| Contig-U09161-1 |
| Contig ID |
Contig-U09161-1 |
| Contig update |
2002. 9.13 |
| Contig sequence |
 |
| Gap |
gap included |
| Contig length |
982 |
| Chromosome number (1..6, M) |
- |
| Chromosome length |
- |
| Start point |
- |
| End point |
- |
| Strand (PLUS/MINUS) |
- |
| Number of clones |
2 |
| Number of EST |
3 |
| Link to clone list |
U09161 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11.15 |
| Homology vs DNA |
Query= Contig-U09161-1 (Contig-U09161-1Q) /CSM_Contig/Contig-U09161-1Q.Seq.d
(992 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU052363) Dictyostelium discoideum slug cDNA, clone SLD201. 329 e-148 3
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 329 e-148 5
(BJ433594) Dictyostelium discoideum cDNA clone:ddv22i10, 3' ... 460 e-139 2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 460 e-130 8
(AU061104) Dictyostelium discoideum slug cDNA, clone SLD201. 74 1e-08 1
(AC105075) Mus musculus chromosome 1, clone RP23-366P11, com... 50 0.16 1
(AC176500) Strongylocentrotus purpuratus clone R3-114J14, WO... 48 0.61 5
(AP008207) Oryza sativa (japonica cultivar-group) genomic DN... 48 0.64 1
(AP003734) Oryza sativa Japonica Group genomic DNA, chromoso... 48 0.64 1
(AC221591) Bos taurus clone CH240-391C16, WORKING DRAFT SEQU... 48 0.64 1
(AC201295) Strongylocentrotus purpuratus clone R3-16G9, WORK... 48 0.64 1
(AC178925) Strongylocentrotus purpuratus clone R3-3115G3, WO... 48 0.64 1
(AC177344) Strongylocentrotus purpuratus clone R3-1032I4, WO... 48 0.64 1
(EB207686) PEG002-C-008925-301 Normalized Pedal-Pleural Gang... 48 0.64 1
(CT027763) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 1.3 2
(BX957244) Zebrafish DNA sequence from clone CH211-13C6 in l... 34 1.3 2
(AC027360) Homo sapiens clone RP11-21E6, WORKING DRAFT SEQUE... 34 1.3 2
(AL353673) Human DNA sequence from clone RP11-443H16 on chro... 34 1.4 2
(DE397195) Bombyx mori genomic DNA, BAC clone:18J1A. 40 1.4 2
(AL954675) Mouse DNA sequence from clone RP24-468P16 on chro... 46 2.5 1
(AC108305) Rattus norvegicus clone CH230-147B15, *** SEQUENC... 46 2.5 1
(AC106500) Rattus norvegicus clone CH230-188I12, WORKING DRA... 46 2.5 1
(AC097624) Rattus norvegicus clone CH230-35A2, WORKING DRAFT... 46 2.5 1
(ER496756) 1093015351412 Global-Ocean-Sampling_GS-35-01-01-1... 46 2.5 1
(CC278017) CH261-95I1_RM1.1 CH261 Gallus gallus genomic clon... 46 2.5 1
(BZ276524) CH230-501C9.TV CHORI-230 Segment 2 Rattus norvegi... 46 2.5 1
(BZ129684) CH230-440A20.TJ CHORI-230 Segment 2 Rattus norveg... 46 2.5 1
(AC011064) Drosophila melanogaster strain y chromosome X clo... 36 7.8 6
(AC126908) Rattus norvegicus clone CH230-148A3, *** SEQUENCI... 36 8.6 5
(CU138525) Zebrafish DNA sequence from clone DKEY-229J15 in ... 44 10.0 1
(AC145116) Mus musculus BAC clone RP23-434H14 from 6, comple... 44 10.0 1
(AC068908) Mus musculus BAC Clone 389o18 RPCI-23, complete s... 44 10.0 1
(AC202678) Macaca mulatta BAC CH250-38L21 () complete seque... 44 10.0 1
(AF016674) Caenorhabditis elegans cosmid C03H5, complete seq... 44 10.0 1
(AF016653) Caenorhabditis elegans cosmid C41D7, complete seq... 44 10.0 1
(AC153416) Bos taurus clone CH240-9L3, WORKING DRAFT SEQUENC... 44 10.0 1
(AC120735) Rattus norvegicus clone CH230-255L7, *** SEQUENCI... 44 10.0 1
(AC114133) Rattus norvegicus clone CH230-132M15, *** SEQUENC... 44 10.0 1
(CU861459) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 10.0 1
(CU640411) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 10.0 1
(AC231577) Monodelphis domestica clone VMRC18-120D19, WORKIN... 44 10.0 1
(AC225291) Monodelphis domestica clone VMRC18-426B6, WORKING... 44 10.0 1
(AC220111) Bos taurus clone CH240-363B19, WORKING DRAFT SEQU... 44 10.0 1
(AC172123) Bos taurus clone CH240-332F23, WORKING DRAFT SEQU... 44 10.0 1
(AC006765) Caenorhabditis elegans clone Y43H11, *** SEQUENCI... 44 10.0 1
(BH180035) 016_I_01-21 SmBAC1 Schistosoma mansoni genomic cl... 44 10.0 1
(EK415632) 1095515460573 Global-Ocean-Sampling_GS-31-01-01-1... 44 10.0 1
(EK322864) 1095462435169 Global-Ocean-Sampling_GS-31-01-01-1... 44 10.0 1
(EK269821) 1095462252389 Global-Ocean-Sampling_GS-31-01-01-1... 44 10.0 1
(AL616989) T7 end of clone 016AE01 of library SmBAC1 from st... 44 10.0 1
(EI490983) PV_GBa0107B23.f PV_GBa Phaseolus vulgaris genomic... 44 10.0 1
(DX999120) CHORI103-53L5.TV CHORI103 Schistosoma mansoni gen... 44 10.0 1
(DU675006) Bst007548 lambda03 Boechera stricta genomic clone... 44 10.0 1
(CT866978) Equus caballus GSS, BAC clone CH241-16K22, SP6 en... 44 10.0 1
(CC850484) NDL.22A5.SP6 Notre Dame Liverpool Aedes aegypti g... 44 10.0 1
(BH769165) BMBAC364C01SP6_PSU Brugia malayi Genomic Bac Libr... 44 10.0 1
(BH769148) BMBAC364B04SP6_PSU Brugia malayi Genomic Bac Libr... 44 10.0 1
(CD809833) 536 Lingulodinium polyedrum Lingulodinium polyedr... 44 10.0 1
>(AU052363) Dictyostelium discoideum slug cDNA, clone SLD201.
Length = 435
Score = 329 bits (166), Expect(3) = e-148
Identities = 166/166 (100%)
Strand = Plus / Plus
Query: 753 gaaaattgtacctttaatagagtttcaataacatctaaatcaaattcaagacttttattc 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gaaaattgtacctttaatagagtttcaataacatctaaatcaaattcaagacttttattc 254
Query: 813 ttttcatcaaaacaaattcaagaaccaatatttaaatatggaccatttgtaatgagtgat 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ttttcatcaaaacaaattcaagaaccaatatttaaatatggaccatttgtaatgagtgat 314
Query: 873 atgaatgatattcatcaatgtttcattgattttgaatatggtcttt 918
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 atgaatgatattcatcaatgtttcattgattttgaatatggtcttt 360
Score = 188 bits (95), Expect(3) = e-148
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 559 tttggttcatttttattggttttagatggtccagtttcaataaataattcaaaactattg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttggttcatttttattggttttagatggtccagtttcaataaataattcaaaactattg 60
Query: 619 gtcctggaaaacttattgtatttaatagaaaatca 653
|||||||||||||||||||||||||||||||||||
Sbjct: 61 gtcctggaaaacttattgtatttaatagaaaatca 95
Score = 71.9 bits (36), Expect(3) = e-148
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 957 caagattttgtaaatttaaataatctttaaatcaaa 992
||||||||||||||||||||||||||||||||||||
Sbjct: 399 caagattttgtaaatttaaataatctttaaatcaaa 434
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 829,725,476
Number of extensions: 51780946
Number of successful extensions: 4185156
Number of sequences better than 10.0: 58
Length of query: 992
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 968
Effective length of database: 97,308,875,965
Effective search space: 94194991934120
Effective search space used: 94194991934120
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 6.25 |
| Homology vs Protein |
Query= Contig-U09161-1 (Contig-U09161-1Q) /CSM_Contig/Contig-U09161-1Q.Seq.d
(992 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM181176_3560(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 48 5e-04
CP000076_4019(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 47 0.001
FM954973_1366(FM954973|pid:none) Vibrio splendidus LGP32 chromos... 46 0.002
CP001280_2501(CP001280|pid:none) Methylocella silvestris BL2, co... 45 0.003
AM902716_7(AM902716|pid:none) Bordetella petrii strain DSM 12804... 44 0.007
CP001132_2752(CP001132|pid:none) Acidithiobacillus ferrooxidans ... 44 0.009
CP000438_2670(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA... 44 0.009
CP000438_1760(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA... 44 0.009
AE016796_1137(AE016796|pid:none) Vibrio vulnificus CMCP6 chromos... 44 0.009
(Q9I163) RecName: Full=Pirin-like protein PA2418; &AE004091_241... 44 0.009
AY658741_1(AY658741|pid:none) Synthetic construct Peudomonas aer... 44 0.011
CP000267_793(CP000267|pid:none) Rhodoferax ferrireducens T118, c... 43 0.015
AM286690_25(AM286690|pid:none) Alcanivorax borkumensis SK2, comp... 43 0.015
(Q9HLU2) Pirin-like protein Ta0133. &AL445063_131(AL445063|pid:... 43 0.019
CP000285_1767(CP000285|pid:none) Chromohalobacter salexigens DSM... 42 0.025
EF087865_1(EF087865|pid:none) Picea sitchensis clone WS02914_E04... 42 0.025
AE008922_2670(AE008922|pid:none) Xanthomonas campestris pv. camp... 42 0.025
CP000934_2367(CP000934|pid:none) Cellvibrio japonicus Ueda107, c... 42 0.025
CP001103_1851(CP001103|pid:none) Alteromonas macleodii 'Deep eco... 42 0.032
CP000282_3733(CP000282|pid:none) Saccharophagus degradans 2-40, ... 42 0.032
CP000058_1551(CP000058|pid:none) Pseudomonas syringae pv. phaseo... 42 0.032
(Q9UUC9) RecName: Full=Mitochondrial distribution and morphology... 42 0.032
AE017261_1149(AE017261|pid:none) Picrophilus torridus DSM 9790, ... 42 0.032
CP000086_1719(CP000086|pid:none) Burkholderia thailandensis E264... 42 0.042
CP000304_1410(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 42 0.042
CP000790_1677(CP000790|pid:none) Vibrio harveyi ATCC BAA-1116 ch... 42 0.042
AM286415_2162(AM286415|pid:none) Yersinia enterocolitica subsp. ... 42 0.042
AL954747_2145(AL954747|pid:none) Nitrosomonas europaea ATCC 1971... 42 0.042
CP001111_2980(CP001111|pid:none) Stenotrophomonas maltophilia R5... 42 0.042
AP009385_1069(AP009385|pid:none) Burkholderia multivorans ATCC 1... 42 0.042
CU633749_859(CU633749|pid:none) Cupriavidus taiwanensis str. LMG... 42 0.042
BA000043_1651(BA000043|pid:none) Geobacillus kaustophilus HTA426... 41 0.055
CP001111_2189(CP001111|pid:none) Stenotrophomonas maltophilia R5... 41 0.055
AE010300_3852(AE010300|pid:none) Leptospira interrogans serovar ... 41 0.055
AM260479_933(AM260479|pid:none) Ralstonia eutropha H16 chromosom... 41 0.055
CP000572_2787(CP000572|pid:none) Burkholderia pseudomallei 1106a... 41 0.055
CP000449_440(CP000449|pid:none) Maricaulis maris MCS10, complete... 41 0.055
CP000378_667(CP000378|pid:none) Burkholderia cenocepacia AU 1054... 41 0.072
CP001025_1022(CP001025|pid:none) Burkholderia ambifaria MC40-6 c... 41 0.072
CP000440_1026(CP000440|pid:none) Burkholderia ambifaria AMMD chr... 41 0.072
CP000109_2000(CP000109|pid:none) Thiomicrospira crunogena XCL-2,... 41 0.072
CP000557_1480(CP000557|pid:none) Geobacillus thermodenitrificans... 41 0.072
CP000926_2527(CP000926|pid:none) Pseudomonas putida GB-1, comple... 40 0.095
EU416202_1(EU416202|pid:none) Uncultured bacterium clone fsx11 p... 40 0.095
CU638743_446(CU638743|pid:none) Podospora anserina genomic DNA c... 40 0.095
CP000090_2476(CP000090|pid:none) Ralstonia eutropha JMP134 chrom... 40 0.095
AM747720_1028(AM747720|pid:none) Burkholderia cenocepacia J2315 ... 40 0.12
CP001108_1628(CP001108|pid:none) Prosthecochloris aestuarii DSM ... 40 0.12
CP001339_1046(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, ... 40 0.12
(P58112) RecName: Full=Pirin-like protein CC_0481; &AE005673_48... 40 0.12
AM942759_2181(AM942759|pid:none) Proteus mirabilis strain HI4320... 40 0.16
CP000967_3683(CP000967|pid:none) Xanthomonas oryzae pv. oryzae P... 40 0.16
(Q9ZW82) RecName: Full=Pirin-like protein At2g43120; &AK228809_... 40 0.16
AM743169_2572(AM743169|pid:none) Stenotrophomonas maltophilia K2... 40 0.16
CP001022_2613(CP001022|pid:none) Exiguobacterium sibiricum 255-1... 40 0.16
AE009952_2138(AE009952|pid:none) Yersinia pestis KIM, complete g... 40 0.16
C84862(C84862)probable probable pirin protein [imported] - Arabi... 40 0.16
AB0262(AB0262) conserved hypothetical protein YPO2149 [imported]... 40 0.16
CP000113_4715(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 40 0.16
CP000614_1053(CP000614|pid:none) Burkholderia vietnamiensis G4 c... 39 0.21
CP000127_1399(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 39 0.21
CP001321_1262(CP001321|pid:none) Haemophilus parasuis SH0165, co... 39 0.27
AE015451_3372(AE015451|pid:none) Pseudomonas putida KT2440 compl... 39 0.27
BA000045_2532(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ... 39 0.27
CP000091_1214(CP000091|pid:none) Ralstonia eutropha JMP134 chrom... 39 0.27
CU633900_375(CU633900|pid:none) Podospora anserina genomic DNA c... 39 0.36
CR543861_3095(CR543861|pid:none) Acinetobacter sp. ADP1 complete... 39 0.36
FM992688_579(FM992688|pid:none) Candida dubliniensis CD36 chromo... 39 0.36
CP000348_352(CP000348|pid:none) Leptospira borgpetersenii serova... 39 0.36
CP000589_241(CP000589|pid:none) Ostreococcus lucimarinus CCE9901... 39 0.36
CU914168_585(CU914168|pid:none) Ralstonia solanacearum strain IP... 39 0.36
CP000116_1112(CP000116|pid:none) Thiobacillus denitrificans ATCC... 38 0.47
CP000510_2481(CP000510|pid:none) Psychromonas ingrahamii 37, com... 38 0.47
CU633749_1180(CU633749|pid:none) Cupriavidus taiwanensis str. LM... 38 0.47
AM746676_3386(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 38 0.47
CP000759_1226(CP000759|pid:none) Ochrobactrum anthropi ATCC 4918... 38 0.47
CU861906_547(CU861906|pid:none) Ralstonia solanacearum strain Mo... 38 0.47
CP001616_2875(CP001616|pid:none) Tolumonas auensis DSM 9187, com... 38 0.47
AL646052_541(AL646052|pid:none) Ralstonia solanacearum GMI1000 c... 38 0.47
AE016825_1920(AE016825|pid:none) Chromobacterium violaceum ATCC ... 38 0.47
(Q9LX45) RecName: Full=Putative pirin-like protein At3g59260; &... 38 0.47
CP001503_948(CP001503|pid:none) Burkholderia glumae BGR1 chromos... 38 0.61
FM178379_1200(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ... 38 0.61
CP000521_892(CP000521|pid:none) Acinetobacter baumannii ATCC 179... 38 0.61
CU468230_2465(CU468230|pid:none) Acinetobacter baumannii str. SD... 38 0.61
AP009385_2138(AP009385|pid:none) Burkholderia multivorans ATCC 1... 38 0.61
CP000113_2167(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 38 0.61
CP000614_2259(CP000614|pid:none) Burkholderia vietnamiensis G4 c... 38 0.61
CP000380_387(CP000380|pid:none) Burkholderia cenocepacia AU 1054... 37 0.80
CP000958_2207(CP000958|pid:none) Burkholderia cenocepacia MC0-3 ... 37 0.80
AM920437_1208(AM920437|pid:none) Penicillium chrysogenum Wiscons... 37 0.80
CP000151_2342(CP000151|pid:none) Burkholderia sp. 383 chromosome... 37 0.80
AE017354_13(AE017354|pid:none) Legionella pneumophila subsp. pne... 37 0.80
CP000555_2637(CP000555|pid:none) Methylibium petroleiphilum PM1,... 37 0.80
AP007155_1070(AP007155|pid:none) Aspergillus oryzae RIB40 genomi... 37 0.80
CP001025_2096(CP001025|pid:none) Burkholderia ambifaria MC40-6 c... 37 0.80
CP000682_1079(CP000682|pid:none) Metallosphaera sedula DSM 5348,... 37 0.80
CP000675_14(CP000675|pid:none) Legionella pneumophila str. Corby... 37 0.80
CR555306_2201(CR555306|pid:none) Azoarcus sp. EbN1 complete geno... 37 0.80
CP001068_412(CP001068|pid:none) Ralstonia pickettii 12J chromoso... 37 1.0
AM180252_289(AM180252|pid:none) Lawsonia intracellularis PHE/MN1... 37 1.0
CU207366_1122(CU207366|pid:none) Gramella forsetii KT0803 comple... 37 1.0
CP000647_1024(CP000647|pid:none) Klebsiella pneumoniae subsp. pn... 37 1.0
CP000026_1721(CP000026|pid:none) Salmonella enterica subsp. ente... 37 1.4
CP001052_1366(CP001052|pid:none) Burkholderia phytofirmans PsJN ... 37 1.4
AM920437_1966(AM920437|pid:none) Penicillium chrysogenum Wiscons... 37 1.4
CP000822_2138(CP000822|pid:none) Citrobacter koseri ATCC BAA-895... 37 1.4
BX640419_308(BX640419|pid:none) Bordetella pertussis strain Toha... 37 1.4
CP001120_976(CP001120|pid:none) Salmonella enterica subsp. enter... 37 1.4
AE006468_922(AE006468|pid:none) Salmonella enterica subsp. enter... 37 1.4
CP000270_1297(CP000270|pid:none) Burkholderia xenovorans LB400 c... 37 1.4
CP001127_995(CP001127|pid:none) Salmonella enterica subsp. enter... 37 1.4
CP001013_304(CP001013|pid:none) Leptothrix cholodnii SP-6, compl... 37 1.4
AE017180_821(AE017180|pid:none) Geobacter sulfurreducens PCA, co... 36 1.8
CP000473_6083(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 36 1.8
CP000481_1944(CP000481|pid:none) Acidothermus cellulolyticus 11B... 36 1.8
CP001196_1780(CP001196|pid:none) Oligotropha carboxidovorans OM5... 36 1.8
BX294149_202(BX294149|pid:none) Rhodopirellula baltica SH 1 comp... 36 1.8
CP000880_1938(CP000880|pid:none) Salmonella enterica subsp. ariz... 36 1.8
FM992688_544(FM992688|pid:none) Candida dubliniensis CD36 chromo... 36 1.8
AE009441_1853(AE009441|pid:none) Pyrobaculum aerophilum str. IM2... 36 1.8
CP000559_439(CP000559|pid:none) Methanocorpusculum labreanum Z, ... 36 2.3
AL939117_255(AL939117|pid:none) Streptomyces coelicolor A3(2) co... 36 2.3
CP000656_736(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, co... 36 2.3
CP000884_3930(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 36 2.3
CP000724_1406(CP000724|pid:none) Alkaliphilus metalliredigens QY... 36 2.3
AM747720_2291(AM747720|pid:none) Burkholderia cenocepacia J2315 ... 36 2.3
CP001097_539(CP001097|pid:none) Chlorobium limicola DSM 245, com... 36 2.3
AE017345_251(AE017345|pid:none) Cryptococcus neoformans var. neo... 35 3.0
CP000269_2813(CP000269|pid:none) Janthinobacterium sp. Marseille... 35 3.0
AC092852_26(AC092852|pid:none) Oryza sativa chromosome 3 BAC OSJ... 35 3.0
CP000626_271(CP000626|pid:none) Vibrio cholerae O395 chromosome ... 35 3.0
CP000384_84(CP000384|pid:none) Mycobacterium sp. MCS, complete g... 35 3.0
AP008957_4955(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 35 4.0
CP000450_685(CP000450|pid:none) Nitrosomonas eutropha C91, compl... 35 4.0
CP000325_3906(CP000325|pid:none) Mycobacterium ulcerans Agy99, c... 35 4.0
BA000023_2572(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA,... 35 4.0
CP001503_2412(CP001503|pid:none) Burkholderia glumae BGR1 chromo... 35 4.0
BC088499_1(BC088499|pid:none) Xenopus tropicalis pirin, mRNA (cD... 35 5.2
CP000891_897(CP000891|pid:none) Shewanella baltica OS195, comple... 35 5.2
CP000503_830(CP000503|pid:none) Shewanella sp. W3-18-1, complete... 35 5.2
CP001234_901(CP001234|pid:none) Vibrio cholerae M66-2 chromosome... 35 5.2
CP000753_848(CP000753|pid:none) Shewanella baltica OS185, comple... 35 5.2
EU967785_1(EU967785|pid:none) Zea mays clone 306052 pirin-like p... 35 5.2
CP000563_3409(CP000563|pid:none) Shewanella baltica OS155, compl... 35 5.2
BT062570_1(BT062570|pid:none) Zea mays full-length cDNA clone ZM... 35 5.2
BX284747_10(BX284747|pid:none) Neurospora crassa DNA linkage gro... 35 5.2
CR954209_258(CR954209|pid:none) Ostreococcus tauri strain OTTH05... 34 6.8
CP000472_3854(CP000472|pid:none) Shewanella piezotolerans WP3, c... 34 6.8
CR541822_1(CR541822|pid:none) Homo sapiens full open reading fra... 34 6.8
DQ000498_1(DQ000498|pid:none) Synthetic construct clone PSF:2029... 34 6.8
AM942759_3428(AM942759|pid:none) Proteus mirabilis strain HI4320... 34 6.8
CP000269_3306(CP000269|pid:none) Janthinobacterium sp. Marseille... 34 6.8
(O00625) RecName: Full=Pirin; &AX399859_1(AX399859|pid:none) &A... 34 6.8
CP001101_1727(CP001101|pid:none) Chlorobium phaeobacteroides BS1... 34 6.8
CP000302_2931(CP000302|pid:none) Shewanella denitrificans OS217,... 34 8.8
CP000284_2568(CP000284|pid:none) Methylobacillus flagellatus KT,... 34 8.8
CP000581_476(CP000581|pid:none) Ostreococcus lucimarinus CCE9901... 34 8.8
CP000830_2130(CP000830|pid:none) Dinoroseobacter shibae DFL 12, ... 34 8.8
CT971583_1703(CT971583|pid:none) Synechococcus WH7803 complete g... 34 8.8
>AM181176_3560(AM181176|pid:none) Pseudomonas fluorescens SBW25
complete genome.
Length = 286
Score = 48.1 bits (113), Expect = 5e-04
Identities = 20/49 (40%), Positives = 33/49 (67%)
Frame = +3
Query: 768 NRVSITSKSNSRLLFFSSKQIQEPIFKYGPFVMSDMNDIHQCFIDFEYG 914
+++S+ S ++++L S + I EPI +GPFVM+ +IHQ F DF+ G
Sbjct: 233 SQLSLASNDDAKVLLLSGEPIDEPIVGHGPFVMNTEQEIHQAFADFQSG 281
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 771,515,915
Number of extensions: 9456817
Number of successful extensions: 26552
Number of sequences better than 10.0: 160
Number of HSP's gapped: 26551
Number of HSP's successfully gapped: 160
Length of query: 330
Length of database: 1,040,966,779
Length adjustment: 129
Effective length of query: 201
Effective length of database: 627,614,014
Effective search space: 126150416814
Effective search space used: 126150416814
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
1 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
1 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |