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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01531-1
Contig ID Contig-U01531-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01531-1 (Contig-U01531-1Q) /CSM_Contig/Contig-U01531-1Q.Seq.d
AAAAATGTTTAATAAAATAATTTTATTGTTTATATTTTTTCAAATTTTAA
CAATTCAAATAAAATTAATTCATTCATATGAAATTAGATATTTTGTATTT
AGTGATTCAAGAATGTAATTCAACAAATATTAAAATAATGATCAGTGCTA
CAAAATGTTCAGATTTTGGATTGGTTCAAATTATTAATAATAATAAAATC
ATAATTAATAATAATATTAATTCAATAAATGATTGTTTATCTCCTTCTTC
AAAGATCTCAAGTAATTCAATTGAAAAAGAATTAAATAAATGTTATTATG
ATCAGTCAAAGAATGAATCTTACTTGTTTCAATTATCAAAAAATGAACAG
CCAATTTCAATTGAATCATTTTGCACTCAATTTAAACAATTAAATGATGA
TAGTAATAATAATAAAAATAATAATAAATATTACATGATTTACTCTCATA
GAAATGGTAGTTGCCAATCAGTAGGAAATAATAAATTTACACAGTTGTAT
TGTATTGGAGATAAAATCCATGAATATAA----------TTTAAATGAAA
ATAATAATTCCCAATTTGTAAANTCATATTTTTCAAATTCAACAAATAAT
TGTAATAGTAAATCAGTTAAAGTTTCAAAATTATTAAACAATAAAATTCA
ATTAGAAAATTCAAGTAGTAGTAGAACATTCANTTTTTTTTTATTATNAN
TTGAAATTATAATTATTATTAATGTGGTTAATTATATTTAAAAAAAAAAA
AAAAAAGAAAAAAAAAAAAAAAAAAATTAAATAATTAAATAAAAAAAAAA
AAAAAATAATTAAATAAAAAAAAAAAAAAAAAAAAAAAAA
Gap gap included
Contig length 830
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 2
Number of EST 3
Link to clone list U01531
List of clone(s) 

est1=SSC266F,1,530
est2=SSB179F,7,205
est3=SSB179Z,531,832
Translated Amino Acid sequence 
kclik*fyclyffkf*qfk*n*FIHMKLDILYLVIQECNSTNIKIMISATKCSDFGLVQI
INNNKIIINNNINSINDCLSPSSKISSNSIEKELNKCYYDQSKNESYLFQLSKNEQPISI
ESFCTQFKQLNDDSNNNKNNNKYYMIYSHRNGSCQSVGNNKFTQLYCIGDKIHEY---

---LNENNNSQFVXSYFSNSTNNCNSKSVKVSKLLNNKIQLENSSSSRTFXFFLLXXEII
IIINVVNYI*kkkkkekkkkkn*iik*kkkknn*ikkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
knv**nnfivyifsnfnnsnkinsfi*n*ifci**fknviqqilk**svlqnvqildwfk
lliiiks*liiiliq*mivylllqrsqviqlkkn*invimisqrmnltcfnyqkmnsqfq
lnhfalnlnn*mmiviiikiiinit*ftliemvvanq*eiinlhscivleiksmni---

---fk*k**fpickxiffkfnk*l***is*sfkiikq*nsirkfk***nixfffixx*ny
nyy*cg*lylkkkkkrkkkkkklnn*ikkkkk*lnkkkkkkkk

Frame B:
kmfnkiillfiffqiltiqiklihsyeiryfvfsdsrm*fnky*nndqcykmfrfwigsn
y****nhn***y*fnk*lfisffkdlk*fn*krik*mll*svke*illvsiikk*tanfn
*iilhsi*tik*******k***ilhdlls*kw*lpisrk**iytvvlywr*np*i*---

---LNENNNSQFVXSYFSNSTNNCNSKSVKVSKLLNNKIQLENSSSSRTFXFFLLXXEII
IIINVVNYI*kkkkkekkkkkn*iik*kkkknn*ikkkkkkkk

Frame C:
kclik*fyclyffkf*qfk*n*FIHMKLDILYLVIQECNSTNIKIMISATKCSDFGLVQI
INNNKIIINNNINSINDCLSPSSKISSNSIEKELNKCYYDQSKNESYLFQLSKNEQPISI
ESFCTQFKQLNDDSNNNKNNNKYYMIYSHRNGSCQSVGNNKFTQLYCIGDKIHEY---

---*mkiiipnl*xhifqiqqiivivnqlkfqny*tikfn*kiqvvvehsxffyyxlkl*
lllmwliifkkkkkkkkkkkkik*lnkkkkkiik*kkkkkkk
own update 2004. 6. 7
Homology vs CSM-cDNA 
Query= Contig-U01531-1 (Contig-U01531-1Q)
/CSM_Contig/Contig-U01531-1Q.Seq.d
         (840 letters)

Database: CSM
           8361 sequences; 7,895,291 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01531-1 (Contig-U01531-1Q) /CSM_Contig/Conti...   476  e-134
Contig-U10902-1 (Contig-U10902-1Q) /CSM_Contig/Conti...    38  0.021
Contig-U09459-1 (Contig-U09459-1Q) /CSM_Contig/Conti...    38  0.021
Contig-U06540-1 (Contig-U06540-1Q) /CSM_Contig/Conti...    38  0.021
Contig-U01808-1 (Contig-U01808-1Q) /CSM_Contig/Conti...    38  0.021
Contig-U13711-1 (Contig-U13711-1Q) /CSM_Contig/Conti...    36  0.082
Contig-U13498-1 (Contig-U13498-1Q) /CSM_Contig/Conti...    36  0.082
Contig-U12916-1 (Contig-U12916-1Q) /CSM_Contig/Conti...    36  0.082
Contig-U12063-1 (Contig-U12063-1Q) /CSM_Contig/Conti...    36  0.082
Contig-U11958-1 (Contig-U11958-1Q) /CSM_Contig/Conti...    36  0.082

>Contig-U01531-1 (Contig-U01531-1Q) /CSM_Contig/Contig-U01531-1Q.Seq.d
          Length = 840

 Score =  476 bits (240), Expect = e-134
 Identities = 300/309 (97%)
 Strand = Plus / Plus

                                                                       
Query: 431 ttacatgatttactctcatagaaatggtagttgccaatcagtaggaaataataaatttac 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ttacatgatttactctcatagaaatggtagttgccaatcagtaggaaataataaatttac 490

                                                                       
Query: 491 acagttgtattgtattggagataaaatccatgaatataannnnnnnnnntttaaatgaaa 550
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 acagttgtattgtattggagataaaatccatgaatataannnnnnnnnntttaaatgaaa 550

                                                                       
Query: 551 ataataattcccaatttgtaaantcatatttttcaaattcaacaaataattgtaatagta 610
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ataataattcccaatttgtaaantcatatttttcaaattcaacaaataattgtaatagta 610

                                                                       
Query: 611 aatcagttaaagtttcaaaattattaaacaataaaattcaattagaaaattcaagtagta 670
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 aatcagttaaagtttcaaaattattaaacaataaaattcaattagaaaattcaagtagta 670

                                                                       
Query: 671 gtagaacattcannnnnnnnnnattatnanttgaaattataattattattaatgtggtta 730
           |||||||||||||         ||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gtagaacattcantttttttttattatnanttgaaattataattattattaatgtggtta 730

                    
Query: 731 attatattt 739
           |||||||||
Sbjct: 731 attatattt 739


 Score =  359 bits (181), Expect = 4e-99
 Identities = 181/181 (100%)
 Strand = Plus / Plus

                                                                       
Query: 223 caataaatgattgtttatctccttcttcaaagatctcaagtaattcaattgaaaaagaat 282
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 caataaatgattgtttatctccttcttcaaagatctcaagtaattcaattgaaaaagaat 282

                                                                       
Query: 283 taaataaatgttattatgatcagtcaaagaatgaatcttacttgtttcaattatcaaaaa 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 taaataaatgttattatgatcagtcaaagaatgaatcttacttgtttcaattatcaaaaa 342

                                                                       
Query: 343 atgaacagccaatttcaattgaatcattttgcactcaatttaaacaattaaatgatgata 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 atgaacagccaatttcaattgaatcattttgcactcaatttaaacaattaaatgatgata 402

            
Query: 403 g 403
           |
Sbjct: 403 g 403


 Score =  224 bits (113), Expect = 2e-58
 Identities = 113/113 (100%)
 Strand = Plus / Plus

                                                                       
Query: 65  ttaattcattcatatgaaattagatattttgtatttagtgattcaagaatgtaattcaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  ttaattcattcatatgaaattagatattttgtatttagtgattcaagaatgtaattcaac 124

                                                                
Query: 125 aaatattaaaataatgatcagtgctacaaaatgttcagattttggattggttc 177
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 aaatattaaaataatgatcagtgctacaaaatgttcagattttggattggttc 177


>Contig-U10902-1 (Contig-U10902-1Q) /CSM_Contig/Contig-U10902-1Q.Seq.d
          Length = 5146

 Score = 38.2 bits (19), Expect = 0.021
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 288  aaatgttattatgatcagtcaaa 310
            ||||||||||||||||| |||||
Sbjct: 3691 aaatgttattatgatcaatcaaa 3713


 Score = 38.2 bits (19), Expect = 0.021
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 579 tttttcaaattcaacaaat 597
           |||||||||||||||||||
Sbjct: 19  tttttcaaattcaacaaat 1


>Contig-U09459-1 (Contig-U09459-1Q) /CSM_Contig/Contig-U09459-1Q.Seq.d
          Length = 842

 Score = 38.2 bits (19), Expect = 0.021
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 579 tttttcaaattcaacaaat 597
           |||||||||||||||||||
Sbjct: 400 tttttcaaattcaacaaat 382


  Database: CSM
    Posted date:  Jun 7, 2004  8:33 AM
  Number of letters in database: 7,895,291
  Number of sequences in database:  8361
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,947
Number of Sequences: 8361
Number of extensions: 24947
Number of successful extensions: 3467
Number of sequences better than 10.0: 500
length of query: 840
length of database: 7,895,291
effective HSP length: 16
effective length of query: 824
effective length of database: 7,761,515
effective search space: 6395488360
effective search space used: 6395488360
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 4.30
Homology vs DNA 
Query= Contig-U01531-1 (Contig-U01531-1Q) /CSM_Contig/Contig-U01531-1Q.Seq.d
         (840 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU051852) Dictyostelium discoideum slug cDNA, clone SSB179.      278   2e-88  2
(AU071297) Dictyostelium discoideum slug cDNA, clone SSB179.      182   1e-41  1
(AU071685) Dictyostelium discoideum slug cDNA, clone SSC266.      137   8e-40  2
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    36   7e-04  11
(BV555372) S222P6932FB8.T0 Karlien Pan troglodytes verus STS...    56   0.002  1
(BV509828) qxd56f04.g1 Clint Pan troglodytes verus STS genom...    56   0.002  1
(BV506642) qtc01b03.b1 Clint Pan troglodytes verus STS genom...    56   0.002  1
(BS000073) Pan troglodytes chromosome 22 clone:RP43-040P11, ...    56   0.002  1
(CU682764) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.006  7
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    38   0.010  10
(AC217790) Medicago truncatula chromosome 2 clone mte1-82a7,...    34   0.041  7
(AC165591) Bos taurus clone CH240-169M16, WORKING DRAFT SEQU...    38   0.042  5
(AL035477) Plasmodium falciparum MAL4P4.                           36   0.043  11
(AC180678) Strongylocentrotus purpuratus clone R3-3087O14, W...    38   0.072  5
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3...    36   0.077  9
(AE001388) Plasmodium falciparum 3D7 chromosome 2 section 25...    36   0.095  2
(AA550626) 1814m3 gmbPfHB3.1, G. Roman Reddy Plasmodium falc...    36   0.11   2
(N97707) 1596C3 czapPFDd2.1, Debopam Chakrabarti Plasmodium ...    36   0.12   2
(BV518479) srp32c02.b1 Clint Pan troglodytes verus STS genom...    50   0.14   1
(AC219972) Bos taurus clone CH240-317J18, WORKING DRAFT SEQU...    50   0.14   1
(AC219495) Bos taurus clone CH240-332J14, WORKING DRAFT SEQU...    50   0.14   1
(BZ083423) llf57g06.b1 B.oleracea002 Brassica oleracea genom...    50   0.14   1
(BZ002369) oem83c05.b1 B.oleracea002 Brassica oleracea genom...    50   0.14   1
(BH652712) BOMLC07TF BO_2_3_KB Brassica oleracea genomic clo...    50   0.14   1
(AC004055) Homo sapiens chromosome 4 clone B221D23 map 4q25,...    44   0.20   2
(BH137704) ENTNR90TF Entamoeba histolytica Sheared DNA Entam...    34   0.23   3
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    32   0.25   10
(AC213422) Populus trichocarpa clone POP035-B03, complete se...    40   0.28   4
(AC010382) Homo sapiens chromosome 5 clone CTD-2068C11, comp...    40   0.30   7
(AC021048) Homo sapiens chromosome 12 clone RP11-6K23, *** S...    36   0.31   2
(AC087235) Homo sapiens 12 BAC RP11-153K16 (Roswell Park Can...    36   0.31   2
(CU467888) Zebrafish DNA sequence from clone DKEY-57N24 in l...    48   0.31   3
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    34   0.32   13
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    36   0.32   10
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...    34   0.35   9
(ET666623) MUGQ_CH252P456D19Sp6_CH0114_078 CHORI-252 Vervet ...    34   0.40   2
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    32   0.48   7
(CR382401) Plasmodium falciparum chromosome 6, complete sequ...    36   0.53   10
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5...    34   0.54   11
(AC146380) Pan troglodytes BAC clone RP43-99L3 from chromoso...    48   0.55   1
(AC145906) Pan troglodytes BAC clone RP43-9J5 from chromosom...    48   0.55   1
(AP009726) Lotus japonicus genomic DNA, clone: LjT04G17, TM1...    48   0.55   1
(AP000475) Homo sapiens genomic DNA, chromosome 21 clone:RP1...    48   0.55   1
(AL163227) Homo sapiens chromosome 21 segment HS21C027.            48   0.55   1
(AF236874) Homo sapiens chromosome 21 map 21q21, BAC B242B02...    48   0.55   1
(AC073345) Homo sapiens BAC clone RP11-630O5 from 7, complet...    48   0.55   1
(EG616365) REPROTRACTF088214O5 POSSUM_01-POSSUM-C-REPROTRACT...    48   0.55   1
(EC322970) EMBRYOF088885P10 POSSUM_01-POSSUM-C-EMBRYO-2KB Tr...    48   0.55   1
(EX822285) CcLXCa53k17n1 Caroline common carp adult brain Cy...    48   0.55   1
(Z70272) Human DNA sequence from clone RP1-30E17 on chromoso...    40   0.55   2
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    32   0.58   8
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5...    36   0.60   9
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ...    36   0.61   9
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co...    34   0.67   15
(CU638865) H.numata DNA sequence from clone AEHN-45B17.            38   0.68   5
(EK403591) 1095469554125 Global-Ocean-Sampling_GS-31-01-01-1...    40   0.69   3
(CS374609) Sequence 712 from Patent WO2006034879.                  44   0.74   2
(CR388369) Zebrafish DNA sequence from clone CH211-207N23 in...    40   0.87   5
(EJ392981) 1092963975677 Global-Ocean-Sampling_GS-28-01-01-1...    38   0.87   3
(EJ783807) 1093017298404 Global-Ocean-Sampling_GS-30-02-01-1...    32   0.95   3
(AL844506) Plasmodium falciparum chromosome  7.                    34   0.98   15
(AC194803) Pan troglodytes BAC clone CH251-301C13 from chrom...    40   1.1    2
(AL591853) Human DNA sequence *** SEQUENCING CANCELLED *** f...    40   1.1    2
(AL158202) Human DNA sequence *** SEQUENCING CANCELLED *** f...    40   1.1    2
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    34   1.1    10
(AC214722) Pteropus vampyrus clone CH279-402B5, WORKING DRAF...    34   1.1    2
(ER537084) 1093015866560 Global-Ocean-Sampling_GS-35-01-01-1...    36   1.2    2
(DD061484) Methods and nucleic acids for the analysis of  he...    38   1.2    4
(AX599046) Sequence 386 from Patent WO02077272.                    38   1.2    4
(CU856182) H.numata DNA sequence from clone AEHN-24I10.            38   1.3    5
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    34   1.4    10
(AF090533) Dictyostelium discoideum unconventional myosin he...    36   1.4    3
(EJ893325) 1093018454898 Global-Ocean-Sampling_GS-30-02-01-1...    32   1.5    3
(EJ749023) 1092963022849 Global-Ocean-Sampling_GS-30-02-01-1...    34   1.5    2
(EJ761243) 1092963134322 Global-Ocean-Sampling_GS-30-02-01-1...    34   1.5    2
(EJ721878) 1092959456735 Global-Ocean-Sampling_GS-30-02-01-1...    36   1.5    2
(ER804251) PPTBN47TF Solanum tuberosum RHPOTKEY BAC ends Sol...    34   1.5    2
(EJ411828) 1093012151436 Global-Ocean-Sampling_GS-28-01-01-1...    34   1.5    2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    36   1.5    14
(EF373926) Anabrus simplex voucher OR089.3 large subunit rib...    34   1.6    3
(EF373927) Anabrus simplex voucher OR089.4 large subunit rib...    34   1.6    3
(EF373953) Anabrus simplex voucher OR116 large subunit ribos...    34   1.6    3
(EF373929) Anabrus simplex voucher OR090.2 large subunit rib...    34   1.6    3
(EF373923) Anabrus simplex voucher OR088.5 large subunit rib...    34   1.6    3
(EF373951) Anabrus simplex voucher OR114 large subunit ribos...    34   1.6    3
(EF373918) Anabrus simplex voucher OR087.3 large subunit rib...    34   1.6    3
(EF373964) Anabrus simplex voucher OR127 large subunit ribos...    34   1.6    3
(EF373957) Anabrus simplex voucher OR120 large subunit ribos...    34   1.6    3
(EF373936) Anabrus simplex voucher OR099 large subunit ribos...    34   1.6    3
(EF373917) Anabrus simplex voucher OR087.1 large subunit rib...    34   1.6    3
(EF373916) Anabrus simplex voucher OR086.5 large subunit rib...    34   1.6    3
(EF373955) Anabrus simplex voucher OR118 large subunit ribos...    34   1.6    3
(EF373954) Anabrus simplex voucher OR117 large subunit ribos...    34   1.6    3
(EF373942) Anabrus simplex voucher OR105 large subunit ribos...    34   1.6    3
(EF373915) Anabrus simplex voucher OR086.4 large subunit rib...    34   1.6    3
(EF373914) Anabrus simplex voucher OR086.3 large subunit rib...    34   1.6    3
(EF373913) Anabrus simplex voucher OR086.2 large subunit rib...    34   1.6    3
(EF373956) Anabrus simplex voucher OR119 large subunit ribos...    34   1.6    3
(EF373950) Anabrus simplex voucher OR113 large subunit ribos...    34   1.6    3
(EF373944) Anabrus simplex voucher OR107 large subunit ribos...    34   1.6    3
(EF373943) Anabrus simplex voucher OR106 large subunit ribos...    34   1.6    3
(EF373941) Anabrus simplex voucher OR104 large subunit ribos...    34   1.6    3
(EF373937) Anabrus simplex voucher OR100 large subunit ribos...    34   1.6    3
(EF373935) Anabrus simplex voucher OR098 large subunit ribos...    34   1.6    3
(EF373930) Anabrus simplex voucher OR090.3 large subunit rib...    34   1.6    3
(EF373928) Anabrus simplex voucher OR089.5 large subunit rib...    34   1.6    3
(EF373925) Anabrus simplex voucher OR089.2 large subunit rib...    34   1.6    3
(EF373922) Anabrus simplex voucher OR088.3 large subunit rib...    34   1.6    3
(EF373921) Anabrus simplex voucher OR088.2 large subunit rib...    34   1.6    3
(EF373912) Anabrus simplex voucher OR086.1 large subunit rib...    34   1.6    3
(EF373961) Anabrus simplex voucher OR124 large subunit ribos...    34   1.6    3
(EF373952) Anabrus simplex voucher OR115 large subunit ribos...    34   1.6    3
(EF373946) Anabrus simplex voucher OR109 large subunit ribos...    34   1.6    3
(EF373931) Anabrus simplex voucher OR090.4 large subunit rib...    34   1.6    3
(EF373963) Anabrus simplex voucher OR126 large subunit ribos...    34   1.6    3
(EF373962) Anabrus simplex voucher OR125 large subunit ribos...    34   1.6    3
(EF373945) Anabrus simplex voucher OR108 large subunit ribos...    34   1.6    3
(EF373934) Anabrus simplex voucher OR097 large subunit ribos...    34   1.6    3
(EF373933) Anabrus simplex voucher OR096 large subunit ribos...    34   1.6    3
(EF373919) Anabrus simplex voucher OR087.4 large subunit rib...    34   1.6    3
(EF373948) Anabrus simplex voucher OR111 large subunit ribos...    34   1.6    3
(EF373939) Anabrus simplex voucher OR102 large subunit ribos...    34   1.6    3
(EF373938) Anabrus simplex voucher OR101 large subunit ribos...    34   1.6    3
(AZ528221) ENTCD41TR Entamoeba histolytica Sheared DNA Entam...    42   1.6    2
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4...    34   1.7    10
(AF083031) Guillardia theta nucleomorph chromosome 3, comple...    34   1.7    7
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3...    32   1.7    9
(AB017910) Dictyostelium discoideum myoM gene, complete cds.       36   1.8    3
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    34   1.9    11
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    40   2.0    6
(AC005308) Plasmodium falciparum chromosome 12 clone PFYAC49...    36   2.1    8
(AC189032) Callithrix jacchus BAC clone CH259-18H12 from chr...    46   2.2    1
(FM992689) Candida dubliniensis CD36 chromosome 2, complete ...    46   2.2    1
(CT962503) M.truncatula DNA sequence from clone MTH2-180L11 ...    46   2.2    1
(AM488646) Vitis vinifera contig VV78X116240.4, whole genome...    46   2.2    1
(AM428196) Vitis vinifera contig VV78X040591.14, whole genom...    46   2.2    1
(DL083629) Listeria innocua, genome and applications.              46   2.2    1
(DL081580) Listeria innocua, genome and applications.              46   2.2    1
(AX417049) Sequence 4040 from Patent WO0228891.                    46   2.2    1
(AX417036) Sequence 4027 from Patent WO0228891.                    46   2.2    1
(AX345874) Sequence 945 from Patent WO0200928.                     46   2.2    1
(CU640397) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.2    1
(CU469233) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.2    1
(AC185480) Zea mays chromosome 4 clone CH201-194C9; ZMMBBc01...    46   2.2    1
(AC165572) Bos taurus clone CH240-173F5, WORKING DRAFT SEQUE...    46   2.2    1
(BH155077) ENTTO66TR Entamoeba histolytica Sheared DNA Entam...    46   2.2    1
(BH966803) odi26g10.b1 B.oleracea002 Brassica oleracea genom...    46   2.2    1
(AM295250) Staphylococcus carnosus subsp. carnosus TM300 com...    46   2.2    1
(AL596173) Listeria innocua Clip11262 complete genome, segme...    46   2.2    1
(AC116551) Dictyostelium discoideum chromosome 2 map complem...    34   2.3    9
(EJ879158) 1093018387218 Global-Ocean-Sampling_GS-30-02-01-1...    32   2.4    3
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    36   2.4    8
(AC215362) Solanum lycopersicum chromosome 2 clone C02HBa002...    38   2.4    5
(AC215942) Populus trichocarpa clone POP054-D10, complete se...    38   2.5    4
(U40030) Caenorhabditis elegans cosmid T13C2, complete seque...    34   2.6    5
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975...    34   2.6    8
(DL240088) Method of preparating merkmal for distinguishing ...    30   2.7    4
(AZ671723) ENTKZ09TR Entamoeba histolytica Sheared DNA Entam...    34   2.8    3
(CR388031) Zebrafish DNA sequence from clone CH211-192P3 in ...    32   3.2    6
(FH953179) CHO_OF6758xp15r1.ab1 CHO_OF6 Nicotiana tabacum ge...    40   3.3    2
(FH542150) CHO_OF4124xp10f1.ab1 CHO_OF4 Nicotiana tabacum ge...    40   3.4    2
(ET722392) CHO_OF126xh05r1.ab1 CHO_OF Nicotiana tabacum geno...    40   3.5    2
(AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1...    36   3.7    11
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ...    32   4.0    11
(AC164735) Bos taurus clone CH240-153H16, *** SEQUENCING IN ...    32   4.1    2
(AC173040) Bos taurus clone CH240-98E16, WORKING DRAFT SEQUE...    32   4.1    2
(CU682349) M.truncatula DNA sequence from clone MTH2-90A5 on...    32   4.2    2
(AE014848) Plasmodium falciparum 3D7 chromosome 12, section ...    34   4.2    8
(AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6...    34   4.4    8
(CR628406) Zebrafish DNA sequence from clone CH211-146A2 in ...    30   4.7    9
(CS442670) Sequence 53 from Patent WO2006050313.                   32   5.0    2
(AM426354) Vitis vinifera contig VV78X131738.5, whole genome...    36   5.1    2
(GE447333) 294580579 Nasonia vitripennis Adult Female Nasoni...    36   5.1    2
(EJ345527) 1092963544927 Global-Ocean-Sampling_GS-28-01-01-1...    36   5.2    2
(AC105252) Homo sapiens BAC clone RP11-285A15 from 4, comple...    34   5.3    6
(CR759823) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   5.4    6
(EK385085) 1095469479882 Global-Ocean-Sampling_GS-31-01-01-1...    32   5.5    2
(AE017245) Mycoplasma synoviae 53, complete genome.                34   5.5    16
(FH673576) CHO_OF5042xk17r1.ab1 CHO_OF5 Nicotiana tabacum ge...    34   5.5    2
(FH212341) CHO_OF3367xd10f1.ab1 CHO_OF3 Nicotiana tabacum ge...    32   5.5    2
(FH008164) CHO_OF403xd21r1.ab1 CHO_OF Nicotiana tabacum geno...    34   5.6    2
(GE384255) 293688098 Nasonia vitripennis Female Pupae Nasoni...    36   5.6    2
(CZ178967) MIAA-13P08b.b1 Meloidogyne incognita BAC end sequ...    34   5.6    2
(CZ173121) MIAA-27E13b.b1 Meloidogyne incognita BAC end sequ...    34   5.6    2
(EJ827546) 1093017567351 Global-Ocean-Sampling_GS-30-02-01-1...    36   5.6    2
(AL110485) Caenorhabditis elegans YAC Y46G5A.                      42   5.6    6
(EK351555) 1095467964757 Global-Ocean-Sampling_GS-31-01-01-1...    34   5.7    2
(AC170582) Medicago truncatula chromosome 7 BAC clone mth2-5...    38   5.7    4
(EJ674646) 1092955073195 Global-Ocean-Sampling_GS-30-02-01-1...    34   5.9    2
(AC005140) Plasmodium falciparum chromosome 12 clone PFYACB8...    38   5.9    9
(EH215011) USDA-FP_177799 WHMH (pink hibiscus mealybug) Maco...    38   6.0    2
(CR381601) Zebrafish DNA sequence from clone DKEY-194G4 in l...    40   6.1    5
(ES647784) NVPS702TR NVPP Nasonia vitripennis cDNA, mRNA seq...    36   6.2    2
(EK422884) 1095515638659 Global-Ocean-Sampling_GS-31-01-01-1...    38   6.2    2
(EJ080196) 1095460016399 Global-Ocean-Sampling_GS-26-01-01-1...    38   6.4    2
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    32   6.4    10
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co...    36   6.5    6
(AY691421) Maconellicoccus hirsutus cytochrome b (cytb) gene...    38   6.6    3
(AC113321) Mus musculus chromosome 3, clone RP23-445D13, com...    40   6.6    4
(EJ718176) 1092959435969 Global-Ocean-Sampling_GS-30-02-01-1...    40   6.7    2
(AF477254) Habronattus cognatus isolate TX 16S ribosomal RNA...    36   6.9    2
(ER468451) 1092963938591 Global-Ocean-Sampling_GS-35-01-01-1...    36   6.9    2
(EJ725797) 1092959499467 Global-Ocean-Sampling_GS-30-02-01-1...    40   7.0    2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   7.1    14
(AC175829) Medicago truncatula chromosome 7 BAC clone mth2-2...    38   7.1    3
(CU856336) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   7.4    6
(EH217477) USDA-FP_180274 WHMH (pink hibiscus mealybug) Maco...    38   7.5    2
(EH215341) USDA-FP_178156 WHMH (pink hibiscus mealybug) Maco...    38   7.7    2
(EU401918) Bombus hypocrita sapporoensis mitochondrion, part...    32   7.8    5
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    32   7.9    9
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         36   8.0    8
(EH217891) USDA-FP_180690 WHMH (pink hibiscus mealybug) Maco...    38   8.1    2
(EH211595) USDA-FP_174385 WHMH (pink hibiscus mealybug) Maco...    38   8.1    2
(EY385138) CAXA5532.rev CAXA Helobdella robusta Subtracted L...    34   8.2    3
(EU677193) Oedogonium cardiacum strain SAG 575-1b chloroplas...    42   8.3    7
(EH211857) USDA-FP_174648 WHMH (pink hibiscus mealybug) Maco...    38   8.3    2
(EH217796) USDA-FP_180596 WHMH (pink hibiscus mealybug) Maco...    38   8.5    2
(CR759882) Zebrafish DNA sequence from clone CH211-208G12 in...    44   8.6    1
(CR407592) Zebrafish DNA sequence from clone DKEY-166N5.           44   8.6    1
(BX571981) Zebrafish DNA sequence from clone DKEY-31J3 in li...    44   8.6    1
(BV918022) pRRL2:Newb:20080411:29788 USMARC Pig Breed SNP Di...    44   8.6    1
(AC164408) Mus musculus chromosome 3, clone RP23-384A11, com...    44   8.6    1
(AC127951) Rattus norvegicus 18 BAC CH230-150D9 (Children's ...    44   8.6    1
(AC119840) Mus musculus chromosome 3, clone RP24-112E5, comp...    44   8.6    1
(AC107780) Mus musculus chromosome 8, clone RP23-61O10, comp...    44   8.6    1
(CU929468) S.lycopersicum DNA sequence from clone LE_HBa-72F...    44   8.6    1
(AP009396) Solanum lycopersicum genomic DNA, chromosome 8, c...    44   8.6    1
(AM466253) Vitis vinifera contig VV78X265329.7, whole genome...    44   8.6    1
(CS468856) Sequence 47 from Patent EP1748080.                      44   8.6    1
(CS468855) Sequence 46 from Patent EP1748080.                      44   8.6    1
(CS419333) Sequence 47 from Patent WO2006094836.                   44   8.6    1
(CS419332) Sequence 46 from Patent WO2006094836.                   44   8.6    1
(FJ435893) Sobarocephala latifacies voucher OL133DEBU COI ge...    44   8.6    1
(FJ435889) Sobarocephala atricornis voucher OL123DEBU cytoch...    44   8.6    1
(AC118549) Homo sapiens chromosome 1 clone RP11-306I4, compl...    44   8.6    1
(AC092621) Homo sapiens BAC clone RP11-240A2 from 4, complet...    44   8.6    1
(AC008435) Homo sapiens chromosome 5 clone CTC-326G7, comple...    44   8.6    1
(AC160268) Bos taurus clone CH240-89H22, WORKING DRAFT SEQUE...    44   8.6    1
(AC156722) Bos taurus clone CH240-54K23, WORKING DRAFT SEQUE...    44   8.6    1
(AC127940) Rattus norvegicus clone CH230-137B24, *** SEQUENC...    44   8.6    1
(AC127839) Rattus norvegicus clone CH230-292F17, *** SEQUENC...    44   8.6    1
(AC125641) Rattus norvegicus clone CH230-52D8, *** SEQUENCIN...    44   8.6    1
(AC116091) Rattus norvegicus clone CH230-377N11, *** SEQUENC...    44   8.6    1
(AC114014) Rattus norvegicus clone CH230-16N14, *** SEQUENCI...    44   8.6    1
(AC114013) Rattus norvegicus clone CH230-15J10, *** SEQUENCI...    44   8.6    1
(AC113661) Rattus norvegicus clone CH230-166O11, *** SEQUENC...    44   8.6    1
(AC112591) Rattus norvegicus clone CH230-360K12, WORKING DRA...    44   8.6    1
(AC111818) Rattus norvegicus clone CH230-48I5, *** SEQUENCIN...    44   8.6    1
(CU861965) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.6    1
(AC026921) Homo sapiens chromosome 4 clone RP11-804J24 map 4...    44   8.6    1
(CU466980) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.6    1
(CR847798) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   8.6    1
(AP001958) Homo sapiens genomic DNA, chromosome 4q22-q24, cl...    44   8.6    1
(AC223851) Bos taurus clone CH240-456G3, WORKING DRAFT SEQUE...    44   8.6    1
(AC221447) Bos taurus clone CH240-410E20, WORKING DRAFT SEQU...    44   8.6    1
(AC219265) Bos taurus clone CH240-334M5, WORKING DRAFT SEQUE...    44   8.6    1
(AC171506) Bos taurus clone CH240-299K17, WORKING DRAFT SEQU...    44   8.6    1
(AC170957) Bos taurus clone CH240-254I20, WORKING DRAFT SEQU...    44   8.6    1
(AC164383) Bos taurus clone CH240-150N11, *** SEQUENCING IN ...    44   8.6    1
(AC016351) Homo sapiens chromosome 15 clone RP11-423O13 map ...    44   8.6    1
(AZ389237) 1M0149H02R Mouse 10kb plasmid UUGC1M library Mus ...    44   8.6    1
(FI146145) MUGQ_CH252P518D11T7_CH0255_046 CHORI-252 Vervet M...    44   8.6    1
(ET432638) MUGQ_CH252P432K05T7_CP826_021 CHORI-252 Vervet Mo...    44   8.6    1
(ET068839) QM0AAA1DE05RM1 CCL1 Citrus clementina genomic clo...    44   8.6    1
(EK133518) 1093011412275 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.6    1
(EJ503208) 1095403663544 Global-Ocean-Sampling_GS-28-01-01-1...    44   8.6    1
(DX127401) OG_ABa0156I15.r OG_ABa Oryza granulata genomic cl...    44   8.6    1
(DU924170) 347062 Tomato EcoRI BAC Library Solanum lycopersi...    44   8.6    1
(DU332914) 1098312050205 CHORI-243 Ovis aries genomic clone ...    44   8.6    1
(DH611340) Rattus norvegicus DNA, BAC clone: RNB1-140N16, 3'...    44   8.6    1
(CZ955202) 269732 Tomato EcoRI BAC Library Solanum lycopersi...    44   8.6    1
(CE531005) tigr-gss-dog-17000365873114 Dog Library Canis lup...    44   8.6    1
(BZ286010) CH230-522C18.TV CHORI-230 Segment 2 Rattus norveg...    44   8.6    1
(CX577461) TTE00023087 Amplicon Express - Conjugative Form T...    44   8.6    1
(CN290797) 17000600015280 GRN_PREHEP Homo sapiens cDNA 5', m...    44   8.6    1
(BP170858) Sus scrofa mRNA, clone:UTR010042C10, 5' end, expr...    44   8.6    1
(BI074085) kt39g11.y1 Strongyloides ratti L2 pAMP1 v1 Chiape...    44   8.6    1
(AW814291) MR3-ST0203-221299-023-c02 ST0203 Homo sapiens cDN...    44   8.6    1
(FE957957) Aaem05599 Antheraea assama 96 hours embryo cDNA l...    44   8.6    1
(FD228463) CBZF2076.g1 CBZF: Normalized blue catfish cDNA li...    44   8.6    1
(FC816773) Sr_pAMT7_07a24_T7 S. ratti mixed stage pAMP Stron...    44   8.6    1
(EW919728) G894P5159RO13.T0 Ixodes scapularis Pooled Non-inf...    44   8.6    1
(CP000488) Candidatus Ruthia magnifica str. Cm (Calyptogena ...    44   8.6    1
(AE016827) Mannheimia succiniciproducens MBEL55E, complete g...    44   8.6    1
(AC152242) Bos taurus clone CH240-7O10, WORKING DRAFT SEQUEN...    42   8.7    4
(AC026839) Homo sapiens chromosome 5, clone RP11-186B13, com...    38   8.9    7
(AC158533) Mus musculus BAC clone RP23-107I15 from chromosom...    36   8.9    7
(EY346252) CAWZ14566.fwd CAWZ Helobdella robusta Primary Lat...    34   9.1    3
(AL353139) Human DNA sequence *** SEQUENCING CANCELLED *** f...    40   9.3    5
(AC117080) Dictyostelium discoideum chromosome 2 map complem...    34   9.5    8
(EY371186) CAXA1331.rev CAXA Helobdella robusta Subtracted L...    34   9.5    3
(DQ888607) Rhagophthalmus lufengensis mitochondrion, complet...    40   9.6    3
(EH214073) USDA-FP_176857 WHMH (pink hibiscus mealybug) Maco...    38   9.6    2
(EH217580) USDA-FP_180393 WHMH (pink hibiscus mealybug) Maco...    38   9.6    2
(CR846093) Zebrafish DNA sequence from clone DKEY-88P16 in l...    40   9.8    4
(EH214996) USDA-FP_177787 WHMH (pink hibiscus mealybug) Maco...    38   9.9    2

>(AU051852) Dictyostelium discoideum slug cDNA, clone SSB179.
          Length = 302

 Score =  278 bits (140), Expect(2) = 2e-88
 Identities = 143/143 (100%)
 Strand = Plus / Plus


Query: 540 tttaaatgaaaataataattcccaatttgtaaantcatatttttcaaattcaacaaataa 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tttaaatgaaaataataattcccaatttgtaaantcatatttttcaaattcaacaaataa 60


Query: 600 ttgtaatagtaaatcagttaaagtttcaaaattattaaacaataaaattcaattagaaaa 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttgtaatagtaaatcagttaaagtttcaaaattattaaacaataaaattcaattagaaaa 120


Query: 660 ttcaagtagtagtagaacattca 682
           |||||||||||||||||||||||
Sbjct: 121 ttcaagtagtagtagaacattca 143

 Score = 81.8 bits (41), Expect(2) = 2e-88
 Identities = 47/47 (100%)
 Strand = Plus / Plus


Query: 693 attatnanttgaaattataattattattaatgtggttaattatattt 739
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 attatnanttgaaattataattattattaatgtggttaattatattt 200

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 891,664,956
Number of extensions: 63021075
Number of successful extensions: 5812381
Number of sequences better than 10.0: 297
Length of query: 840
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 816
Effective length of database: 99,340,224,878
Effective search space: 81061623500448
Effective search space used: 81061623500448
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.17
Homology vs Protein 
Query= Contig-U01531-1 (Contig-U01531-1Q) /CSM_Contig/Contig-U01531-1Q.Seq.d
         (840 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL844505_76(AL844505|pid:none) Plasmodium falciparum 3D7 chromos...    35   2.4
AE014188_67(AE014188|pid:none) Plasmodium falciparum 3D7 chromos...    35   3.1
AE014187_276(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    34   6.9

>AL844505_76(AL844505|pid:none) Plasmodium falciparum 3D7 chromosome
           6.  &CR382398_76(CR382398|pid:none)
          Length = 2752

 Score = 35.4 bits (80), Expect = 2.4
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 544 NENNNSQFVXSYFSNSTNNCNSKSVKV--SKLLNNKIQLENSSS 669
           N NNNS     Y + S NNCN+K +    + L NNK  + N+++
Sbjct: 511 NNNNNSNIYPFYKNTSINNCNNKKINEYDNNLFNNKKDILNNTN 554

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 711,293,386
Number of extensions: 9191677
Number of successful extensions: 33606
Number of sequences better than 10.0: 3
Number of HSP's gapped: 29598
Number of HSP's successfully gapped: 3
Length of query: 280
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 153
Effective length of database: 640,137,871
Effective search space: 97941094263
Effective search space used: 97941094263
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.77  gvh: 0.54  alm: 0.25  top: 0.47  tms: 0.07  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 16.0 %: nuclear
	 16.0 %: vesicles of secretory system
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for Contig-U01531-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0