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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U09024-1
Contig ID Contig-U09024-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U09024-1 (Contig-U09024-1Q) /CSM_Contig/Contig-U09024-1Q.Seq.d
ATAATAATAAAAACACACAATGAGTGAATCAGCTGTACCAGCTGACATTA
TAATGCAACCATTTGCAAAATTATCAGAAGAATCACTTAAATTAGCAGTT
GAATCATTAAATGAACTTAAAATACCAAACACAACATTAGCATCAACCAC
AGCAGAACAACAACAACAACAACAACAGCAGCAGCAACCACCATCATCAT
CTACAACTAAAGAAGGTGGTGCAACTACAACTCAAGATAATAAATTAACT
GCAAATGGTGGAACTACAGCTGATAATAATAATAATAAACCAATGGTAAT
AAATAAATTAGATTATTTACCAATTATTAAAAGTAATATATGGGATGAAT
CTTATGGTTGGTTAACAACAATTCCAAATTCGGAATCATTTGCACAGATT
ATTGGTACAACTATTAAAGAAGGAAAAGACATTAAAAAGACATTATATAT
ACTAGATCCAAAACAATTGAAAGAATCATTCAATTTATTAGGTTTAGACC
AACAAGAGAATTCCATAGACACCAATGAGATGATATATAAAATAGAAGAG
GAGATGATGATGCAAGGTATCTTCAAAATTTTATTTAAATTAGATAAGAA
AACTTTAGAAAGCTTTTGTAGAGATTTAAAAATTCAAATAAAAGATGATA
TGG----------TTACAGCCGGNANTTAAATNAGCAACAACTGNNACTG
CAGGCATAGTACCAACAACCNCTACNACACCNCCACAGGCNACAACAACA
ACAACCACAACAACACCACCAACAAATATAATAGCACCAAAAACTAACTC
AACTATAATATCACCACCAACAGAAGCACCATCAAAACCAGCACCAAAAA
CATCAAAATCTCAAGCAACAACAACAACAACAACAACAA
Gap gap included
Contig length 879
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 4280484
End point 4279604
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U09024
List of clone(s) 

est1=SFD494F,1,654
est2=SFD494Z,655,881
Translated Amino Acid sequence 
***KHTMSESAVPADIIMQPFAKLSEESLKLAVESLNELKIPNTTLASTTAEQQQQQQQQ
QQPPSSSTTKEGGATTTQDNKLTANGGTTADNNNNKPMVINKLDYLPIIKSNIWDESYGW
LTTIPNSESFAQIIGTTIKEGKDIKKTLYILDPKQLKESFNLLGLDQQENSIDTNEMIYK
IEEEMMMQGIFKILFKLDKKTLESFCRDLKIQIKDDM---

---LQPXXKXATTXTAGIVPTTXTTPPQATTTTTTTTPPTNIIAPKTNSTIISPPTEAPS
KPAPKTSKSQATTTTTTT
Translated Amino Acid sequence (All Frames) 
Frame A:
iiikthne*iscts*hynatickiirrit*iss*iik*t*ntkhnisinhsrttttttta
aattiiiyn*rrwcnynsr**inckwwnys******tngnk*irlftny*k*ymg*ilwl
vnnnskfgiictdywyny*rrkrh*kdiiytrsktieriiqfirfrptrefhrhq*ddi*
nrrgdddarylqnfi*ir*enfrkll*rfknsnkr*y---

---LQPXXKXATTXTAGIVPTTXTTPPQATTTTTTTTPPTNIIAPKTNSTIISPPTEAPS
KPAPKTSKSQATTTTTTT

Frame B:
***KHTMSESAVPADIIMQPFAKLSEESLKLAVESLNELKIPNTTLASTTAEQQQQQQQQ
QQPPSSSTTKEGGATTTQDNKLTANGGTTADNNNNKPMVINKLDYLPIIKSNIWDESYGW
LTTIPNSESFAQIIGTTIKEGKDIKKTLYILDPKQLKESFNLLGLDQQENSIDTNEMIYK
IEEEMMMQGIFKILFKLDKKTLESFCRDLKIQIKDDM---

---ysrxlnxqqlxlqa*yqqplxhxhrxqqqqpqqhhqqi**hqkltql*yhhqqkhhq
nqhqkhqnlkqqqqqqqq

Frame C:
nnkntq*vnqlyqltl*cnhlqnyqknhln*qlnh*mnlkyqtqh*hqpqqnnnnnnnss
snhhhhlqlkkvvqlqlkiin*lqmvelqliiiiinqw**in*iiyqllkviygmnlmvg
*qqfqirnhlhrllvqllkkektlkrhyiy*iqnn*knhsiy*v*tnkrip*tpmr*yik
*krr**ckvsskfyln*irkl*kafvei*kfk*kmiw---

---tagx*xsnnxxcrhstnnxyxtxtgxnnnnhnnttnkynstkn*lnynittnrstik
tstknikissnnnnnnn
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U09024-1 (Contig-U09024-1Q)
/CSM_Contig/Contig-U09024-1Q.Seq.d
         (889 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U09024-1 (Contig-U09024-1Q) /CSM_Contig/Conti...   731  0.0
Contig-U14010-1 (Contig-U14010-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U12527-1 (Contig-U12527-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U11373-1 (Contig-U11373-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U10731-1 (Contig-U10731-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U13918-1 (Contig-U13918-1Q) /CSM_Contig/Conti...    36  0.063
Contig-U11711-1 (Contig-U11711-1Q) /CSM_Contig/Conti...    36  0.063
Contig-U12718-1 (Contig-U12718-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U12062-1 (Contig-U12062-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U12055-1 (Contig-U12055-1Q) /CSM_Contig/Conti...    34  0.25

>Contig-U09024-1 (Contig-U09024-1Q) /CSM_Contig/Contig-U09024-1Q.Seq.d
          Length = 889

 Score =  731 bits (369), Expect = 0.0
 Identities = 417/417 (100%)
 Strand = Plus / Plus

                                                                       
Query: 309 tagattatttaccaattattaaaagtaatatatgggatgaatcttatggttggttaacaa 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tagattatttaccaattattaaaagtaatatatgggatgaatcttatggttggttaacaa 368

                                                                       
Query: 369 caattccaaattcggaatcatttgcacagattattggtacaactattaaagaaggaaaag 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 caattccaaattcggaatcatttgcacagattattggtacaactattaaagaaggaaaag 428

                                                                       
Query: 429 acattaaaaagacattatatatactagatccaaaacaattgaaagaatcattcaatttat 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 acattaaaaagacattatatatactagatccaaaacaattgaaagaatcattcaatttat 488

                                                                       
Query: 489 taggtttagaccaacaagagaattccatagacaccaatgagatgatatataaaatagaag 548
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 taggtttagaccaacaagagaattccatagacaccaatgagatgatatataaaatagaag 548

                                                                       
Query: 549 aggagatgatgatgcaaggtatcttcaaaattttatttaaattagataagaaaactttag 608
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aggagatgatgatgcaaggtatcttcaaaattttatttaaattagataagaaaactttag 608

                                                                       
Query: 609 aaagcttttgtagagatttaaaaattcaaataaaagatgatatggnnnnnnnnnnttaca 668
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aaagcttttgtagagatttaaaaattcaaataaaagatgatatggnnnnnnnnnnttaca 668

                                                                    
Query: 669 gccggnanttaaatnagcaacaactgnnactgcaggcatagtaccaacaaccnctac 725
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gccggnanttaaatnagcaacaactgnnactgcaggcatagtaccaacaaccnctac 725


 Score =  307 bits (155), Expect = 1e-83
 Identities = 155/155 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataataataaaaacacacaatgagtgaatcagctgtaccagctgacattataatgcaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ataataataaaaacacacaatgagtgaatcagctgtaccagctgacattataatgcaacc 60

                                                                       
Query: 61  atttgcaaaattatcagaagaatcacttaaattagcagttgaatcattaaatgaacttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atttgcaaaattatcagaagaatcacttaaattagcagttgaatcattaaatgaacttaa 120

                                              
Query: 121 aataccaaacacaacattagcatcaaccacagcag 155
           |||||||||||||||||||||||||||||||||||
Sbjct: 121 aataccaaacacaacattagcatcaaccacagcag 155


 Score =  188 bits (95), Expect = 7e-48
 Identities = 95/95 (100%)
 Strand = Plus / Plus

                                                                       
Query: 178 gcagcagcaaccaccatcatcatctacaactaaagaaggtggtgcaactacaactcaaga 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 gcagcagcaaccaccatcatcatctacaactaaagaaggtggtgcaactacaactcaaga 237

                                              
Query: 238 taataaattaactgcaaatggtggaactacagctg 272
           |||||||||||||||||||||||||||||||||||
Sbjct: 238 taataaattaactgcaaatggtggaactacagctg 272


 Score =  178 bits (90), Expect = 7e-45
 Identities = 90/90 (100%)
 Strand = Plus / Plus

                                                                       
Query: 776 atataatagcaccaaaaactaactcaactataatatcaccaccaacagaagcaccatcaa 835
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 atataatagcaccaaaaactaactcaactataatatcaccaccaacagaagcaccatcaa 835

                                         
Query: 836 aaccagcaccaaaaacatcaaaatctcaag 865
           ||||||||||||||||||||||||||||||
Sbjct: 836 aaccagcaccaaaaacatcaaaatctcaag 865


>Contig-U14010-1 (Contig-U14010-1Q) /CSM_Contig/Contig-U14010-1Q.Seq.d
          Length = 1065

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 816 accaacagaagcaccatcaaaa 837
           ||||||||||||||||||||||
Sbjct: 118 accaacagaagcaccatcaaaa 139


>Contig-U12527-1 (Contig-U12527-1Q) /CSM_Contig/Contig-U12527-1Q.Seq.d
          Length = 2026

 Score = 38.2 bits (19), Expect = 0.016
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 572  ttcaaaattttatttaaat 590
            |||||||||||||||||||
Sbjct: 1335 ttcaaaattttatttaaat 1353


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,267
Number of Sequences: 6905
Number of extensions: 15267
Number of successful extensions: 2177
Number of sequences better than 10.0: 236
length of query: 889
length of database: 5,674,871
effective HSP length: 16
effective length of query: 873
effective length of database: 5,564,391
effective search space: 4857713343
effective search space used: 4857713343
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.14
Homology vs DNA 
Query= Contig-U09024-1 (Contig-U09024-1Q) /CSM_Contig/Contig-U09024-1Q.Seq.d
         (889 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ388098) Dictyostelium discoideum cDNA clone:dds7l24, 5' e...   615   0.0    3
(BJ399890) Dictyostelium discoideum cDNA clone:dds7l24, 3' e...    82   3e-23  2
(AM433486) Vitis vinifera contig VV78X158748.2, whole genome...    40   0.029  2
(ER938888) AF__Bb0030G01f AF__Bb Aquilegia formosa genomic, ...    40   0.11   2
(CZ507778) GMW2-63J8a.g1 GMW2 Glycine max genomic, genomic s...    44   0.14   2
(AC223046) Bos taurus clone CH240-430O14, WORKING DRAFT SEQU...    50   0.14   1
(AC169593) Bos taurus clone CH240-207I23, WORKING DRAFT SEQU...    50   0.14   1
(AM437561) Vitis vinifera contig VV78X271076.15, whole genom...    34   0.35   2
(AM467718) Vitis vinifera contig VV78X233328.4, whole genome...    34   0.37   2
(ED768398) GM_WBb0142F05.f GM_WBb Glycine max genomic clone ...    44   0.45   2
(EJ865900) 1093018277002 Global-Ocean-Sampling_GS-30-02-01-1...    36   0.52   2
(CT997814) Zebrafish DNA sequence from clone DKEY-230I19 in ...    48   0.57   1
(AC184345) Strongylocentrotus purpuratus clone R3-45E24, WOR...    48   0.57   1
(AZ156434) SP_0045_A2_C12_T7 Strongylocentrotus purpuratus, ...    48   0.57   1
(AE002120) Ureaplasma parvum serovar 3 str. ATCC 700970 sect...    38   0.65   3
(AM451152) Vitis vinifera contig VV78X013054.24, whole genom...    42   0.73   4
(AC073199) Homo sapiens chromosome 6 clone RP11-252E4, WORKI...    40   1.0    3
(DT789904) 126505498 TL1 Tribolium castaneum cDNA clone 43K1...    32   1.1    3
(DH555411) Rattus norvegicus DNA, BAC clone: RNB1-065G09, 3'...    34   2.0    3
(AE014836) Plasmodium falciparum 3D7 chromosome 11 section 1...    38   2.0    6
(DQ369745) Brassica rapa subsp. pekinensis clone KBrH1006H12...    36   2.1    8
(CR382298) Zebrafish DNA sequence from clone DKEY-25J19 in l...    46   2.3    1
(AM472018) Vitis vinifera contig VV78X026033.15, whole genom...    46   2.3    1
(AC204714) Zea mays chromosome 8 clone CH201-271F7; ZMMBBc02...    46   2.3    1
(FI015949) CHO_OF6919xi08r1.ab1 CHO_OF6 Nicotiana tabacum ge...    46   2.3    1
(ER993376) ZMMBHm0003D22.f ZMMBHm Zea mays genomic clone ZMM...    46   2.3    1
(EI351839) GM_WBc0100O17.r GM_WBc Glycine max genomic clone ...    46   2.3    1
(EI342486) GM_WBc0086O09.f GM_WBc Glycine max genomic clone ...    46   2.3    1
(EI315253) GM_WBc0048D05.r GM_WBc Glycine max genomic clone ...    46   2.3    1
(ED756589) GM_WBb0125F12.r GM_WBb Glycine max genomic clone ...    46   2.3    1
(ED755760) GM_WBb0124C20.r GM_WBb Glycine max genomic clone ...    46   2.3    1
(ED696171) GM_WBb0035K06.f GM_WBb Glycine max genomic clone ...    46   2.3    1
(DW105480) CLRX3306.b1_C12.ab1 CLR(XYZ) lettuce serriola Lac...    46   2.3    1
(CP000396) Borrelia afzelii PKo plasmid lp60, complete seque...    36   2.3    5
(AC162131) Loxodonta africana clone VMRC15-274C6, WORKING DR...    36   2.7    3
(AC148308) Pan troglodytes BAC clone RP43-40K14 from chromos...    40   3.3    4
(AC175022) Loxodonta africana clone VMRC15-76F13, WORKING DR...    38   5.4    4
(EJ446215) 1093015334648 Global-Ocean-Sampling_GS-28-01-01-1...    42   5.4    2
(ER470299) 1092963950513 Global-Ocean-Sampling_GS-35-01-01-1...    36   6.2    2
(AZ332542) 1M0061N04F Mouse 10kb plasmid UUGC1M library Mus ...    38   6.2    2
(AC116989) Dictyostelium discoideum chromosome 2 map 4545040...    34   6.3    4
(ED133952) AUAC-aak81d12.b1 Ascaris suum whole genome shotgu...    40   6.7    2
(CW705645) AIAA-aab58d10.b1 Ancylostoma caninum whole genome...    34   6.7    2
(EJ055230) 1095456022351 Global-Ocean-Sampling_GS-26-01-01-1...    38   6.9    2
(EK292889) 1095462336497 Global-Ocean-Sampling_GS-31-01-01-1...    36   6.9    2
(BV328942) S241P6138FE12.T0 IndiaGrayWolf Canis lupus STS ge...    44   8.9    1
(EU450800) Glycine max NB-LRR type disease resistance protei...    44   8.9    1
(EF623860) Glycine max cultivar Williams 82 clone 77G7-b, co...    44   8.9    1
(AM472622) Vitis vinifera contig VV78X048853.5, whole genome...    44   8.9    1
(AC170861) Glycine max clone gmw1-60n23, complete sequence.        44   8.9    1
(AC166742) Glycine max clone gmw1-45m6, complete sequence.         44   8.9    1
(EA275289) Sequence 182 from patent US 7256323.                    44   8.9    1
(AC079203) Homo sapiens chromosome 15, clone RP11-1084A12, c...    44   8.9    1
(AC021822) Homo sapiens chromosome 15, clone RP11-122P18, co...    44   8.9    1
(AC147729) Oryctolagus cuniculus clone LB1-54I6, WORKING DRA...    44   8.9    1
(AC115365) Rattus norvegicus clone CH230-25P9, WORKING DRAFT...    44   8.9    1
(CU914317) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.9    1
(AC079188) Homo sapiens chromosome 18 clone RP11-412E10 map ...    44   8.9    1
(CR940348) Theileria annulata genomic DNA chromosome 2.            44   8.9    1
(AC173959) Glycine max clone gmw1-27d20, WORKING DRAFT SEQUE...    44   8.9    1
(BH405685) Gm_UMb001_112_K14_R UMN Soybean BAC Library (pECS...    44   8.9    1
(BH405622) Gm_UMb001_089_D06_R UMN Soybean BAC Library (pECS...    44   8.9    1
(BH141228) Gm_UMb001_059_G16F UMN Soybean BAC Library (pECSB...    44   8.9    1
(BH130407) Gm_UMb001_134_G15_F UMN Soybean BAC Library (pECS...    44   8.9    1
(ER966253) SOOAU08JR LargeInsertSoybeanGenLibBuild4 Glycine ...    44   8.9    1
(ER966076) SOOAO83JR LargeInsertSoybeanGenLibBuild4 Glycine ...    44   8.9    1
(ER965865) SOOAP03JR LargeInsertSoybeanGenLibBuild4 Glycine ...    44   8.9    1
(ER965591) SOOAL41JR LargeInsertSoybeanGenLibBuild4 Glycine ...    44   8.9    1
(ER965572) SOOAL76JR LargeInsertSoybeanGenLibBuild4 Glycine ...    44   8.9    1
(ER965072) SOOA020JR LargeInsertSoybeanGenLibBuild4 Glycine ...    44   8.9    1
(ER965071) SOOA208JR LargeInsertSoybeanGenLibBuild4 Glycine ...    44   8.9    1
(ER964178) SOOAS95TF LargeInsertSoybeanGenLibBuild4 Glycine ...    44   8.9    1
(ER964163) SOOAT46TF LargeInsertSoybeanGenLibBuild4 Glycine ...    44   8.9    1
(ER964097) SOOAU19TF LargeInsertSoybeanGenLibBuild4 Glycine ...    44   8.9    1
(ER963878) SOOAO32TF LargeInsertSoybeanGenLibBuild4 Glycine ...    44   8.9    1
(ER963819) SOOAP53TF LargeInsertSoybeanGenLibBuild4 Glycine ...    44   8.9    1
(ER963433) SOOAN50TF LargeInsertSoybeanGenLibBuild4 Glycine ...    44   8.9    1
(ER963076) SOOA022TF LargeInsertSoybeanGenLibBuild4 Glycine ...    44   8.9    1
(ER962779) SOOAF16TF LargeInsertSoybeanGenLibBuild4 Glycine ...    44   8.9    1
(ER962385) SOOA766TF LargeInsertSoybeanGenLibBuild4 Glycine ...    44   8.9    1
(EK424909) 1095516005539 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.9    1
(EI365619) GM_WBc0120O17.f GM_WBc Glycine max genomic clone ...    44   8.9    1
(EI365495) GM_WBc0120M01.r GM_WBc Glycine max genomic clone ...    44   8.9    1
(EI365494) GM_WBc0120M01.f GM_WBc Glycine max genomic clone ...    44   8.9    1
(EI365212) GM_WBc0120G01.r GM_WBc Glycine max genomic clone ...    44   8.9    1
(EI365179) GM_WBc0120F09.f GM_WBc Glycine max genomic clone ...    44   8.9    1
(EI364863) GM_WBc0119N22.f GM_WBc Glycine max genomic clone ...    44   8.9    1
(EI364856) GM_WBc0119N18.r GM_WBc Glycine max genomic clone ...    44   8.9    1
(EI364625) GM_WBc0119I11.r GM_WBc Glycine max genomic clone ...    44   8.9    1
(EI364616) GM_WBc0119I07.f GM_WBc Glycine max genomic clone ...    44   8.9    1
(EI364568) GM_WBc0119H05.f GM_WBc Glycine max genomic clone ...    44   8.9    1
(EI364557) GM_WBc0119G21.r GM_WBc Glycine max genomic clone ...    44   8.9    1
(EI364432) GM_WBc0119E02.f GM_WBc Glycine max genomic clone ...    44   8.9    1
(EI364424) GM_WBc0119D20.r GM_WBc Glycine max genomic clone ...    44   8.9    1
(EI364220) GM_WBc0118O20.r GM_WBc Glycine max genomic clone ...    44   8.9    1
(EI364175) GM_WBc0118N21.r GM_WBc Glycine max genomic clone ...    44   8.9    1
(EI363634) GM_WBc0118C01.f GM_WBc Glycine max genomic clone ...    44   8.9    1
(EI363628) GM_WBc0118B22.f GM_WBc Glycine max genomic clone ...    44   8.9    1
(EI363484) GM_WBc0117O12.f GM_WBc Glycine max genomic clone ...    44   8.9    1
(EI363335) GM_WBc0117L03.f GM_WBc Glycine max genomic clone ...    44   8.9    1

>(BJ388098) Dictyostelium discoideum cDNA clone:dds7l24, 5' end,
           single read.
          Length = 654

 Score =  615 bits (310), Expect(3) = 0.0
 Identities = 310/310 (100%)
 Strand = Plus / Plus


Query: 342 gggatgaatcttatggttggttaacaacaattccaaattcggaatcatttgcacagatta 401
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gggatgaatcttatggttggttaacaacaattccaaattcggaatcatttgcacagatta 401


Query: 402 ttggtacaactattaaagaaggaaaagacattaaaaagacattatatatactagatccaa 461
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ttggtacaactattaaagaaggaaaagacattaaaaagacattatatatactagatccaa 461


Query: 462 aacaattgaaagaatcattcaatttattaggtttagaccaacaagagaattccatagaca 521
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aacaattgaaagaatcattcaatttattaggtttagaccaacaagagaattccatagaca 521


Query: 522 ccaatgagatgatatataaaatagaagaggagatgatgatgcaaggtatcttcaaaattt 581
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ccaatgagatgatatataaaatagaagaggagatgatgatgcaaggtatcttcaaaattt 581


Query: 582 tatttaaattagataagaaaactttagaaagcttttgtagagatttaaaaattcaaataa 641
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tatttaaattagataagaaaactttagaaagcttttgtagagatttaaaaattcaaataa 641


Query: 642 aagatgatat 651
           ||||||||||
Sbjct: 642 aagatgatat 651

 Score =  248 bits (125), Expect(3) = 0.0
 Identities = 125/125 (100%)
 Strand = Plus / Plus


Query: 1   ataataataaaaacacacaatgagtgaatcagctgtaccagctgacattataatgcaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ataataataaaaacacacaatgagtgaatcagctgtaccagctgacattataatgcaacc 60


Query: 61  atttgcaaaattatcagaagaatcacttaaattagcagttgaatcattaaatgaacttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atttgcaaaattatcagaagaatcacttaaattagcagttgaatcattaaatgaacttaa 120


Query: 121 aatac 125
           |||||
Sbjct: 121 aatac 125

 Score =  167 bits (84), Expect(3) = 0.0
 Identities = 84/84 (100%)
 Strand = Plus / Plus


Query: 189 caccatcatcatctacaactaaagaaggtggtgcaactacaactcaagataataaattaa 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 caccatcatcatctacaactaaagaaggtggtgcaactacaactcaagataataaattaa 248


Query: 249 ctgcaaatggtggaactacagctg 272
           ||||||||||||||||||||||||
Sbjct: 249 ctgcaaatggtggaactacagctg 272

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 806,111,056
Number of extensions: 52151615
Number of successful extensions: 4657960
Number of sequences better than 10.0: 547
Length of query: 889
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 865
Effective length of database: 97,308,875,965
Effective search space: 84172177709725
Effective search space used: 84172177709725
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.25
Homology vs Protein 
Query= Contig-U09024-1 (Contig-U09024-1Q) /CSM_Contig/Contig-U09024-1Q.Seq.d
         (889 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54FU3) RecName: Full=Uncharacterized protein DDB_G0290587;          333   5e-90

>(Q54FU3) RecName: Full=Uncharacterized protein DDB_G0290587;
          Length = 732

 Score =  333 bits (854), Expect = 5e-90
 Identities = 176/211 (83%), Positives = 176/211 (83%)
 Frame = +2

Query: 20  MSESAVPADIIMQPFAKLSEESLKLAVESLNELKIPNTTLASTTAEXXXXXXXXXXPPSS 199
           MSESAVPADIIMQPFAKLSEESLKLAVESLNELKIPNTTLASTTAE          PPSS
Sbjct: 1   MSESAVPADIIMQPFAKLSEESLKLAVESLNELKIPNTTLASTTAEQQQQQQQQQQPPSS 60

Query: 200 STTKEGGATTTQDNKLXXXXXXXXXXXXXKPMVINKLDYLPIIKSNIWDESYGWLTTIPN 379
           STTKEGGATTTQDNKL             KPMVINKLDYLPIIKSNIWDESYGWLTTIPN
Sbjct: 61  STTKEGGATTTQDNKLTANGGTTADNNNNKPMVINKLDYLPIIKSNIWDESYGWLTTIPN 120

Query: 380 SESFAQIIGTTIKEGKDIKKTLYILDPKQLKESFNLLGLDQQENSIDTNXXXXXXXXXXX 559
           SESFAQIIGTTIKEGKDIKKTLYILDPKQLKESFNLLGLDQQENSIDTN
Sbjct: 121 SESFAQIIGTTIKEGKDIKKTLYILDPKQLKESFNLLGLDQQENSIDTNEMIYKIEEEMM 180

Query: 560 XQGIFKILFKLDKKTLESFCRDLKIQIKDDM 652
            QGIFKILFKLDKKTLESFCRDLKIQIKDDM
Sbjct: 181 MQGIFKILFKLDKKTLESFCRDLKIQIKDDM 211

 Score = 51.2 bits (121), Expect = 5e-05
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +1

Query: 796 NSTIISPPTEAPSKPAPKTSKSQA 867
           NSTIISPPTEAPSKPAPKTSKSQA
Sbjct: 384 NSTIISPPTEAPSKPAPKTSKSQA 407

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 829,903,555
Number of extensions: 12646269
Number of successful extensions: 35834
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35816
Number of HSP's successfully gapped: 2
Length of query: 296
Length of database: 1,040,966,779
Length adjustment: 127
Effective length of query: 169
Effective length of database: 634,022,584
Effective search space: 107149816696
Effective search space used: 107149816696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.79  gvh: 0.45  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U09024-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0