTGA
TGATGAAGAGGATGATGAAGATGAATCAATTGAACAAACATTCATGACAG
AAAAAGAGAAAAAAAAAAAATTATCAGAAGAAAAGAAGAAATCAAAAAAG
ACTACCACTACTACTACTACTACTACTTCTACAAATAATAATAATAATAG
TATTAATAG----------TGTGCAGATTCAATAAAGAAGAGGAAACAAA
CTTCTCTATGTGATACTTGGAGTAATCAGTTATGTCAGATCACTGGTATC
TCTTCGAATATCGCGAGAGGTATCGTTGCAAAGTATCCAACTGTCACTAG
TTTATTCTCTTACTATGGTGATTCCTCTTCAGAGTATGAAAAAGAAAACC
TTTTAAGAGATGTTAAAATCGACCAAAATAGAGGTACTAAAAATTTAGGT
CCAGTTCTCTCTTCAAAAATTTATCATATTTTCTCTTCAAAAGATCCAAA
TAGAATCATTTATTAATTAATTTTAAATAAATTATAATTGTATCTTTAAA
AA
Gap gap included
Contig length 592
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 1644222
End point 1643632
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U09201
List of clone(s) 

est1=SLF690F,1,260
est2=SLF690Z,261,594
Translated Amino Acid sequence 
MTQRDVIDIISSDEEEKKPSSKVSNSGFNFSLDDEEDDEDESIEQTFMTEKEKKKKLSEE
KKKSKKTTTTTTTTTSTNNNNNSIN---

---CADSIKKRKQTSLCDTWSNQLCQITGISSNIARGIVAKYPTVTSLFSYYGDSSSEYE
KENLLRDVKIDQNRGTKNLGPVLSSKIYHIFSSKDPNRIIY*lilnkl*lyl*k
Translated Amino Acid sequence (All Frames) 
Frame A:
q*hkgmlli*yhqmkrkrnqvqkfqiqvsifhlmmkrmmkmnqlnkhs*qkkrkkknyqk
krrnqkrlpllllllllqiiiiivli---

---CADSIKKRKQTSLCDTWSNQLCQITGISSNIARGIVAKYPTVTSLFSYYGDSSSEYE
KENLLRDVKIDQNRGTKNLGPVLSSKIYHIFSSKDPNRIIY*lilnkl*lyl*k

Frame B:
ndtkgcy*yniir*rgketkfksfkfrfqfft***rg**r*in*tnihdrkrekkkiirr
keeikkdyhyyyyyyfyk*****y**---

---vqiq*rrgnkllyvilgvisyvrslvslrisrevslqsiqlslvysltmviplqsmk
kktf*emlkstkievlki*vqfslqkfiifslqkiqiesfin*f*inyncifk

Frame C:
MTQRDVIDIISSDEEEKKPSSKVSNSGFNFSLDDEEDDEDESIEQTFMTEKEKKKKLSEE
KKKSKKTTTTTTTTTSTNNNNNSIN---

---crfnkeeetnfsm*yle*svmsdhwylfeyreryrckvsnch*filllw*flfrv*k
rkpfkrc*nrpk*ry*kfrssslfknlsyflfkrsk*nhllinfk*iiivslk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U09201-1 (Contig-U09201-1Q)
/CSM_Contig/Contig-U09201-1Q.Seq.d
         (602 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09201-1 (Contig-U09201-1Q) /CSM_Contig/Conti...   684  0.0
Contig-U12206-1 (Contig-U12206-1Q) /CSM_Contig/Conti...    50  3e-06
Contig-U05426-1 (Contig-U05426-1Q) /CSM_Contig/Conti...    50  3e-06
Contig-U01107-1 (Contig-U01107-1Q) /CSM_Contig/Conti...    48  1e-05
Contig-U12257-1 (Contig-U12257-1Q) /CSM_Contig/Conti...    46  4e-05
Contig-U09686-1 (Contig-U09686-1Q) /CSM_Contig/Conti...    46  4e-05
Contig-U09510-1 (Contig-U09510-1Q) /CSM_Contig/Conti...    46  4e-05
Contig-U08202-1 (Contig-U08202-1Q) /CSM_Contig/Conti...    46  4e-05
Contig-U04171-1 (Contig-U04171-1Q) /CSM_Contig/Conti...    46  4e-05
Contig-U02594-1 (Contig-U02594-1Q) /CSM_Contig/Conti...    46  4e-05

>Contig-U09201-1 (Contig-U09201-1Q) /CSM_Contig/Contig-U09201-1Q.Seq.d
          Length = 602

 Score =  684 bits (345), Expect = 0.0
 Identities = 375/375 (100%)
 Strand = Plus / Plus

                                                                       
Query: 228 tctacaaataataataataatagtattaatagnnnnnnnnnntgtgcagattcaataaag 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tctacaaataataataataatagtattaatagnnnnnnnnnntgtgcagattcaataaag 287

                                                                       
Query: 288 aagaggaaacaaacttctctatgtgatacttggagtaatcagttatgtcagatcactggt 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aagaggaaacaaacttctctatgtgatacttggagtaatcagttatgtcagatcactggt 347

                                                                       
Query: 348 atctcttcgaatatcgcgagaggtatcgttgcaaagtatccaactgtcactagtttattc 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 atctcttcgaatatcgcgagaggtatcgttgcaaagtatccaactgtcactagtttattc 407

                                                                       
Query: 408 tcttactatggtgattcctcttcagagtatgaaaaagaaaaccttttaagagatgttaaa 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tcttactatggtgattcctcttcagagtatgaaaaagaaaaccttttaagagatgttaaa 467

                                                                       
Query: 468 atcgaccaaaatagaggtactaaaaatttaggtccagttctctcttcaaaaatttatcat 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 atcgaccaaaatagaggtactaaaaatttaggtccagttctctcttcaaaaatttatcat 527

                                                                       
Query: 528 attttctcttcaaaagatccaaatagaatcatttattaattaattttaaataaattataa 587
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 attttctcttcaaaagatccaaatagaatcatttattaattaattttaaataaattataa 587

                          
Query: 588 ttgtatctttaaaaa 602
           |||||||||||||||
Sbjct: 588 ttgtatctttaaaaa 602


 Score =  325 bits (164), Expect = 3e-89
 Identities = 188/200 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatgacacaaagggatgttattgatataatatcatcagatgaagaggaaaagaaaccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   caatgacacaaagggatgttattgatataatatcatcagatgaagaggaaaagaaaccaa 60

                                                                       
Query: 61  gttcaaaagtttcaaattcaggtttcaatttttcacttgatgatgaagaggatgatgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gttcaaaagtttcaaattcaggtttcaatttttcacttgatgatgaagaggatgatgaag 120

                                                                       
Query: 121 atgaatcaattgaacaaacattcatgacagaaaaagagnnnnnnnnnnnnttatcagaag 180
           ||||||||||||||||||||||||||||||||||||||            ||||||||||
Sbjct: 121 atgaatcaattgaacaaacattcatgacagaaaaagagaaaaaaaaaaaattatcagaag 180

                               
Query: 181 aaaagaagaaatcaaaaaag 200
           ||||||||||||||||||||
Sbjct: 181 aaaagaagaaatcaaaaaag 200


>Contig-U12206-1 (Contig-U12206-1Q) /CSM_Contig/Contig-U12206-1Q.Seq.d
          Length = 993

 Score = 50.1 bits (25), Expect = 3e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 234 aataataataataatagtattaata 258
           |||||||||||||||||||||||||
Sbjct: 646 aataataataataatagtattaata 670


 Score = 42.1 bits (21), Expect = 7e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 234 aataataataataatagtattaata 258
           |||||||||||||||| ||||||||
Sbjct: 625 aataataataataatattattaata 649


 Score = 32.2 bits (16), Expect = 0.66
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 234 aataataataataata 249
           ||||||||||||||||
Sbjct: 348 aataataataataata 363


 Score = 32.2 bits (16), Expect = 0.66
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 234 aataataataataata 249
           ||||||||||||||||
Sbjct: 688 aataataataataata 703


 Score = 32.2 bits (16), Expect = 0.66
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 236 taataataataatagtatta 255
           |||||||||||||| |||||
Sbjct: 624 taataataataataatatta 643


 Score = 32.2 bits (16), Expect = 0.66
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 99  gatgatgaagaggatgatga 118
           |||||||||||| |||||||
Sbjct: 111 gatgatgaagagtatgatga 130


 Score = 32.2 bits (16), Expect = 0.66
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 233 aaataataataataat 248
           ||||||||||||||||
Sbjct: 606 aaataataataataat 621


>Contig-U05426-1 (Contig-U05426-1Q) /CSM_Contig/Contig-U05426-1Q.Seq.d
          Length = 593

 Score = 50.1 bits (25), Expect = 3e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 230 tacaaataataataataatagtattaata 258
           ||||||||||||||||||||||| |||||
Sbjct: 303 tacaaataataataataatagtaataata 331


 Score = 36.2 bits (18), Expect = 0.042
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 232 caaataataataataata 249
           ||||||||||||||||||
Sbjct: 35  caaataataataataata 52


 Score = 32.2 bits (16), Expect = 0.66
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 234 aataataataataata 249
           ||||||||||||||||
Sbjct: 40  aataataataataata 55


 Score = 30.2 bits (15), Expect = 2.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 234 aataataataataat 248
           |||||||||||||||
Sbjct: 43  aataataataataat 57


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 29,977
Number of Sequences: 6905
Number of extensions: 29977
Number of successful extensions: 13779
Number of sequences better than 10.0: 1917
length of query: 602
length of database: 5,674,871
effective HSP length: 16
effective length of query: 586
effective length of database: 5,564,391
effective search space: 3260733126
effective search space used: 3260733126
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.15
Homology vs DNA 
Query= Contig-U09201-1 (Contig-U09201-1Q) /CSM_Contig/Contig-U09201-1Q.Seq.d
         (602 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU053103) Dictyostelium discoideum slug cDNA, clone SLF690.      660   0.0    1
(AU061752) Dictyostelium discoideum slug cDNA, clone SLF690.      313   e-105  3
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    56   7e-11  4
(AC115581) Dictyostelium discoideum chromosome 2 map complem...    46   2e-06  6
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    42   9e-06  3
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4...    46   3e-05  4
(AL034558) Plasmodium falciparum MAL3P2.                           46   5e-05  7
(CR382400) Plasmodium falciparum chromosome 6, complete sequ...    46   5e-05  4
(BJ433029) Dictyostelium discoideum cDNA clone:ddv20f15, 3' ...    46   6e-05  2
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084...    46   1e-04  2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    50   2e-04  2
(AL844506) Plasmodium falciparum chromosome  7.                    50   2e-04  3
(AC006280) Plasmodium falciparum chromosome 12 clone 3D7, **...    38   2e-04  7
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s...    44   3e-04  5
(DJ025881) Genome-wide DNA marker of Saccharomyces cerevisiae.     52   3e-04  7
(AC004709) Plasmodium falciparum chromosome 12, *** SEQUENCI...    38   5e-04  7
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    44   5e-04  3
(AM482417) Vitis vinifera contig VV78X102122.2, whole genome...    44   5e-04  2
(BX897729) Zebrafish DNA sequence from clone DKEY-240A12 in ...    44   5e-04  5
(AC198707) MACACA MULATTA BAC clone CH250-335K1 from chromos...    44   7e-04  3
(AL034559) Plasmodium falciparum MAL3P7.                           38   7e-04  9
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    44   9e-04  3
(AL031745) Plasmodium falciparum DNA from MAL1P2.                  46   0.001  3
(ER854703) POTLD07TR Solanum tuberosum RHPOTKEY BAC ends Sol...    44   0.001  2
(EC361575) IMMUNEF091726O1 POSSUM_01-C-POSSUM-IMMUNE-2KB Tri...    56   0.001  1
(EC361467) IMMUNEF091726I13 POSSUM_01-C-POSSUM-IMMUNE-2KB Tr...    56   0.001  1
(EC361425) IMMUNEF091726G15 POSSUM_01-C-POSSUM-IMMUNE-2KB Tr...    56   0.001  1
(DY614609) IMMUNEF045805E21 POSSUM_01-C-POSSUM-IMMUNE-2KB Tr...    56   0.001  1
(DY595914) KIDNEYF074989B15 POSSUM_01-POSSUM-KIDNEY-2KB Tric...    56   0.001  1
(BU247445) 603591573F1 CSEQCHN34 Gallus gallus cDNA clone Ch...    56   0.001  1
(BU228873) 603801126F1 CSEQCHN23 Gallus gallus cDNA clone Ch...    56   0.001  1
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ...    42   0.002  3
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7...    40   0.002  7
(AY184993) Dictyostelium discoideum inositol 5-phosphatase 2...    42   0.002  2
(CU694811) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   0.002  4
(AC102318) Mus musculus chromosome 7, clone RP24-447C20, com...    40   0.002  5
(EH014092) USDA-FP_186827 Lysiphlebus testaceipes adult whol...    36   0.002  3
(CR381598) Zebrafish DNA sequence from clone CH211-263K4 in ...    54   0.002  3
(DX490224) Cpl32027 Papaya Genomic DNA BAC Library Carica pa...    42   0.002  2
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595...    46   0.002  2
(AC183492) Brassica oleracea Contig G, complete sequence.          42   0.002  6
(AP008207) Oryza sativa (japonica cultivar-group) genomic DN...    48   0.002  4
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s...    42   0.002  5
(AC176490) Strongylocentrotus purpuratus clone R3-3071B01, W...    38   0.002  5
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    50   0.003  2
(CR382401) Plasmodium falciparum chromosome 6, complete sequ...    46   0.003  5
(CU469525) Zebrafish DNA sequence from clone CH1073-409B12 i...    46   0.003  4
(CU861459) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.003  3
(CU457781) Zebrafish DNA sequence from clone DKEY-8L3 in lin...    40   0.003  6
(AC171134) Helobdella robusta clone CH306-1A5, complete sequ...    38   0.003  4
(AZ722818) RPCI-24-61E18.TJ RPCI-24 Mus musculus genomic clo...    46   0.003  2
(AC184432) Strongylocentrotus purpuratus clone R3-3090B11, W...    44   0.004  6
(BX196657) Danio rerio genomic clone DKEY-220A5, genomic sur...    40   0.004  2
(CR749771) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   0.004  6
(AM481701) Vitis vinifera contig VV78X065164.14, whole genom...    42   0.004  2
(AM461867) Vitis vinifera contig VV78X177444.17, whole genom...    42   0.004  4
(BX890608) Zebrafish DNA sequence from clone CH211-195J11 in...    42   0.004  7
(AC103822) Homo sapiens chromosome 8, clone CTD-2094O7, comp...    42   0.005  3
(AL954683) Zebrafish DNA sequence from clone DKEY-49K10 in l...    44   0.006  6
(DV946993) SB03006B2F08.f1 Normalized subtracted Keck-Tagu L...    54   0.006  1
(DV945831) SB03003B1C01.f1 Normalized subtracted Keck-Tagu L...    54   0.006  1
(BM166822) EST569345 PyBS Plasmodium yoelii yoelii cDNA clon...    54   0.006  1
(FE713447) SB03052B2B08.f1 Normalized subtracted Keck-Tagu L...    54   0.006  1
(CR385057) Zebrafish DNA sequence from clone DKEY-189E2 in l...    50   0.006  2
(CU151881) Zebrafish DNA sequence from clone CH211-161G17 in...    42   0.006  4
(BX511082) Zebrafish DNA sequence from clone DKEY-7J20 in li...    50   0.006  2
(AC115606) Dictyostelium discoideum chromosome 2 map 159760-...    36   0.007  4
(AF482387) Dictyostelium discoideum ABC transporter AbcG12 (...    38   0.007  3
(AM481116) Vitis vinifera, whole genome shotgun sequence, co...    36   0.007  5
(BJ424885) Dictyostelium discoideum cDNA clone:ddv53m19, 5' ...    40   0.007  2
(AC176359) Strongylocentrotus purpuratus clone R3-3053I20, W...    42   0.008  4
(EL918151) NY4Th2_17_F02.b1_A039 NY4 theronts Ichthyophthiri...    42   0.008  3
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    44   0.008  3
(CQ870085) Sequence 506 from Patent WO2004074320.                  48   0.009  3
(AC202377) Medicago truncatula clone mth2-97o11, WORKING DRA...    36   0.009  7
(CU633479) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   0.009  6
(M82822) Dictyostelium discoideum alpha-mannosidase (manA) g...    48   0.009  3
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ...    38   0.009  6
(AL844509) Plasmodium falciparum chromosome 13.                    46   0.009  2
(BX004819) Zebrafish DNA sequence from clone CH211-208B16 in...    44   0.009  4
(AC181906) Strongylocentrotus purpuratus clone R3-1013F15, W...    40   0.009  4
(CR735127) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.009  3
(AZ722931) RPCI-24-61F17.TJ RPCI-24 Mus musculus genomic clo...    46   0.010  2
(BX323874) Zebrafish DNA sequence from clone DKEY-104N21 in ...    40   0.010  6
(AL772396) Zebrafish DNA sequence from clone CH211-253F14.         52   0.010  4
(CR382399) Plasmodium falciparum chromosome 6, complete sequ...    42   0.011  6
(AC200982) Strongylocentrotus purpuratus clone R3-12A5, WORK...    38   0.011  6
(BJ329614) Dictyostelium discoideum cDNA clone:dda25m17, 5' ...    44   0.011  2
(AR546729) Sequence 1860 from patent US 6747137.                   44   0.011  2
(AC067844) Homo sapiens chromosome 8, clone RP11-234A3, comp...    42   0.012  4
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9...    44   0.012  5
(AP008212) Oryza sativa (japonica cultivar-group) genomic DN...    44   0.012  3
(AM461309) Vitis vinifera, whole genome shotgun sequence, co...    42   0.012  3
(AX537050) Sequence 651 from Patent WO02064766.                    46   0.012  4
(AR941730) Sequence 651 from patent US 7101990.                    46   0.012  4
(AC024516) Homo sapiens chromosome 6 clone RP11-167K24 map 6...    40   0.013  4
(AC114265) Dictyostelium discoideum chromosome 2 map 4520461...    44   0.013  4
(CK313013) SB02036B1A01.f1 normalized Keck-Tagu Library SB02...    50   0.013  2
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2...    42   0.013  5
(EY387143) CAXA6605.fwd CAXA Helobdella robusta Subtracted L...    42   0.013  2

>(AU053103) Dictyostelium discoideum slug cDNA, clone SLF690.
          Length = 334

 Score =  660 bits (333), Expect = 0.0
 Identities = 333/333 (100%)
 Strand = Plus / Plus


Query: 270 tgtgcagattcaataaagaagaggaaacaaacttctctatgtgatacttggagtaatcag 329
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tgtgcagattcaataaagaagaggaaacaaacttctctatgtgatacttggagtaatcag 60


Query: 330 ttatgtcagatcactggtatctcttcgaatatcgcgagaggtatcgttgcaaagtatcca 389
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttatgtcagatcactggtatctcttcgaatatcgcgagaggtatcgttgcaaagtatcca 120


Query: 390 actgtcactagtttattctcttactatggtgattcctcttcagagtatgaaaaagaaaac 449
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 actgtcactagtttattctcttactatggtgattcctcttcagagtatgaaaaagaaaac 180


Query: 450 cttttaagagatgttaaaatcgaccaaaatagaggtactaaaaatttaggtccagttctc 509
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cttttaagagatgttaaaatcgaccaaaatagaggtactaaaaatttaggtccagttctc 240


Query: 510 tcttcaaaaatttatcatattttctcttcaaaagatccaaatagaatcatttattaatta 569
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcttcaaaaatttatcatattttctcttcaaaagatccaaatagaatcatttattaatta 300


Query: 570 attttaaataaattataattgtatctttaaaaa 602
           |||||||||||||||||||||||||||||||||
Sbjct: 301 attttaaataaattataattgtatctttaaaaa 333

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 856,309,552
Number of extensions: 68120408
Number of successful extensions: 10482776
Number of sequences better than 10.0: 6710
Length of query: 602
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 579
Effective length of database: 93,106,754,628
Effective search space: 53908810929612
Effective search space used: 53908810929612
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.25
Homology vs Protein 
Query= Contig-U09201-1 (Contig-U09201-1Q) /CSM_Contig/Contig-U09201-1Q.Seq.d
         (602 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC155263_1(BC155263|pid:none) Danio rerio MUS81 endonuclease hom...    63   7e-09
(Q7SXA9) RecName: Full=Crossover junction endonuclease MUS81;   ...    63   7e-09
AL606635_8(AL606635|pid:none) Oryza sativa genomic DNA, chromoso...    54   3e-06
BC157436_1(BC157436|pid:none) Xenopus laevis hypothetical protei...    54   4e-06
(Q8BJW7) RecName: Full=Crossover junction endonuclease EME1;    ...    51   2e-05
AB169423_1(AB169423|pid:none) Macaca fascicularis testis cDNA, c...    51   2e-05
AK024665_1(AK024665|pid:none) Homo sapiens cDNA: FLJ21012 fis, c...    51   3e-05
AK223564_1(AK223564|pid:none) Homo sapiens mRNA for MUS81 endonu...    51   3e-05
(Q96NY9) RecName: Full=Crossover junction endonuclease MUS81;   ...    51   3e-05
T41371(T41371)hypothetical protein SPCC4G3.05c - fission yeast  ...    49   1e-04
(Q96AY2) RecName: Full=Crossover junction endonuclease EME1;    ...    48   2e-04
BC016470_1(BC016470|pid:none) Homo sapiens essential meiotic end...    48   2e-04
AE013599_1212(AE013599|pid:none) Drosophila melanogaster chromos...    45   0.002
AM910992_236(AM910992|pid:none) Plasmodium knowlesi strain H chr...    44   0.004
FJ936556_1(FJ936556|pid:none) Arabidopsis thaliana meiotic endon...    43   0.008
CR954212_8(CR954212|pid:none) Ostreococcus tauri strain OTTH0595...    42   0.010
AC007168_17(AC007168|pid:none) Arabidopsis thaliana chromosome 2...    42   0.013
(Q0IHN5) RecName: Full=Probable crossover junction endonuclease ...    41   0.022
FM992693_46(FM992693|pid:none) Candida dubliniensis CD36 chromos...    41   0.029
AC007019_10(AC007019|pid:none) Arabidopsis thaliana chromosome 2...    41   0.029
(Q6BJ48) RecName: Full=Crossover junction endonuclease MUS81;   ...    39   0.085
EF215358_1(EF215358|pid:none) Callithrix jacchus clone M15-53.1_...    37   0.55
U80437_16(U80437|pid:none) Caenorhabditis elegans cosmid C43E11,...    37   0.55
C87754(C87754) protein C43E11.2 [imported] - Caenorhabditis eleg...    37   0.55
CP000499_51(CP000499|pid:none) Pichia stipitis CBS 6054 chromoso...    35   1.6
AM433890_1(AM433890|pid:none) Vitis vinifera contig VV79X007836....    35   1.6
CU928170_629(CU928170|pid:none) Kluyveromyces thermotolerans str...    33   4.6

>BC155263_1(BC155263|pid:none) Danio rerio MUS81 endonuclease
           homolog (yeast), mRNA (cDNA clone MGC:174757
           IMAGE:6898936), complete cds.
          Length = 612

 Score = 62.8 bits (151), Expect = 7e-09
 Identities = 34/87 (39%), Positives = 52/87 (59%)
 Frame = +3

Query: 288 KRKQTSLCDTWSNQLCQITGISSNIARGIVAKYPTVTSLFSYYGDSSSEYEKENLLRDVK 467
           K K  ++ + ++ QL QI+G+S + A  ++  Y TV+SL   Y   SSE EKE LL  VK
Sbjct: 526 KNKCQTVREVFARQLMQISGVSGDKAAAVLEHYSTVSSLLQAYDKCSSETEKEKLLSSVK 585

Query: 468 IDQNRGTKNLGPVLSSKIYHIFSSKDP 548
             + +  +NLGP LS  IY ++ ++ P
Sbjct: 586 YGKLK--RNLGPALSRTIYQLYCTRGP 610

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 617,152,746
Number of extensions: 9141324
Number of successful extensions: 19421
Number of sequences better than 10.0: 27
Number of HSP's gapped: 19364
Number of HSP's successfully gapped: 27
Length of query: 200
Length of database: 1,040,966,779
Length adjustment: 122
Effective length of query: 78
Effective length of database: 650,044,009
Effective search space: 50703432702
Effective search space used: 50703432702
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.75  gvh: 0.08  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall

>> prediction for Contig-U09201-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0