Contig-U09164-1
Contig ID Contig-U09164-1
Contig update 2002. 9.13
Contig sequence
>Contig-U09164-1 (Contig-U09164-1Q) /CSM_Contig/Contig-U09164-1Q.Seq.d
CATCCCTCTTGAAATTGACTCAGGAATATAAGCAATTGGAAGAGAGATTA
AAAGAGTTTAGTAGCAAATTACAACAATCCATCTCGTCATCGTCAATGGA
CCAATTCGAATCTTGGAAATTGGTTTTCATTAAAGATATCGAGGAAAGAA
TTAACAAGGAATCTAGCAAACTCACAAACCAATACATTCAATTAACTCAA
CAATTTACAAAGATTCAATCATTCATTAAAGATAATCCATCAATTGATTC
TCTAACAAATACAATCGAATCGCTCGAAGGTATTAAACTATTGATTGAAG
ACATACTTGAGGTTTATAGTGCTGATAAGATTGCAAAAGTTGATTATGCT
TTAGGTTTAGCTGGTGCTTCTATTGAATATAATGCATTACATTATAGAGT
TAGTGAAACTTATCCACCAATTAAAGGAAGTGGTAGTGGTAGTGGTAGTG
GTGGTGCCAATGGTAATAGTTTAGGTTTATATTATTATAATTTAGCTACA
AATTGGATATTCCCACAACCAAAACCAAACCCACCTGAAACTATATTGGA
TCCAATGGTTAATACTGGTTCATGTTGGGGTTTCTATACTGGTAATGGCA
CCATTGTAA----------ATGATACAACTATCAATAGACATTTACAAAC
TTTTAAAGTTAATAAAATTCAATCCACCACCACCACCACCACCAATCAAG
ATCAAAATGATGACGACAACATTCAAGAATTCTCACATGTAGCACTTAGA
ATCCTATCAAATCATGGTTATAGATATACTTGTATCTATAGATTCAGAGT
ACATGGTTATCGCAATTCCTCATCCAGAACAAGAACAAATACAAATTATT
CAAGAGGAACAATCTTTTAAACAAGAAGAGATTAATCAACAACAAATTGA
ACAAATTGAACAAATTGAACAAATTGAAAAACAACAACAATCTGATGAAT
TATAAATTATAAGAGATTTTGGAAAATTAAAAATAAAAAAATAAAAAA

Gap gap included
Contig length 988
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 2038695
End point 2037707
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 4
Link to clone list U09164
List of clone(s)

est1=VFK306F,1,609
est2=SLD323F,198,508
est3=SLD323Z,610,989
est4=VFK306Z,644,895
Translated Amino Acid sequence
SLLKLTQEYKQLEERLKEFSSKLQQSISSSSMDQFESWKLVFIKDIEERINKESSKLTNQ
YIQLTQQFTKIQSFIKDNPSIDSLTNTIESLEGIKLLIEDILEVYSADKIAKVDYALGLA
GASIEYNALHYRVSETYPPIKGSGSGSGSGGANGNSLGLYYYNLATNWIFPQPKPNPPET
ILDPMVNTGSCWGFYTGNGTIV---

---DTTINRHLQTFKVNKIQSTTTTTTNQDQNDDDNIQEFSHVALRILSNHGYRYTCIYR
FRVHGYRNSSSRTRTNTNYSRGTIF*trrd*sttn*tn*tn*tn*kttti**iinykrfw
kiknkkik


Translated Amino Acid sequence (All Frames)
Frame A:
hps*n*lrnisnwkrd*kslvanynnpsrhrqwtnsnlgnwfslkisrkeltrnlansqt
ntfn*lnnlqrfnhslkiihqlil*qiqsnrskvlny*lktylrfivlirlqkliml*v*
lvlllnimhyiielvklihqlkevvvvvvvvvpmviv*vyiiii*lqigyshnqnqthlk
lywiqwlilvhvgvsilvmapl*---

---miqlsidiykllklikfnpppppppikikmmtttfknshm*hlesyqimvidilvsi
dseymviaiphpeqeqiqiiqeeqsfkqeeinqqqieqieqieqiekqqqsdel*iirdf
gklkikk*k

Frame B:
ipleidsgi*aigreikrv**qittihlvivngpirileigfh*ryrgkn*qgi*qthkp
ihsinstiykdsiih*r*sin*fsnkynriarry*tid*rht*gl*c**dcks*lcfrfs
wcfy*i*citl*s**nlstn*rkw*w*w*wwcqw**frfill*fsykldipttktkpt*n
yigsng*ywfmlgflyw*whhc---

---*ynyq*tftnf*s**nsihhhhhhqsrsk**rqhsriltcst*npikswl*iylyl*
iqstwlsqfliqnknkyklfkrnnllnkkrlinnklnklnklnklknnnnlmnykl*eil
en*k*knkk

Frame C:
SLLKLTQEYKQLEERLKEFSSKLQQSISSSSMDQFESWKLVFIKDIEERINKESSKLTNQ
YIQLTQQFTKIQSFIKDNPSIDSLTNTIESLEGIKLLIEDILEVYSADKIAKVDYALGLA
GASIEYNALHYRVSETYPPIKGSGSGSGSGGANGNSLGLYYYNLATNWIFPQPKPNPPET
ILDPMVNTGSCWGFYTGNGTIV---

---DTTINRHLQTFKVNKIQSTTTTTTNQDQNDDDNIQEFSHVALRILSNHGYRYTCIYR
FRVHGYRNSSSRTRTNTNYSRGTIF*trrd*sttn*tn*tn*tn*kttti**iinykrfw
kiknkkik

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U09164-1 (Contig-U09164-1Q)
/CSM_Contig/Contig-U09164-1Q.Seq.d
(998 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U09164-1 (Contig-U09164-1Q) /CSM_Contig/Conti... 1275 0.0
Contig-U08227-1 (Contig-U08227-1Q) /CSM_Contig/Conti... 54 3e-07
Contig-U11524-1 (Contig-U11524-1Q) /CSM_Contig/Conti... 52 1e-06
Contig-U14059-1 (Contig-U14059-1Q) /CSM_Contig/Conti... 48 2e-05
Contig-U13396-1 (Contig-U13396-1Q) /CSM_Contig/Conti... 48 2e-05
Contig-U12945-1 (Contig-U12945-1Q) /CSM_Contig/Conti... 48 2e-05
Contig-U11970-1 (Contig-U11970-1Q) /CSM_Contig/Conti... 48 2e-05
Contig-U02748-1 (Contig-U02748-1Q) /CSM_Contig/Conti... 48 2e-05
Contig-U12561-1 (Contig-U12561-1Q) /CSM_Contig/Conti... 46 7e-05
Contig-U12001-1 (Contig-U12001-1Q) /CSM_Contig/Conti... 46 7e-05

>Contig-U09164-1 (Contig-U09164-1Q) /CSM_Contig/Contig-U09164-1Q.Seq.d
Length = 998

Score = 1275 bits (643), Expect = 0.0
Identities = 673/673 (100%)
Strand = Plus / Plus


Query: 1 catccctcttgaaattgactcaggaatataagcaattggaagagagattaaaagagttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 catccctcttgaaattgactcaggaatataagcaattggaagagagattaaaagagttta 60


Query: 61 gtagcaaattacaacaatccatctcgtcatcgtcaatggaccaattcgaatcttggaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtagcaaattacaacaatccatctcgtcatcgtcaatggaccaattcgaatcttggaaat 120


Query: 121 tggttttcattaaagatatcgaggaaagaattaacaaggaatctagcaaactcacaaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tggttttcattaaagatatcgaggaaagaattaacaaggaatctagcaaactcacaaacc 180


Query: 181 aatacattcaattaactcaacaatttacaaagattcaatcattcattaaagataatccat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aatacattcaattaactcaacaatttacaaagattcaatcattcattaaagataatccat 240


Query: 241 caattgattctctaacaaatacaatcgaatcgctcgaaggtattaaactattgattgaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caattgattctctaacaaatacaatcgaatcgctcgaaggtattaaactattgattgaag 300


Query: 301 acatacttgaggtttatagtgctgataagattgcaaaagttgattatgctttaggtttag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acatacttgaggtttatagtgctgataagattgcaaaagttgattatgctttaggtttag 360


Query: 361 ctggtgcttctattgaatataatgcattacattatagagttagtgaaacttatccaccaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctggtgcttctattgaatataatgcattacattatagagttagtgaaacttatccaccaa 420


Query: 421 ttaaaggaagtggtagtggtagtggtagtggtggtgccaatggtaatagtttaggtttat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttaaaggaagtggtagtggtagtggtagtggtggtgccaatggtaatagtttaggtttat 480


Query: 481 attattataatttagctacaaattggatattcccacaaccaaaaccaaacccacctgaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 attattataatttagctacaaattggatattcccacaaccaaaaccaaacccacctgaaa 540


Query: 541 ctatattggatccaatggttaatactggttcatgttggggtttctatactggtaatggca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctatattggatccaatggttaatactggttcatgttggggtttctatactggtaatggca 600


Query: 601 ccattgtaannnnnnnnnnatgatacaactatcaatagacatttacaaacttttaaagtt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ccattgtaannnnnnnnnnatgatacaactatcaatagacatttacaaacttttaaagtt 660


Query: 661 aataaaattcaat 673
|||||||||||||
Sbjct: 661 aataaaattcaat 673


Score = 381 bits (192), Expect = e-105
Identities = 192/192 (100%)
Strand = Plus / Plus


Query: 695 atcaagatcaaaatgatgacgacaacattcaagaattctcacatgtagcacttagaatcc 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 atcaagatcaaaatgatgacgacaacattcaagaattctcacatgtagcacttagaatcc 754


Query: 755 tatcaaatcatggttatagatatacttgtatctatagattcagagtacatggttatcgca 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tatcaaatcatggttatagatatacttgtatctatagattcagagtacatggttatcgca 814


Query: 815 attcctcatccagaacaagaacaaatacaaattattcaagaggaacaatcttttaaacaa 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 attcctcatccagaacaagaacaaatacaaattattcaagaggaacaatcttttaaacaa 874


Query: 875 gaagagattaat 886
||||||||||||
Sbjct: 875 gaagagattaat 886


Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus


Query: 941 tctgatgaattataaattataagagattttgg 972
||||||||||||||||||||||||||||||||
Sbjct: 941 tctgatgaattataaattataagagattttgg 972


>Contig-U08227-1 (Contig-U08227-1Q) /CSM_Contig/Contig-U08227-1Q.Seq.d
Length = 1211

Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus


Query: 429 agtggtagtggtagtggtagtggtggt 455
|||||||||||||||||||||||||||
Sbjct: 804 agtggtagtggtagtggtagtggtggt 830


Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus


Query: 429 agtggtagtggtagtggtagtggt 452
||||||||||||||||||||||||
Sbjct: 798 agtggtagtggtagtggtagtggt 821


Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus


Query: 429 agtggtagtggtagtggtagtggt 452
||||||||||||||||||||||||
Sbjct: 780 agtggtagtggtagtggtagtggt 803


Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus


Query: 429 agtggtagtggtagtggtagtggt 452
||||||||||||||||||||||||
Sbjct: 792 agtggtagtggtagtggtagtggt 815


Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus


Query: 429 agtggtagtggtagtggtagtggt 452
||||||||||||||||||||||||
Sbjct: 786 agtggtagtggtagtggtagtggt 809


Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 430 gtggtagtggtagtggtagtggt 452
|||||||||||||||||||||||
Sbjct: 775 gtggtagtggtagtggtagtggt 797


Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 431 tggtagtggtagtgg 445
|||||||||||||||
Sbjct: 50 tggtagtggtagtgg 64


Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 437 tggtagtggtagtgg 451
|||||||||||||||
Sbjct: 50 tggtagtggtagtgg 64


>Contig-U11524-1 (Contig-U11524-1Q) /CSM_Contig/Contig-U11524-1Q.Seq.d
Length = 1326

Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus


Query: 428 aagtggtagtggtagtggtagtggtg 453
||||||||||||||||||||||||||
Sbjct: 785 aagtggtagtggtagtggtagtggtg 810


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,630
Number of Sequences: 6905
Number of extensions: 12630
Number of successful extensions: 2023
Number of sequences better than 10.0: 298
length of query: 998
length of database: 5,674,871
effective HSP length: 16
effective length of query: 982
effective length of database: 5,564,391
effective search space: 5464231962
effective search space used: 5464231962
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.15
Homology vs DNA
Query= Contig-U09164-1 (Contig-U09164-1Q) /CSM_Contig/Contig-U09164-1Q.Seq.d
(998 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ415009) Dictyostelium discoideum cDNA clone:ddv21l01, 5' ... 1207 0.0 1
(AU061131) Dictyostelium discoideum slug cDNA, clone SLD323. 617 e-172 1
(AU052440) Dictyostelium discoideum slug cDNA, clone SLD323. 232 e-109 3
(BJ433226) Dictyostelium discoideum cDNA clone:ddv21l01, 3' ... 315 1e-81 2
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 56 7e-07 4
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 60 2e-04 1
(CT030231) Mouse DNA sequence from clone RP24-331M15 on chro... 56 0.003 1
(CT010470) Mouse DNA sequence from clone RP23-313D12 on chro... 56 0.003 1
(AC154355) Mus musculus BAC clone RP23-220N4 from 13, comple... 56 0.003 1
(AC154204) Mus musculus BAC clone RP24-393D5 from chromosome... 56 0.003 1
(AC125395) Mus musculus BAC clone RP23-213J1 from chromosome... 56 0.003 1
(AC121095) Mus musculus chromosome 14, clone RP24-324H17, co... 56 0.003 1
(AC114593) Mus musculus chromosome 14, clone RP23-44B17, com... 56 0.003 1
(EU094826) Humulus lupulus clone ACC2-P6-6 microsatellite se... 56 0.003 1
(BX294013) Neurospora crassa DNA linkage group V Cosmid cont... 56 0.003 1
(AY764183) Aplysia californica syntaxin mRNA, complete cds. 56 0.003 1
(AC159443) Trypanosoma brucei chromosome 5 clone RPCI93-30H1... 56 0.003 1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 56 0.003 1
(AC162362) Mus musculus chromosome 5 clone RP23-24M15 map 5,... 56 0.003 1
(AC206753) Zea mays chromosome 2 clone ZMMBBb-566G2; ZMMBBb0... 56 0.003 1
(AC174734) Strongylocentrotus purpuratus clone R3-1115F23, W... 56 0.003 1
(AQ639424) 927P1-2B11.TV 927P1 Trypanosoma brucei genomic cl... 56 0.003 1
(FH348014) CHO_OF4264xc19f1.ab1 CHO_OF4 Nicotiana tabacum ge... 56 0.003 1
(FH141844) CHO_OF3711xc17r1.ab1 CHO_OF3 Nicotiana tabacum ge... 56 0.003 1
(ER280954) 1095595489514 Global-Ocean-Sampling_GS-33-01-01-1... 56 0.003 1
(ER197365) 1095522321067 Global-Ocean-Sampling_GS-33-01-01-1... 56 0.003 1
(DX871512) ZMMBLf0001F18.f ZMMBLf Zea mays genomic clone ZMM... 56 0.003 1
(DH490983) Monosiga ovata DNA, fosmid clone: MOF-051F21, gen... 56 0.003 1
(AU061406) Dictyostelium discoideum slug cDNA, clone SLE128. 56 0.003 1
(C23751) Dictyostelium discoideum gamete cDNA, clone FC-AE17. 56 0.003 1
(BM169307) EST571830 PyBS Plasmodium yoelii yoelii cDNA clon... 56 0.003 1
(BM166319) EST568842 PyBS Plasmodium yoelii yoelii cDNA clon... 56 0.003 1
(BM164357) EST566880 PyBS Plasmodium yoelii yoelii cDNA clon... 56 0.003 1
(BM162778) EST565290 PyBS Plasmodium yoelii yoelii cDNA clon... 56 0.003 1
(BI556463) 603237209F1 NCI_CGAP_Mam3 Mus musculus cDNA clone... 56 0.003 1
(FG469329) 020217KAKA006075HT (KAKA) Dormant kiwifruit buds ... 56 0.003 1
(FG467374) 011203KAKA003855HT (KAKA) Dormant kiwifruit buds ... 56 0.003 1
(FG147444) AGN_RPC005xg11f1.ab1 AGN_RPC Nicotiana tabacum cD... 56 0.003 1
(FE772218) CCAG6530.g1 CCAG Petrolisthes cinctipes heart, gi... 56 0.003 1
(EY300166) CAWX14866.fwd CAWX Helobdella robusta Primary Ear... 56 0.003 1
(EY300165) CAWX14866.rev CAWX Helobdella robusta Primary Ear... 56 0.003 1
(AR545847) Sequence 978 from patent US 6747137. 54 0.006 2
(AC098226) Rattus norvegicus clone CH230-56K13, *** SEQUENCI... 48 0.009 3
(AL807383) Mouse DNA sequence from clone RP23-286N14 on chro... 54 0.010 1
(AL663083) Mouse DNA sequence from clone RP23-280G3 on chrom... 54 0.010 1
(AC161216) Mus musculus chromosome 7, clone RP23-8K23, compl... 54 0.010 1
(AC154842) Mus musculus BAC clone RP23-55C11 from chromosome... 54 0.010 1
(AC154545) Mus musculus BAC clone RP23-431G16 from chromosom... 54 0.010 1
(AC153566) Mus musculus 10 BAC RP23-5H4 (Roswell Park Cancer... 54 0.010 1
(AC140337) Mus musculus BAC clone RP23-238H7 from 1, complet... 54 0.010 1
(AC118003) Mus musculus chromosome 5, clone RP23-146G20, com... 54 0.010 1
(AC116815) Mus musculus chromosome 5, clone RP24-357H22, com... 54 0.010 1
(AC115742) Mus musculus chromosome 7, clone RP23-477E13, com... 54 0.010 1
(AC110551) Mus musculus chromosome 7, clone RP23-245P16, com... 54 0.010 1
(EU094835) Humulus lupulus clone ACC2-E14-4 microsatellite s... 54 0.010 1
(AP007167) Aspergillus oryzae RIB40 genomic DNA, SC020. 54 0.010 1
(AY392443) Dictyostelium discoideum possible endotoxin gene,... 54 0.010 1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 54 0.010 1
(AL049849) Homo sapiens chromosome 21 BAC B1L1C6. 54 0.010 1
(AC157579) Mus musculus chromosome 1 clone RP23-14E16 map 1,... 54 0.010 1
(AC131143) Rattus norvegicus clone CH230-76E20, *** SEQUENCI... 54 0.010 1
(AC127156) Rattus norvegicus clone CH230-7B10, *** SEQUENCIN... 54 0.010 1
(AC120978) Rattus norvegicus clone CH230-515P13, WORKING DRA... 54 0.010 1
(AC119130) Rattus norvegicus clone CH230-414I23, *** SEQUENC... 54 0.010 1
(AC115510) Rattus norvegicus clone CH230-383C9, *** SEQUENCI... 54 0.010 1
(AC112086) Rattus norvegicus clone CH230-332D11, *** SEQUENC... 54 0.010 1
(AC095424) Rattus norvegicus clone CH230-7A8, *** SEQUENCING... 54 0.010 1
(AC201183) Strongylocentrotus purpuratus clone R3-14O10, WOR... 54 0.010 1
(AC184179) Strongylocentrotus purpuratus clone R3-6C4, WORKI... 54 0.010 1
(AC181725) Strongylocentrotus purpuratus clone R3-1039D03, W... 54 0.010 1
(AC181321) Strongylocentrotus purpuratus clone R3-115E19, WO... 54 0.010 1
(AC181279) Strongylocentrotus purpuratus clone R3-4015J17, W... 54 0.010 1
(AC181195) Strongylocentrotus purpuratus clone R3-12D21, WOR... 54 0.010 1
(AC181102) Strongylocentrotus purpuratus clone R3-3047K03, W... 54 0.010 1
(AC181062) Strongylocentrotus purpuratus clone R3-3050B8, WO... 54 0.010 1
(AC180587) Strongylocentrotus purpuratus clone R3-3094G12, W... 54 0.010 1
(AC179836) Strongylocentrotus purpuratus clone R3-1012D6, WO... 54 0.010 1
(AC179606) Strongylocentrotus purpuratus clone R3-1028P05, W... 54 0.010 1
(AC179481) Strongylocentrotus purpuratus clone R3-63M7, WORK... 54 0.010 1
(AC179091) Strongylocentrotus purpuratus clone R3-4010A15, W... 54 0.010 1
(AC178824) Strongylocentrotus purpuratus clone R3-29G2, WORK... 54 0.010 1
(AC178738) Strongylocentrotus purpuratus clone R3-13L11, WOR... 54 0.010 1
(AC178238) Strongylocentrotus purpuratus clone R3-3086D15, W... 54 0.010 1
(AC177698) Strongylocentrotus purpuratus clone R3-1011O24, W... 54 0.010 1
(AC177654) Strongylocentrotus purpuratus clone R3-3057A5, WO... 54 0.010 1
(AC177333) Strongylocentrotus purpuratus clone R3-1032L15, W... 54 0.010 1
(AC177073) Strongylocentrotus purpuratus clone R3-4004K17, W... 54 0.010 1
(AC176776) Strongylocentrotus purpuratus clone R3-3104K2, WO... 54 0.010 1
(AC176229) Strongylocentrotus purpuratus clone R3-3063A10, W... 54 0.010 1
(AC175949) Strongylocentrotus purpuratus clone R3-3038B20, W... 54 0.010 1
(AC174135) Strongylocentrotus purpuratus clone R3-1004A20, W... 54 0.010 1
(AC173635) Strongylocentrotus purpuratus clone R3-3028I10, *... 54 0.010 1
(AC172308) Strongylocentrotus purpuratus clone R3-14N10, WOR... 54 0.010 1
(AC025036) Mus musculus chromosome 11 clone RP23-280G3, *** ... 54 0.010 1
(BH094533) RPCI-24-357H22.TV RPCI-24 Mus musculus genomic cl... 54 0.010 1
(DH477779) Monosiga ovata DNA, fosmid clone: MOF-028J10, gen... 54 0.010 1
(DE222678) Trifolium pratense DNA, clone:RCG14187. 54 0.010 1
(DE121990) Oryzias latipes DNA, forward end of BAC clone: Md... 54 0.010 1
(CR165209) Forward strand read from insert in 5'HPRT inserti... 54 0.010 1
(CR049178) Forward strand read from insert in 5'HPRT inserti... 54 0.010 1

>(BJ415009) Dictyostelium discoideum cDNA clone:ddv21l01, 5' end,
single read.
Length = 609

Score = 1207 bits (609), Expect = 0.0
Identities = 609/609 (100%)
Strand = Plus / Plus


Query: 1 catccctcttgaaattgactcaggaatataagcaattggaagagagattaaaagagttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 catccctcttgaaattgactcaggaatataagcaattggaagagagattaaaagagttta 60


Query: 61 gtagcaaattacaacaatccatctcgtcatcgtcaatggaccaattcgaatcttggaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtagcaaattacaacaatccatctcgtcatcgtcaatggaccaattcgaatcttggaaat 120


Query: 121 tggttttcattaaagatatcgaggaaagaattaacaaggaatctagcaaactcacaaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tggttttcattaaagatatcgaggaaagaattaacaaggaatctagcaaactcacaaacc 180


Query: 181 aatacattcaattaactcaacaatttacaaagattcaatcattcattaaagataatccat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aatacattcaattaactcaacaatttacaaagattcaatcattcattaaagataatccat 240


Query: 241 caattgattctctaacaaatacaatcgaatcgctcgaaggtattaaactattgattgaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caattgattctctaacaaatacaatcgaatcgctcgaaggtattaaactattgattgaag 300


Query: 301 acatacttgaggtttatagtgctgataagattgcaaaagttgattatgctttaggtttag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acatacttgaggtttatagtgctgataagattgcaaaagttgattatgctttaggtttag 360


Query: 361 ctggtgcttctattgaatataatgcattacattatagagttagtgaaacttatccaccaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctggtgcttctattgaatataatgcattacattatagagttagtgaaacttatccaccaa 420


Query: 421 ttaaaggaagtggtagtggtagtggtagtggtggtgccaatggtaatagtttaggtttat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttaaaggaagtggtagtggtagtggtagtggtggtgccaatggtaatagtttaggtttat 480


Query: 481 attattataatttagctacaaattggatattcccacaaccaaaaccaaacccacctgaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 attattataatttagctacaaattggatattcccacaaccaaaaccaaacccacctgaaa 540


Query: 541 ctatattggatccaatggttaatactggttcatgttggggtttctatactggtaatggca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctatattggatccaatggttaatactggttcatgttggggtttctatactggtaatggca 600


Query: 601 ccattgtaa 609
|||||||||
Sbjct: 601 ccattgtaa 609

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 909,987,640
Number of extensions: 53320089
Number of successful extensions: 4526818
Number of sequences better than 10.0: 1195
Length of query: 998
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 974
Effective length of database: 97,308,875,965
Effective search space: 94778845189910
Effective search space used: 94778845189910
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.25
Homology vs Protein
Query= Contig-U09164-1 (Contig-U09164-1Q) /CSM_Contig/Contig-U09164-1Q.Seq.d
(998 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

EU964563_1(EU964563|pid:none) Zea mays clone 280023 sad1-unc84-l... 45 0.004
BC095900_1(BC095900|pid:none) Danio rerio zgc:92151, mRNA (cDNA ... 43 0.015
BC110131_1(BC110131|pid:none) Bos taurus sperm associated antige... 43 0.015
BC155145_1(BC155145|pid:none) Danio rerio zgc:92151, mRNA (cDNA ... 43 0.015
AK167686_1(AK167686|pid:none) Mus musculus 14 days pregnant adul... 42 0.025
AL121756_1(AL121756|pid:none) Human DNA sequence from clone RP4-... 42 0.025
(Q8TC36) RecName: Full=Sperm-associated antigen 4-like protein; ... 42 0.025
AY682989_1(AY682989|pid:none) Mus musculus SUN1 mRNA, complete c... 42 0.043
(Q9D666) RecName: Full=Protein unc-84 homolog A; AltName: Full=S... 42 0.043
BC030330_1(BC030330|pid:none) Mus musculus unc-84 homolog A (C. ... 42 0.043
AK036187_1(AK036187|pid:none) Mus musculus 16 days neonate cereb... 42 0.043
AF343752_1(AF343752|pid:none) Mus musculus sad1-unc84-like prote... 42 0.043
AF202724_1(AF202724|pid:none) Homo sapiens Sad1 unc-84 domain pr... 41 0.056
CR859501_1(CR859501|pid:none) Pongo abelii mRNA; cDNA DKFZp459P0... 41 0.056
(O94901) RecName: Full=Protein unc-84 homolog A; AltName: Full=S... 41 0.056
BC142707_1(BC142707|pid:none) Homo sapiens unc-84 homolog A (C. ... 41 0.056
AK022816_1(AK022816|pid:none) Homo sapiens cDNA FLJ12754 fis, cl... 41 0.056
AB463335_1(AB463335|pid:none) Synthetic construct DNA, clone: pF... 41 0.056
AB018353_1(AB018353|pid:none) Homo sapiens mRNA for KIAA0810 pro... 41 0.056
CR861408_1(CR861408|pid:none) Pongo abelii mRNA; cDNA DKFZp459O1... 41 0.056
AK302896_1(AK302896|pid:none) Homo sapiens cDNA FLJ58818 complet... 41 0.056
BC085844_1(BC085844|pid:none) Rattus norvegicus unc-84 homolog A... 41 0.073
AK026281_1(AK026281|pid:none) Homo sapiens cDNA: FLJ22628 fis, c... 40 0.16
(Q8BJS4) RecName: Full=Protein unc-84 homolog B; AltName: Full=S... 40 0.16
AL354795_2(AL354795|pid:none) Human DNA sequence from clone RP11... 40 0.16
AY333283_1(AY333283|pid:none) Homo sapiens transient receptor po... 40 0.16
(Q9BX84) RecName: Full=Transient receptor potential cation chann... 40 0.16
AK156246_1(AK156246|pid:none) Mus musculus activated spleen cDNA... 40 0.16
AK172996_1(AK172996|pid:none) Mus musculus premature mRNA for mK... 40 0.16
BC148095_1(BC148095|pid:none) Bos taurus unc-84 homolog B (C. el... 39 0.28
FN316906_1(FN316906|pid:none) Schistosoma japonicum isolate Anhu... 38 0.47
AK171058_1(AK171058|pid:none) Mus musculus NOD-derived CD11c +ve... 38 0.47
(Q20745) RecName: Full=Nuclear migration and anchoring protein u... 38 0.62
T22608(T22608)hypothetical protein F54B11.3 - Caenorhabditis ele... 38 0.62
BC111549_1(BC111549|pid:none) Homo sapiens unc-84 homolog B (C. ... 37 0.81
AM392760_1(AM392760|pid:none) Synthetic construct Homo sapiens c... 37 0.81
BC069253_1(BC069253|pid:none) Homo sapiens unc-84 homolog B (C. ... 37 0.81
BC030684_1(BC030684|pid:none) Homo sapiens unc-84 homolog B (C. ... 37 0.81
AF202723_1(AF202723|pid:none) Homo sapiens Sad1 unc-84 domain pr... 37 0.81
AK295787_1(AK295787|pid:none) Homo sapiens cDNA FLJ59542 complet... 37 0.81
BC094797_1(BC094797|pid:none) Homo sapiens unc-84 homolog B (C. ... 37 0.81
(Q9UH99) RecName: Full=Protein unc-84 homolog B; AltName: Full=S... 37 0.81
AL021707_16(AL021707|pid:none) Human DNA sequence from clone RP3... 37 1.4
AY776160_1(AY776160|pid:none) Homo sapiens clone Ctg124 unknown ... 36 2.4
AK080116_1(AK080116|pid:none) Mus musculus adult male aorta and ... 36 2.4
AM180355_2023(AM180355|pid:none) Clostridium difficile 630 compl... 34 6.8

>EU964563_1(EU964563|pid:none) Zea mays clone 280023 sad1-unc84-like
protein mRNA, complete cds.
Length = 462

Score = 45.1 bits (105), Expect = 0.004
Identities = 28/105 (26%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Frame = +3

Query: 117 KLVFIKDIEERINKESSKLTNQYIQLTQQFTKIQSFIKDNPSIDSLTNTIESLEGIKLLI 296
K+ ++D ++++K ++L++ +F +I S +K + I SL+ I+L
Sbjct: 208 KMKILEDKTDKLDKSLAELSDMGFLSKNEFEEILSQLKKKKGFGGTDDEI-SLDDIRLYA 266

Query: 297 EDILEV----YSADKIAKVDYALGLAGASIEYNALHYRVSETYPP 419
+D++E+ +SAD + VDYALG GA + ++ + + Y P
Sbjct: 267 KDVVEMEIARHSADGLGMVDYALGSGGAKVVSHSEPFMNGKNYLP 311

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,113,419,556
Number of extensions: 16625713
Number of successful extensions: 42043
Number of sequences better than 10.0: 46
Number of HSP's gapped: 42005
Number of HSP's successfully gapped: 110
Length of query: 332
Length of database: 1,040,966,779
Length adjustment: 129
Effective length of query: 203
Effective length of database: 627,614,014
Effective search space: 127405644842
Effective search space used: 127405644842
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.30 gvh: 0.39 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 1.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
40.0 %: nuclear
12.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: plasma membrane

>> prediction for Contig-U09164-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0