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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U09061-1
Contig ID Contig-U09061-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U09061-1 (Contig-U09061-1Q) /CSM_Contig/Contig-U09061-1Q.Seq.d
ACTGTTGGCCTACGGNATTATTATTAATAATTAAAAACCATTAAAATGAT
TAAAAAGGTAAAATTGTTTTTATTAGTATTAGTATTATTTAATTTTTGTG
TTTCACCATCATTATCATCATCATCAAGTGAATGCCATCAAAAGATTTTT
AGCGTTTCAGAAGTTAACCCATACAATATTAATAGTTTAGTTGTTATTCA
AGGTATTTTTTGTTTAAATAGTACAGAAGGAATTAAAGTTTCACTCAATG
TACCAGAAGAAGGATCAAATATTTCATATGGATTAGATTGTGATGATAGT
TTAACAATTGATTCAATTGGTGAAACCATTACATGTAGATTATCAGATAA
TTATAGTGGTAAAAATGCAGTAAACTTTACAACATTGGCAATTGTAATGG
TTTATACACCAATTCCAGTACCAACACCAACACCATCACCAACACCATCA
CCATCACCACCATCAAAAATTGGTGTTGGTCCAGTACCAGTATTAGGAAC
TAGTAAATATATATTCACAAACAGTAGTTGTCCAAGTGGTTGTTCAGAAA
ATGGTTTCTGTGATGTTGGAAATACATGTAGATGTAACCAAAACCAAGCA
TCATTTGATTGTAGTGTCAGAGTTTATAACCAAACTTCATTACCATCACC
AATAGTCCAAGCATTTAACACATTTTCAATGAGTTCATCAAATGAGCAAT
TCAGTGTTGTTCTATCACATATCATTGCAAATCCTGCTGGTTC-------
---NNNNNNNNNNCATATTTACCATTATCATCCTCTGCTGCCACAATTAC
AATTAATCCCACTATAGACCCACAATATTTGCCATCGGGTTTTTCACATT
ATCATGGTTTTGGTGAATTTTATATGATATTTGAAATTTCGAATAAACAT
CTCACAATGAGTAAATATTTGAGTGCTACACCATTTATTGCAAGAAGTGT
TACATTGTGGAGTGAAGAAAATGTAAATTCGATGATGGAAATTAGTTTAT
CCGATATTTATAGTTTTGATGGATCAACTGTACCTGAACATGCTTATCTT
AATGTATTCAATTCATTTGATTATCAATTTATAAAAAACTATTCAAATAG
TTCTTTATATGTTGCTATTATCATTCCACAAACGTCATCCTATAATCCAA
TTCCAATGGGTACATATACAATTCAATTAAATATCAATGTCTATGATATT
CGTTTATCAATTTCAAAAGGTAGATTCCCACCTTGGTTTATCGCTTTAAT
TGTCATCATTCCATCAATCATTGGAATAGCTATCATAGCAATAATTATTA
AATGTGTTTTATCAAAACGTAATAGTTATTCAAGAATAGGAGATCACCCT
CTTCACCATTAGTGATCACTAAATAAAAAAGTAATAATTTATTTTTTTAA
ATTTTGTTTTCTTTTTTTTAAAAGAGNATAAAAAATAAAAAAATAAAA
Gap gap included
Contig length 1438
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 5038016
End point 5039434
Strand (PLUS/MINUS) PLUS
Number of clones 4
Number of EST 5
Link to clone list U09061
List of clone(s) 

est1=SFH669F,1,607
est2=VFJ332F,10,521
est3=VFL256F,13,687
est4=VFJ458F,125,731
est5=SFH669Z,744,1429
Translated Amino Acid sequence 
tvglrxyy**LKTIKMIKKVKLFLLVLVLFNFCVSPSLSSSSSECHQKIFSVSEVNPYNI
NSLVVIQGIFCLNSTEGIKVSLNVPEEGSNISYGLDCDDSLTIDSIGETITCRLSDNYSG
KNAVNFTTLAIVMVYTPIPVPTPTPSPTPSPSPPSKIGVGPVPVLGTSKYIFTNSSCPSG
CSENGFCDVGNTCRCNQNQASFDCSVRVYNQTSLPSPIVQAFNTFSMSSSNEQFSVVLSH
IIANPAG---

---XXXXYLPLSSSAATITINPTIDPQYLPSGFSHYHGFGEFYMIFEISNKHLTMSKYLS
ATPFIARSVTLWSEENVNSMMEISLSDIYSFDGSTVPEHAYLNVFNSFDYQFIKNYSNSS
LYVAIIIPQTSSYNPIPMGTYTIQLNINVYDIRLSISKGRFPPWFIALIVIIPSIIGIAI
IAIIIKCVLSKRNSYSRIGDHPLHH**slnkkviiyffkfcflffkrx*kikk*
Translated Amino Acid sequence (All Frames) 
Frame A:
tvglrxyy**LKTIKMIKKVKLFLLVLVLFNFCVSPSLSSSSSECHQKIFSVSEVNPYNI
NSLVVIQGIFCLNSTEGIKVSLNVPEEGSNISYGLDCDDSLTIDSIGETITCRLSDNYSG
KNAVNFTTLAIVMVYTPIPVPTPTPSPTPSPSPPSKIGVGPVPVLGTSKYIFTNSSCPSG
CSENGFCDVGNTCRCNQNQASFDCSVRVYNQTSLPSPIVQAFNTFSMSSSNEQFSVVLSH
IIANPAG---

---XXXXYLPLSSSAATITINPTIDPQYLPSGFSHYHGFGEFYMIFEISNKHLTMSKYLS
ATPFIARSVTLWSEENVNSMMEISLSDIYSFDGSTVPEHAYLNVFNSFDYQFIKNYSNSS
LYVAIIIPQTSSYNPIPMGTYTIQLNINVYDIRLSISKGRFPPWFIALIVIIPSIIGIAI
IAIIIKCVLSKRNSYSRIGDHPLHH**slnkkviiyffkfcflffkrx*kikk*

Frame B:
llaygiiinn*kplk*lkr*ncfy*y*yylifvfhhhyhhhqvnaikrflafqklthtil
iv*llfkvffv*ivqkelkfhsmyqkkdqifhmd*ivmiv*qliqlvkplhvdyqiiivv
kmq*tlqhwql*wfihqfqyqhqhhhqhhhhhhhqklvlvqyqy*elvniysqtvvvqvv
vqkmvsvmleihvdvtktkhhlivvsefitklhyhhq*skhlthfq*vhqmsnsvlfyhi
slqillv---

---xxxhiyhyhpllpqlqlipl*thnichrvfhiimvlvnfi*ylkfrinisq*vni*v
lhhllqevlhcgvkkm*ir*wklvypifivlmdqlylnmlilmysihliinl*ktiqivl
ymlllsfhkrhpiiqfqwvhiqfn*ismsmifvyqfqkvdshlglsl*lssfhqsle*ls
*q*llnvfyqnviviqe*eitlftisdh*ikk**fiflnfvffflkexkk*knk

Frame C:
cwptxllliiknh*nd*kgkivfisisii*flcftiiiiiik*mpskdf*rfrs*piqy*
*fscysryflfk*yrrn*sftqctrrrikyfiwirl***fnn*fnw*nhym*iir*l*w*
kcsklynigncnglytnsstntntitntitittiknwcwsstsirn**iyihkq*lskwl
frkwfl*cwkym*m*pkpsii*l*cqsl*pnfititnspsi*hifnefik*aiqccsity
hckscwf---

---xxxiftiiilcchnyn*shyrptifaigfftlswfw*ilydi*nfe*tshne*ifec
ytiyckkcyive*rkckfddgn*firyl*f*winct*tcls*ciqfi*lsiykklfk*ff
iccyyhstnvil*snsngyiynsikyqcl*ysfinfkr*iptlvyrfnchhsinhwnsyh
snny*mcfikt**lfknrrspssplvitk*ksnnlff*ilfsff*kxiknkkik
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U09061-1 (Contig-U09061-1Q)
/CSM_Contig/Contig-U09061-1Q.Seq.d
         (1448 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09061-1 (Contig-U09061-1Q) /CSM_Contig/Conti...  1237  0.0
Contig-U10621-1 (Contig-U10621-1Q) /CSM_Contig/Conti...    60  7e-09
Contig-U12160-1 (Contig-U12160-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U03571-1 (Contig-U03571-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U11980-1 (Contig-U11980-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U11680-1 (Contig-U11680-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U08922-1 (Contig-U08922-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U00247-1 (Contig-U00247-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U13880-1 (Contig-U13880-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U13408-1 (Contig-U13408-1Q) /CSM_Contig/Conti...    40  0.007

>Contig-U09061-1 (Contig-U09061-1Q) /CSM_Contig/Contig-U09061-1Q.Seq.d
          Length = 1448

 Score = 1237 bits (624), Expect = 0.0
 Identities = 624/624 (100%)
 Strand = Plus / Plus

                                                                        
Query: 764  catatttaccattatcatcctctgctgccacaattacaattaatcccactatagacccac 823
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764  catatttaccattatcatcctctgctgccacaattacaattaatcccactatagacccac 823

                                                                        
Query: 824  aatatttgccatcgggtttttcacattatcatggttttggtgaattttatatgatatttg 883
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824  aatatttgccatcgggtttttcacattatcatggttttggtgaattttatatgatatttg 883

                                                                        
Query: 884  aaatttcgaataaacatctcacaatgagtaaatatttgagtgctacaccatttattgcaa 943
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884  aaatttcgaataaacatctcacaatgagtaaatatttgagtgctacaccatttattgcaa 943

                                                                        
Query: 944  gaagtgttacattgtggagtgaagaaaatgtaaattcgatgatggaaattagtttatccg 1003
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944  gaagtgttacattgtggagtgaagaaaatgtaaattcgatgatggaaattagtttatccg 1003

                                                                        
Query: 1004 atatttatagttttgatggatcaactgtacctgaacatgcttatcttaatgtattcaatt 1063
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 atatttatagttttgatggatcaactgtacctgaacatgcttatcttaatgtattcaatt 1063

                                                                        
Query: 1064 catttgattatcaatttataaaaaactattcaaatagttctttatatgttgctattatca 1123
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1064 catttgattatcaatttataaaaaactattcaaatagttctttatatgttgctattatca 1123

                                                                        
Query: 1124 ttccacaaacgtcatcctataatccaattccaatgggtacatatacaattcaattaaata 1183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1124 ttccacaaacgtcatcctataatccaattccaatgggtacatatacaattcaattaaata 1183

                                                                        
Query: 1184 tcaatgtctatgatattcgtttatcaatttcaaaaggtagattcccaccttggtttatcg 1243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1184 tcaatgtctatgatattcgtttatcaatttcaaaaggtagattcccaccttggtttatcg 1243

                                                                        
Query: 1244 ctttaattgtcatcattccatcaatcattggaatagctatcatagcaataattattaaat 1303
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1244 ctttaattgtcatcattccatcaatcattggaatagctatcatagcaataattattaaat 1303

                                                                        
Query: 1304 gtgttttatcaaaacgtaatagttattcaagaataggagatcaccctcttcaccattagt 1363
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1304 gtgttttatcaaaacgtaatagttattcaagaataggagatcaccctcttcaccattagt 1363

                                    
Query: 1364 gatcactaaataaaaaagtaataa 1387
            ||||||||||||||||||||||||
Sbjct: 1364 gatcactaaataaaaaagtaataa 1387


 Score =  640 bits (323), Expect = 0.0
 Identities = 323/323 (100%)
 Strand = Plus / Plus

                                                                       
Query: 97  tgtgtttcaccatcattatcatcatcatcaagtgaatgccatcaaaagatttttagcgtt 156
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  tgtgtttcaccatcattatcatcatcatcaagtgaatgccatcaaaagatttttagcgtt 156

                                                                       
Query: 157 tcagaagttaacccatacaatattaatagtttagttgttattcaaggtattttttgttta 216
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 tcagaagttaacccatacaatattaatagtttagttgttattcaaggtattttttgttta 216

                                                                       
Query: 217 aatagtacagaaggaattaaagtttcactcaatgtaccagaagaaggatcaaatatttca 276
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 aatagtacagaaggaattaaagtttcactcaatgtaccagaagaaggatcaaatatttca 276

                                                                       
Query: 277 tatggattagattgtgatgatagtttaacaattgattcaattggtgaaaccattacatgt 336
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tatggattagattgtgatgatagtttaacaattgattcaattggtgaaaccattacatgt 336

                                                                       
Query: 337 agattatcagataattatagtggtaaaaatgcagtaaactttacaacattggcaattgta 396
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 agattatcagataattatagtggtaaaaatgcagtaaactttacaacattggcaattgta 396

                                  
Query: 397 atggtttatacaccaattccagt 419
           |||||||||||||||||||||||
Sbjct: 397 atggtttatacaccaattccagt 419


 Score =  553 bits (279), Expect = e-157
 Identities = 279/279 (100%)
 Strand = Plus / Plus

                                                                       
Query: 465 aaaaattggtgttggtccagtaccagtattaggaactagtaaatatatattcacaaacag 524
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 aaaaattggtgttggtccagtaccagtattaggaactagtaaatatatattcacaaacag 524

                                                                       
Query: 525 tagttgtccaagtggttgttcagaaaatggtttctgtgatgttggaaatacatgtagatg 584
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tagttgtccaagtggttgttcagaaaatggtttctgtgatgttggaaatacatgtagatg 584

                                                                       
Query: 585 taaccaaaaccaagcatcatttgattgtagtgtcagagtttataaccaaacttcattacc 644
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 taaccaaaaccaagcatcatttgattgtagtgtcagagtttataaccaaacttcattacc 644

                                                                       
Query: 645 atcaccaatagtccaagcatttaacacattttcaatgagttcatcaaatgagcaattcag 704
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 atcaccaatagtccaagcatttaacacattttcaatgagttcatcaaatgagcaattcag 704

                                                  
Query: 705 tgttgttctatcacatatcattgcaaatcctgctggttc 743
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 705 tgttgttctatcacatatcattgcaaatcctgctggttc 743


 Score = 30.2 bits (15), Expect = 6.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                         
Query: 1  actgttggcctacgg 15
          |||||||||||||||
Sbjct: 1  actgttggcctacgg 15


>Contig-U10621-1 (Contig-U10621-1Q) /CSM_Contig/Contig-U10621-1Q.Seq.d
          Length = 728

 Score = 60.0 bits (30), Expect = 7e-09
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                  
Query: 1163 catatacaattcaattaaatatcaatgtctatgatatt 1200
            |||||||||||||||| ||||||||||| |||||||||
Sbjct: 512  catatacaattcaattgaatatcaatgtttatgatatt 549


 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 766 tatttaccattatcatcctctgctgccacaattac 800
           ||||||||||||||||| || || |||||||||||
Sbjct: 121 tatttaccattatcatcatcagcagccacaattac 155


 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 991  attagtttatccgatatttatagttttgat 1020
            ||||||||||| ||||| ||||||||||||
Sbjct: 346  attagtttatctgatatctatagttttgat 375


 Score = 36.2 bits (18), Expect = 0.10
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                      
Query: 1313 caaaacgtaatagttattcaagaata 1338
            |||||||| ||| |||||||||||||
Sbjct: 659  caaaacgtcataattattcaagaata 684


>Contig-U12160-1 (Contig-U12160-1Q) /CSM_Contig/Contig-U12160-1Q.Seq.d
          Length = 2311

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 104  caccatcattatcatcatcatca 126
            |||||||||||||||||||||||
Sbjct: 1623 caccatcattatcatcatcatca 1645


 Score = 38.2 bits (19), Expect = 0.026
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 104 caccatcattatcatcatcatca 126
           ||||||||| |||||||||||||
Sbjct: 150 caccatcatcatcatcatcatca 172


 Score = 32.2 bits (16), Expect = 1.6
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 107 catcattatcatcatcatca 126
           |||||| |||||||||||||
Sbjct: 159 catcatcatcatcatcatca 178


 Score = 32.2 bits (16), Expect = 1.6
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 107 catcattatcatcatcatca 126
           |||||| |||||||||||||
Sbjct: 162 catcatcatcatcatcatca 181


 Score = 32.2 bits (16), Expect = 1.6
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 107 catcattatcatcatcatca 126
           |||||| |||||||||||||
Sbjct: 180 catcatcatcatcatcatca 199


 Score = 32.2 bits (16), Expect = 1.6
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 107 catcattatcatcatcatca 126
           |||||| |||||||||||||
Sbjct: 174 catcatcatcatcatcatca 193


 Score = 32.2 bits (16), Expect = 1.6
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 107 catcattatcatcatcatca 126
           |||||| |||||||||||||
Sbjct: 186 catcatcatcatcatcatca 205


 Score = 32.2 bits (16), Expect = 1.6
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 107 catcattatcatcatcatca 126
           |||||| |||||||||||||
Sbjct: 156 catcatcatcatcatcatca 175


 Score = 32.2 bits (16), Expect = 1.6
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 107 catcattatcatcatcatca 126
           |||||| |||||||||||||
Sbjct: 183 catcatcatcatcatcatca 202


 Score = 32.2 bits (16), Expect = 1.6
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 107 catcattatcatcatcatca 126
           |||||| |||||||||||||
Sbjct: 189 catcatcatcatcatcatca 208


 Score = 32.2 bits (16), Expect = 1.6
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 107 catcattatcatcatcatca 126
           |||||| |||||||||||||
Sbjct: 168 catcatcatcatcatcatca 187


 Score = 32.2 bits (16), Expect = 1.6
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 107 catcattatcatcatcatca 126
           |||||| |||||||||||||
Sbjct: 171 catcatcatcatcatcatca 190


 Score = 32.2 bits (16), Expect = 1.6
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 107 catcattatcatcatcatca 126
           |||||| |||||||||||||
Sbjct: 192 catcatcatcatcatcatca 211


 Score = 32.2 bits (16), Expect = 1.6
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 107 catcattatcatcatcatca 126
           |||||| |||||||||||||
Sbjct: 177 catcatcatcatcatcatca 196


 Score = 32.2 bits (16), Expect = 1.6
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 107 catcattatcatcatcatca 126
           |||||| |||||||||||||
Sbjct: 165 catcatcatcatcatcatca 184


 Score = 30.2 bits (15), Expect = 6.3
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                              
Query: 107 catcattatcatcatcatc 125
           |||||| ||||||||||||
Sbjct: 195 catcatcatcatcatcatc 213


 Score = 30.2 bits (15), Expect = 6.3
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                  
Query: 104 caccatcattatcatcatcatca 126
           ||||| ||| |||||||||||||
Sbjct: 147 caccaccatcatcatcatcatca 169


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,280
Number of Sequences: 6905
Number of extensions: 21280
Number of successful extensions: 3650
Number of sequences better than 10.0: 453
length of query: 1448
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1432
effective length of database: 5,564,391
effective search space: 7968207912
effective search space used: 7968207912
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.14
Homology vs DNA 
Query= Contig-U09061-1 (Contig-U09061-1Q) /CSM_Contig/Contig-U09061-1Q.Seq.d
         (1448 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ402378) Dictyostelium discoideum cDNA clone:dds16i18, 3' ...  1237   0.0    1
(BJ414540) Dictyostelium discoideum cDNA clone:ddv19d16, 5' ...   557   0.0    2
(BJ415777) Dictyostelium discoideum cDNA clone:ddv23o14, 5' ...   579   0.0    2
(BJ414524) Dictyostelium discoideum cDNA clone:ddv19p07, 5' ...   579   0.0    2
(BJ388875) Dictyostelium discoideum cDNA clone:dds16i18, 5' ...    88   5e-69  7
(BJ432694) Dictyostelium discoideum cDNA clone:ddv19p07, 3' ...    60   1e-22  5
(BJ434032) Dictyostelium discoideum cDNA clone:ddv23o14, 3' ...    60   3e-21  5
(BJ432717) Dictyostelium discoideum cDNA clone:ddv19d16, 3' ...    60   5e-21  5
(AU266675) Dictyostelium discoideum vegetative cDNA clone:VS...    60   8e-17  4
(AC005688) Homo sapiens clone UWGC:g1564a134 from 7p14-15, c...    54   0.015  1
(BQ835059) Po_ad_06G01_TEXF1 Psoroptes ovis mixed Psoroptes ...    40   0.040  3
(AC177959) Strongylocentrotus purpuratus clone R3-3049E7, WO...    48   0.048  6
(EI689849) SB_BBd03-I03.F SB_BBd Sorghum bicolor genomic 5',...    52   0.060  1
(BH766553) BMBAC342C10SP6_PSU Brugia malayi Genomic Bac Libr...    52   0.060  1
(BJ863016) Marchantia polymorpha cDNA clone:lwb26d11, 5' end.      52   0.060  1
(BJ854833) Marchantia polymorpha cDNA clone:lwa46d04, 5' end.      52   0.060  1
(BJ854472) Marchantia polymorpha cDNA clone:lwa45d04, 5' end.      52   0.060  1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    32   0.067  16
(AY965273) Synthetic construct clone VACV-WR_049 unknown gene.     36   0.17   3
(BV482201) rqy92a03.b1 Clint Pan troglodytes verus STS genom...    50   0.24   1
(BV478393) G591P53764RC7.T0 Clint Pan troglodytes verus STS ...    50   0.24   1
(AP000662) Homo sapiens genomic DNA, chromosome 11q, clone:C...    50   0.24   1
(AC092832) Homo sapiens X BAC RP11-494I9 (Roswell Park Cance...    50   0.24   1
(AC121002) Rattus norvegicus clone CH230-152E20, WORKING DRA...    50   0.24   1
(AC095075) Rattus norvegicus clone CH230-7B4, *** SEQUENCING...    50   0.24   1
(AC092707) Homo sapiens chromosome 11 clone RP11-679G21 map ...    50   0.24   1
(AC090218) Homo sapiens chromosome 11 clone RP11-691N7 map 1...    50   0.24   1
(AC031985) Homo sapiens chromosome 6 clone RP11-145I22 map 6...    50   0.24   1
(AC026293) Homo sapiens chromosome 11 clone RP11-684M15, WOR...    50   0.24   1
(AP001082) Homo sapiens genomic DNA, chromosome 11q12 clone:...    50   0.24   1
(AP000727) Homo sapiens genomic DNA, chromosome 11q12 clone:...    50   0.24   1
(AC179675) Strongylocentrotus purpuratus clone R3-1021O8, WO...    50   0.24   1
(AC177566) Strongylocentrotus purpuratus clone R3-1026E11, W...    50   0.24   1
(AC177366) Strongylocentrotus purpuratus clone R3-52I12, WOR...    50   0.24   1
(AC176306) Strongylocentrotus purpuratus clone R3-3057A8, WO...    50   0.24   1
(AC168599) Strongylocentrotus purpuratus clone R3-3046N23, W...    50   0.24   1
(AC168448) Strongylocentrotus purpuratus clone R3-39A6, WORK...    50   0.24   1
(AC021522) Homo sapiens clone RP11-335H5, WORKING DRAFT SEQU...    50   0.24   1
(AC009438) Homo sapiens chromosome 11 clone RP11-77M17 map 1...    50   0.24   1
(AQ412209) RPCI-11-199J18.TJ RPCI-11 Homo sapiens genomic cl...    50   0.24   1
(DH300993) Oryzias latipes Fosmid clone:GOLWFno649_i04, forw...    50   0.24   1
(EL407756) CFFS5543.b1_N17.ab1 CFF(LMS) safflower Carthamus ...    50   0.24   1
(EY314821) CAWX25716.fwd CAWX Helobdella robusta Primary Ear...    50   0.24   1
(AG185830) Pan troglodytes DNA, clone: RP43-060A15.T7.             44   0.27   2
(AC193037) Pan troglodytes BAC clone CH251-547M4 from chromo...    48   0.38   4
(AC178719) Strongylocentrotus purpuratus clone R3-3003A9, WO...    42   0.42   7
(AM426746) Vitis vinifera contig VV78X267462.3, whole genome...    34   0.53   2
(AE014306) Homo sapiens chromosome 13q34 schizophrenia regio...    40   0.56   5
(AC181740) Strongylocentrotus purpuratus clone R3-1037J17, W...    40   0.58   9
(AC179525) Strongylocentrotus purpuratus clone R3-6D4, WORKI...    42   0.64   4
(AL583962) Human DNA sequence from clone LA20-VLA2066F10L on...    40   0.67   3
(AC201648) Strongylocentrotus purpuratus clone R3-15K1, WORK...    46   0.72   5
(AC176608) Strongylocentrotus purpuratus clone R3-3079G22, W...    48   0.73   3
(AL589745) Human DNA sequence from clone RP11-478K15 on chro...    48   0.81   2
(AC184415) Strongylocentrotus purpuratus clone R3-3113C18, W...    48   0.84   6
(CR760205) Xenopus tropicalis finished cDNA, clone TNeu057e08.     48   0.94   1
(CR382374) Zebrafish DNA sequence from clone DKEY-151E22 in ...    48   0.94   1
(CR382364) Zebrafish DNA sequence from clone CH211-198E11 in...    48   0.94   1
(CR318664) Zebrafish DNA sequence from clone CH211-59L22 in ...    48   0.94   1
(BX539346) Zebrafish DNA sequence from clone DKEYP-73G7 in l...    48   0.94   1
(BC161483) Xenopus tropicalis RIO kinase 2, mRNA (cDNA clone...    48   0.94   1
(BV613342) S215P6344FH6.T0 Clara Pan troglodytes troglodytes...    48   0.94   1
(BV581988) G591P619200RB7.T0 Clint Pan troglodytes verus STS...    48   0.94   1
(AC161606) Mus musculus BAC clone RP23-232M18 from chromosom...    48   0.94   1
(AC129553) Mus musculus chromosome 5, clone RP24-351J24, com...    48   0.94   1
(AC122888) Mus musculus BAC clone RP23-93F11 from chromosome...    48   0.94   1
(AC116952) Mus musculus BAC clone RP23-104A7 from 14, comple...    48   0.94   1
(AC108909) Mus musculus chromosome 3, clone RP24-245I16, com...    48   0.94   1
(AC190200) Pan troglodytes BAC clone CH251-616L15 from chrom...    48   0.94   1
(EF453223) Strongylocentrotus franciscanus Spec1b region, ge...    48   0.94   1
(EF106761) Asterinidae mixed genomic library microsatellite ...    48   0.94   1
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7...    48   0.94   1
(Z97192) Human DNA sequence from clone RP1-29C18 on chromoso...    48   0.94   1
(AL162379) Human DNA sequence from clone RP11-426K7 on chrom...    48   0.94   1
(AL138711) Human DNA sequence from clone RP11-495J3 on chrom...    48   0.94   1
(AL096821) Human chromosome 14 DNA sequence BAC R-677J5 of l...    48   0.94   1
(AL035250) Human DNA sequence from clone RP4-614C15 on chrom...    48   0.94   1
(AC093519) Homo sapiens chromosome 16 clone RP11-107C10, com...    48   0.94   1
(AC084361) Homo sapiens 12 BAC RP11-364C11 (Roswell Park Can...    48   0.94   1
(AC018931) Homo sapiens chromosome 18, clone RP11-418K9, com...    48   0.94   1
(AC008660) Homo sapiens chromosome 5 clone CTB-27N1, complet...    48   0.94   1
(AC004631) Homo sapiens chromosome 5, PAC clone 154d1 (LBNL ...    48   0.94   1
(AC161610) Mus musculus chromosome 14 clone RP23-102D6, WORK...    48   0.94   1
(AC157962) Strongylocentrotus purpuratus clone R3-4002F18, W...    48   0.94   1
(AC149846) Papio anubis clone RP41-153B23, WORKING DRAFT SEQ...    48   0.94   1
(AC149567) Papio anubis clone RP41-462A8, WORKING DRAFT SEQU...    48   0.94   1
(AC147307) Pan troglodytes chromosome UNK clone RP43-54G2, *...    48   0.94   1
(AC133266) Rattus norvegicus clone CH230-270O9, WORKING DRAF...    48   0.94   1
(AC129701) Rattus norvegicus clone CH230-10D9, WORKING DRAFT...    48   0.94   1
(AC126654) Rattus norvegicus clone CH230-64I10, *** SEQUENCI...    48   0.94   1
(AC121446) Rattus norvegicus clone CH230-116M21, *** SEQUENC...    48   0.94   1
(AC106399) Rattus norvegicus clone CH230-138A5, *** SEQUENCI...    48   0.94   1
(AC106211) Rattus norvegicus clone CH230-42G9, WORKING DRAFT...    48   0.94   1
(AC103227) Rattus norvegicus clone CH230-177H5, WORKING DRAF...    48   0.94   1
(AC099116) Rattus norvegicus clone CH230-170L23, *** SEQUENC...    48   0.94   1
(AC098772) Rattus norvegicus clone CH230-68O5, *** SEQUENCIN...    48   0.94   1
(CU914514) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.94   1
(CU655937) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.94   1
(AC073376) Homo sapiens clone RP11-173C19, WORKING DRAFT SEQ...    48   0.94   1
(AC058805) Homo sapiens chromosome 20 clone RP11-794I14 map ...    48   0.94   1

>(BJ402378) Dictyostelium discoideum cDNA clone:dds16i18, 3' end,
            single read.
          Length = 686

 Score = 1237 bits (624), Expect = 0.0
 Identities = 624/624 (100%)
 Strand = Plus / Minus


Query: 764  catatttaccattatcatcctctgctgccacaattacaattaatcccactatagacccac 823
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686  catatttaccattatcatcctctgctgccacaattacaattaatcccactatagacccac 627


Query: 824  aatatttgccatcgggtttttcacattatcatggttttggtgaattttatatgatatttg 883
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626  aatatttgccatcgggtttttcacattatcatggttttggtgaattttatatgatatttg 567


Query: 884  aaatttcgaataaacatctcacaatgagtaaatatttgagtgctacaccatttattgcaa 943
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566  aaatttcgaataaacatctcacaatgagtaaatatttgagtgctacaccatttattgcaa 507


Query: 944  gaagtgttacattgtggagtgaagaaaatgtaaattcgatgatggaaattagtttatccg 1003
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506  gaagtgttacattgtggagtgaagaaaatgtaaattcgatgatggaaattagtttatccg 447


Query: 1004 atatttatagttttgatggatcaactgtacctgaacatgcttatcttaatgtattcaatt 1063
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446  atatttatagttttgatggatcaactgtacctgaacatgcttatcttaatgtattcaatt 387


Query: 1064 catttgattatcaatttataaaaaactattcaaatagttctttatatgttgctattatca 1123
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386  catttgattatcaatttataaaaaactattcaaatagttctttatatgttgctattatca 327


Query: 1124 ttccacaaacgtcatcctataatccaattccaatgggtacatatacaattcaattaaata 1183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326  ttccacaaacgtcatcctataatccaattccaatgggtacatatacaattcaattaaata 267


Query: 1184 tcaatgtctatgatattcgtttatcaatttcaaaaggtagattcccaccttggtttatcg 1243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266  tcaatgtctatgatattcgtttatcaatttcaaaaggtagattcccaccttggtttatcg 207


Query: 1244 ctttaattgtcatcattccatcaatcattggaatagctatcatagcaataattattaaat 1303
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206  ctttaattgtcatcattccatcaatcattggaatagctatcatagcaataattattaaat 147


Query: 1304 gtgttttatcaaaacgtaatagttattcaagaataggagatcaccctcttcaccattagt 1363
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146  gtgttttatcaaaacgtaatagttattcaagaataggagatcaccctcttcaccattagt 87


Query: 1364 gatcactaaataaaaaagtaataa 1387
            ||||||||||||||||||||||||
Sbjct: 86   gatcactaaataaaaaagtaataa 63

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,479,344,126
Number of extensions: 90011789
Number of successful extensions: 8115728
Number of sequences better than 10.0: 444
Length of query: 1448
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1424
Effective length of database: 97,308,875,965
Effective search space: 138567839374160
Effective search space used: 138567839374160
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.25
Homology vs Protein 
Query= Contig-U09061-1 (Contig-U09061-1Q) /CSM_Contig/Contig-U09061-1Q.Seq.d
         (1448 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072425_1(AB072425|pid:none) Oryzias latipes Reln mRNA for reel...    45   0.007
AC116960_61(AC116960|pid:none) Dictyostelium discoideum chromoso...    43   0.033
AF090951_1(AF090951|pid:none) Lacerta viridis reelin (reln) mRNA...    43   0.033
AC096673_18(AC096673|pid:none) Trypanosoma brucei chromosome 3 c...    42   0.056
S58870(S58870;S71844;I49297)reelin precursor - mouse                   42   0.073
AK297459_1(AK297459|pid:none) Homo sapiens cDNA FLJ51503 complet...    42   0.073
AK017094_1(AK017094|pid:none) Mus musculus adult male testis cDN...    42   0.073
(P78509) RecName: Full=Reelin;          EC=3.4.21.-; Flags: Prec...    42   0.073
AY650356_1(AY650356|pid:none) Macaca fascicularis reelin mRNA, p...    42   0.073
D63520_1(D63520|pid:none) Mouse reeler mRNA, complete cds.             42   0.073
(Q60841) RecName: Full=Reelin;          EC=3.4.21.-; AltName: Fu...    42   0.073
AK293863_1(AK293863|pid:none) Homo sapiens cDNA FLJ51504 complet...    42   0.073
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso...    41   0.095
AB062680_1(AB062680|pid:none) Rattus norvegicus Reln mRNA for re...    41   0.095
AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso...    40   0.16
AY704216_1(AY704216|pid:none) Mus musculus reelin (Reln) mRNA, p...    40   0.21
AY568568_1(AY568568|pid:none) Bos taurus reelin (RELN) mRNA, par...    40   0.28
AC116982_41(AC116982|pid:none) Dictyostelium discoideum chromoso...    39   0.47
AL049547_2(AL049547|pid:none) Human DNA sequence from clone RP1-...    39   0.47
AE006641_342(AE006641|pid:none) Sulfolobus solfataricus P2, comp...    38   1.1
(Q9UMG7) RecName: Full=Tenascin-X;          Short=TN-X; AltName:...    37   1.4
DQ789370_2(DQ789370|pid:none) Panthera leo gammaherpesvirus 1 gl...    37   1.4
AB010266_2(AB010266|pid:none) Mus musculus Creb-rp, Tnx, Cyp21 g...    37   1.4
AL645922_24(AL645922|pid:none) Human DNA sequence from clone XXb...    37   1.4
AL034556_5(AL034556|pid:none) Plasmodium falciparum MAL3P5, comp...    37   1.4
X71923_1(X71923|pid:none) H.sapiens XB gene for tenascin-X, exon...    37   1.4
AC115605_7(AC115605|pid:none) Dictyostelium discoideum chromosom...    37   1.8
AF008227_1(AF008227|pid:none) Drosophila melanogaster odd Oz pro...    37   2.3
AE014296_3877(AE014296|pid:none) Drosophila melanogaster chromos...    37   2.3
A54148(A54148)odz protein - fruit fly (Drosophila sp.)                 37   2.3
AE014296_3878(AE014296|pid:none) Drosophila melanogaster chromos...    37   2.3
AC116920_20(AC116920|pid:none) Dictyostelium discoideum chromoso...    36   3.1
AM231718_1(AM231718|pid:none) Gallus gallus mRNA for tenascin-W ...    36   3.1
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso...    36   4.0
AJ580920_1(AJ580920|pid:none) Mus musculus mRNA for tenascin-W p...    36   4.0
AM920437_1267(AM920437|pid:none) Penicillium chrysogenum Wiscons...    36   4.0
AL773560_5(AL773560|pid:none) Pig DNA sequence from clone PigI-5...    36   4.0
(Q80Z71) RecName: Full=Tenascin-N;          Short=TN-N; Flags: P...    36   4.0
AC116920_25(AC116920|pid:none) Dictyostelium discoideum chromoso...    36   4.0
BC138335_1(BC138335|pid:none) Mus musculus tenascin N, mRNA (cDN...    36   4.0
AC117075_42(AC117075|pid:none) Dictyostelium discoideum chromoso...    35   5.2
AE014134_2530(AE014134|pid:none) Drosophila melanogaster chromos...    35   5.2
AK176188_1(AK176188|pid:none) Arabidopsis thaliana mRNA for majo...    35   5.2
(P41951) RecName: Full=Prion-like-(Q/N-rich) domain-bearing prot...    35   5.2
AC103550_20(AC103550|pid:none) Oryza sativa chromosome 3 BAC OSJ...    35   5.2
AM463622_2(AM463622|pid:none) Vitis vinifera contig VV78X244153....    35   6.8
BC144305_1(BC144305|pid:none) Homo sapiens cDNA clone MGC:177842...    35   6.8
AK127044_1(AK127044|pid:none) Homo sapiens cDNA FLJ45101 fis, cl...    35   6.8
AL049689_1(AL049689|pid:none) Novel human mRNA from chromosome 1...    35   6.8
(Q9UQP3) RecName: Full=Tenascin-N;          Short=TN-N; Flags: P...    35   6.8
CP001403_1803(CP001403|pid:none) Sulfolobus islandicus Y.G.57.14...    35   8.9

>AB072425_1(AB072425|pid:none) Oryzias latipes Reln mRNA for reelin,
           partial cds.
          Length = 291

 Score = 45.1 bits (105), Expect = 0.007
 Identities = 21/64 (32%), Positives = 34/64 (53%)
 Frame = +1

Query: 508 YIFTNSSCPSGCSENGFCDVGNTCRCNQNQASFDCSVRVYNQTSLPSPIVQAFNTFSMSS 687
           +++   +CP  CS +G+C  G  C C++     DCS+   + T LPS I   F + S+S
Sbjct: 95  HVYIGEACPGLCSGHGYCTTGLVCICDEGYHGDDCSL---SGTDLPSSIKDNFESSSVSQ 151

Query: 688 SNEQ 699
            + Q
Sbjct: 152 ESWQ 155

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,924,453,305
Number of extensions: 36899392
Number of successful extensions: 84700
Number of sequences better than 10.0: 51
Number of HSP's gapped: 84627
Number of HSP's successfully gapped: 63
Length of query: 482
Length of database: 1,040,966,779
Length adjustment: 132
Effective length of query: 350
Effective length of database: 618,001,159
Effective search space: 216300405650
Effective search space used: 216300405650
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 1.00  gvh: 0.73  alm: 0.10  top: 0.10  tms: 0.07  mit: 0.37  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.25  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: extracellular, including cell wall
	 32.0 %: plasma membrane
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi
	  4.0 %: nuclear

>> prediction for Contig-U09061-1 is exc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 3
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0