Contig-U09164-1 |
Contig ID |
Contig-U09164-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
gap included |
Contig length |
988 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
2038695 |
End point |
2037707 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
2 |
Number of EST |
4 |
Link to clone list |
U09164 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.15 |
Homology vs DNA |
Query= Contig-U09164-1 (Contig-U09164-1Q) /CSM_Contig/Contig-U09164-1Q.Seq.d (998 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ415009) Dictyostelium discoideum cDNA clone:ddv21l01, 5' ... 1207 0.0 1 (AU061131) Dictyostelium discoideum slug cDNA, clone SLD323. 617 e-172 1 (AU052440) Dictyostelium discoideum slug cDNA, clone SLD323. 232 e-109 3 (BJ433226) Dictyostelium discoideum cDNA clone:ddv21l01, 3' ... 315 1e-81 2 (AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 56 7e-07 4 (AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 60 2e-04 1 (CT030231) Mouse DNA sequence from clone RP24-331M15 on chro... 56 0.003 1 (CT010470) Mouse DNA sequence from clone RP23-313D12 on chro... 56 0.003 1 (AC154355) Mus musculus BAC clone RP23-220N4 from 13, comple... 56 0.003 1 (AC154204) Mus musculus BAC clone RP24-393D5 from chromosome... 56 0.003 1 (AC125395) Mus musculus BAC clone RP23-213J1 from chromosome... 56 0.003 1 (AC121095) Mus musculus chromosome 14, clone RP24-324H17, co... 56 0.003 1 (AC114593) Mus musculus chromosome 14, clone RP23-44B17, com... 56 0.003 1 (EU094826) Humulus lupulus clone ACC2-P6-6 microsatellite se... 56 0.003 1 (BX294013) Neurospora crassa DNA linkage group V Cosmid cont... 56 0.003 1 (AY764183) Aplysia californica syntaxin mRNA, complete cds. 56 0.003 1 (AC159443) Trypanosoma brucei chromosome 5 clone RPCI93-30H1... 56 0.003 1 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 56 0.003 1 (AC162362) Mus musculus chromosome 5 clone RP23-24M15 map 5,... 56 0.003 1 (AC206753) Zea mays chromosome 2 clone ZMMBBb-566G2; ZMMBBb0... 56 0.003 1 (AC174734) Strongylocentrotus purpuratus clone R3-1115F23, W... 56 0.003 1 (AQ639424) 927P1-2B11.TV 927P1 Trypanosoma brucei genomic cl... 56 0.003 1 (FH348014) CHO_OF4264xc19f1.ab1 CHO_OF4 Nicotiana tabacum ge... 56 0.003 1 (FH141844) CHO_OF3711xc17r1.ab1 CHO_OF3 Nicotiana tabacum ge... 56 0.003 1 (ER280954) 1095595489514 Global-Ocean-Sampling_GS-33-01-01-1... 56 0.003 1 (ER197365) 1095522321067 Global-Ocean-Sampling_GS-33-01-01-1... 56 0.003 1 (DX871512) ZMMBLf0001F18.f ZMMBLf Zea mays genomic clone ZMM... 56 0.003 1 (DH490983) Monosiga ovata DNA, fosmid clone: MOF-051F21, gen... 56 0.003 1 (AU061406) Dictyostelium discoideum slug cDNA, clone SLE128. 56 0.003 1 (C23751) Dictyostelium discoideum gamete cDNA, clone FC-AE17. 56 0.003 1 (BM169307) EST571830 PyBS Plasmodium yoelii yoelii cDNA clon... 56 0.003 1 (BM166319) EST568842 PyBS Plasmodium yoelii yoelii cDNA clon... 56 0.003 1 (BM164357) EST566880 PyBS Plasmodium yoelii yoelii cDNA clon... 56 0.003 1 (BM162778) EST565290 PyBS Plasmodium yoelii yoelii cDNA clon... 56 0.003 1 (BI556463) 603237209F1 NCI_CGAP_Mam3 Mus musculus cDNA clone... 56 0.003 1 (FG469329) 020217KAKA006075HT (KAKA) Dormant kiwifruit buds ... 56 0.003 1 (FG467374) 011203KAKA003855HT (KAKA) Dormant kiwifruit buds ... 56 0.003 1 (FG147444) AGN_RPC005xg11f1.ab1 AGN_RPC Nicotiana tabacum cD... 56 0.003 1 (FE772218) CCAG6530.g1 CCAG Petrolisthes cinctipes heart, gi... 56 0.003 1 (EY300166) CAWX14866.fwd CAWX Helobdella robusta Primary Ear... 56 0.003 1 (EY300165) CAWX14866.rev CAWX Helobdella robusta Primary Ear... 56 0.003 1 (AR545847) Sequence 978 from patent US 6747137. 54 0.006 2 (AC098226) Rattus norvegicus clone CH230-56K13, *** SEQUENCI... 48 0.009 3 (AL807383) Mouse DNA sequence from clone RP23-286N14 on chro... 54 0.010 1 (AL663083) Mouse DNA sequence from clone RP23-280G3 on chrom... 54 0.010 1 (AC161216) Mus musculus chromosome 7, clone RP23-8K23, compl... 54 0.010 1 (AC154842) Mus musculus BAC clone RP23-55C11 from chromosome... 54 0.010 1 (AC154545) Mus musculus BAC clone RP23-431G16 from chromosom... 54 0.010 1 (AC153566) Mus musculus 10 BAC RP23-5H4 (Roswell Park Cancer... 54 0.010 1 (AC140337) Mus musculus BAC clone RP23-238H7 from 1, complet... 54 0.010 1 (AC118003) Mus musculus chromosome 5, clone RP23-146G20, com... 54 0.010 1 (AC116815) Mus musculus chromosome 5, clone RP24-357H22, com... 54 0.010 1 (AC115742) Mus musculus chromosome 7, clone RP23-477E13, com... 54 0.010 1 (AC110551) Mus musculus chromosome 7, clone RP23-245P16, com... 54 0.010 1 (EU094835) Humulus lupulus clone ACC2-E14-4 microsatellite s... 54 0.010 1 (AP007167) Aspergillus oryzae RIB40 genomic DNA, SC020. 54 0.010 1 (AY392443) Dictyostelium discoideum possible endotoxin gene,... 54 0.010 1 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 54 0.010 1 (AL049849) Homo sapiens chromosome 21 BAC B1L1C6. 54 0.010 1 (AC157579) Mus musculus chromosome 1 clone RP23-14E16 map 1,... 54 0.010 1 (AC131143) Rattus norvegicus clone CH230-76E20, *** SEQUENCI... 54 0.010 1 (AC127156) Rattus norvegicus clone CH230-7B10, *** SEQUENCIN... 54 0.010 1 (AC120978) Rattus norvegicus clone CH230-515P13, WORKING DRA... 54 0.010 1 (AC119130) Rattus norvegicus clone CH230-414I23, *** SEQUENC... 54 0.010 1 (AC115510) Rattus norvegicus clone CH230-383C9, *** SEQUENCI... 54 0.010 1 (AC112086) Rattus norvegicus clone CH230-332D11, *** SEQUENC... 54 0.010 1 (AC095424) Rattus norvegicus clone CH230-7A8, *** SEQUENCING... 54 0.010 1 (AC201183) Strongylocentrotus purpuratus clone R3-14O10, WOR... 54 0.010 1 (AC184179) Strongylocentrotus purpuratus clone R3-6C4, WORKI... 54 0.010 1 (AC181725) Strongylocentrotus purpuratus clone R3-1039D03, W... 54 0.010 1 (AC181321) Strongylocentrotus purpuratus clone R3-115E19, WO... 54 0.010 1 (AC181279) Strongylocentrotus purpuratus clone R3-4015J17, W... 54 0.010 1 (AC181195) Strongylocentrotus purpuratus clone R3-12D21, WOR... 54 0.010 1 (AC181102) Strongylocentrotus purpuratus clone R3-3047K03, W... 54 0.010 1 (AC181062) Strongylocentrotus purpuratus clone R3-3050B8, WO... 54 0.010 1 (AC180587) Strongylocentrotus purpuratus clone R3-3094G12, W... 54 0.010 1 (AC179836) Strongylocentrotus purpuratus clone R3-1012D6, WO... 54 0.010 1 (AC179606) Strongylocentrotus purpuratus clone R3-1028P05, W... 54 0.010 1 (AC179481) Strongylocentrotus purpuratus clone R3-63M7, WORK... 54 0.010 1 (AC179091) Strongylocentrotus purpuratus clone R3-4010A15, W... 54 0.010 1 (AC178824) Strongylocentrotus purpuratus clone R3-29G2, WORK... 54 0.010 1 (AC178738) Strongylocentrotus purpuratus clone R3-13L11, WOR... 54 0.010 1 (AC178238) Strongylocentrotus purpuratus clone R3-3086D15, W... 54 0.010 1 (AC177698) Strongylocentrotus purpuratus clone R3-1011O24, W... 54 0.010 1 (AC177654) Strongylocentrotus purpuratus clone R3-3057A5, WO... 54 0.010 1 (AC177333) Strongylocentrotus purpuratus clone R3-1032L15, W... 54 0.010 1 (AC177073) Strongylocentrotus purpuratus clone R3-4004K17, W... 54 0.010 1 (AC176776) Strongylocentrotus purpuratus clone R3-3104K2, WO... 54 0.010 1 (AC176229) Strongylocentrotus purpuratus clone R3-3063A10, W... 54 0.010 1 (AC175949) Strongylocentrotus purpuratus clone R3-3038B20, W... 54 0.010 1 (AC174135) Strongylocentrotus purpuratus clone R3-1004A20, W... 54 0.010 1 (AC173635) Strongylocentrotus purpuratus clone R3-3028I10, *... 54 0.010 1 (AC172308) Strongylocentrotus purpuratus clone R3-14N10, WOR... 54 0.010 1 (AC025036) Mus musculus chromosome 11 clone RP23-280G3, *** ... 54 0.010 1 (BH094533) RPCI-24-357H22.TV RPCI-24 Mus musculus genomic cl... 54 0.010 1 (DH477779) Monosiga ovata DNA, fosmid clone: MOF-028J10, gen... 54 0.010 1 (DE222678) Trifolium pratense DNA, clone:RCG14187. 54 0.010 1 (DE121990) Oryzias latipes DNA, forward end of BAC clone: Md... 54 0.010 1 (CR165209) Forward strand read from insert in 5'HPRT inserti... 54 0.010 1 (CR049178) Forward strand read from insert in 5'HPRT inserti... 54 0.010 1
>(BJ415009) Dictyostelium discoideum cDNA clone:ddv21l01, 5' end, single read. Length = 609
Score = 1207 bits (609), Expect = 0.0 Identities = 609/609 (100%) Strand = Plus / Plus
Query: 1 catccctcttgaaattgactcaggaatataagcaattggaagagagattaaaagagttta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 catccctcttgaaattgactcaggaatataagcaattggaagagagattaaaagagttta 60
Query: 61 gtagcaaattacaacaatccatctcgtcatcgtcaatggaccaattcgaatcttggaaat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gtagcaaattacaacaatccatctcgtcatcgtcaatggaccaattcgaatcttggaaat 120
Query: 121 tggttttcattaaagatatcgaggaaagaattaacaaggaatctagcaaactcacaaacc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tggttttcattaaagatatcgaggaaagaattaacaaggaatctagcaaactcacaaacc 180
Query: 181 aatacattcaattaactcaacaatttacaaagattcaatcattcattaaagataatccat 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 aatacattcaattaactcaacaatttacaaagattcaatcattcattaaagataatccat 240
Query: 241 caattgattctctaacaaatacaatcgaatcgctcgaaggtattaaactattgattgaag 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 caattgattctctaacaaatacaatcgaatcgctcgaaggtattaaactattgattgaag 300
Query: 301 acatacttgaggtttatagtgctgataagattgcaaaagttgattatgctttaggtttag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 acatacttgaggtttatagtgctgataagattgcaaaagttgattatgctttaggtttag 360
Query: 361 ctggtgcttctattgaatataatgcattacattatagagttagtgaaacttatccaccaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ctggtgcttctattgaatataatgcattacattatagagttagtgaaacttatccaccaa 420
Query: 421 ttaaaggaagtggtagtggtagtggtagtggtggtgccaatggtaatagtttaggtttat 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 ttaaaggaagtggtagtggtagtggtagtggtggtgccaatggtaatagtttaggtttat 480
Query: 481 attattataatttagctacaaattggatattcccacaaccaaaaccaaacccacctgaaa 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 attattataatttagctacaaattggatattcccacaaccaaaaccaaacccacctgaaa 540
Query: 541 ctatattggatccaatggttaatactggttcatgttggggtttctatactggtaatggca 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 ctatattggatccaatggttaatactggttcatgttggggtttctatactggtaatggca 600
Query: 601 ccattgtaa 609 ||||||||| Sbjct: 601 ccattgtaa 609
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 909,987,640 Number of extensions: 53320089 Number of successful extensions: 4526818 Number of sequences better than 10.0: 1195 Length of query: 998 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 974 Effective length of database: 97,308,875,965 Effective search space: 94778845189910 Effective search space used: 94778845189910 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.25 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
1 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
1 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |