Contig-U09140-1 |
Contig ID |
Contig-U09140-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
gap included |
Contig length |
486 |
Chromosome number (1..6, M) |
1 |
Chromosome length |
4919822 |
Start point |
1552655 |
End point |
1553142 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
1 |
Number of EST |
2 |
Link to clone list |
U09140 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.14 |
Homology vs DNA |
Query= Contig-U09140-1 (Contig-U09140-1Q) /CSM_Contig/Contig-U09140-1Q.Seq.d (496 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU034133) Dictyostelium discoideum slug cDNA, clone SLB781. 392 e-105 1 (AL035476) Plasmodium falciparum MAL4P3. 44 1e-04 8 (CR382399) Plasmodium falciparum chromosome 6, complete sequ... 38 7e-04 7 (AE014846) Plasmodium falciparum 3D7 chromosome 12, section ... 40 0.001 6 (AC117080) Dictyostelium discoideum chromosome 2 map complem... 36 0.003 7 (AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s... 44 0.003 9 (AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1... 38 0.005 7 (AE014845) Plasmodium falciparum 3D7 chromosome 12, section ... 36 0.010 6 (AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1... 36 0.011 6 (AL844509) Plasmodium falciparum chromosome 13. 36 0.011 8 (AE014849) Plasmodium falciparum 3D7 chromosome 12, section ... 34 0.014 7 (AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4... 36 0.015 7 (CD324146) StrPu537.002508 Sea urchin embryo 20hr blastula s... 52 0.019 1 (AE014843) Plasmodium falciparum 3D7 chromosome 11 section 8... 40 0.021 9 (AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 38 0.021 8 (AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1... 36 0.022 9 (AF250284) Amsacta moorei entomopoxvirus, complete genome. 34 0.024 6 (AX392736) Sequence 26 from Patent WO0212526. 40 0.028 3 (AR707083) Sequence 26 from patent US 6933145. 40 0.028 3 (AM454216) Vitis vinifera contig VV78X053949.6, whole genome... 42 0.036 2 (AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8... 34 0.045 8 (AL844507) Plasmodium falciparum chromosome 8. 36 0.045 10 (AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6... 36 0.045 7 (AC181198) Strongylocentrotus purpuratus clone R3-12B5, WORK... 40 0.047 2 (AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 36 0.048 10 (AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s... 40 0.049 8 (AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2... 38 0.050 7 (CT030700) Zebrafish DNA sequence from clone CH211-179N4 in ... 34 0.052 4 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 34 0.052 12 (Z98551) Plasmodium falciparum MAL3P6. 34 0.057 7 (AL844506) Plasmodium falciparum chromosome 7. 38 0.060 8 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 40 0.064 10 (AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7... 50 0.075 1 (AC184261) Strongylocentrotus purpuratus clone R3-54A19, WOR... 50 0.075 1 (AC180378) Strongylocentrotus purpuratus clone R3-3113D22, W... 50 0.075 1 (AC179458) Strongylocentrotus purpuratus clone R3-1037A04, W... 50 0.075 1 (AC179402) Strongylocentrotus purpuratus clone R3-60N17, WOR... 50 0.075 1 (AC179395) Strongylocentrotus purpuratus clone R3-60J2, WORK... 50 0.075 1 (AC178571) Strongylocentrotus purpuratus clone R3-3027A24, W... 50 0.075 1 (AC177064) Strongylocentrotus purpuratus clone R3-4004H24, W... 50 0.075 1 (AC167406) Bos taurus clone CH240-211C13, WORKING DRAFT SEQU... 50 0.075 1 (AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 38 0.076 9 (CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 40 0.077 8 (AC005504) Plasmodium falciparum chromosome 12, *** SEQUENCI... 34 0.096 6 (AE014838) Plasmodium falciparum 3D7 chromosome 11 section 3... 34 0.099 6 (AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3... 34 0.11 9 (AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2... 38 0.12 9 (ED026176) SBA023_B09.f Sugar beet BAC library USH20 (Code S... 36 0.13 2 (AC212922) Populus trichocarpa clone POP006-E02, complete se... 40 0.13 3 (EX819469) CBNA6587.fwd CBNA Phycomyces blakesleeanus NRRL15... 34 0.13 3 (AC179093) Strongylocentrotus purpuratus clone R3-4011B12, W... 40 0.13 5 (AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1... 40 0.13 7 (AC179637) Strongylocentrotus purpuratus clone R3-1025D5, WO... 40 0.13 4 (AL008970) Plasmodium falciparum MAL3P4. 36 0.13 6 (AC012496) Homo sapiens BAC clone RP11-341N18 from 2, comple... 42 0.14 3 (AC004153) Plasmodium falciparum chromosome 12 clone 3D7, **... 36 0.15 6 (BX890591) Zebrafish DNA sequence from clone DKEY-184J23 in ... 44 0.16 5 (BZ442322) BONKF08TF BO_1.6_2_KB_tot Brassica oleracea genom... 38 0.16 2 (FK866630) 000009973A21 D. serrata mRNA from different devel... 36 0.17 2 (DH426686) Oryzias latipes Fosmid clone:GOLWFno844_c17, reve... 36 0.17 2 (AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s... 40 0.18 7 (BX927345) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 40 0.19 4 (AC116922) Dictyostelium discoideum chromosome 2 map 6061442... 32 0.19 4 (CR925738) Zebrafish DNA sequence from clone DKEY-164G12 in ... 40 0.20 4 (AM642541) Entamoeba dispar GSS, clone dispar95e05.p1k. 36 0.22 2 (AC178866) Strongylocentrotus purpuratus clone R3-28K22, WOR... 36 0.23 4 (CU467890) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 36 0.24 6 (BI516731) BB160023A20B06.5 Bee Brain Normalized Library, BB... 36 0.25 2 (AM055178) Polyplastron multivesiculatum EST, clone Pm04_G11. 36 0.25 2 (AC180675) Strongylocentrotus purpuratus clone R3-3087J01, W... 42 0.27 4 (CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 36 0.27 12 (CU302367) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.30 1 (AC211407) Zea mays chromosome 9 clone CH201-335H7; ZMMBBc03... 48 0.30 1 (AC197108) Zea mays chromosome 9 clone ZMMBBb-555D21; ZMMBBb... 48 0.30 1 (AC181802) Strongylocentrotus purpuratus clone R3-1027J21, W... 48 0.30 1 (AC177678) Strongylocentrotus purpuratus clone R3-1017F06, W... 48 0.30 1 (FH736120) CHO_OF5131xb09r1.ab1 CHO_OF5 Nicotiana tabacum ge... 48 0.30 1 (ER325903) 1092344211589 Global-Ocean-Sampling_GS-34-01-01-1... 48 0.30 1 (EK294002) 1095462340720 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.30 1 (BZ820675) PUGAZ57TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 48 0.30 1 (BZ820669) PUGAZ57TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 48 0.30 1 (EC299817) OVARYF089651A22 POSSUM_01-POSSUM-C-OVARY-2KB Tric... 48 0.30 1 (BM166102) EST568625 PyBS Plasmodium yoelii yoelii cDNA clon... 48 0.30 1 (AU076358) Dictyostelium discoideum slug cDNA, clone SSA642. 36 0.30 2 (AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9... 36 0.30 6 (EB799637) 5205719 ZF02 Danio rerio cDNA clone 2228783, mRNA... 36 0.31 2 (AM427847) Vitis vinifera contig VV78X253702.3, whole genome... 42 0.31 2 (AM466204) Vitis vinifera contig VV78X042763.11, whole genom... 42 0.31 3 (CU694755) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 0.31 2 (BI511436) BB160005B20H02.5 Bee Brain Normalized Library, BB... 36 0.33 2 (DB778961) Apis mellifera head cDNA, RIKEN full-length enric... 36 0.33 2 (DB781064) Apis mellifera head cDNA, RIKEN full-length enric... 36 0.33 2 (DB779752) Apis mellifera head cDNA, RIKEN full-length enric... 36 0.34 2 (CU928226) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 0.34 3 (AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 34 0.34 8 (AC181660) Strongylocentrotus purpuratus clone R3-3041A11, W... 40 0.36 5 (AC176606) Strongylocentrotus purpuratus clone R3-3079F5, WO... 38 0.36 6 (CR936458) Zebrafish DNA sequence from clone CH211-282H1 in ... 40 0.37 3 (AC115683) Dictyostelium discoideum chromosome 2 map complem... 32 0.38 4 (AM454163) Vitis vinifera contig VV78X270194.5, whole genome... 36 0.38 3
>(AU034133) Dictyostelium discoideum slug cDNA, clone SLB781. Length = 335
Score = 392 bits (198), Expect = e-105 Identities = 198/198 (100%) Strand = Plus / Plus
Query: 163 ataatattaataataattatgaaaatttaagaaaatattttacatcaaataataagtttg 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ataatattaataataattatgaaaatttaagaaaatattttacatcaaataataagtttg 60
Query: 223 ttttattatcatttgatatattattatcattaactaatttaccaagtcattcaacaatta 282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ttttattatcatttgatatattattatcattaactaatttaccaagtcattcaacaatta 120
Query: 283 atgataatgataatgaaattatatttacatttattaatggtgatagaaaatcaaatcttg 342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 atgataatgataatgaaattatatttacatttattaatggtgatagaaaatcaaatcttg 180
Query: 343 taattcaattagttaatg 360 |||||||||||||||||| Sbjct: 181 taattcaattagttaatg 198
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 383,220,139 Number of extensions: 29940482 Number of successful extensions: 3196880 Number of sequences better than 10.0: 639 Length of query: 496 Length of database: 95,242,211,685 Length adjustment: 23 Effective length of query: 473 Effective length of database: 93,106,754,628 Effective search space: 44039494939044 Effective search space used: 44039494939044 X1: 11 (21.8 bits) S2: 21 (42.1 bits)
|
protein update |
2009. 6.25 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
1 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |