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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U09099-1
Contig ID Contig-U09099-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U09099-1 (Contig-U09099-1Q) /CSM_Contig/Contig-U09099-1Q.Seq.d
AAAATTAATAAAACAAATAAATTATTTTTATAAAATTAATAAATAAATTA
GATTTAGAAAAAAAAAAAAAAAAAAAAAAAANNAANTTTTTTAAAAAAAA
A----------AGTTTTTTGATTTGTGTTCCAAATGCAACATCTCAAACA
CTTTCAACAGCCATCACATTGAAAGTTGATTTCGGTTCTATAACACCATA
TGTCAATAGTGAGTGTGGTGGCATTTTGGATAGTAGCGATACCACAATCT
ATCCACCATGTAAAAGTTTTAAAGACGCAGGCAATAGAGCCAGACAATAT
CTCAACAGTGGACTTGCAATTCCAAATAGTAACTACCTCACCATCAGTGT
TATTAATACTGCAATTACACCAAACATTGACGGTGAATCAGCTCAACTTG
GAAACCTTTTTGGATTTTGTACTGTCGATATTTTAATTGCCACCACCACA
TCACGTGCAATTGTAGATGGAACTTTATCAACATCTCACTTTGTCAGTCT
CCAAGAACCAAATGTTCCAAACACATCATACCAATGTAGTTCTGGAAAAA
CATTAAGAATTAGAAATATTGAATTTAAAAATTGGGGTAACCAAACAATC
GTATACACCAATTTAAATCAAGTTTTCAATAGCCTCACCAAGCAATCCAT
TTTCTTCGCAACAGTATACACATGGTTTTCCAACAGTATTATCAACGTTC
AACCAAAAGGCACAAACTTTGAATATGGATCTGTAGCTTTTCAATGCAGT
ATTTGCTATTTTAATAACATCAATTCATCATTAACTTTACCACCATTCAA
CTTTAATGGTGCCAATGTAGTTATTATAGGCTCTCGTTTCCTTAATTCCA
TATTAAACTCATCACCATTTATTTACTCAAATATCGGTCTCTTCAATTTA
AAGGCAACAAGTTTAATTGATAATGTCGTTATCAATAATGGTCATCCATT
TGTAAAAACTTTGAATGTTGGCGATAATTTTTACTACACTGGCGTTACAG
TCTCCAATTGCCAATTCTCAAAATTTATACAACACGAAAATAACAAAATC
AATGCTCCAAGAGAATCTGCAATTCTACATATCTCAACTATGTATTTAAT
TAATAACATTATCACCTCAAACTACAATGATCCAACAAATTCATTTTTTT
CATTCCAAAATTTCATTGGTGCGTCTTATACCTTGGATTTTAATACTATA
TCTTCATCAGGTAACATCGTTCTCGGTCAAAACAAATCTTTTATTTCTAA
TCAAAATTCAAATTCCACGAGCTCTTTCTCAGAACCTCCAAGTGATTTCC
AAATAGGGTTTAACACTGAAAATTCACACACTGATATATTATATTCAAGC
GTTTTATCAACCATTCCTTTTGTTGGATCCAATTCAATCTTTACTTTCTC
CTCCTCTGGTGATTGTATTATCGCAAACACTGCAAATTATAACCATTGTG
GTACCTGTCAAATTATAGTTGATTCTGATATAAAATATGATAATCTATAA
GCAAAATAAATATTTTTTTTAAAATCAATTTTTTTTATTAAATATAATAG
AAAAAAAAAATAA
Gap gap included
Contig length 1553
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 9
Number of EST 12
Link to clone list U09099
List of clone(s) 

est1=SFJ884F,1,102
est2=VFC639F,103,691
est3=VFK894F,376,982
est4=SFE589Z,798,1371
est5=SFJ884Z,813,1328
est6=VFD820Z,867,1389
est7=VFC639Z,883,1551
est8=VFG368Z,893,1389
est9=SLF358Z,962,1498
est10=VFB351Z,964,1391
est11=VFK894Z,1064,1419
est12=SLJ337Z,1296,1555
Translated Amino Acid sequence 
n**nk*IIFIKLINKLDLEKKKKKKKXXFFKKK---

---SFLICVPNATSQTLSTAITLKVDFGSITPYVNSECGGILDSSDTTIYPPCKSFKDAG
NRARQYLNSGLAIPNSNYLTISVINTAITPNIDGESAQLGNLFGFCTVDILIATTTSRAI
VDGTLSTSHFVSLQEPNVPNTSYQCSSGKTLRIRNIEFKNWGNQTIVYTNLNQVFNSLTK
QSIFFATVYTWFSNSIINVQPKGTNFEYGSVAFQCSICYFNNINSSLTLPPFNFNGANVV
IIGSRFLNSILNSSPFIYSNIGLFNLKATSLIDNVVINNGHPFVKTLNVGDNFYYTGVTV
SNCQFSKFIQHENNKINAPRESAILHISTMYLINNIITSNYNDPTNSFFSFQNFIGASYT
LDFNTISSSGNIVLGQNKSFISNQNSNSTSSFSEPPSDFQIGFNTENSHTDILYSSVLST
IPFVGSNSIFTFSSSGDCIIANTANYNHCGTCQIIVDSDIKYDNL*ak*ifflksiffik
ynrkkk*
Translated Amino Acid sequence (All Frames) 
Frame A:
kinktnklfl*n**in*i*kkkkkkkkxxflkk---

---SFLICVPNATSQTLSTAITLKVDFGSITPYVNSECGGILDSSDTTIYPPCKSFKDAG
NRARQYLNSGLAIPNSNYLTISVINTAITPNIDGESAQLGNLFGFCTVDILIATTTSRAI
VDGTLSTSHFVSLQEPNVPNTSYQCSSGKTLRIRNIEFKNWGNQTIVYTNLNQVFNSLTK
QSIFFATVYTWFSNSIINVQPKGTNFEYGSVAFQCSICYFNNINSSLTLPPFNFNGANVV
IIGSRFLNSILNSSPFIYSNIGLFNLKATSLIDNVVINNGHPFVKTLNVGDNFYYTGVTV
SNCQFSKFIQHENNKINAPRESAILHISTMYLINNIITSNYNDPTNSFFSFQNFIGASYT
LDFNTISSSGNIVLGQNKSFISNQNSNSTSSFSEPPSDFQIGFNTENSHTDILYSSVLST
IPFVGSNSIFTFSSSGDCIIANTANYNHCGTCQIIVDSDIKYDNL*ak*ifflksiffik
ynrkkk*

Frame B:
klikqinyfykink*irfrkkkkkkkxxxf*kk---

---vf*fvfqmqhlkhfqqpsh*klisvl*hhmsivsvvafwivaipqsihhvkvlktqa
iepdnistvdlqfqivttspsvllilqlhqtltvnqlnletfldfvlsif*lppphhvql
*melyqhltlsvsknqmfqthhtnvvlekh*eleilnlkigvtkqsytpi*ikfsiasps
npfssqqythgfptvlstfnqkaqtlnmdl*lfnavfailitsihh*lyhhstlmvpm*l
l*alvslipy*thhhlftqisvssi*rqqv*limslsimvihl*kl*mlaiifttlalqs
piansqnlyntkitksmlqenlqfyisqlci*litlspqttmiqqihffhskislvrlip
wililylhqvtsfsvktnllflikiqipralsqnlqvisk*gltlkihtliyyiqafyqp
fllldpiqsllspplvivlsqtlqiitivvpvkl*lili*nmiiykqnkyff*nqfflln
iiekkn

Frame C:
n**nk*IIFIKLINKLDLEKKKKKKKXXFFKKK---

---ffdlcskcnisntfnshhies*frfynticq**vwwhfg**ryhnlstm*kf*rrrq
*sqtisqqwtcnsk**lphhqcy*ycnytkh*r*isstwkpfwilycryfnchhhitcnc
rwnfinislcqsprtkcskhiipm*fwknikn*ky*i*klg*pnnrihqfkssfq*phqa
ihflrnsihmvfqqyyqrstkrhkl*iwicsfsmqyllf**hqfiinfttiql*wcqcsy
yrlsfp*fhiklitiyllkyrslqfkgnkfn**cryq*wssicknfecwr*fllhwrysl
qlpilkiyttrk*qnqcskricnstylnyvfn**hyhlklq*snkfiffipkfhwcvlyl
gf*yyifir*hrsrskqifyf*skfkfhelflrtsk*fpnrv*h*kfth*yiifkrfinh
sfcwiqfnlyflllw*lyyrkhckl*plwylsnys*f*yki**siskiniffkinffy*i
**kkki
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U09099-1 (Contig-U09099-1Q)
/CSM_Contig/Contig-U09099-1Q.Seq.d
         (1563 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09099-1 (Contig-U09099-1Q) /CSM_Contig/Conti...  2763  0.0
Contig-U13357-1 (Contig-U13357-1Q) /CSM_Contig/Conti...    38  0.028
Contig-U13354-1 (Contig-U13354-1Q) /CSM_Contig/Conti...    38  0.028
Contig-U09163-1 (Contig-U09163-1Q) /CSM_Contig/Conti...    38  0.028
Contig-U13839-1 (Contig-U13839-1Q) /CSM_Contig/Conti...    36  0.11
Contig-U12417-1 (Contig-U12417-1Q) /CSM_Contig/Conti...    36  0.11
Contig-U05528-1 (Contig-U05528-1Q) /CSM_Contig/Conti...    36  0.11
Contig-U12252-1 (Contig-U12252-1Q) /CSM_Contig/Conti...    34  0.44
Contig-U12238-1 (Contig-U12238-1Q) /CSM_Contig/Conti...    34  0.44

>Contig-U09099-1 (Contig-U09099-1Q) /CSM_Contig/Contig-U09099-1Q.Seq.d
          Length = 1563

 Score = 2763 bits (1394), Expect = 0.0
 Identities = 1424/1439 (98%)
 Strand = Plus / Plus

                                                                        
Query: 112  agttttttgatttgtgttccaaatgcaacatctcaaacactttcaacagccatcacattg 171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112  agttttttgatttgtgttccaaatgcaacatctcaaacactttcaacagccatcacattg 171

                                                                        
Query: 172  aaagttgatttcggttctataacaccatatgtcaatagtgagtgtggtggcattttggat 231
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172  aaagttgatttcggttctataacaccatatgtcaatagtgagtgtggtggcattttggat 231

                                                                        
Query: 232  agtagcgataccacaatctatccaccatgtaaaagttttaaagacgcaggcaatagagcc 291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232  agtagcgataccacaatctatccaccatgtaaaagttttaaagacgcaggcaatagagcc 291

                                                                        
Query: 292  agacaatatctcaacagtggacttgcaattccaaatagtaactacctcaccatcagtgtt 351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292  agacaatatctcaacagtggacttgcaattccaaatagtaactacctcaccatcagtgtt 351

                                                                        
Query: 352  attaatactgcaattacaccaaacattgacggtgaatcagctcaacttggaaaccttttt 411
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352  attaatactgcaattacaccaaacattgacggtgaatcagctcaacttggaaaccttttt 411

                                                                        
Query: 412  ggattttgtactgtcgatattttaattgccaccaccacatcacgtgcaattgtagatgga 471
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412  ggattttgtactgtcgatattttaattgccaccaccacatcacgtgcaattgtagatgga 471

                                                                        
Query: 472  actttatcaacatctcactttgtcagtctccaagaaccaaatgttccaaacacatcatac 531
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472  actttatcaacatctcactttgtcagtctccaagaaccaaatgttccaaacacatcatac 531

                                                                        
Query: 532  caatgtagttctggaaaaacattaagaattagaaatattgaatttaaaaattggggtaac 591
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532  caatgtagttctggaaaaacattaagaattagaaatattgaatttaaaaattggggtaac 591

                                                                        
Query: 592  caaacaatcgtatacaccaatttaaatcaagttttcaatagcctcaccaagcaatccatt 651
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592  caaacaatcgtatacaccaatttaaatcaagttttcaatagcctcaccaagcaatccatt 651

                                                                        
Query: 652  ttcttcgcaacagtatacacatggttttccaacagtattatcaacgttcaaccaaaaggc 711
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652  ttcttcgcaacagtatacacatggttttccaacagtattatcaacgttcaaccaaaaggc 711

                                                                        
Query: 712  acaaactttgaatatggatctgtagcttttcaatgcagtatttgctattttaataacatc 771
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712  acaaactttgaatatggatctgtagcttttcaatgcagtatttgctattttaataacatc 771

                                                                        
Query: 772  aattcatcattaactttaccaccattcaactttaatggtgccaatgtagttattataggc 831
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772  aattcatcattaactttaccaccattcaactttaatggtgccaatgtagttattataggc 831

                                                                        
Query: 832  tctcgtttccttaattccatattaaactcatcaccatttatttactcaaatatcggtctc 891
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832  tctcgtttccttaattccatattaaactcatcaccatttatttactcaaatatcggtctc 891

                                                                        
Query: 892  ttcaatttaaaggcaacaagtttaattgataatgtcgttatcaataatggtcatccattt 951
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892  ttcaatttaaaggcaacaagtttaattgataatgtcgttatcaataatggtcatccattt 951

                                                                        
Query: 952  gtaaaaactttgaatgttggcgataatttttactacactggcgttacagtctccaattgc 1011
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952  gtaaaaactttgaatgttggcgataatttttactacactggcgttacagtctccaattgc 1011

                                                                        
Query: 1012 caattctcaaaatttatacaacacgaaaataacaaaatcaatgctccaagagaatctgca 1071
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 caattctcaaaatttatacaacacgaaaataacaaaatcaatgctccaagagaatctgca 1071

                                                                        
Query: 1072 attctacatatctcaactatgtatttaattaataacattatcacctcaaactacaatgat 1131
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1072 attctacatatctcaactatgtatttaattaataacattatcacctcaaactacaatgat 1131

                                                                        
Query: 1132 ccaacaaattcannnnnnncattccaaaatttcattggtgcgtcttataccttggatttt 1191
            ||||||||||||       |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1132 ccaacaaattcatttttttcattccaaaatttcattggtgcgtcttataccttggatttt 1191

                                                                        
Query: 1192 aatactatatcttcatcaggtaacatcgttctcggtcaaaacaaatcttttatttctaat 1251
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1192 aatactatatcttcatcaggtaacatcgttctcggtcaaaacaaatcttttatttctaat 1251

                                                                        
Query: 1252 caaaattcaaattccacgagctctttctcagaacctccaagtgatttccaaatagggttt 1311
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1252 caaaattcaaattccacgagctctttctcagaacctccaagtgatttccaaatagggttt 1311

                                                                        
Query: 1312 aacactgaaaattcacacactgatatattatattcaagcgttttatcaaccattcctttt 1371
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1312 aacactgaaaattcacacactgatatattatattcaagcgttttatcaaccattcctttt 1371

                                                                        
Query: 1372 gttggatccaattcaatctttactttctcctcctctggtgattgtattatcgcaaacact 1431
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1372 gttggatccaattcaatctttactttctcctcctctggtgattgtattatcgcaaacact 1431

                                                                        
Query: 1432 gcaaattataaccattgtggtacctgtcaaattatagttgattctgatataaaatatgat 1491
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1432 gcaaattataaccattgtggtacctgtcaaattatagttgattctgatataaaatatgat 1491

                                                                       
Query: 1492 aatctataagcaaaataaatannnnnnnnaaaatcaattttttttattaaatataatag 1550
            |||||||||||||||||||||        ||||||||||||||||||||||||||||||
Sbjct: 1492 aatctataagcaaaataaatattttttttaaaatcaattttttttattaaatataatag 1550


>Contig-U13357-1 (Contig-U13357-1Q) /CSM_Contig/Contig-U13357-1Q.Seq.d
          Length = 559

 Score = 38.2 bits (19), Expect = 0.028
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 314 ttgcaattccaaatagtaa 332
           |||||||||||||||||||
Sbjct: 78  ttgcaattccaaatagtaa 96


>Contig-U13354-1 (Contig-U13354-1Q) /CSM_Contig/Contig-U13354-1Q.Seq.d
          Length = 908

 Score = 38.2 bits (19), Expect = 0.028
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 558 aattagaaatattgaattt 576
           |||||||||||||||||||
Sbjct: 174 aattagaaatattgaattt 192


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,581
Number of Sequences: 6905
Number of extensions: 20581
Number of successful extensions: 1904
Number of sequences better than 10.0: 187
length of query: 1563
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1547
effective length of database: 5,564,391
effective search space: 8608112877
effective search space used: 8608112877
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.14
Homology vs DNA 
Query= Contig-U09099-1 (Contig-U09099-1Q) /CSM_Contig/Contig-U09099-1Q.Seq.d
         (1563 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ415542) Dictyostelium discoideum cDNA clone:ddv22l24, 5' ...  1201   0.0    1
(BJ411947) Dictyostelium discoideum cDNA clone:ddv6m10, 5' e...  1168   0.0    1
(BJ430198) Dictyostelium discoideum cDNA clone:ddv6m10, 3' e...   668   0.0    2
(BJ398043) Dictyostelium discoideum cDNA clone:dds10a23, 3' ...   668   0.0    2
(BJ430641) Dictyostelium discoideum cDNA clone:ddv8h06, 3' e...   525   0.0    2
(BJ431284) Dictyostelium discoideum cDNA clone:ddv13h17, 3' ...   490   0.0    2
(BJ429458) Dictyostelium discoideum cDNA clone:ddv3f13, 3' e...   490   0.0    2
(BJ433780) Dictyostelium discoideum cDNA clone:ddv22l24, 3' ...   442   e-144  2
(AU053655) Dictyostelium discoideum slug cDNA, clone SLJ337.      392   e-104  1
(BJ402210) Dictyostelium discoideum cDNA clone:dds20h22, 3' ...   389   e-103  1
(AU052943) Dictyostelium discoideum slug cDNA, clone SLF358.      113   2e-20  1
(AW345166) 25456 MARC 4BOV Bos taurus cDNA 5', mRNA sequence.      36   0.28   3
(AE002126) Ureaplasma parvum serovar 3 str. ATCC 700970 sect...    38   0.58   4
(AM487981) Vitis vinifera, whole genome shotgun sequence, co...    44   0.64   4
(AM005580) Bos taurus 3' EST, clone C0007385e23.                   36   0.96   3
(FI010539) CHO_OF6906xc21r1.ab1 CHO_OF6 Nicotiana tabacum ge...    48   1.0    1
(EJ291755) 1095386002495 Global-Ocean-Sampling_GS-27-01-01-1...    48   1.0    1
(AM006075) Bos taurus 5' EST, clone C0005920e23.                   36   1.1    3
(AM006430) Bos taurus 5' EST, clone C0007385e23.                   36   1.1    3
(EU101386) Bos indicus pro-melanin-concentrating hormone (PM...    36   3.0    3
(EU113045) Bos indicus pro-melanin-concentrating hormone (PM...    36   3.0    3
(DQ499531) Bos taurus pro-melanin concentrating hormone (PMC...    36   3.0    3
(CT573112) Zebrafish DNA sequence from clone CH73-115E6 in l...    46   4.0    1
(CR855309) Zebrafish DNA sequence from clone DKEY-35B7 in li...    46   4.0    1
(BX842688) Zebrafish DNA sequence from clone DKEY-202E17 in ...    46   4.0    1
(BX072540) Zebrafish DNA sequence from clone CH211-103M6 in ...    46   4.0    1
(BC150408) Danio rerio cDNA clone IMAGE:7436430.                   46   4.0    1
(BC135036) Danio rerio cDNA clone IMAGE:7158648.                   46   4.0    1
(BC083533) Danio rerio cDNA clone IMAGE:7086778.                   46   4.0    1
(AC149208) Medicago truncatula chromosome 7 clone mth2-156l8...    46   4.0    1
(AC135234) Medicago truncatula clone mth2-18a1, complete seq...    46   4.0    1
(CU695047) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   4.0    1
(BX936407) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   4.0    1
(AC222876) Bos taurus clone CH240-436G22, WORKING DRAFT SEQU...    46   4.0    1
(AC218443) Bos taurus clone CH240-274J7, WORKING DRAFT SEQUE...    46   4.0    1
(AC184962) Bos taurus clone CH240-302K15, WORKING DRAFT SEQU...    46   4.0    1
(CT121604) Sus scrofa genomic clone PigE-234B17, genomic sur...    46   4.0    1
(CR332376) mte1-61H24RM1 BAC end, cultivar Jemalong A17 of M...    46   4.0    1
(CR303977) mte1-23E23RM1 BAC end, cultivar Jemalong A17 of M...    46   4.0    1
(CR299642) mte1-17L7RM1 BAC end, cultivar Jemalong A17 of Me...    46   4.0    1
(CV707926) UCRPT01_0010I16_r Poncirus trifoliata CTV-challen...    46   4.0    1
(CK694030) ZF101-P00065-DEPE-F2_B22 GISZF001_ra Danio rerio ...    46   4.0    1
(CK363556) AGENCOURT_17170727 NIH_ZGC_4 Danio rerio cDNA clo...    46   4.0    1
(FG671982) G1143P328FN19.T0 Anolis carolinensis pooled norma...    46   4.0    1
(EX330610) GQ02901.SP6_E20 GQ029 - Xylem scrapings - AT NITE...    46   4.0    1
(EX330250) GQ02901.B7_E20 GQ029 - Xylem scrapings - AT NITE ...    46   4.0    1
(CE658116) tigr-gss-dog-17000368417851 Dog Library Canis lup...    36   4.4    2
(AL139378) Human DNA sequence from clone RP11-271B5 on chrom...    38   6.7    6
(AC179696) Bos taurus clone CH240-397F11, WORKING DRAFT SEQU...    32   7.4    2
(AF416376) Drosophila virilis defective chorion-1 fc177 prot...    34   9.0    2
(AM459550) Vitis vinifera contig VV78X103872.10, whole genom...    38   9.2    3
(BV243944) S234P6528RD6.T0 EnglishShepherd Canis familiaris ...    38   9.3    2
(BB976401) Plasmodium berghei strain ANKA cDNA clone:OK00629...    36   9.6    3

>(BJ415542) Dictyostelium discoideum cDNA clone:ddv22l24, 5' end,
           single read.
          Length = 607

 Score = 1201 bits (606), Expect = 0.0
 Identities = 606/606 (100%)
 Strand = Plus / Plus


Query: 386 aatcagctcaacttggaaacctttttggattttgtactgtcgatattttaattgccacca 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2   aatcagctcaacttggaaacctttttggattttgtactgtcgatattttaattgccacca 61


Query: 446 ccacatcacgtgcaattgtagatggaactttatcaacatctcactttgtcagtctccaag 505
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  ccacatcacgtgcaattgtagatggaactttatcaacatctcactttgtcagtctccaag 121


Query: 506 aaccaaatgttccaaacacatcataccaatgtagttctggaaaaacattaagaattagaa 565
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 aaccaaatgttccaaacacatcataccaatgtagttctggaaaaacattaagaattagaa 181


Query: 566 atattgaatttaaaaattggggtaaccaaacaatcgtatacaccaatttaaatcaagttt 625
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 atattgaatttaaaaattggggtaaccaaacaatcgtatacaccaatttaaatcaagttt 241


Query: 626 tcaatagcctcaccaagcaatccattttcttcgcaacagtatacacatggttttccaaca 685
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tcaatagcctcaccaagcaatccattttcttcgcaacagtatacacatggttttccaaca 301


Query: 686 gtattatcaacgttcaaccaaaaggcacaaactttgaatatggatctgtagcttttcaat 745
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gtattatcaacgttcaaccaaaaggcacaaactttgaatatggatctgtagcttttcaat 361


Query: 746 gcagtatttgctattttaataacatcaattcatcattaactttaccaccattcaacttta 805
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gcagtatttgctattttaataacatcaattcatcattaactttaccaccattcaacttta 421


Query: 806 atggtgccaatgtagttattataggctctcgtttccttaattccatattaaactcatcac 865
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 atggtgccaatgtagttattataggctctcgtttccttaattccatattaaactcatcac 481


Query: 866 catttatttactcaaatatcggtctcttcaatttaaaggcaacaagtttaattgataatg 925
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 catttatttactcaaatatcggtctcttcaatttaaaggcaacaagtttaattgataatg 541


Query: 926 tcgttatcaataatggtcatccatttgtaaaaactttgaatgttggcgataatttttact 985
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tcgttatcaataatggtcatccatttgtaaaaactttgaatgttggcgataatttttact 601


Query: 986 acactg 991
           ||||||
Sbjct: 602 acactg 607

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,645,774,834
Number of extensions: 95967565
Number of successful extensions: 7229039
Number of sequences better than 10.0: 54
Length of query: 1563
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1539
Effective length of database: 97,308,875,965
Effective search space: 149758360110135
Effective search space used: 149758360110135
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.25
Homology vs Protein 
Query= Contig-U09099-1 (Contig-U09099-1Q) /CSM_Contig/Contig-U09099-1Q.Seq.d
         (1563 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116957_106(AC116957|pid:none) Dictyostelium discoideum chromos...    83   3e-14
AF020283_1(AF020283|pid:none) Dictyostelium discoideum DG2044 ge...    76   3e-12
AL844509_625(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    49   7e-04
AE014187_629(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    44   0.012
AC116982_12(AC116982|pid:none) Dictyostelium discoideum chromoso...    44   0.021
T17519(T17519) cell surface antigen-like protein A29L - Chlorell...    42   0.047
CP001185_1233(CP001185|pid:none) Thermosipho africanus TCF52B, c...    42   0.080
DQ075323_1(DQ075323|pid:none) Avian infectious bronchitis virus ...    41   0.10
(Q96WV6) RecName: Full=Uncharacterized threonine-rich GPI-anchor...    41   0.10
BA000026_188(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c...    41   0.14
CU179680_265(CU179680|pid:none) Mycoplasma agalactiae PG2 chromo...    40   0.23
CP000678_173(CP000678|pid:none) Methanobrevibacter smithii ATCC ...    40   0.30
AY606320_1(AY606320|pid:none) Avian infectious bronchitis virus ...    39   0.40
AY561715_1(AY561715|pid:none) Avian infectious bronchitis virus ...    39   0.52
AL844509_417(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.52
L36900_1(L36900|pid:none) Saccharomyces cerevisiae mitochondrion...    39   0.52
AF510565_1(AF510565|pid:none) Avian infectious bronchitis virus ...    39   0.52
CR925677_873(CR925677|pid:none) Ehrlichia ruminantium str. Garde...    39   0.52
AF352831_1(AF352831|pid:none) Avian infectious bronchitis virus ...    39   0.68
FJ807926_1(FJ807926|pid:none) Infectious bronchitis virus isolat...    39   0.68
DQ901375_1(DQ901375|pid:none) Infectious bronchitis virus isolat...    39   0.68
AF074946_5(AF074946|pid:none) Hemorrhagic enteritis virus, compl...    38   0.89
FJ807920_1(FJ807920|pid:none) Infectious bronchitis virus isolat...    38   0.89
AF538053_17(AF538053|pid:none) Monosiga brevicollis mitochondrio...    38   0.89
CP000117_2211(CP000117|pid:none) Anabaena variabilis ATCC 29413,...    38   1.2
(P13824) RecName: Full=Clustered-asparagine-rich protein;       ...    38   1.2
AF419314_1(AF419314|pid:none) Avian infectious bronchitis virus ...    38   1.2
CP000102_143(CP000102|pid:none) Methanosphaera stadtmanae DSM 30...    38   1.2
AE001439_852(AE001439|pid:none) Helicobacter pylori J99, complet...    38   1.2
A23535(A23535;A49245) clustered asparagine-rich merozoite-associ...    38   1.2
AL844505_89(AL844505|pid:none) Plasmodium falciparum 3D7 chromos...    38   1.2
CP001185_1128(CP001185|pid:none) Thermosipho africanus TCF52B, c...    37   1.5
AY257065_1(AY257065|pid:none) Avian infectious bronchitis virus ...    37   1.5
DQ490209_1(DQ490209|pid:none) Infectious bronchitis virus strain...    37   2.0
CP000102_1066(CP000102|pid:none) Methanosphaera stadtmanae DSM 3...    37   2.0
AF419315_1(AF419315|pid:none) Avian infectious bronchitis virus ...    37   2.0
FJ807946_1(FJ807946|pid:none) Infectious bronchitis virus isolat...    37   2.6
AE014186_378(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    37   2.6
AP009180_111(AP009180|pid:none) Candidatus Carsonella ruddii PV ...    37   2.6
CP001056_2442(CP001056|pid:none) Clostridium botulinum B str. Ek...    37   2.6
CP000102_881(CP000102|pid:none) Methanosphaera stadtmanae DSM 30...    37   2.6
CP000678_1113(CP000678|pid:none) Methanobrevibacter smithii ATCC...    37   2.6
AL844509_369(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    37   2.6
AC116979_96(AC116979|pid:none) Dictyostelium discoideum chromoso...    36   3.4
AY849321_3(AY849321|pid:none) Avirulent turkey hemorrhagic enter...    36   3.4
CR548612_390(CR548612|pid:none) Paramecium tetraurelia macronucl...    36   3.4
FJ008695_1(FJ008695|pid:none) Infectious bronchitis virus strain...    36   3.4
AP008981_300(AP008981|pid:none) Orientia tsutsugamushi str. Iked...    36   3.4
DQ515802_1(DQ515802|pid:none) Infectious bronchitis virus strain...    36   4.4
DQ490213_1(DQ490213|pid:none) Infectious bronchitis virus strain...    36   4.4
CP000102_948(CP000102|pid:none) Methanosphaera stadtmanae DSM 30...    36   4.4
EU579524_1(EU579524|pid:none) Plasmodium berghei sporozoite and ...    36   4.4
AE014188_317(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    36   4.4
DQ490211_1(DQ490211|pid:none) Infectious bronchitis virus strain...    36   4.4
FJ235187_1(FJ235187|pid:none) Infectious bronchitis virus strain...    36   4.4
EU031528_1(EU031528|pid:none) Infectious bronchitis virus strain...    36   4.4
AM910996_386(AM910996|pid:none) Plasmodium knowlesi strain H chr...    36   4.4
U29520_1(U29520|pid:none) Avian infectious bronchitis virus stra...    36   4.4
A71661(A71661) hypothetical protein RP563 - Rickettsia prowazeki...    36   4.4
AF193423_1(AF193423|pid:none) Avian infectious bronchitis virus ...    36   4.4
AF520604_1(AF520604|pid:none) Avian infectious bronchitis virus ...    36   4.4
CP001323_810(CP001323|pid:none) Micromonas sp. RCC299 chromosome...    36   4.4
DQ168618_2(DQ168618|pid:none) Oleria aquata cytochrome oxidase s...    35   5.7
AM048875_1(AM048875|pid:none) Lily mottle virus complete genome,...    35   5.7
U29519_1(U29519|pid:none) Avian infectious bronchitis virus stra...    35   5.7
DQ490210_1(DQ490210|pid:none) Infectious bronchitis virus strain...    35   5.7
CP000102_1351(CP000102|pid:none) Methanosphaera stadtmanae DSM 3...    35   5.7
DQ490215_1(DQ490215|pid:none) Infectious bronchitis virus strain...    35   5.7
FJ235190_1(FJ235190|pid:none) Infectious bronchitis virus isolat...    35   5.7
DQ070839_1(DQ070839|pid:none) Infectious bronchitis virus strain...    35   5.7
(P30207) RecName: Full=Spike glycoprotein;          Short=S glyc...    35   5.7
EF213566_1(EF213566|pid:none) Infectious bronchitis virus strain...    35   5.7
AF397528_1(AF397528|pid:none) Avian infectious bronchitis virus ...    35   5.7
CP000678_461(CP000678|pid:none) Methanobrevibacter smithii ATCC ...    35   5.7
AF151954_1(AF151954|pid:none) Avian infectious bronchitis virus ...    35   5.7
AF027512_1(AF027512|pid:none) Avian infectious bronchitis virus ...    35   5.7
AB084781_1(AB084781|pid:none) Mycoplasma mobile genes for P123, ...    35   5.7
CP000480_5907(CP000480|pid:none) Mycobacterium smegmatis str. MC...    35   7.5
AP004888_14(AP004888|pid:none) Oryza sativa Japonica Group genom...    35   7.5
AC116986_14(AC116986|pid:none) Dictyostelium discoideum chromoso...    35   7.5
AL844508_72(AL844508|pid:none) Plasmodium falciparum 3D7 chromos...    35   7.5
BX571662_80(BX571662|pid:none) Wolinella succinogenes, complete ...    35   7.5
DQ064806_1(DQ064806|pid:none) Avian infectious bronchitis virus ...    35   7.5
(P05135) RecName: Full=Spike glycoprotein;          Short=S glyc...    35   7.5
CP000682_931(CP000682|pid:none) Metallosphaera sedula DSM 5348, ...    35   7.5
AB274268_1(AB274268|pid:none) Infectious bronchitis virus S1 gen...    35   7.5
EU283062_1(EU283062|pid:none) Infectious bronchitis virus isolat...    35   7.5
FJ807928_1(FJ807928|pid:none) Infectious bronchitis virus isolat...    35   7.5
AE017125_857(AE017125|pid:none) Helicobacter hepaticus ATCC 5144...    35   9.8
CP001176_1519(CP001176|pid:none) Bacillus cereus B4264, complete...    35   9.8
AF027511_1(AF027511|pid:none) Avian infectious bronchitis virus ...    35   9.8
AF510334_1(AF510334|pid:none) Avian infectious bronchitis virus ...    35   9.8
AE017261_99(AE017261|pid:none) Picrophilus torridus DSM 9790, co...    35   9.8
AL031745_30(AL031745|pid:none) Plasmodium falciparum DNA from MA...    35   9.8
AE014188_360(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    35   9.8
DQ490217_1(DQ490217|pid:none) Infectious bronchitis virus strain...    35   9.8
AE016877_2488(AE016877|pid:none) Bacillus cereus ATCC 14579, com...    35   9.8
AY790364_1(AY790364|pid:none) Avian infectious bronchitis virus ...    35   9.8
AM260522_1257(AM260522|pid:none) Helicobacter acinonychis str. S...    35   9.8

>AC116957_106(AC116957|pid:none) Dictyostelium discoideum chromosome 2
            map 1685067-2090751 strain AX4, complete sequence.
          Length = 566

 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 95/360 (26%), Positives = 164/360 (45%), Gaps = 24/360 (6%)
 Frame = +1

Query: 211  ECGGILD--SSDTTIYPPCKSFKDAGNRARQYLNSGLAIPNSNYLTISVIN-----TAIT 369
            ECGG ++    DT IYPPCK+F DAG R+RQ L   ++  N   L + ++N     T+ T
Sbjct: 2    ECGGSINIFDLDTKIYPPCKTFYDAGERSRQ-LFENISHINQVSLVLLILNIDLNKTSPT 60

Query: 370  PNIDGESAQLGNLFGFCTVDILIATTTSRAIVDGTLSTSHFVSLQEPNVPNT--SYQCSS 543
             N+ GE    G+L  +C+ +I         I +  +     + +   +V  +   Y
Sbjct: 61   INLIGEKT-FGDLKNYCSFNIDFQDINGNKIKESEIKKKPLLIIDGKSVSRSFIKYAAFE 119

Query: 544  GKTL------RIRNIEFKNWGNQTIVYTN--LNQVFNSLTKQSIFFATVYTWFSNSIINV 699
              TL       I N+ FK+W + T+V++N  LN+ ++SL     +F+++ T  + S   +
Sbjct: 120  NNTLCNKKFISINNLLFKDW-SSTLVFSNSLLNKPYHSL---DFYFSSITT--TGSFKFI 173

Query: 700  QPKGTNFEYGSVA--FQCSICYFNNINSSLTLPPFNFNGANVVIIGSRFLNSILNSSPFI 873
            +    N+  G +   F    C+F N+ +    P F     N+  + +   N  L  SPF
Sbjct: 174  ESVEANYTEGDLPANFIFKDCHFANVTNQYQTPLFYMYFNNISFVDTVLDNMKLVYSPFY 233

Query: 874  YSNIGLFNLKATSLIDNV--VINNGHPFVKTLNVGDNFYYTGVTVSNCQFSKFIQ-HENN 1044
             +   L  +   S+I+N+  + N   P V        FY   +  +N + S F + +
Sbjct: 234  LTMSTL--VMENSIINNIELITNEDLPIVNMNGFVIQFY--NLQFTNNKISTFFKGYFPK 289

Query: 1045 KINAPRESAILHISTMYLINNIITSNYNDPTNSFFSFQNF--IGASYTLDFNTISSSGNI 1218
            + + PR+  I   + ++  NNII+ +    +NSF +   F  + + Y    NTI S+  I
Sbjct: 290  RPSQPRDPNIFR-NCLFNNNNIISKS----SNSFITISLFQIMESIYLSLENTIISNNTI 344

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 2,504,140,394
Number of extensions: 51725307
Number of successful extensions: 136705
Number of sequences better than 10.0: 99
Number of HSP's gapped: 136554
Number of HSP's successfully gapped: 105
Length of query: 521
Length of database: 1,040,966,779
Length adjustment: 133
Effective length of query: 388
Effective length of database: 614,796,874
Effective search space: 238541187112
Effective search space used: 238541187112
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.15  gvh: 0.48  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.16  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall

>> prediction for Contig-U09099-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 5
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 2
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 2
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0