| Contig-U01537-1 |
| Contig ID |
Contig-U01537-1 |
| Contig update |
2001. 8.29 |
| Contig sequence |
 |
| Gap |
gap included |
| Contig length |
1001 |
| Chromosome number (1..6, M) |
4 |
| Chromosome length |
5430582 |
| Start point |
4260751 |
| End point |
4261753 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
6 |
| Number of EST |
7 |
| Link to clone list |
U01537 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6. 7 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 4.30 |
| Homology vs DNA |
Query= Contig-U01537-1 (Contig-U01537-1Q) /CSM_Contig/Contig-U01537-1Q.Seq.d
(1011 letters)
Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(C84008) Dictyostelium discoideum slug cDNA, clone SSC228. 803 0.0 1
(C90280) Dictyostelium discoideum slug cDNA, clone SSI614. 611 0.0 2
(AU267829) Dictyostelium discoideum vegetative cDNA clone:VS... 460 0.0 2
(C90584) Dictyostelium discoideum slug cDNA, clone SSI807. 597 e-174 2
(AU073876) Dictyostelium discoideum slug cDNA, clone SSI614. 161 2e-51 2
(AL121724) Human DNA sequence from clone RP1-29P5 on chromos... 44 9e-04 5
(CP000817) Lysinibacillus sphaericus C3-41, complete genome. 56 0.003 1
(AL121784) Human chromosome 14 DNA sequence BAC R-305I3 of l... 48 0.44 2
(AC007374) Homo sapiens chromosome 14 clone RP11-325L17 map ... 48 0.46 2
(AG763483) Macaca fuscata fuscata DNA, clone: MSB2-234K16_F,... 48 0.66 1
(AG643410) Macaca fuscata fuscata DNA, clone: MSB2-053A23_F,... 48 0.66 1
(DB745183) Apis mellifera head cDNA, RIKEN full-length enric... 48 0.66 1
(DB739260) Apis mellifera head cDNA, RIKEN full-length enric... 48 0.66 1
(DB736881) Apis mellifera head cDNA, RIKEN full-length enric... 48 0.66 1
(DB735657) Apis mellifera head cDNA, RIKEN full-length enric... 48 0.66 1
(DB731209) Apis mellifera head cDNA, RIKEN full-length enric... 48 0.66 1
(DB730704) Apis mellifera head cDNA, RIKEN full-length enric... 48 0.66 1
(AP003977) Oryza sativa Japonica Group genomic DNA, chromoso... 40 1.9 3
(BC100191) Xenopus laevis cDNA clone MGC:114804 IMAGE:467986... 46 2.6 1
(BC078072) Xenopus laevis cDNA clone IMAGE:5514563, partial ... 46 2.6 1
(FI249612) CccaBb031-I23JF CccABb Cajanus cajan genomic clon... 46 2.6 1
(FI194717) CccaBa016-G17TR CccABa Cajanus cajan genomic clon... 46 2.6 1
(EK140049) 1095454082230 Global-Ocean-Sampling_GS-31-01-01-1... 46 2.6 1
(EB646442) AGENCOURT_75548819 NICHD_XGC_thy Xenopus laevis c... 46 2.6 1
(DY566031) AGENCOURT_69614889 NICHD_XGC_Emb10 Xenopus laevis... 46 2.6 1
(BP701122) Xenopus laevis NBRP cDNA clone:XL500i06ex, 5' end. 46 2.6 1
(BJ038441) Xenopus laevis cDNA clone:XL043h09, 5' end, singl... 46 2.6 1
(BJ033025) Xenopus laevis cDNA clone:XL019i11, 5' end, singl... 46 2.6 1
(BG552805) dab80a11.y1 NICHD_XGC_Emb4 Xenopus laevis cDNA cl... 46 2.6 1
(CT087646) Sus scrofa genomic clone PigE-137A23, genomic sur... 34 4.1 3
(AL391558) Human DNA sequence *** SEQUENCING CANCELLED *** f... 34 4.9 2
(AL512594) Human DNA sequence from clone RP11-549A6 on chrom... 34 5.0 2
(AC024287) Homo sapiens clone RP11-22O5, WORKING DRAFT SEQUE... 34 5.0 2
(AF499596) Phthorimaea operculella granulovirus, complete ge... 32 5.1 2
(AC005964) Arabidopsis thaliana chromosome V map 60.5 cM, co... 32 5.2 2
(AP005006) Oryza sativa Japonica Group genomic DNA, chromoso... 44 5.5 2
(AC102898) Mus musculus chromosome 7, clone RP24-321O23, com... 42 5.6 2
(AC080013) Homo sapiens 3 BAC RP11-379F4 (Roswell Park Cance... 40 5.8 3
(CT695369) Danio rerio EST, clone ZF_mu_284b08 3'. 36 6.7 2
(CU104698) Zebrafish DNA sequence from clone CH211-266L9 in ... 40 6.8 5
(AC173231) Bos taurus clone CH240-525L9, WORKING DRAFT SEQUE... 42 6.9 3
(FH697736) CHO_OF5031xp03r1.ab1 CHO_OF5 Nicotiana tabacum ge... 42 7.3 2
(FH002640) CHO_OF278xi24r1.ab1 CHO_OF Nicotiana tabacum geno... 38 8.1 2
(CU856206) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 8.2 5
(FH058464) CHO_OF3331xf11f1.ab1 CHO_OF3 Nicotiana tabacum ge... 42 8.5 2
>(C84008) Dictyostelium discoideum slug cDNA, clone SSC228.
Length = 516
Score = 803 bits (405), Expect = 0.0
Identities = 405/405 (100%)
Strand = Plus / Plus
Query: 270 tgatggtatttgtaatgtttgtgatggatttatacaatttgttcacccaagagatacaca 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tgatggtatttgtaatgtttgtgatggatttatacaatttgttcacccaagagatacaca 64
Query: 330 tcatttattatcatttcaagcacttcaatcaagagccaggaagagaaatattacaatatt 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 tcatttattatcatttcaagcacttcaatcaagagccaggaagagaaatattacaatatt 124
Query: 390 atggtattaaatgtgatgtgtctacagtggttttaattgatgaatctattgatagagttt 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 atggtattaaatgtgatgtgtctacagtggttttaattgatgaatctattgatagagttt 184
Query: 450 atgtaaaatcatcagcaatcttaacagtttgttatcatttaaatgcaccattttcttatt 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 atgtaaaatcatcagcaatcttaacagtttgttatcatttaaatgcaccattttcttatt 244
Query: 510 tatattcattcacctatgtaccaacatttgttagagatatttgttatgatgtttttggga 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tatattcattcacctatgtaccaacatttgttagagatatttgttatgatgtttttggga 304
Query: 570 aatatagatatttaattatgggaaagaaagatacttgtatgtttagtatcactttaagag 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aatatagatatttaattatgggaaagaaagatacttgtatgtttagtatcactttaagag 364
Query: 630 ataaattcattgactttaaaagtccattaatattggatgaagaac 674
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ataaattcattgactttaaaagtccattaatattggatgaagaac 409
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 846,734,367
Number of extensions: 55029512
Number of successful extensions: 4424109
Number of sequences better than 10.0: 45
Length of query: 1011
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 987
Effective length of database: 99,340,224,878
Effective search space: 98048801954586
Effective search space used: 98048801954586
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7.17 |
| Homology vs Protein |
Query= Contig-U01537-1 (Contig-U01537-1Q) /CSM_Contig/Contig-U01537-1Q.Seq.d
(1011 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AP003215_4(AP003215|pid:none) Oryza sativa Japonica Group genomi... 62 6e-15
(P40761) RecName: Full=Uncharacterized protein yuxK; AltName: Fu... 54 8e-15
EU956944_1(EU956944|pid:none) Zea mays clone 1578265 thiol-disul... 58 2e-13
CP001101_421(CP001101|pid:none) Chlorobium phaeobacteroides BS1,... 57 9e-13
CP001097_697(CP001097|pid:none) Chlorobium limicola DSM 245, com... 56 3e-12
EF585907_1(EF585907|pid:none) Sonneratia caseolaris isolate Sonn... 48 7e-12
CP001327_115(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 52 9e-12
AP006627_1194(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, c... 52 1e-11
CP000560_2743(CP000560|pid:none) Bacillus amyloliquefaciens FZB4... 47 2e-11
AM398681_752(AM398681|pid:none) Flavobacterium psychrophilum JIP... 53 2e-11
CP000685_2898(CP000685|pid:none) Flavobacterium johnsoniae UW101... 46 2e-10
CP000348_893(CP000348|pid:none) Leptospira borgpetersenii serova... 51 4e-10
CP000383_2432(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 49 6e-10
CP000927_109(CP000927|pid:none) Caulobacter sp. K31, complete ge... 49 2e-09
CP000228_43(CP000228|pid:none) Bacillus cereus Q1 plasmid pBc239... 65 3e-09
AE010300_2941(AE010300|pid:none) Leptospira interrogans serovar ... 48 3e-09
BT055638_1(BT055638|pid:none) Zea mays full-length cDNA clone ZM... 50 6e-09
EU961491_1(EU961491|pid:none) Zea mays clone 235887 nucleic acid... 50 6e-09
CP000720_2378(CP000720|pid:none) Yersinia pseudotuberculosis IP ... 46 8e-09
CP000950_2474(CP000950|pid:none) Yersinia pseudotuberculosis YPI... 46 8e-09
AC002423_25(AC002423|pid:none) Genomic sequence for Arabidopsis ... 47 2e-08
AP004995_4(AP004995|pid:none) Oryza sativa Japonica Group genomi... 48 2e-08
AE009952_2560(AE009952|pid:none) Yersinia pestis KIM, complete g... 44 2e-08
AG0190(AG0190) probable membrane protein YPO1564 [imported] - Ye... 44 3e-08
CP001110_1708(CP001110|pid:none) Pelodictyon phaeoclathratiforme... 62 3e-08
CP000076_2216(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 46 4e-08
CP001324_39(CP001324|pid:none) Micromonas sp. RCC299 chromosome ... 55 7e-08
CP001048_1656(CP001048|pid:none) Yersinia pseudotuberculosis PB1... 43 7e-08
AE016853_4332(AE016853|pid:none) Pseudomonas syringae pv. tomato... 45 2e-07
CP000083_2354(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 45 2e-07
(Q9SSR1) RecName: Full=DCC family protein At1g52590, chloroplast... 58 5e-07
AY088239_1(AY088239|pid:none) Arabidopsis thaliana clone 463 mRN... 58 5e-07
CP000592_191(CP000592|pid:none) Ostreococcus lucimarinus CCE9901... 40 5e-07
CP000777_928(CP000777|pid:none) Leptospira biflexa serovar Patoc... 40 7e-07
CP000264_3455(CP000264|pid:none) Jannaschia sp. CCS1, complete g... 43 2e-06
BX842652_28(BX842652|pid:none) Bdellovibrio bacteriovorus comple... 42 3e-06
EF144892_1(EF144892|pid:none) Populus trichocarpa clone WS01119_... 43 4e-06
CU207366_1607(CU207366|pid:none) Gramella forsetii KT0803 comple... 55 5e-06
CP000934_135(CP000934|pid:none) Cellvibrio japonicus Ueda107, co... 54 7e-06
AP006841_3503(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,... 54 1e-05
CR954212_174(CR954212|pid:none) Ostreococcus tauri strain OTTH05... 53 1e-05
CP000557_1325(CP000557|pid:none) Geobacillus thermodenitrificans... 44 2e-05
CP000472_4503(CP000472|pid:none) Shewanella piezotolerans WP3, c... 53 2e-05
CR626927_3232(CR626927|pid:none) Bacteroides fragilis NCTC 9343,... 53 2e-05
CP000828_796(CP000828|pid:none) Acaryochloris marina MBIC11017, ... 42 3e-05
CU234118_256(CU234118|pid:none) Bradyrhizobium sp. ORS278,comple... 36 6e-05
CP001298_2620(CP001298|pid:none) Methylobacterium chloromethanic... 42 8e-05
EU579454_3(EU579454|pid:none) Brassica oleracea clone BAC B16J1,... 40 9e-05
CP000908_2493(CP000908|pid:none) Methylobacterium extorquens PA1... 42 1e-04
AE017333_3173(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 50 2e-04
CP001510_2301(CP001510|pid:none) Methylobacterium extorquens AM1... 42 2e-04
BX908798_691(BX908798|pid:none) Parachlamydia-related symbiont U... 35 4e-04
CP000813_2773(CP000813|pid:none) Bacillus pumilus SAFR-032, comp... 49 4e-04
AP008955_2139(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 48 5e-04
CP000058_860(CP000058|pid:none) Pseudomonas syringae pv. phaseol... 39 5e-04
CR954246_1272(CR954246|pid:none) Pseudoalteromonas haloplanktis ... 41 0.076
CP000568_3073(CP000568|pid:none) Clostridium thermocellum ATCC 2... 39 0.22
AE008923_3166(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 39 0.29
CP000728_2669(CP000728|pid:none) Clostridium botulinum F str. La... 39 0.37
CP001581_2950(CP001581|pid:none) Clostridium botulinum A2 str. K... 39 0.37
CP000939_2740(CP000939|pid:none) Clostridium botulinum B1 str. O... 39 0.37
CP001083_2875(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 39 0.37
CP000606_2529(CP000606|pid:none) Shewanella loihica PV-4, comple... 39 0.38
AM039952_3339(AM039952|pid:none) Xanthomonas campestris pv. vesi... 38 0.49
AM442662_3(AM442662|pid:none) Vitis vinifera contig VV78X190193.... 35 3.2
AM920689_1126(AM920689|pid:none) Xanthomonas campestris pv. camp... 35 3.2
CP000680_2498(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 35 4.1
AF132673_1(AF132673|pid:none) Clostridium pasteurianum pyruvate:... 35 5.4
Y17727_2(Y17727|pid:none) Clostridium pasteurianum genes encodin... 35 5.4
CU694395_21(CU694395|pid:none) Ralstonia solanacearum strain Mol... 35 5.4
CP000941_1738(CP000941|pid:none) Xylella fastidiosa M12, complet... 35 5.4
CU914168_1720(CU914168|pid:none) Ralstonia solanacearum strain I... 35 5.4
CP000494_254(CP000494|pid:none) Bradyrhizobium sp. BTAi1, comple... 34 7.1
AE004091_1136(AE004091|pid:none) Pseudomonas aeruginosa PAO1, co... 29 7.6
AE001437_2199(AE001437|pid:none) Clostridium acetobutylicum ATCC... 34 9.2
>AP003215_4(AP003215|pid:none) Oryza sativa Japonica Group genomic
DNA, chromosome 1, BAC clone:OSJNBa0089K24.
&AP008207_424(AP008207|pid:none)
Length = 194
Score = 62.0 bits (149), Expect(2) = 6e-15
Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Frame = +2
Query: 362 EPGREILQYYG-IKCDVSTVVLIDESIDRVYVKSSAILTVCYHLNAPFSYLYSF-TYVPT 535
E GR++LQ G D+S+VVL+++ DR Y+KS A+L + +LN PF L +F +VP
Sbjct: 108 ESGRKLLQRSGRAPDDISSVVLVEK--DRSYIKSEAVLRIMGYLNLPFPQLATFLNFVPL 165
Query: 536 FVRDICYDVFGKYRYLIMGKKDT 604
F+RD YD RY + G+ ++
Sbjct: 166 FLRDFAYDNVADNRYAVFGRSES 188
Score = 42.7 bits (99), Expect(2) = 6e-15
Identities = 17/45 (37%), Positives = 29/45 (64%)
Frame = +1
Query: 241 TXSPRKIILFDGICNVCDGFIQFVHPRDTHHLLSFQALQSRARKR 375
T R I+LFDG+CN+C+G ++FV D + + + LQS + ++
Sbjct: 68 TSDTRPIMLFDGVCNLCNGGVRFVQEHDPNRSIRYIPLQSESGRK 112
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 911,714,313
Number of extensions: 16015810
Number of successful extensions: 30781
Number of sequences better than 10.0: 75
Number of HSP's gapped: 30743
Number of HSP's successfully gapped: 135
Length of query: 337
Length of database: 1,051,180,864
Length adjustment: 129
Effective length of query: 208
Effective length of database: 633,664,753
Effective search space: 131802268624
Effective search space used: 131802268624
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
2 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
4 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |