Contig-U09111-1 |
Contig ID |
Contig-U09111-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1449 |
Chromosome number (1..6, M) |
1 |
Chromosome length |
4919822 |
Start point |
376079 |
End point |
374625 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
3 |
Number of EST |
6 |
Link to clone list |
U09111 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.14 |
Homology vs DNA |
|
protein update |
2009. 6.25 |
Homology vs Protein |
Query= Contig-U09111-1 (Contig-U09111-1Q) /CSM_Contig/Contig-U09111-1Q.Seq.d (1459 letters)
Database: nrp_A 3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
BX649388_10(BX649388|pid:none) Zebrafish DNA sequence from clone... 67 1e-09 BT025427_1(BT025427|pid:none) Bos taurus GRAM domain containing ... 67 2e-09 (Q8VEF1) RecName: Full=GRAM domain-containing protein 1A; 67 2e-09 BC018554_1(BC018554|pid:none) Mus musculus GRAM domain containin... 67 2e-09 AY171575_1(AY171575|pid:none) Rattus norvegicus EG1RVC mRNA, com... 67 2e-09 BC105896_1(BC105896|pid:none) Rattus norvegicus GRAM domain cont... 67 2e-09 (Q96CP6) RecName: Full=GRAM domain-containing protein 1A; &BC01... 67 2e-09 AK097215_1(AK097215|pid:none) Homo sapiens cDNA FLJ39896 fis, cl... 67 2e-09 (Q8IYS0) RecName: Full=GRAM domain-containing protein 1C; &AK29... 66 3e-09 FM992688_684(FM992688|pid:none) Candida dubliniensis CD36 chromo... 64 1e-08 AB384137_1(AB384137|pid:none) Synthetic construct DNA, clone: pF... 61 9e-08 AE014134_611(AE014134|pid:none) Drosophila melanogaster chromoso... 61 9e-08 AE014134_613(AE014134|pid:none) Drosophila melanogaster chromoso... 61 9e-08 (Q3KR37) RecName: Full=GRAM domain-containing protein 1B; &BC10... 61 9e-08 AB033027_1(AB033027|pid:none) Homo sapiens mRNA for KIAA1201 pro... 61 9e-08 AE014134_612(AE014134|pid:none) Drosophila melanogaster chromoso... 61 9e-08 CP000500_77(CP000500|pid:none) Pichia stipitis CBS 6054 chromoso... 60 2e-07 CP000586_111(CP000586|pid:none) Ostreococcus lucimarinus CCE9901... 60 3e-07 AM458569_2(AM458569|pid:none) Vitis vinifera contig VV78X180401.... 58 1e-06 FN392321_1165(FN392321|pid:none) Pichia pastoris GS115 chromosom... 58 1e-06 AE016817_695(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 57 2e-06 CU928169_153(CU928169|pid:none) Kluyveromyces thermotolerans str... 55 6e-06 AM920437_1469(AM920437|pid:none) Penicillium chrysogenum Wiscons... 55 6e-06 CR382125_732(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 55 8e-06 AM472033_4(AM472033|pid:none) Vitis vinifera contig VV78X221423.... 55 8e-06 CU633897_175(CU633897|pid:none) Podospora anserina genomic DNA c... 54 1e-05 AM270384_8(AM270384|pid:none) Aspergillus niger contig An17c0020... 54 2e-05 AC146785_25(AC146785|pid:none) Medicago truncatula clone mth2-4h... 53 2e-05 BT075742_1(BT075742|pid:none) Osmerus mordax clone omor-rgc-519-... 52 4e-05 AY085322_1(AY085322|pid:none) Arabidopsis thaliana clone 14562 m... 52 4e-05 AC116921_9(AC116921|pid:none) Dictyostelium discoideum chromosom... 52 7e-05 AF091593_1(AF091593|pid:none) Danio rerio synaptosome-associated... 51 1e-04 AB169798_1(AB169798|pid:none) Macaca fascicularis brain cDNA, cl... 51 1e-04 (P36977) RecName: Full=Synaptosomal-associated protein 25-A; ... 51 1e-04 (Q9LMG8) RecName: Full=Putative SNAP25 homologous protein SNAP30... 51 1e-04 (Q5TZ66) RecName: Full=Synaptosomal-associated protein 25-A; ... 51 1e-04 BC059439_1(BC059439|pid:none) Danio rerio cDNA clone MGC:73063 I... 51 1e-04 (P38800) RecName: Full=Uncharacterized protein YHR080C; &S46817... 50 2e-04 AB049852_1(AB049852|pid:none) Macaca fascicularis brain cDNA, cl... 50 2e-04 AL023913_4(AL023913|pid:none) Human DNA sequence from clone RP5-... 50 2e-04 (Q5NVG5) RecName: Full=Synaptosomal-associated protein 25; ... 50 2e-04 CR382138_417(CR382138|pid:none) Debaryomyces hansenii strain CBS... 50 2e-04 BC135565_1(BC135565|pid:none) Xenopus tropicalis synaptosomal-as... 50 2e-04 BC063942_1(BC063942|pid:none) Danio rerio synaptosome-associated... 50 2e-04 CR860767_1(CR860767|pid:none) Pongo abelii mRNA; cDNA DKFZp459E0... 50 2e-04 AY891715_1(AY891715|pid:none) Synthetic construct Homo sapiens c... 50 3e-04 BT081825_1(BT081825|pid:none) Rana catesbeiana clone rcat-evr-52... 50 3e-04 (O00161) RecName: Full=Synaptosomal-associated protein 23; ... 50 3e-04 DQ418881_1(DQ418881|pid:none) Scophthalmus maximus 25 kDa synapt... 49 4e-04 BT058701_1(BT058701|pid:none) Salmo salar clone Contig3500 Synap... 49 4e-04 FM992693_80(FM992693|pid:none) Candida dubliniensis CD36 chromos... 49 4e-04 BC133525_1(BC133525|pid:none) Bos taurus syntaxin 6, mRNA (cDNA ... 49 5e-04 CP000499_74(CP000499|pid:none) Pichia stipitis CBS 6054 chromoso... 49 5e-04 AJ619993_1(AJ619993|pid:none) Lateolabrax japonicus mRNA for syn... 49 5e-04 CR380957_544(CR380957|pid:none) Candida glabrata strain CBS138 c... 49 5e-04 AK102778_1(AK102778|pid:none) Oryza sativa Japonica Group cDNA c... 49 5e-04 AF335586_1(AF335586|pid:none) Xenopus laevis SNAP25a mRNA, compl... 49 6e-04 AF335587_1(AF335587|pid:none) Xenopus laevis SNAP25b mRNA, compl... 49 6e-04 BC082475_1(BC082475|pid:none) Xenopus laevis cDNA clone MGC:8443... 49 6e-04 (P36978) RecName: Full=Synaptosomal-associated protein 25-B; ... 49 6e-04 CS379302_1(CS379302|pid:none) Sequence 19 from Patent WO20060338... 48 8e-04 (O70377) RecName: Full=Synaptosomal-associated protein 23; ... 48 0.001 AK017311_1(AK017311|pid:none) Mus musculus 6 days neonate head c... 48 0.001 AE014297_1054(AE014297|pid:none) Drosophila melanogaster chromos... 47 0.001 CR382127_489(CR382127|pid:none) Yarrowia lipolytica strain CLIB1... 47 0.001 BC157148_1(BC157148|pid:none) Xenopus tropicalis hypothetical pr... 47 0.002 AF007169_1(AF007169|pid:none) Mus musculus 23kDa synaptosomal as... 47 0.002 AK293884_1(AK293884|pid:none) Homo sapiens cDNA FLJ57959 complet... 47 0.002 (A6QP11) RecName: Full=Synaptosomal-associated protein 47; ... 46 0.003 EF513749_1(EF513749|pid:none) Lateolabrax japonicus SNAP-23 (SNA... 46 0.003 (Q9JKK1) RecName: Full=Syntaxin-6; &AF237814_1(AF237814|pid:non... 46 0.004 (Q63635) RecName: Full=Syntaxin-6; &BC081769_1(BC081769|pid:non... 45 0.005 AK141520_1(AK141520|pid:none) Mus musculus adult male hippocampu... 45 0.007 AK018167_1(AK018167|pid:none) Mus musculus adult male medulla ob... 45 0.007 U85806_1(U85806|pid:none) Hirudo medicinalis SNAP-25 homolog mRN... 45 0.007 (Q54IL5) RecName: Full=UDP-sugar-dependent glycosyltransferase 5... 45 0.009 FN318100_1(FN318100|pid:none) Schistosoma japonicum isolate Anhu... 45 0.009 AC116305_46(AC116305|pid:none) Dictyostelium discoideum chromoso... 45 0.009 AF098916_1(AF098916|pid:none) Dictyostelium discoideum sterol gl... 45 0.009 CU928179_384(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 45 0.009 FN357416_8(FN357416|pid:none) Schistosoma mansoni genome sequenc... 45 0.009 AK163167_1(AK163167|pid:none) Mus musculus 7 days neonate cerebe... 45 0.009 BT080276_1(BT080276|pid:none) Caligus clemensi clone ccle-evs-51... 45 0.009 AC093956_4(AC093956|pid:none) Oryza sativa (japonica cultivar-gr... 45 0.009 AM494954_67(AM494954|pid:none) Leishmania braziliensis chromosom... 44 0.011 FJ664269_1(FJ664269|pid:none) Annona cherimola syntaxin-71 (SYP7... 44 0.011 (Q9SF29) RecName: Full=Syntaxin-71; Short=AtSYP71; &AC... 44 0.015 AY894066_1(AY894066|pid:none) Synthetic construct Homo sapiens c... 44 0.015 AY890848_1(AY890848|pid:none) Synthetic construct Homo sapiens c... 44 0.015 CR541873_1(CR541873|pid:none) Homo sapiens full open reading fra... 44 0.015 (O43752) RecName: Full=Syntaxin-6; &(Q5R6Q2) RecName: Fu &AJ002... 44 0.015 FN317509_1(FN317509|pid:none) Schistosoma japonicum isolate Anhu... 44 0.015 DQ653131_1(DQ653131|pid:none) Arabidopsis thaliana clone 0000017... 44 0.019 AL132953_4(AL132953|pid:none) Arabidopsis thaliana DNA chromosom... 44 0.019 AJ390514_1(AJ390514|pid:none) Candida albicans ORF DNA, clone 48... 44 0.019 AC150891_8(AC150891|pid:none) Medicago truncatula chromosome 2 c... 43 0.025 CP001328_558(CP001328|pid:none) Micromonas sp. RCC299 chromosome... 43 0.025 (Q9Z2P6) RecName: Full=Synaptosomal-associated protein 29; ... 43 0.025 AB033718_1(AB033718|pid:none) Xenopus laevis XOSNAP-23 mRNA for ... 43 0.033 AF091600_1(AF091600|pid:none) Leucophaea maderae synaptosome-ass... 43 0.033 AL021479_4(AL021479|pid:none) Caenorhabditis elegans YAC Y22F5A,... 43 0.033 AK159392_1(AK159392|pid:none) Mus musculus osteoclast-like cell ... 43 0.033 (P36976) RecName: Full=Synaptosomal-associated protein 25; ... 43 0.033 CP000589_377(CP000589|pid:none) Ostreococcus lucimarinus CCE9901... 43 0.033 BC155713_1(BC155713|pid:none) Xenopus tropicalis hypothetical pr... 42 0.043 BT078368_1(BT078368|pid:none) Lepeophtheirus salmonis clone lsal... 42 0.043 DQ382281_1(DQ382281|pid:none) Aplysia californica SNAP-25 mRNA, ... 42 0.043 CR762282_1(CR762282|pid:none) Xenopus tropicalis finished cDNA, ... 42 0.043 CR760564_1(CR760564|pid:none) Xenopus tropicalis finished cDNA, ... 42 0.043 AY092757_1(AY092757|pid:none) Loligo pealei SNAP25 fusion protei... 42 0.056 AY043265_117(AY043265|pid:none) Epiphyas postvittana nucleopolyh... 42 0.056 AK075640_1(AK075640|pid:none) Mus musculus 18-day embryo whole b... 42 0.056 AB260023_1(AB260023|pid:none) Dugesia japonica DjSNAP-25 mRNA fo... 42 0.056 CU928171_800(CU928171|pid:none) Kluyveromyces thermotolerans str... 42 0.056 AL713994_4(AL713994|pid:none) Mouse DNA sequence from clone RP23... 42 0.056 AB261081_1(AB261081|pid:none) Entamoeba histolytica gene for EhS... 42 0.056 AK144165_1(AK144165|pid:none) Mus musculus brain CRL-1443 BC3H1 ... 42 0.056 AL713994_6(AL713994|pid:none) Mouse DNA sequence from clone RP23... 42 0.056 AL713994_7(AL713994|pid:none) Mouse DNA sequence from clone RP23... 42 0.056 (P43560) RecName: Full=Uncharacterized protein YFL042C; &D50617... 42 0.056 FM992693_18(FM992693|pid:none) Candida dubliniensis CD36 chromos... 42 0.056 BT068043_1(BT068043|pid:none) Zea mays full-length cDNA clone ZM... 42 0.073 (Q9ERB0) RecName: Full=Synaptosomal-associated protein 29; ... 42 0.073 AE017353_197(AE017353|pid:none) Cryptococcus neoformans var. neo... 42 0.073 CR954209_404(CR954209|pid:none) Ostreococcus tauri strain OTTH05... 42 0.073 U56262_1(U56262|pid:none) Rattus norvegicus SNAP-25b mRNA, parti... 41 0.095 AK005042_1(AK005042|pid:none) Mus musculus adult male liver cDNA... 41 0.095 AY891640_1(AY891640|pid:none) Synthetic construct Homo sapiens c... 41 0.095 AK020827_1(AK020827|pid:none) Mus musculus adult retina cDNA, RI... 41 0.12 (Q6P6S0) RecName: Full=Synaptosomal-associated protein 47; ... 40 0.16 AE013599_1265(AE013599|pid:none) Drosophila melanogaster chromos... 40 0.16 BC153748_1(BC153748|pid:none) Xenopus tropicalis TBC1 domain fam... 40 0.16 AE013599_1264(AE013599|pid:none) Drosophila melanogaster chromos... 40 0.16 AE013599_1266(AE013599|pid:none) Drosophila melanogaster chromos... 40 0.16 DQ000552_1(DQ000552|pid:none) Synthetic construct clone PSF:1090... 40 0.21 CR380958_565(CR380958|pid:none) Candida glabrata strain CBS138 c... 40 0.21 AB449889_1(AB449889|pid:none) Homo sapiens TBC1D8A mRNA for TBC1... 40 0.21 AM910994_537(AM910994|pid:none) Plasmodium knowlesi strain H chr... 40 0.21 (O95721) RecName: Full=Synaptosomal-associated protein 29; ... 40 0.28 AJ719634_1(AJ719634|pid:none) Gallus gallus mRNA for hypothetica... 40 0.28 S38308(S38308)SNAP-25 protein - chicken 39 0.36 AF203734_1(AF203734|pid:none) Dictyostelium discoideum culminati... 39 0.36 BC017237_1(BC017237|pid:none) Homo sapiens syntaxin 10, mRNA (cD... 39 0.36 BT078232_1(BT078232|pid:none) Lepeophtheirus salmonis clone lsal... 39 0.47 (Q8MVR1) RecName: Full=Cyclic GMP-binding protein C; EC... 39 0.62 BT047830_1(BT047830|pid:none) Salmo salar clone ssal-rgb2-544-37... 39 0.62 CP000234_88(CP000234|pid:none) Lactobacillus salivarius UCC118 p... 38 0.81 AY072115_1(AY072115|pid:none) Arabidopsis thaliana unknown prote... 38 0.81 BC061308_1(BC061308|pid:none) Xenopus tropicalis synaptosomal-as... 38 0.81 AF072674_1(AF072674|pid:none) Kluyveromyces lactis Sft1p (SFT1) ... 38 0.81 (Q946Y7) RecName: Full=Syntaxin-61; Short=AtSYP61; AltN... 38 0.81 AF404746_1(AF404746|pid:none) Chlamydomonas reinhardtii syntaxin... 38 1.1 BC096970_1(BC096970|pid:none) Danio rerio zgc:101731, mRNA (cDNA... 38 1.1 BC053241_1(BC053241|pid:none) Danio rerio syntaxin 8, mRNA (cDNA... 38 1.1 AY816002_1(AY816002|pid:none) Schistosoma japonicum SJCHGC04860 ... 38 1.1 DQ167758_1(DQ167758|pid:none) Drosophila yakuba putative Laminin... 38 1.1 AC128638_25(AC128638|pid:none) Medicago truncatula clone mth2-36... 38 1.1 BT041407_1(BT041407|pid:none) Zea mays full-length cDNA clone ZM... 38 1.1 CP000721_305(CP000721|pid:none) Clostridium beijerinckii NCIMB 8... 37 1.4 (Q9UNK0) RecName: Full=Syntaxin-8; &AF036715_1(AF036715|pid:non... 37 1.4 AY247208_1(AY247208|pid:none) Hordeum vulgare subsp. vulgare SNA... 37 1.4 (Q8CB44) RecName: Full=GRAM domain-containing protein 4; AltName... 37 1.4 (Q0II86) RecName: Full=Synaptosomal-associated protein 29; ... 37 1.4 DQ167755_1(DQ167755|pid:none) Drosophila orena putative Laminin ... 37 1.4 BC021523_1(BC021523|pid:none) Mus musculus GRAM domain containin... 37 1.4 FN392319_161(FN392319|pid:none) Pichia pastoris GS115 chromosome... 37 1.8 BC149715_1(BC149715|pid:none) Bos taurus GRAM domain containing ... 37 1.8 CU928180_386(CU928180|pid:none) Kluyveromyces thermotolerans str... 37 1.8 AB279868_1(AB279868|pid:none) Aspergillus oryzae Aosyn8 gene for... 37 1.8 CP001078_2832(CP001078|pid:none) Clostridium botulinum E3 str. A... 37 1.8 CR382124_224(CR382124|pid:none) Kluyveromyces lactis strain NRRL... 37 1.8 CP000089_784(CP000089|pid:none) Dechloromonas aromatica RCB, com... 37 1.8 FM178379_602(FM178379|pid:none) Aliivibrio salmonicida LFI1238 c... 37 1.8 FN392319_555(FN392319|pid:none) Pichia pastoris GS115 chromosome... 37 1.8 FN357398_9(FN357398|pid:none) Schistosoma mansoni genome sequenc... 37 1.8 BC041208_1(BC041208|pid:none) Xenopus laevis synaptosomal-associ... 37 1.8 CR940347_687(CR940347|pid:none) Theileria annulata strain Ankara... 37 2.3 (O88384) RecName: Full=Vesicle transport through interaction wit... 37 2.3 AY810255_1(AY810255|pid:none) Schistosoma japonicum SJCHGC05633 ... 37 2.3 AB261079_1(AB261079|pid:none) Entamoeba histolytica gene for EhS... 37 2.3 BC009810_1(BC009810|pid:none) Mus musculus vesicle transport thr... 37 2.3 (Q9HGN3) RecName: Full=t-SNARE affecting a late Golgi compartmen... 37 2.3 AE017341_620(AE017341|pid:none) Cryptococcus neoformans var. neo... 37 2.3 AL132966_24(AL132966|pid:none) Arabidopsis thaliana DNA chromoso... 36 3.1 AY125511_1(AY125511|pid:none) Arabidopsis thaliana AT3g53540/F4P... 36 3.1 T15511(T15511)hypothetical protein C15C7.1 - Caenorhabditis eleg... 36 3.1 CR954210_7(CR954210|pid:none) Ostreococcus tauri strain OTTH0595... 36 3.1 (P83528) RecName: Full=Putative syntaxin C15C7.1; &U41528_4(U41... 36 3.1 AC010155_7(AC010155|pid:none) Genomic sequence for Arabidopsis t... 36 3.1 AY823088_1(AY823088|pid:none) Borrelia hermsii isolate FRO P-553... 36 3.1 AY692277_1(AY692277|pid:none) Borrelia hermsii P-553 gene, compl... 36 3.1 (Q9Y751) RecName: Full=Sterol 3-beta-glucosyltransferase; ... 36 3.1 CU928168_258(CU928168|pid:none) Kluyveromyces thermotolerans str... 36 3.1 CU633900_230(CU633900|pid:none) Podospora anserina genomic DNA c... 36 4.0 AY449459_6(AY449459|pid:none) Oikopleura dioica clone BACOIKO003... 36 4.0 AE017333_28(AE017333|pid:none) Bacillus licheniformis DSM 13, co... 36 4.0 A97244(A97244) moaA/NirJ family Fe-S oxidoreductase CAC2796 [imp... 36 4.0 BA000016_1884(BA000016|pid:none) Clostridium perfringens str. 13... 35 5.2 BC087568_1(BC087568|pid:none) Xenopus tropicalis hypothetical LO... 35 5.2 (Q6LUI8) RecName: Full=Polyribonucleotide nucleotidyltransferase... 35 5.2 AY891199_1(AY891199|pid:none) Synthetic construct Homo sapiens c... 35 5.2 FM954972_2355(FM954972|pid:none) Vibrio splendidus LGP32 chromos... 35 5.2 CP001230_1336(CP001230|pid:none) Persephonella marina EX-H1, com... 35 5.2 AY893745_1(AY893745|pid:none) Synthetic construct Homo sapiens c... 35 5.2 AB173527_1(AB173527|pid:none) Macaca fascicularis brain cDNA clo... 35 5.2 AF035824_1(AF035824|pid:none) Homo sapiens vesicle soluble NSF a... 35 5.2 (P43682) RecName: Full=Protein transport protein SFT1; AltName: ... 35 5.2 (A7MZI2) RecName: Full=Polyribonucleotide nucleotidyltransferase... 35 5.2 AL096766_3(AL096766|pid:none) Human DNA sequence from clone RP6-... 35 5.2 (Q6IC98) RecName: Full=GRAM domain-containing protein 4; AltName... 35 5.2 (Q54IX6) RecName: Full=Probable syntaxin-8B; 35 6.8 (Q3T075) RecName: Full=Syntaxin-8; &BC102537_1(BC102537|pid:none) 35 6.8 BT045313_1(BT045313|pid:none) Salmo salar clone ssal-rgf-518-082... 35 6.8 (Q7MI20) RecName: Full=Polyribonucleotide nucleotidyltransferase... 35 6.8 BA000037_2697(BA000037|pid:none) Vibrio vulnificus YJ016 DNA, ch... 35 6.8 CP000407_848(CP000407|pid:none) Streptococcus suis 05ZYH33, comp... 35 8.9 M25063_1(M25063|pid:none) Drosophila mRNA for laminin B2 chain. ... 35 8.9 AM942759_3391(AM942759|pid:none) Proteus mirabilis strain HI4320... 35 8.9 AK067544_1(AK067544|pid:none) Oryza sativa Japonica Group cDNA c... 35 8.9 AB090308_4(AB090308|pid:none) Bombyx mori Bmtitin1, Bmtitin2, Bm... 35 8.9 AC142394_12(AC142394|pid:none) Medicago truncatula clone mth2-11... 35 8.9 AY884835_1(AY884835|pid:none) Pichia angusta Vam7p (VAM7) gene, ... 35 8.9 CP000414_1501(CP000414|pid:none) Leuconostoc mesenteroides subsp... 35 8.9 AC105363_8(AC105363|pid:none) Oryza sativa (japonica cultivar-gr... 35 8.9 (Q87M06) RecName: Full=Polyribonucleotide nucleotidyltransferase... 35 8.9 (P15215) RecName: Full=Laminin subunit gamma-1; AltName: Full=La... 35 8.9 BA000001_1852(BA000001|pid:none) Pyrococcus horikoshii OT3 DNA, ... 35 8.9 (Q5E7L1) RecName: Full=Polyribonucleotide nucleotidyltransferase... 35 8.9
>BX649388_10(BX649388|pid:none) Zebrafish DNA sequence from clone CH211-225P5 in linkage group 16 Contains the gene for a novel protein (zgc:5777174), the gene for a novel protein similar to vertebrate v-ets erythroblastosis virus E26 oncogene (avian) (ETS), the gene for a novel protein similar to vertebrate sodium channel voltage-gated type I beta (SCN1B), the 3' end of the gene for a novel protein similar to vertebrate DYRK1A, the caspa gene for caspase a, the gene for a novel protein (zgc:66432), the asc1 gene for asc1, four novel genes and a CpG island, complete sequence. Length = 554
Score = 67.4 bits (163), Expect = 1e-09 Identities = 41/110 (37%), Positives = 64/110 (58%), Gaps = 6/110 (5%) Frame = +1
Query: 82 KVKTELVRRTFN-YPETENVIQDYSCALNKVTL--GKMYITENFLSFIASI--GSTTETI 246 K + E R+ F P+TE +I DYSCAL K L G++Y++EN+L F ++I TT TI Sbjct: 14 KQRNEDFRKLFKKLPDTERLIVDYSCALQKDILLQGRLYLSENWLCFYSNIFRWETTITI 73
Query: 247 PLRKILEMKKDTTL-FVNNAITFKTAEQLVSFGTFSHRDEAFTLIYHLWK 393 L+ + + K+ T + NAI T + F +F RD ++ +I+ LW+ Sbjct: 74 LLKDVTNLTKEKTAKLIPNAIQISTENEKHFFTSFGARDRSYMMIFRLWQ 123
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3204285 Number of Hits to DB: 2,174,117,109 Number of extensions: 42800409 Number of successful extensions: 119418 Number of sequences better than 10.0: 228 Number of HSP's gapped: 119278 Number of HSP's successfully gapped: 228 Length of query: 486 Length of database: 1,040,966,779 Length adjustment: 133 Effective length of query: 353 Effective length of database: 614,796,874 Effective search space: 217023296522 Effective search space used: 217023296522 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
1 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
1 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
1 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |