Contig-U09140-1
Contig ID Contig-U09140-1
Contig update 2002. 9.13
Contig sequence
>Contig-U09140-1 (Contig-U09140-1Q) /CSM_Contig/Contig-U09140-1Q.Seq.d
GAATTTCATTAAATGAAGAGGAAGAAGAGGATAAAGATCAAGAAGAAGAA
CAACAACAAAAACAACAACAAGAAGAGGAAGAAGAAATAGTGAATGAAAA
TAAAAATAAAACAATAATAATTTTAAAAGAATTAAATGAAAATAATATTA
TA----------ATAATATTAATAATAATTATGAAAATTTAAGAAAATAT
TTTACATCAAATAATAAGTTTGTTTTATTATCATTTGATATATTATTATC
ATTAACTAATTTACCAAGTCATTCAACAATTAATGATAATGATAATGAAA
TTATATTTACATTTATTAATGGTGATAGAAAATCAAATCTTGTAATTCAA
TTAGTTAATGAAAATTTAACAAAAATTAGTCATTGGGTAAAAATTAATTA
TTTACAATCAATTGTAAATTTAAAAACTTTTTTATCAATTCAACAATTAA
TTCAAATTTATAGAATAATAAATAATAAAAAAAATGAAAATGAAGA

Gap gap included
Contig length 486
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 1552655
End point 1553142
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U09140
List of clone(s)

est1=SLB781F,1,153
est2=SLB781Z,154,488
Translated Amino Acid sequence
ISLNEEEEEDKDQEEEQQQKQQQEEEEEIVNENKNKTIIILKELNENNII---

---NINNNYENLRKYFTSNNKFVLLSFDILLSLTNLPSHSTINDNDNEIIFTFINGDRKS
NLVIQLVNENLTKISHWVKINYLQSIVNLKTFLSIQQLIQIYRIINNKKNENE


Translated Amino Acid sequence (All Frames)
Frame A:
efh*mkrkkrikikkknnnknnnkkrkkk**mkikikq**f*kn*mkiil---

---iiliiimki*enilhqiislfyyhliyyyh*liyqviqqlmimimklylhllmvien
qil*fn*lmki*qklvig*kliiynql*i*klfyqfnn*fkfie**iikkmkmk

Frame B:
nfik*rgrrg*rsrrrtttktttrrgrrnse*k*k*nnnnfkrik*k*yy---

---*y***l*kfkkifyik**vcfiii*yiiiin*ftksfnn******nyiyiy*w**ki
kscnsis**kfnkn*slgkn*lftinckfknffinstinsnl*nnk**kk*k*r

Frame C:
ISLNEEEEEDKDQEEEQQQKQQQEEEEEIVNENKNKTIIILKELNENNII---

---NINNNYENLRKYFTSNNKFVLLSFDILLSLTNLPSHSTINDNDNEIIFTFINGDRKS
NLVIQLVNENLTKISHWVKINYLQSIVNLKTFLSIQQLIQIYRIINNKKNENE

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U09140-1 (Contig-U09140-1Q)
/CSM_Contig/Contig-U09140-1Q.Seq.d
(496 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U09140-1 (Contig-U09140-1Q) /CSM_Contig/Conti... 563 e-161
Contig-U13949-1 (Contig-U13949-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U09821-1 (Contig-U09821-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U09620-1 (Contig-U09620-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U06528-1 (Contig-U06528-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U11785-1 (Contig-U11785-1Q) /CSM_Contig/Conti... 38 0.009
Contig-U11382-1 (Contig-U11382-1Q) /CSM_Contig/Conti... 38 0.009
Contig-U06696-1 (Contig-U06696-1Q) /CSM_Contig/Conti... 38 0.009
Contig-U13880-1 (Contig-U13880-1Q) /CSM_Contig/Conti... 36 0.034
Contig-U13837-1 (Contig-U13837-1Q) /CSM_Contig/Conti... 36 0.034

>Contig-U09140-1 (Contig-U09140-1Q) /CSM_Contig/Contig-U09140-1Q.Seq.d
Length = 496

Score = 563 bits (284), Expect = e-161
Identities = 284/284 (100%)
Strand = Plus / Plus


Query: 193 gaaaatattttacatcaaataataagtttgttttattatcatttgatatattattatcat 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gaaaatattttacatcaaataataagtttgttttattatcatttgatatattattatcat 252


Query: 253 taactaatttaccaagtcattcaacaattaatgataatgataatgaaattatatttacat 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 taactaatttaccaagtcattcaacaattaatgataatgataatgaaattatatttacat 312


Query: 313 ttattaatggtgatagaaaatcaaatcttgtaattcaattagttaatgaaaatttaacaa 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttattaatggtgatagaaaatcaaatcttgtaattcaattagttaatgaaaatttaacaa 372


Query: 373 aaattagtcattgggtaaaaattaattatttacaatcaattgtaaatttaaaaacttttt 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aaattagtcattgggtaaaaattaattatttacaatcaattgtaaatttaaaaacttttt 432


Query: 433 tatcaattcaacaattaattcaaatttatagaataataaataat 476
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tatcaattcaacaattaattcaaatttatagaataataaataat 476


Score = 63.9 bits (32), Expect = 2e-10
Identities = 32/32 (100%)
Strand = Plus / Plus


Query: 1 gaatttcattaaatgaagaggaagaagaggat 32
||||||||||||||||||||||||||||||||
Sbjct: 1 gaatttcattaaatgaagaggaagaagaggat 32


Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 15 gaagaggaagaaga 28
||||||||||||||
Sbjct: 72 gaagaggaagaaga 85


>Contig-U13949-1 (Contig-U13949-1Q) /CSM_Contig/Contig-U13949-1Q.Seq.d
Length = 1211

Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 281 taatgataatgataatgaaa 300
||||||||||||||||||||
Sbjct: 1102 taatgataatgataatgaaa 1121


Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 411 attgtaaatttaaa 424
||||||||||||||
Sbjct: 1208 attgtaaatttaaa 1195


>Contig-U09821-1 (Contig-U09821-1Q) /CSM_Contig/Contig-U09821-1Q.Seq.d
Length = 1067

Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 283 atgataatgataatgaaatt 302
||||||||||||||||||||
Sbjct: 78 atgataatgataatgaaatt 97


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,808
Number of Sequences: 6905
Number of extensions: 14808
Number of successful extensions: 2333
Number of sequences better than 10.0: 722
length of query: 496
length of database: 5,674,871
effective HSP length: 16
effective length of query: 480
effective length of database: 5,564,391
effective search space: 2670907680
effective search space used: 2670907680
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11.14
Homology vs DNA
Query= Contig-U09140-1 (Contig-U09140-1Q) /CSM_Contig/Contig-U09140-1Q.Seq.d
(496 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU034133) Dictyostelium discoideum slug cDNA, clone SLB781. 392 e-105 1
(AL035476) Plasmodium falciparum MAL4P3. 44 1e-04 8
(CR382399) Plasmodium falciparum chromosome 6, complete sequ... 38 7e-04 7
(AE014846) Plasmodium falciparum 3D7 chromosome 12, section ... 40 0.001 6
(AC117080) Dictyostelium discoideum chromosome 2 map complem... 36 0.003 7
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s... 44 0.003 9
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1... 38 0.005 7
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ... 36 0.010 6
(AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1... 36 0.011 6
(AL844509) Plasmodium falciparum chromosome 13. 36 0.011 8
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ... 34 0.014 7
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4... 36 0.015 7
(CD324146) StrPu537.002508 Sea urchin embryo 20hr blastula s... 52 0.019 1
(AE014843) Plasmodium falciparum 3D7 chromosome 11 section 8... 40 0.021 9
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 38 0.021 8
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1... 36 0.022 9
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 34 0.024 6
(AX392736) Sequence 26 from Patent WO0212526. 40 0.028 3
(AR707083) Sequence 26 from patent US 6933145. 40 0.028 3
(AM454216) Vitis vinifera contig VV78X053949.6, whole genome... 42 0.036 2
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8... 34 0.045 8
(AL844507) Plasmodium falciparum chromosome 8. 36 0.045 10
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6... 36 0.045 7
(AC181198) Strongylocentrotus purpuratus clone R3-12B5, WORK... 40 0.047 2
(AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 36 0.048 10
(AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s... 40 0.049 8
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2... 38 0.050 7
(CT030700) Zebrafish DNA sequence from clone CH211-179N4 in ... 34 0.052 4
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 34 0.052 12
(Z98551) Plasmodium falciparum MAL3P6. 34 0.057 7
(AL844506) Plasmodium falciparum chromosome 7. 38 0.060 8
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 40 0.064 10
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7... 50 0.075 1
(AC184261) Strongylocentrotus purpuratus clone R3-54A19, WOR... 50 0.075 1
(AC180378) Strongylocentrotus purpuratus clone R3-3113D22, W... 50 0.075 1
(AC179458) Strongylocentrotus purpuratus clone R3-1037A04, W... 50 0.075 1
(AC179402) Strongylocentrotus purpuratus clone R3-60N17, WOR... 50 0.075 1
(AC179395) Strongylocentrotus purpuratus clone R3-60J2, WORK... 50 0.075 1
(AC178571) Strongylocentrotus purpuratus clone R3-3027A24, W... 50 0.075 1
(AC177064) Strongylocentrotus purpuratus clone R3-4004H24, W... 50 0.075 1
(AC167406) Bos taurus clone CH240-211C13, WORKING DRAFT SEQU... 50 0.075 1
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 38 0.076 9
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 40 0.077 8
(AC005504) Plasmodium falciparum chromosome 12, *** SEQUENCI... 34 0.096 6
(AE014838) Plasmodium falciparum 3D7 chromosome 11 section 3... 34 0.099 6
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3... 34 0.11 9
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2... 38 0.12 9
(ED026176) SBA023_B09.f Sugar beet BAC library USH20 (Code S... 36 0.13 2
(AC212922) Populus trichocarpa clone POP006-E02, complete se... 40 0.13 3
(EX819469) CBNA6587.fwd CBNA Phycomyces blakesleeanus NRRL15... 34 0.13 3
(AC179093) Strongylocentrotus purpuratus clone R3-4011B12, W... 40 0.13 5
(AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1... 40 0.13 7
(AC179637) Strongylocentrotus purpuratus clone R3-1025D5, WO... 40 0.13 4
(AL008970) Plasmodium falciparum MAL3P4. 36 0.13 6
(AC012496) Homo sapiens BAC clone RP11-341N18 from 2, comple... 42 0.14 3
(AC004153) Plasmodium falciparum chromosome 12 clone 3D7, **... 36 0.15 6
(BX890591) Zebrafish DNA sequence from clone DKEY-184J23 in ... 44 0.16 5
(BZ442322) BONKF08TF BO_1.6_2_KB_tot Brassica oleracea genom... 38 0.16 2
(FK866630) 000009973A21 D. serrata mRNA from different devel... 36 0.17 2
(DH426686) Oryzias latipes Fosmid clone:GOLWFno844_c17, reve... 36 0.17 2
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s... 40 0.18 7
(BX927345) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 40 0.19 4
(AC116922) Dictyostelium discoideum chromosome 2 map 6061442... 32 0.19 4
(CR925738) Zebrafish DNA sequence from clone DKEY-164G12 in ... 40 0.20 4
(AM642541) Entamoeba dispar GSS, clone dispar95e05.p1k. 36 0.22 2
(AC178866) Strongylocentrotus purpuratus clone R3-28K22, WOR... 36 0.23 4
(CU467890) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 36 0.24 6
(BI516731) BB160023A20B06.5 Bee Brain Normalized Library, BB... 36 0.25 2
(AM055178) Polyplastron multivesiculatum EST, clone Pm04_G11. 36 0.25 2
(AC180675) Strongylocentrotus purpuratus clone R3-3087J01, W... 42 0.27 4
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 36 0.27 12
(CU302367) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.30 1
(AC211407) Zea mays chromosome 9 clone CH201-335H7; ZMMBBc03... 48 0.30 1
(AC197108) Zea mays chromosome 9 clone ZMMBBb-555D21; ZMMBBb... 48 0.30 1
(AC181802) Strongylocentrotus purpuratus clone R3-1027J21, W... 48 0.30 1
(AC177678) Strongylocentrotus purpuratus clone R3-1017F06, W... 48 0.30 1
(FH736120) CHO_OF5131xb09r1.ab1 CHO_OF5 Nicotiana tabacum ge... 48 0.30 1
(ER325903) 1092344211589 Global-Ocean-Sampling_GS-34-01-01-1... 48 0.30 1
(EK294002) 1095462340720 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.30 1
(BZ820675) PUGAZ57TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 48 0.30 1
(BZ820669) PUGAZ57TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 48 0.30 1
(EC299817) OVARYF089651A22 POSSUM_01-POSSUM-C-OVARY-2KB Tric... 48 0.30 1
(BM166102) EST568625 PyBS Plasmodium yoelii yoelii cDNA clon... 48 0.30 1
(AU076358) Dictyostelium discoideum slug cDNA, clone SSA642. 36 0.30 2
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9... 36 0.30 6
(EB799637) 5205719 ZF02 Danio rerio cDNA clone 2228783, mRNA... 36 0.31 2
(AM427847) Vitis vinifera contig VV78X253702.3, whole genome... 42 0.31 2
(AM466204) Vitis vinifera contig VV78X042763.11, whole genom... 42 0.31 3
(CU694755) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 0.31 2
(BI511436) BB160005B20H02.5 Bee Brain Normalized Library, BB... 36 0.33 2
(DB778961) Apis mellifera head cDNA, RIKEN full-length enric... 36 0.33 2
(DB781064) Apis mellifera head cDNA, RIKEN full-length enric... 36 0.33 2
(DB779752) Apis mellifera head cDNA, RIKEN full-length enric... 36 0.34 2
(CU928226) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 0.34 3
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 34 0.34 8
(AC181660) Strongylocentrotus purpuratus clone R3-3041A11, W... 40 0.36 5
(AC176606) Strongylocentrotus purpuratus clone R3-3079F5, WO... 38 0.36 6
(CR936458) Zebrafish DNA sequence from clone CH211-282H1 in ... 40 0.37 3
(AC115683) Dictyostelium discoideum chromosome 2 map complem... 32 0.38 4
(AM454163) Vitis vinifera contig VV78X270194.5, whole genome... 36 0.38 3

>(AU034133) Dictyostelium discoideum slug cDNA, clone SLB781.
Length = 335

Score = 392 bits (198), Expect = e-105
Identities = 198/198 (100%)
Strand = Plus / Plus


Query: 163 ataatattaataataattatgaaaatttaagaaaatattttacatcaaataataagtttg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ataatattaataataattatgaaaatttaagaaaatattttacatcaaataataagtttg 60


Query: 223 ttttattatcatttgatatattattatcattaactaatttaccaagtcattcaacaatta 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttttattatcatttgatatattattatcattaactaatttaccaagtcattcaacaatta 120


Query: 283 atgataatgataatgaaattatatttacatttattaatggtgatagaaaatcaaatcttg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgataatgataatgaaattatatttacatttattaatggtgatagaaaatcaaatcttg 180


Query: 343 taattcaattagttaatg 360
||||||||||||||||||
Sbjct: 181 taattcaattagttaatg 198

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 383,220,139
Number of extensions: 29940482
Number of successful extensions: 3196880
Number of sequences better than 10.0: 639
Length of query: 496
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 473
Effective length of database: 93,106,754,628
Effective search space: 44039494939044
Effective search space used: 44039494939044
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 6.25
Homology vs Protein
Query= Contig-U09140-1 (Contig-U09140-1Q) /CSM_Contig/Contig-U09140-1Q.Seq.d
(496 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AJ243902_1(AJ243902|pid:none) Mycoplasma hominis p75 gene, strai... 39 0.051
AL844506_96(AL844506|pid:none) Plasmodium falciparum 3D7 chromos... 38 0.15
AF030693_1(AF030693|pid:none) Plasmodium falciparum strain HB3 C... 38 0.15
CP000111_346(CP000111|pid:none) Prochlorococcus marinus str. MIT... 37 0.25
AF224516_4(AF224516|pid:none) Eulemur mongoz isolate JP178 cytoc... 37 0.33
AF224515_4(AF224515|pid:none) Eulemur mongoz isolate JP177 cytoc... 37 0.33
AM905040_10(AM905040|pid:none) Eulemur mongoz complete mitochond... 37 0.33
AF224528_4(AF224528|pid:none) Eulemur macaco macaco isolate JP80... 36 0.43
AJ243901_1(AJ243901|pid:none) Mycoplasma hominis p75 gene, strai... 36 0.43
AF224522_4(AF224522|pid:none) Eulemur coronatus isolate JP33 cyt... 36 0.56
AF224523_4(AF224523|pid:none) Eulemur coronatus isolate JP34 cyt... 36 0.56
AF224552_4(AF224552|pid:none) Eulemur fulvus rufus isolate JP333... 35 1.3
AF224548_4(AF224548|pid:none) Eulemur fulvus rufus isolate JP176... 35 1.3
AF224550_4(AF224550|pid:none) Eulemur fulvus rufus isolate JP206... 35 1.3
AF224547_4(AF224547|pid:none) Eulemur fulvus rufus isolate JP171... 35 1.3
AF224549_4(AF224549|pid:none) Eulemur fulvus rufus isolate JP181... 35 1.3
AF224545_4(AF224545|pid:none) Eulemur fulvus rufus isolate JP161... 35 1.3
AF224565_4(AF224565|pid:none) Eulemur fulvus albifrons isolate J... 34 1.6
AF224561_4(AF224561|pid:none) Eulemur fulvus sanfordi isolate JP... 34 1.6
AF224519_4(AF224519|pid:none) Eulemur mongoz isolate JP220 cytoc... 34 1.6
AF224531_4(AF224531|pid:none) Eulemur macaco flavifrons isolate ... 34 1.6
AY746982_1(AY746982|pid:none) Callithrix jacchus cytochrome P450... 33 2.8
AL844506_59(AL844506|pid:none) Plasmodium falciparum 3D7 chromos... 33 2.8
(Q55CN0) RecName: Full=Tubulin-specific chaperone E; AltName: Fu... 33 3.6
CP000849_1399(CP000849|pid:none) Rickettsia bellii OSU 85-389, c... 33 3.6
AF224559_4(AF224559|pid:none) Eulemur fulvus collaris isolate JP... 33 4.8
CP001047_455(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ... 33 4.8
AE014188_212(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 33 4.8
AF224562_4(AF224562|pid:none) Eulemur fulvus albocollaris isolat... 32 6.2
AF224534_4(AF224534|pid:none) Eulemur fulvus fulvus isolate JP41... 32 6.2
AF224544_4(AF224544|pid:none) Eulemur fulvus rufus isolate JP123... 32 6.2
AE014186_335(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 32 6.2
FN357441_19(FN357441|pid:none) Schistosoma mansoni genome sequen... 32 6.2
FN357641_1(FN357641|pid:none) Schistosoma mansoni genome sequenc... 32 6.2
AY582561_4(AY582561|pid:none) Eulemur fulvus rufus isolate RANO4... 32 6.2
CP000439_501(CP000439|pid:none) Francisella tularensis subsp. no... 32 8.1
(Q54ML4) RecName: Full=HEAT repeat-containing protein 1 homolog; 32 8.1
AF164347_1(AF164347|pid:none) Dictyostelium discoideum developme... 32 8.1

>AJ243902_1(AJ243902|pid:none) Mycoplasma hominis p75 gene, strain
7488.
Length = 654

Score = 39.3 bits (90), Expect = 0.051
Identities = 27/83 (32%), Positives = 41/83 (49%)
Frame = +3

Query: 246 LSLTNLPSHSTINDNDNEIIFTFINGDRKSNLVIQLVNENLTKISHWVKINYLQSIVNLK 425
L + L +H ++ N IF I + NL+ + + NLTKIS+ K NY++ + N
Sbjct: 293 LDVKFLAAHDELSQALNTSIFENIETTNERNLLNKYIKTNLTKISNVEKQNYIEEVKN-- 350

Query: 426 TFLSIQQLIQIYRIINNKKNENE 494
+I L+ Y NN N NE
Sbjct: 351 ---TINSLLNKY---NNNINNNE 367

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 313,428,423
Number of extensions: 4367613
Number of successful extensions: 13114
Number of sequences better than 10.0: 38
Number of HSP's gapped: 13094
Number of HSP's successfully gapped: 38
Length of query: 165
Length of database: 1,040,966,779
Length adjustment: 119
Effective length of query: 46
Effective length of database: 659,656,864
Effective search space: 30344215744
Effective search space used: 30344215744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

PSORT

psg: 0.75 gvh: 0.04 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
32.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for Contig-U09140-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0