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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01530-1
Contig ID Contig-U01530-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U01530-1 (Contig-U01530-1Q) /CSM_Contig/Contig-U01530-1Q.Seq.d
CAAACCAAAATATCTTTTTTTATTTTTTGAAATTAAAATTTTAAATATAG
GTGCCATTTGAGAAGCCAAATTGACGTTTCAGAAAAAAATTGGAATTTTA
TTCTCTTTAAAAAAAAAAAAAAAGAATTTCAAAAACACTATTAATAACTT
TTTTTTTTTCATCTTTATCATTCTATTAATTAAGTTTAAACCACACTCAC
ACACACTCACACACCCACTTCCATCTTTGTTAAAAAAAAAAAAAATTAAA
TAAAATTAAAAAAAAAATAAAAATAGAAAAATAAAAATAGAAAAATAAAA
ATAGAAAAAAAAAAATAAAACATATTTTAATTAAATTATTTTTTTTTAAA
TAAGCCTTTTTTTTATTTTTTTCATTTTTTTTATTTTCTATTTTTATATT
TATTTATTTTTTTTTCTTTTAAACAAAAATAAAAATAAAAATAACAAATA
AATTAACACAATAGTTTAATAAATATATAAATAAATAAAATGGGAATTAT
AAATACAAAAAAAAAAAAAAA----------ACATTGAGAGATTGTGAGA
AATGGAATAATAAAGATTTGGTTAAATTAAAGATTAAAAATGGTCAACCA
TTNTTTGGTGATAATAATAATAAAAAAGAGAATTATAACAATTTATCATG
GAAAGATTTTTATAAACAAATGACCAGATTAAAAATGTGTAAACAATGTA
ATATAATTTTTAGAGAATATAGTAATTCAAATAGCGCTTGTAATTATNAT
TCAGATATNAGAGATTTAATTCATTCTCGTGGTGCTCNACCTTNTGGAAT
GTATGGGAGTTGTTGTTTATCAAAACCAAAAAATAGTATTGGTTGTACAA
CAAAGTNTCATGAGGAAGAATAAAAAATTAATATCCCCTTCCATATATAT
ATATAAATAATATAAAAAAAAAAAAAAAATTAAATATAATATAAATTTAA
TTAATTTTTGGAAAAATAAAAATAAATAATTAATTTTTTAAATGTATAAA
TAAAAAAAAAAAAAAA
Gap gap included
Contig length 1006
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 6376859
End point 6377867
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 3
Link to clone list U01530
List of clone(s) 

est1=SSB141F,1,321
est2=SSB890E,82,522
est3=SSB141Z,523,1008
Translated Amino Acid sequence 
qtkisffif*n*nfkyrchlrsqidvseknwnfilfkkkkkefqkhy**lfffhlyhsin
*v*ttlththtptsifvkkkkn*iklkkk*k*knknrkikiekkk*nif*lnyfflnkpf
fyffhffyflflylfiffsfkqk*k*k*qin*hnslini*INKMGIINTKKKK---

---TLRDCEKWNNKDLVKLKIKNGQPXFGDNNNKKENYNNLSWKDFYKQMTRLKMCKQCN
IIFREYSNSNSACNYXSDXRDLIHSRGAXPXGMYGSCCLSKPKNSIGCTTKXHEEE*kin
ipfhiyi*ii*kkkkn*i*ykfn*flek*k*iinflnv*ikkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
qtkisffif*n*nfkyrchlrsqidvseknwnfilfkkkkkefqkhy**lfffhlyhsin
*v*ttlththtptsifvkkkkn*iklkkk*k*knknrkikiekkk*nif*lnyfflnkpf
fyffhffyflflylfiffsfkqk*k*k*qin*hnslini*INKMGIINTKKKK---

---TLRDCEKWNNKDLVKLKIKNGQPXFGDNNNKKENYNNLSWKDFYKQMTRLKMCKQCN
IIFREYSNSNSACNYXSDXRDLIHSRGAXPXGMYGSCCLSKPKNSIGCTTKXHEEE*kin
ipfhiyi*ii*kkkkn*i*ykfn*flek*k*iinflnv*ikkkk

Frame B:
kpkylflffeikilnigai*eakltfqkkigilfslkkkkknfkntinnffffifiilli
kfkphshtlthplpsllkkkkik*n*kknknrkikiek*k*kkknktyfn*iiff*islf
fiffiffifyfyiylfffllnknknknnk*intiv**iyk*ikwel*iqkkkk---

---h*eivrngiikiwln*rlkmvnhxlviiiikkriitiyhgkifink*pd*kcvnnvi
*fleniviqialvixiqixei*filvvlxlxecmgvvvyqnqkivlvvqqsxmrknkkli
spsiyiyk*ykkkkkikyninlinfwknknk*lif*myk*kkkk

Frame C:
nqniffyflklkf*i*vpfekpn*rfrkklefysl*kkkkrisktllitfffsslsfy*l
slnhththshthfhlc*kkkklnkikkkikiek*k*knknrkkkikhiliklfffk*aff
lffsfflfsififiyffff*tkikikitnkltq*fnkyink*ngnykykkkkk---

---ierl*eme**rfg*ikd*kwstixw*****krel*qfimerfl*tndqiknv*tm*y
nf*ri**fk*rl*lxfryxrfnsfswcstxwnvwellfiktkk*ywlynkvs*grikn*y
plpyiyinnikkkkklnii*i*lifgkikinn*ffkcinkkkkk
own update 2004. 6. 7
Homology vs CSM-cDNA 
Query= Contig-U01530-1 (Contig-U01530-1Q)
/CSM_Contig/Contig-U01530-1Q.Seq.d
         (1016 letters)

Database: CSM
           8361 sequences; 7,895,291 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01530-1 (Contig-U01530-1Q) /CSM_Contig/Conti...   680  0.0
Contig-U11867-1 (Contig-U11867-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U11877-1 (Contig-U11877-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U14896-1 (Contig-U14896-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U13982-1 (Contig-U13982-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U12082-1 (Contig-U12082-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U11534-1 (Contig-U11534-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U08180-1 (Contig-U08180-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U06379-1 (Contig-U06379-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U05275-1 (Contig-U05275-1Q) /CSM_Contig/Conti...    38  0.025

>Contig-U01530-1 (Contig-U01530-1Q) /CSM_Contig/Contig-U01530-1Q.Seq.d
          Length = 1016

 Score =  680 bits (343), Expect = 0.0
 Identities = 361/361 (100%)
 Strand = Plus / Plus

                                                                       
Query: 532 acattgagagattgtgagaaatggaataataaagatttggttaaattaaagattaaaaat 591
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 acattgagagattgtgagaaatggaataataaagatttggttaaattaaagattaaaaat 591

                                                                       
Query: 592 ggtcaaccattntttggtgataataataataaaaaagagaattataacaatttatcatgg 651
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ggtcaaccattntttggtgataataataataaaaaagagaattataacaatttatcatgg 651

                                                                       
Query: 652 aaagatttttataaacaaatgaccagattaaaaatgtgtaaacaatgtaatataattttt 711
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 aaagatttttataaacaaatgaccagattaaaaatgtgtaaacaatgtaatataattttt 711

                                                                       
Query: 712 agagaatatagtaattcaaatagcgcttgtaattatnattcagatatnagagatttaatt 771
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 agagaatatagtaattcaaatagcgcttgtaattatnattcagatatnagagatttaatt 771

                                                                       
Query: 772 cattctcgtggtgctcnaccttntggaatgtatgggagttgttgtttatcaaaaccaaaa 831
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 cattctcgtggtgctcnaccttntggaatgtatgggagttgttgtttatcaaaaccaaaa 831

                                                                       
Query: 832 aatagtattggttgtacaacaaagtntcatgaggaagaataaaaaattaatatccccttc 891
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 aatagtattggttgtacaacaaagtntcatgaggaagaataaaaaattaatatccccttc 891

            
Query: 892 c 892
           |
Sbjct: 892 c 892


 Score =  117 bits (59), Expect = 3e-26
 Identities = 73/80 (91%)
 Strand = Plus / Plus

                                                                       
Query: 29  gaaattaaaattttaaatataggtgccatttgagaagccaaattgacgtttcagnnnnnn 88
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 29  gaaattaaaattttaaatataggtgccatttgagaagccaaattgacgtttcagaaaaaa 88

                               
Query: 89  nttggaattttattctcttt 108
            |||||||||||||||||||
Sbjct: 89  attggaattttattctcttt 108


 Score = 69.9 bits (35), Expect = 7e-12
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                       
Query: 124 gaatttcaaaaacactattaataacnnnnnnnnnnncatctttatcattctattaattaa 183
           |||||||||||||||||||||||||           ||||||||||||||||||||||||
Sbjct: 124 gaatttcaaaaacactattaataactttttttttttcatctttatcattctattaattaa 183

                   
Query: 184 gtttaaac 191
           ||||||||
Sbjct: 184 gtttaaac 191


 Score = 36.2 bits (18), Expect = 0.10
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 321 catattttaattaaatta 338
           ||||||||||||||||||
Sbjct: 321 catattttaattaaatta 338


 Score = 34.2 bits (17), Expect = 0.40
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 215 ccacttccatctttgtt 231
           |||||||||||||||||
Sbjct: 215 ccacttccatctttgtt 231


>Contig-U11867-1 (Contig-U11867-1Q) /CSM_Contig/Contig-U11867-1Q.Seq.d
          Length = 2567

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 606 tggtgataataataataaaaa 626
           |||||||||||||||||||||
Sbjct: 104 tggtgataataataataaaaa 84


>Contig-U11877-1 (Contig-U11877-1Q) /CSM_Contig/Contig-U11877-1Q.Seq.d
          Length = 3029

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 612  taataataataaaaaagaga 631
            ||||||||||||||||||||
Sbjct: 2981 taataataataaaaaagaga 3000


  Database: CSM
    Posted date:  Jun 7, 2004  8:33 AM
  Number of letters in database: 7,895,291
  Number of sequences in database:  8361
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 33,490
Number of Sequences: 8361
Number of extensions: 33490
Number of successful extensions: 12465
Number of sequences better than 10.0: 986
length of query: 1016
length of database: 7,895,291
effective HSP length: 16
effective length of query: 1000
effective length of database: 7,761,515
effective search space: 7761515000
effective search space used: 7761515000
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 4.30
Homology vs DNA 
Query= Contig-U01530-1 (Contig-U01530-1Q) /CSM_Contig/Contig-U01530-1Q.Seq.d
         (1016 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...   617   0.0    6
(AU051837) Dictyostelium discoideum slug cDNA, clone SSB141.      632   e-177  1
(AU071289) Dictyostelium discoideum slug cDNA, clone SSB141.      159   1e-81  4
(AU071611) Dictyostelium discoideum slug cDNA, clone SSB890.      143   4e-49  3
(AU036971) Dictyostelium discoideum slug cDNA, clone SSB890.      109   7e-23  2
(AC139968) Rattus norvegicus clone CH230-378B4, *** SEQUENCI...    56   0.003  1
(AC121684) Rattus norvegicus clone CH230-42I15, *** SEQUENCI...    56   0.003  1
(AC120932) Rattus norvegicus clone CH230-247H16, *** SEQUENC...    56   0.003  1
(AC102958) Rattus norvegicus clone CH230-38F21, WORKING DRAF...    56   0.003  1
(AC219321) Bos taurus clone CH240-336O19, WORKING DRAFT SEQU...    56   0.003  1
(AC130561) Rattus norvegicus  BAC CH230-161F3 (Children's Ho...    48   0.008  2
(AC122632) Rattus norvegicus clone CH230-136C2, *** SEQUENCI...    54   0.010  5
(AC135310) Rattus norvegicus clone CH230-11C16, WORKING DRAF...    54   0.011  1
(AC129114) Rattus norvegicus clone CH230-251F22, WORKING DRA...    54   0.011  1
(AC125864) Rattus norvegicus clone CH230-9L24, *** SEQUENCIN...    54   0.011  1
(AC118348) Rattus norvegicus chromosome 18 clone CH230-221G1...    54   0.011  1
(AC116063) Rattus norvegicus clone CH230-137P24, WORKING DRA...    54   0.011  1
(AC113709) Rattus norvegicus clone CH230-55C1, *** SEQUENCIN...    54   0.011  1
(AC105625) Rattus norvegicus clone CH230-117O17, WORKING DRA...    54   0.011  1
(AC105551) Rattus norvegicus clone CH230-191O4, *** SEQUENCI...    54   0.011  1
(AC097804) Rattus norvegicus clone CH230-23O10, *** SEQUENCI...    54   0.011  1
(AC095338) Rattus norvegicus clone CH230-114A11, *** SEQUENC...    54   0.011  1
(AC173928) Atelerix albiventris clone LB4-41C10, WORKING DRA...    54   0.011  1
(BX005074) Zebrafish DNA sequence from clone CH211-146J7 in ...    38   0.020  6
(AY160091) Dictyostelium discoideum nucleotide exchange fact...    46   0.021  2
(AL928946) Zebrafish DNA sequence from clone CH211-265D20 in...    48   0.024  4
(AC148569) Sorex araneus clone SA_Ba-85J11, WORKING DRAFT SE...    50   0.025  4
(AC123478) Rattus norvegicus clone CH230-57D24, *** SEQUENCI...    46   0.026  2
(AC097669) Rattus norvegicus clone CH230-167A15, *** SEQUENC...    48   0.027  2
(AL928926) Mouse DNA sequence from clone RP23-443G7 on chrom...    36   0.027  2
(AC212037) Solanum tuberosum chromosome 6 clone RHPOTKEY082H...    38   0.028  2
(AC217039) Solanum tuberosum chromosome 6 clone RHPOTKEY177L...    38   0.028  2
(AC156552) Mus musculus chromosome 3, clone RP24-271K21, com...    48   0.031  2
(CU467648) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.034  4
(AC020699) Homo sapiens BAC clone RP11-131K17 from 4, comple...    46   0.037  4
(DH484440) Monosiga ovata DNA, fosmid clone: MOF-040C24, gen...    46   0.040  2
(BX187840) Danio rerio genomic clone DKEY-191O20, genomic su...    42   0.041  2
(GF032660) pRRL2:Newb:20080411:412634 USMARC Pig Breed SNP D...    52   0.043  1
(AC153357) Mus musculus BAC clone RP24-124N8 from chromosome...    52   0.043  1
(AC140381) Mus musculus BAC clone RP23-176M4 from 10, comple...    52   0.043  1
(AC126668) Mus musculus BAC clone RP24-370N20 from chromosom...    52   0.043  1
(AC128747) Rattus norvegicus clone CH230-454D21, WORKING DRA...    52   0.043  1
(AC123459) Rattus norvegicus clone CH230-41G8, *** SEQUENCIN...    52   0.043  1
(AC117137) Rattus norvegicus clone CH230-385F19, *** SEQUENC...    52   0.043  1
(AC110309) Rattus norvegicus clone CH230-144A3, WORKING DRAF...    52   0.043  1
(AC099095) Rattus norvegicus clone CH230-151O24, WORKING DRA...    52   0.043  1
(AC098081) Rattus norvegicus clone CH230-127M18, *** SEQUENC...    52   0.043  1
(FP236519) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    52   0.043  1
(CT118877) Sus scrofa genomic clone PigE-114G20, genomic sur...    52   0.043  1
(CR892246) Sus scrofa BES.                                         52   0.043  1
(BX276126) Zebrafish DNA sequence from clone CH211-232L22 in...    38   0.051  5
(AM464996) Vitis vinifera contig VV78X071696.3, whole genome...    42   0.059  3
(AC121213) Rattus norvegicus clone CH230-302H2, *** SEQUENCI...    46   0.070  3
(AC115682) Dictyostelium discoideum chromosome 2 map 4101105...    46   0.072  4
(AC107607) Rattus norvegicus clone CH230-205J5, *** SEQUENCI...    46   0.073  3
(AZ272675) RPCI-23-104K6.TV RPCI-23 Mus musculus genomic clo...    46   0.090  2
(AC157856) Atelerix albiventris clone LB4-510L14, WORKING DR...    46   0.093  2
(AC125452) Mus musculus, clone RP23-43F6, complete sequence.       42   0.099  5
(AC095243) Rattus norvegicus clone CH230-10E12, *** SEQUENCI...    46   0.100  2
(CR318601) Zebrafish DNA sequence from clone CH211-274E20 in...    36   0.10   2
(CR293503) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   0.10   2
(BX571680) Zebrafish DNA sequence from clone DKEY-30L20 in l...    36   0.10   2
(CR388102) Zebrafish DNA sequence from clone DKEY-26C10 in l...    40   0.10   7
(BX276115) Zebrafish DNA sequence from clone DKEY-274M17 in ...    44   0.11   4
(AC100325) Mus musculus clone RP23-125F15, LOW-PASS SEQUENCE...    40   0.12   3
(EB225151) PEG002-C-106580-501 Normalized Pedal-Pleural Gang...    42   0.12   2
(CR456625) Zebrafish DNA sequence from clone DKEY-76G24 in l...    38   0.12   8
(AL591390) Mouse DNA sequence from clone RP23-355L10 on chro...    48   0.12   2
(DX089113) AU_BAC023A2B10_Sp6 CHORI212 Ictalurus punctatus g...    44   0.12   2
(ET059551) MUGQ_CH252P355G24Sp6_CP665_090 CHORI-252 Vervet M...    36   0.13   2
(FI092135) MUGQ_CH252P368K24T7_CP692_086 CHORI-252 Vervet Mo...    36   0.13   2
(CX499753) JGI_XZG31368.fwd NIH_XGC_tropGas7 Xenopus (Silura...    38   0.13   2
(AC119308) Rattus norvegicus clone CH230-172K17, WORKING DRA...    48   0.15   2
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    32   0.15   6
(AL954314) Zebrafish DNA sequence from clone XX-162M2 in lin...    48   0.15   3
(AC079556) Mus musculus clone RP23-446D24, WORKING DRAFT SEQ...    40   0.16   4
(CU407166) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.16   4
(AC124309) Homo sapiens chromosome 15, clone RP11-41H23, com...    48   0.17   5
(AM168271) Zosterops lateralis chlorocephala microsatellite ...    50   0.17   1
(AM168270) Zosterops lateralis chlorocephala microsatellite ...    50   0.17   1
(BV042720) S212P60283FC6.T0 CZECHII/Ei Mus musculus STS geno...    50   0.17   1
(AL645602) Mouse DNA sequence from clone RP23-79E13 on chrom...    50   0.17   1
(AL591131) Mouse DNA sequence from clone RP23-151A11 on chro...    50   0.17   1
(AC174679) Mus musculus BAC clone CH36-470B20 from chromosom...    50   0.17   1
(AC157800) Mus musculus chromosome 1, clone RP24-286C21, com...    50   0.17   1
(AC157093) Mus musculus 6 BAC RP24-338D12 (Roswell Park Canc...    50   0.17   1
(AC148610) Mus musculus chromosome 17, clone RP24-260D18, co...    50   0.17   1
(AC134528) Mus musculus BAC clone RP24-502G8 from chromosome...    50   0.17   1
(AC126928) Mus musculus BAC clone RP24-337I23 from chromosom...    50   0.17   1
(AC125466) Mus musculus BAC clone RP23-477O24 from chromosom...    50   0.17   1
(AC117241) Mus musculus BAC clone RP24-147H15 from chromosom...    50   0.17   1
(AC107795) Mus musculus chromosome 1, clone RP23-433P9, comp...    50   0.17   1
(AC002324) Mus musculus chromosome 11, clone 475_H_14, compl...    50   0.17   1
(AC162732) Loxodonta africana clone VMRC15-180G16, WORKING D...    50   0.17   1
(AC155019) Bos taurus clone CH240-35B4, WORKING DRAFT SEQUEN...    50   0.17   1
(AC153358) Mus musculus chromosome 10 clone RP23-475N12, WOR...    50   0.17   1
(AC141176) Rattus norvegicus clone CH230-428G14, WORKING DRA...    50   0.17   1
(AC130621) Rattus norvegicus clone CH230-204D11, WORKING DRA...    50   0.17   1
(AC128953) Rattus norvegicus clone CH230-505N21, WORKING DRA...    50   0.17   1
(AC128511) Rattus norvegicus clone CH230-105B5, *** SEQUENCI...    50   0.17   1
(AC128329) Rattus norvegicus clone CH230-211O5, WORKING DRAF...    50   0.17   1
(AC125661) Rattus norvegicus clone CH230-160L21, *** SEQUENC...    50   0.17   1
(AC123329) Rattus norvegicus clone CH230-274A22, *** SEQUENC...    50   0.17   1
(AC121487) Rattus norvegicus clone CH230-46I4, WORKING DRAFT...    50   0.17   1
(AC119462) Rattus norvegicus clone CH230-28N16, WORKING DRAF...    50   0.17   1
(AC119335) Rattus norvegicus clone CH230-239K16, *** SEQUENC...    50   0.17   1
(AC110845) Rattus norvegicus clone CH230-320L8, *** SEQUENCI...    50   0.17   1
(AC110828) Rattus norvegicus clone CH230-213F24, *** SEQUENC...    50   0.17   1
(AC098608) Rattus norvegicus clone CH230-149B18, *** SEQUENC...    50   0.17   1
(AC098491) Rattus norvegicus clone CH230-16I9, WORKING DRAFT...    50   0.17   1
(AC096908) Rattus norvegicus clone CH230-82K24, WORKING DRAF...    50   0.17   1
(AC096475) Rattus norvegicus clone CH230-53F8, WORKING DRAFT...    50   0.17   1
(CU606988) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.17   1
(AC044838) Mus musculus chromosome 11 clone RP23-65B3 map 11...    50   0.17   1
(CU407201) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.17   1
(AL606531) Mouse DNA sequence *** SEQUENCING CANCELLED *** f...    50   0.17   1
(AF551762) Mus musculus strain 129/SvJ chromosome 17 clone 5...    50   0.17   1
(AC173915) Oryctolagus cuniculus clone LB1-316F11, WORKING D...    50   0.17   1
(AC172737) Loxodonta africana clone VMRC15-234M3, WORKING DR...    50   0.17   1
(AC166301) Bos taurus clone CH240-174M19, *** SEQUENCING IN ...    50   0.17   1
(AC025584) Mus musculus clone RP23-263C10, WORKING DRAFT SEQ...    50   0.17   1
(AC004591) Mus musculus chromosome 11 clone mCIT.5_M_8 map 1...    50   0.17   1
(DU493260) 1098415740689 CHORI-243 Ovis aries genomic clone ...    50   0.17   1
(CR887652) Sus scrofa BES.                                         50   0.17   1
(EH749155) CNMS8501.b1_I13.ab1 CNM(LMS) spotted knapweed Cen...    50   0.17   1
(EE738447) PMAH-aab46d02.g1 Lamprey_EST_Olfactory Petromyzon...    50   0.17   1
(CB778596) AMGNNUC:NRPI3-00136-B10-A W Rat pituitary (10477)...    50   0.17   1
(CB775708) AMGNNUC:NRPI3-00136-C10-A W Rat pituitary (10477)...    50   0.17   1
(GE206222) CUPO2303.rev CUPO Emiliania huxleyi CCMP1516 F/2 ...    50   0.17   1
(BX323084) Zebrafish DNA sequence from clone DKEYP-9G5 in li...    38   0.21   4
(FP015886) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.21   3
(CT956087) Zebrafish DNA sequence from clone CH73-222K8 in l...    36   0.22   6
(CU656041) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   0.29   4
(AC098067) Rattus norvegicus clone CH230-117H22, WORKING DRA...    40   0.30   3
(AL138904) Human DNA sequence *** SEQUENCING CANCELLED *** f...    42   0.32   2
(AA740677) ob01h11.s1 NCI_CGAP_Kid3 Homo sapiens cDNA clone ...    40   0.32   2
(AC087226) Mus musculus chromosome 16 clone RP23-103M13, WOR...    46   0.34   3
(CU855798) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   0.34   4
(AC097945) Rattus norvegicus clone CH230-178A6, WORKING DRAF...    38   0.34   5
(AC093924) Genomic sequence for Mus musculus, clone RP23-239...    48   0.34   5
(AC109634) Homo sapiens chromosome 17 clone RP11-1008L6 map ...    48   0.36   4
(AC176559) Strongylocentrotus purpuratus clone R3-3076H3, WO...    38   0.36   7
(AC107132) Rattus norvegicus clone CH230-22L2, *** SEQUENCIN...    36   0.37   2
(AC132617) Mus musculus BAC clone RP23-230A6 from chromosome...    46   0.37   2
(AC098599) Rattus norvegicus clone CH230-91B3, WORKING DRAFT...    46   0.37   2
(AC126093) Rattus norvegicus clone CH230-506O15, *** SEQUENC...    38   0.37   2
(AC193048) Echinops telfairi clone CH238-107F5, WORKING DRAF...    36   0.37   2
(AC113766) Rattus norvegicus clone CH230-82D2, WORKING DRAFT...    48   0.37   3
(AC151981) Mus musculus BAC clone RP24-66K3 from chromosome ...    34   0.37   2
(CU606886) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   0.38   2
(AC192881) Echinops telfairi clone CH238-153G14, WORKING DRA...    36   0.38   2
(AC200351) Echinops telfairi clone CH238-322J22, WORKING DRA...    36   0.38   2
(CR293531) Zebrafish DNA sequence from clone DKEY-125H23 in ...    38   0.38   2
(AC183104) Pan troglodytes BAC clone CH251-567E15 from chrom...    46   0.39   4
(AK084938) Mus musculus 13 days embryo lung cDNA, RIKEN full...    48   0.39   2
(AC100518) Mus musculus clone RP23-145K19, LOW-PASS SEQUENCE...    42   0.40   3
(AC004988) Homo sapiens PAC clone RP5-1178G13 from 7, comple...    36   0.40   4
(AL645542) Mouse DNA sequence from clone RP23-468A19 on chro...    46   0.41   2
(AC037481) Homo sapiens chromosome 18 clone RP11-586H24 map ...    36   0.42   5
(AC120820) Rattus norvegicus clone CH230-500H11, WORKING DRA...    48   0.43   2
(AC036139) Homo sapiens chromosome 17 clone RP11-450I19 map ...    40   0.44   4
(AC112588) Rattus norvegicus clone CH230-297K20, *** SEQUENC...    48   0.44   4
(AC109700) Rattus norvegicus clone CH230-228I2, *** SEQUENCI...    46   0.44   5
(CU672249) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.45   2
(AC152161) Mus musculus chromosome 19, clone RP23-162O21, co...    44   0.45   4
(AC073778) Mus musculus clone RP23-387N18, WORKING DRAFT SEQ...    48   0.46   2
(AC153377) Mus musculus 6 BAC RP23-380O16 (Roswell Park Canc...    46   0.47   2
(ED802565) MG__Bb0035K17f MG__Bb Mimulus guttatus genomic, g...    34   0.47   2
(AM479662) Vitis vinifera contig VV78X265283.6, whole genome...    42   0.48   3
(AC032044) Homo sapiens chromosome 17, clone RP11-818O24, co...    46   0.48   2
(BV420060) S229P6450FH12.T0 GermanShepherd Canis familiaris ...    38   0.48   2
(FP108790) Danio rerio EST, clone ZF_invB16j13 3'.                 38   0.49   2
(CT699987) Danio rerio EST, clone ZF_mu_199d06 3'.                 46   0.51   2
(AC091694) Mus musculus Strain C57BL6/J chromosome 11 BAC, R...    46   0.51   2
(BX323598) Zebrafish DNA sequence from clone CH211-196M2 in ...    40   0.52   6
(DV499316) Sa_em0_11d18_5prime Dogfish Shark Embryo-derived ...    46   0.52   2
(CU693490) Zebrafish DNA sequence from clone CH1073-395M9 in...    46   0.52   3
(BX088724) Zebrafish DNA sequence from clone DKEY-15G22.           48   0.53   6
(AC119519) Rattus norvegicus clone CH230-164N15, *** SEQUENC...    46   0.53   2
(AC166201) Oryctolagus cuniculus clone LB1-100L3, WORKING DR...    46   0.53   4
(AC034285) Mus musculus chromosome 13, clone RP23-220G21, co...    48   0.54   4
(BX546473) Zebrafish DNA sequence from clone DKEYP-51F2 in l...    38   0.55   4
(AC144945) Mus musculus BAC clone RP23-334D20 from chromosom...    46   0.56   2
(AC119365) Rattus norvegicus clone CH230-179E16, WORKING DRA...    48   0.56   4
(DU263269) 1098574255625 CHORI-243 Ovis aries genomic clone ...    40   0.58   2
(AC095083) Rattus norvegicus clone CH230-7C9, *** SEQUENCING...    46   0.59   2
(AC158118) Bos taurus clone CH240-48G14, WORKING DRAFT SEQUE...    44   0.60   3
(AL772144) Zebrafish DNA sequence from clone CH211-164J3 in ...    38   0.60   6
(AC125715) Rattus norvegicus clone CH230-19H24, *** SEQUENCI...    48   0.60   2
(BX928740) Zebrafish DNA sequence from clone CH211-245J22 in...    46   0.60   6
(BX936367) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    38   0.60   4
(CT712683) Danio rerio EST, clone ZF_mu_255d01 3'.                 46   0.61   2
(AC122837) Mus musculus BAC clone RP23-189N3 from 16, comple...    36   0.62   5
(AC107239) Mus musculus chromosome 5 clone RP23-411N3 map 5,...    48   0.62   4
(BZ607989) WHAAB85TR Human MCF7 breast cancer cell line libr...    40   0.64   2
(CU914710) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.65   3
(AC215588) Procavia capensis clone CH280-7O21, WORKING DRAFT...    46   0.66   4
(CU929451) Zebrafish DNA sequence from clone CH73-166C6 in l...    48   0.67   1
(CU694269) Zebrafish DNA sequence from clone CH73-169F6 in l...    48   0.67   1
(CU693473) Zebrafish DNA sequence from clone CH1073-193A7.         48   0.67   1
(CT025854) Zebrafish DNA sequence from clone DKEYP-110G5 in ...    48   0.67   1
(BX470200) Zebrafish DNA sequence from clone DKEY-207M2 Cont...    48   0.67   1
(BX465215) Zebrafish DNA sequence from clone DKEY-186M8 in l...    48   0.67   1
(BX276182) Zebrafish DNA sequence from clone CH211-283K4 in ...    48   0.67   1
(AY584505) Squalus acanthias clone J445 microsatellite seque...    48   0.67   1
(AJ504410) Takifugu rubripes egln1 gene (partial), trax gene...    48   0.67   1
(G46236) Z7911_1 Zebrafish AB Danio rerio STS genomic clone ...    48   0.67   1
(BV033694) S212P60278FH10.T0 CZECHII/Ei Mus musculus STS gen...    48   0.67   1
(AU046963) Rattus norvegicus, OTSUKA clone, 107e04, microsat...    48   0.67   1
(AU046843) Rattus norvegicus, OTSUKA clone, 080h03, microsat...    48   0.67   1
(AU025286) Rattus norvegicus, OTSUKA clone, OT68.48/888d04, ...    48   0.67   1
(AB459341) Paralichthys olivaceus DNA, microsatellite: Poli9...    48   0.67   1
(U89744) Rattus norvegicus putative cell surface antigen mRN...    48   0.67   1
(CU210868) Mouse DNA sequence from clone DN-69P21 on chromos...    48   0.67   1
(CT030729) Mouse DNA sequence from clone RP23-74P22 on chrom...    48   0.67   1
(BX883049) Rattus norvegicus chromosome 20, major histocompa...    48   0.67   1
(BX883048) Rattus norvegicus chromosome 20, major histocompa...    48   0.67   1
(BX883043) Rattus norvegicus chromosome 20, major histocompa...    48   0.67   1
(BX883042) Rattus norvegicus chromosome 20, major histocompa...    48   0.67   1
(AL935264) Mouse DNA sequence from clone RP23-118A9 on chrom...    48   0.67   1
(AL928661) Mouse DNA sequence from clone RP23-3E2 on chromos...    48   0.67   1
(AL845457) Mouse DNA sequence from clone RP23-34E24 on chrom...    48   0.67   1
(AL845332) Mouse DNA sequence from clone RP23-326D18 on chro...    48   0.67   1
(AL844511) Mouse DNA sequence from clone RP23-244B6 on chrom...    48   0.67   1
(AL833773) Mouse DNA sequence from clone RP23-434A2 on chrom...    48   0.67   1
(AL808128) Mouse DNA sequence from clone RP23-387C21 on chro...    48   0.67   1
(AL808127) Mouse DNA sequence from clone RP23-263L18 on chro...    48   0.67   1
(AL772176) Mouse DNA sequence from clone RP23-37B18 on chrom...    48   0.67   1
(AL732569) Mouse DNA sequence from clone RP23-215O19 on chro...    48   0.67   1
(AL732504) Mouse DNA sequence from clone RP23-177I18 on chro...    48   0.67   1
(AL732320) Mouse DNA sequence from clone RP23-140D16 on chro...    48   0.67   1
(AL731822) Mouse DNA sequence from clone RP23-105H6 on chrom...    48   0.67   1
(AL670413) Mouse DNA sequence from clone RP23-298E4 on chrom...    48   0.67   1
(AL645911) Mouse DNA sequence from clone RP23-25M3 on chromo...    48   0.67   1
(AL645589) Mouse DNA sequence from clone RP23-289H16 on chro...    48   0.67   1
(AL606498) Mouse DNA sequence from clone RP23-197C15 on chro...    48   0.67   1
(AL592149) Mouse DNA sequence from clone RP23-283N14 on chro...    48   0.67   1
(AF288818) Rattus norvegicus cytochrome P450 4F5 gene, compl...    48   0.67   1
(AF020776) Rattus norvegicus carnitine palmitoyltransferase ...    48   0.67   1
(AE008684) Mus musculus T-cell receptor alpha/delta locus  s...    48   0.67   1
(AC174644) Mus musculus BAC clone RP23-432C18 from chromosom...    48   0.67   1
(AC174596) Mus musculus BAC clone RP24-411K2 from chromosome...    48   0.67   1
(AC173210) Mus musculus BAC clone RP23-29I5 from chromosome ...    48   0.67   1
(AC168879) Mus musculus BAC clone RP24-407B6 from chromosome...    48   0.67   1
(AC168048) Mus musculus BAC clone RP24-335I13 from chromosom...    48   0.67   1
(AC167669) Mus musculus BAC clone RP24-138L8 from chromosome...    48   0.67   1
(AC167124) Mus musculus chromosome 1, clone wi1-2628G8, comp...    48   0.67   1
(AC166058) Mus musculus BAC clone RP23-343A20 from chromosom...    48   0.67   1
(AC165265) Mus musculus BAC clone RP23-15M14 from chromosome...    48   0.67   1
(AC165252) Mus musculus BAC clone RP23-355O12 from chromosom...    48   0.67   1
(AC165153) Mus musculus BAC clone RP23-359L1 from chromosome...    48   0.67   1
(AC164542) Mus musculus chromosome 3, clone RP23-391J12, com...    48   0.67   1
(AC164155) Mus musculus BAC clone RP24-548I6 from chromosome...    48   0.67   1
(AC164121) Mus musculus BAC clone RP24-406J12 from chromosom...    48   0.67   1
(AC162947) Mus musculus BAC clone RP23-12D16 from chromosome...    48   0.67   1
(AC161597) Mus musculus BAC clone RP23-387P23 from chromosom...    48   0.67   1
(AC161113) Mus musculus BAC clone RP24-362N9 from chromosome...    48   0.67   1
(AC161058) Mus musculus BAC clone RP23-205J6 from chromosome...    48   0.67   1
(AC161047) Mus musculus BAC clone RP24-189I12 from chromosom...    48   0.67   1
(AC159893) Mus musculus BAC clone RP23-365N23 from chromosom...    48   0.67   1
(AC159285) Mus musculus BAC clone RP23-306M13 from chromosom...    48   0.67   1
(AC159242) Mus musculus BAC clone RP24-325A23 from chromosom...    48   0.67   1
(AC158625) Mus musculus 6 BAC RP23-78J15 (Roswell Park Cance...    48   0.67   1
(AC157602) Mus musculus BAC clone RP23-104H10 from chromosom...    48   0.67   1
(AC155659) Mus musculus 6 BAC RP24-68F17 (Roswell Park Cance...    48   0.67   1
(AC155304) Mus musculus BAC clone RP24-212I6 from chromosome...    48   0.67   1
(AC155233) Mus musculus BAC clone RP24-381F23 from 12, compl...    48   0.67   1
(AC154850) Mus musculus BAC clone RP23-36B4 from chromosome ...    48   0.67   1
(AC154767) Mus musculus BAC clone RP23-105P19 from chromosom...    48   0.67   1
(AC154685) Mus musculus BAC clone RP24-321G16 from chromosom...    48   0.67   1
(AC154656) Mus musculus BAC clone RP24-268M5 from chromosome...    48   0.67   1
(AC154569) Mus musculus BAC clone RP23-385I2 from chromosome...    48   0.67   1
(AC154345) Mus musculus BAC clone RP23-226O12 from chromosom...    48   0.67   1
(AC154236) Mus musculus BAC clone RP24-160E14 from chromosom...    48   0.67   1
(AC153605) Mus musculus 6 BAC RP23-346H23 (Roswell Park Canc...    48   0.67   1
(AC144927) Mus musculus chromosome 5, clone RP23-464P20, com...    48   0.67   1
(AC140368) Mus musculus BAC clone RP23-198E1 from 14, comple...    48   0.67   1
(AC140244) Mus musculus BAC clone RP24-285J23 from 14, compl...    48   0.67   1
(AC139334) Mus musculus BAC clone RP23-449C21 from chromosom...    48   0.67   1
(AC139241) Mus musculus BAC clone RP24-79L4 from 3, complete...    48   0.67   1
(AC137584) Mus musculus BAC clone RP23-351O20 from 9, comple...    48   0.67   1
(AC134749) Rattus norvegicus  BAC CH230-353M13 (Children's H...    48   0.67   1
(AC133487) Mus musculus strain C57BL/6J clone rp23-285e22, c...    48   0.67   1
(AC132099) Mus musculus BAC clone RP24-292F6 from chromosome...    48   0.67   1
(AC130551) Mus musculus BAC clone RP24-538J2 from chromosome...    48   0.67   1
(AC130529) Mus musculus BAC clone RP23-124O11 from chromosom...    48   0.67   1
(AC128859) Rattus norvegicus 10 BAC CH230-436I22 (Children's...    48   0.67   1
(AC127594) Mus musculus BAC clone RP23-44G8 from chromosome ...    48   0.67   1
(AC127185) Rattus norvegicus  BAC CH230-28E5 (Children's Hos...    48   0.67   1
(AC127086) Mus musculus BAC clone RP24-540I5 from 8, complet...    48   0.67   1
(AC126250) Mus musculus BAC clone RP23-452K12 from chromosom...    48   0.67   1
(AC126071) Rattus norvegicus 10 BAC CH230-209B21 (Children's...    48   0.67   1
(AC125409) Mus musculus BAC clone RP23-127O4 from 12, comple...    48   0.67   1
(AC125213) Mus musculus BAC clone RP23-136A14 from 7, comple...    48   0.67   1
(AC125153) Mus musculus BAC clone RP24-378F2 from chromosome...    48   0.67   1
(AC125065) Mus musculus BAC clone RP23-430G6 from chromosome...    48   0.67   1
(AC124632) Mus musculus chromosome 19, clone RP23-445I14, co...    48   0.67   1
(AC123614) Mus musculus chromosome 9, clone RP23-446P16, com...    48   0.67   1
(AC123613) Mus musculus chromosome 1, clone RP23-434L2, comp...    48   0.67   1
(AC122865) Mus musculus BAC clone RP23-143B2 from 8, complet...    48   0.67   1
(AC122285) Mus musculus BAC clone RP23-251G4 from 14, comple...    48   0.67   1
(AC122216) Mus musculus BAC clone RP23-118H9 from 5, complet...    48   0.67   1
(AC122199) Mus musculus BAC clone RP23-57C9 from chromosome ...    48   0.67   1
(AC121565) Mus musculus BAC clone RP23-223J11 from chromosom...    48   0.67   1
(AC120002) Mus musculus chromosome 12, clone RP24-147D14, co...    48   0.67   1
(AC119995) Mus musculus chromosome 3, clone RP24-120B18, com...    48   0.67   1
(AC119806) Mus musculus chromosome 7, clone RP23-211A9, comp...    48   0.67   1
(AC118772) Rattus norvegicus 10 BAC CH230-404C20 (Children's...    48   0.67   1
(AC116748) Mus musculus chromosome 9, clone RP23-80L8, compl...    48   0.67   1
(AC115945) Mus musculus chromosome 3, clone RP24-555P13, com...    48   0.67   1
(AC115896) Mus musculus chromosome 1, clone RP24-443M8, comp...    48   0.67   1
(AC115005) Mus musculus chromosome 16, clone RP24-183G19, co...    48   0.67   1
(AC114459) Rattus norvegicus 4 BAC CH230-388N23 (Children's ...    48   0.67   1
(AC114408) Mus musculus chromosome 5, clone RP23-51J22, comp...    48   0.67   1
(AC113987) Mus musculus chromosome 9, clone RP24-106M14, com...    48   0.67   1
(AC113495) Mus musculus chromosome 9, clone RP23-361O11, com...    48   0.67   1
(AC113097) Mus musculus chromosome 18, clone RP23-314E8, com...    48   0.67   1
(AC113082) Mus musculus chromosome 9, clone RP23-291C4, comp...    48   0.67   1
(AC112795) Mus musculus BAC clone RP24-374E8 from 14, comple...    48   0.67   1
(AC111867) Rattus norvegicus  BAC CH230-215N4 (Children's Ho...    48   0.67   1
(AC111647) Rattus norvegicus 4 BAC CH230-103E9 (Children's H...    48   0.67   1
(AC107787) Mus musculus chromosome 1, clone RP23-432F10, com...    48   0.67   1
(AC107642) Mus musculus chromosome 8, clone RP23-54J1, compl...    48   0.67   1
(AC107608) Rattus norvegicus 1 BAC CH230-204P6 (Children's H...    48   0.67   1
(AC104901) Mus musculus chromosome 1, clone RP24-404L18, com...    48   0.67   1
(AC102902) Mus musculus chromosome 16, clone RP24-313G10, co...    48   0.67   1
(AC102566) Mus musculus chromosome 9, clone RP23-223D10, com...    48   0.67   1
(AC101933) Mus musculus chromosome 7, clone RP24-70M5, compl...    48   0.67   1
(AC100752) Mus musculus chromosome 3, clone RP23-2A4, comple...    48   0.67   1
(AC099934) Mus musculus chromosome 12, clone RP23-17K9, comp...    48   0.67   1
(AC099771) Mus Musculus Strain C57BL6/J chromosome 5 BAC, RP...    48   0.67   1
(AC099636) Mus musculus chromosome 19, clone RP24-149H13, co...    48   0.67   1
(AC099627) Mus musculus chromosome 7, clone RP24-69E5, compl...    48   0.67   1
(AC097959) Rattus norvegicus  BAC CH230-114G10 (Children's H...    48   0.67   1
(AC095787) Rattus norvegicus 14 BAC CH230-9M3 (Children's Ho...    48   0.67   1
(AC093922) Genomic sequence for Mus musculus, clone RP23-155...    48   0.67   1
(AC084822) Mus musculus strain C57BL/6J clone rp23-47o21 map...    48   0.67   1
(AC083948) Mus musculus strain C57BL6/J chromosome 5 clone R...    48   0.67   1
(AC026231) Mus musculus strain C57BL6/J chromosome 5 clone R...    48   0.67   1
(AC012526) Mus musculus strain 129S6/SvEvTac clone rp21-671i...    48   0.67   1
(AC012399) Mus musculus strain 129S6/SvEvTac clone rp21-184c...    48   0.67   1
(AC003994) Mouse cosmid ma53a271 from 14D1-D2 (Mouse T-Cell ...    48   0.67   1
(AM910421) Macaca mulatta partial Mamu-DRB3 gene for MHC cla...    48   0.67   1
(AM910419) Macaca mulatta partial Mamu-DRB1 gene for MHC cla...    48   0.67   1
(AC189951) Rhesus Macaque  BAC CH250-309I11 () complete sequ...    48   0.67   1
(AC182670) Populus trichocarpa clone Pop1-23J20, complete se...    48   0.67   1
(AC130797) Chlamydomonas reinhardtii clone cr-1j6b, complete...    48   0.67   1
(GC590809) Sequence 2142 from patent US 7426441.                   48   0.67   1
(GC554823) Sequence 2142 from patent US 7415358.                   48   0.67   1
(GC533413) Sequence 12533 from patent US 7411051.                  48   0.67   1
(GC533412) Sequence 12532 from patent US 7411051.                  48   0.67   1
(GC528272) Sequence 1782 from patent US 7411051.                   48   0.67   1
(EA750674) Sequence 12533 from patent US 7368531.                  48   0.67   1
(EA750673) Sequence 12532 from patent US 7368531.                  48   0.67   1
(EA745533) Sequence 1782 from patent US 7368531.                   48   0.67   1
(DL002835) Humanized Immunoglobulin Loci.                          48   0.67   1
(DL002834) Humanized Immunoglobulin Loci.                          48   0.67   1
(DL002831) Humanized Immunoglobulin Loci.                          48   0.67   1
(DL002827) Humanized Immunoglobulin Loci.                          48   0.67   1
(CS789262) Sequence 518 from Patent WO2005031001.                  48   0.67   1
(CS015905) Sequence 104 from Patent WO2005007696.                  48   0.67   1
(CS015904) Sequence 103 from Patent WO2005007696.                  48   0.67   1
(CS015901) Sequence 100 from Patent WO2005007696.                  48   0.67   1
(CS015897) Sequence 96 from Patent WO2005007696.                   48   0.67   1
(GN008568) Sequence 1009 from Patent EP2014669.                    48   0.67   1
(GN008400) Sequence 841 from Patent EP2014669.                     48   0.67   1
(GM841370) Sequence 143 from Patent WO2008123777.                  48   0.67   1
(EF133527) Trichechus manatus latirostris clone Tma11 micros...    48   0.67   1
(AC169187) Erinaceus europaeus, clone XX-29460857F24, comple...    48   0.67   1
(AM494962) Leishmania braziliensis chromosome 25.                  48   0.67   1
(AM494942) Leishmania braziliensis chromosome 5.                   48   0.67   1
(AP000867) Homo sapiens genomic DNA, chromosome 11 clone:RP1...    48   0.67   1
(AL031595) Human DNA sequence from clone RP4-671O14 on chrom...    48   0.67   1
(AC114289) Homo sapiens chromosome 5 clone CTD-2541N22, comp...    48   0.67   1
(AC108118) Homo sapiens chromosome 5 clone RP11-44C2, comple...    48   0.67   1
(AC103750) Homo sapiens chromosome 15, clone RP11-494F2, com...    48   0.67   1
(AC097526) Homo sapiens BAC clone RP11-627H22 from 4, comple...    48   0.67   1
(AC073592) Homo sapiens 12 BAC RP11-83B20 (Roswell Park Canc...    48   0.67   1
(AC011995) Homo sapiens BAC clone RP11-163G21 from 2, comple...    48   0.67   1
(AC162935) Mus musculus chromosome 8 clone RP23-125L10, WORK...    48   0.67   1
(AC162594) Bos taurus clone CH240-117D18, WORKING DRAFT SEQU...    48   0.67   1
(AC162433) Atelerix albiventris clone LB4-236I12, WORKING DR...    48   0.67   1
(AC158053) Bos taurus clone CH240-56E16, WORKING DRAFT SEQUE...    48   0.67   1
(AC156414) Bos taurus clone CH240-53D21, WORKING DRAFT SEQUE...    48   0.67   1
(AC152710) Bos taurus clone CH240-7F4, WORKING DRAFT SEQUENC...    48   0.67   1
(AC146736) Otolemur garnettii clone CH256-480E9, WORKING DRA...    48   0.67   1
(AC142172) Rattus norvegicus clone CH230-273F10, WORKING DRA...    48   0.67   1
(AC142042) Rattus norvegicus clone CH230-251F24, *** SEQUENC...    48   0.67   1
(AC142008) Rattus norvegicus clone CH230-302O15, *** SEQUENC...    48   0.67   1
(AC141551) Rattus norvegicus clone CH230-22D23, *** SEQUENCI...    48   0.67   1
(AC141545) Rattus norvegicus clone CH230-486H9, WORKING DRAF...    48   0.67   1
(AC141182) Rattus norvegicus clone CH230-370D11, WORKING DRA...    48   0.67   1
(AC141173) Rattus norvegicus clone CH230-429N20, WORKING DRA...    48   0.67   1
(AC141145) Rattus norvegicus clone CH230-140B2, WORKING DRAF...    48   0.67   1
(AC141143) Rattus norvegicus clone CH230-143C14, WORKING DRA...    48   0.67   1
(AC141120) Rattus norvegicus clone CH230-50K3, *** SEQUENCIN...    48   0.67   1
(AC140756) Rattus norvegicus clone CH230-172C20, *** SEQUENC...    48   0.67   1
(AC140384) Mus musculus chromosome UNK clone RP23-166N20, WO...    48   0.67   1
(AC139951) Rattus norvegicus clone CH230-116A24, *** SEQUENC...    48   0.67   1
(AC139659) Rattus norvegicus clone CH230-51P14, WORKING DRAF...    48   0.67   1
(AC137940) Mus musculus clone RP24-446J18, WORKING DRAFT SEQ...    48   0.67   1
(AC137453) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    48   0.67   1
(AC137438) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    48   0.67   1
(AC137423) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    48   0.67   1
(AC137372) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    48   0.67   1
(AC137260) Rattus norvegicus clone CH230-unknown, WORKING DR...    48   0.67   1
(AC137214) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    48   0.67   1
(AC137204) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    48   0.67   1
(AC137175) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    48   0.67   1
(AC137168) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    48   0.67   1
(AC137024) Rattus norvegicus clone CH230-unknown, WORKING DR...    48   0.67   1
(AC137007) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    48   0.67   1
(AC136676) Rattus norvegicus clone CH230-141C19, *** SEQUENC...    48   0.67   1
(AC136588) Rattus norvegicus clone CH230-2M8, *** SEQUENCING...    48   0.67   1
(AC136571) Rattus norvegicus clone CH230-42P17, WORKING DRAF...    48   0.67   1
(AC136553) Rattus norvegicus clone CH230-146A4, WORKING DRAF...    48   0.67   1
(AC136536) Rattus norvegicus clone CH230-252C16, *** SEQUENC...    48   0.67   1
(AC136278) Rattus norvegicus clone CH230-7N23, *** SEQUENCIN...    48   0.67   1
(AC136270) Rattus norvegicus clone CH230-469I1, *** SEQUENCI...    48   0.67   1
(AC136124) Rattus norvegicus clone CH230-257B2, WORKING DRAF...    48   0.67   1
(AC136122) Rattus norvegicus clone CH230-198A9, *** SEQUENCI...    48   0.67   1
(AC136118) Rattus norvegicus clone CH230-306B3, WORKING DRAF...    48   0.67   1
(AC136053) Rattus norvegicus clone CH230-286P12, *** SEQUENC...    48   0.67   1
(AC135830) Rattus norvegicus clone CH230-115K18, WORKING DRA...    48   0.67   1
(AC135829) Rattus norvegicus clone CH230-3F4, *** SEQUENCING...    48   0.67   1
(AC135774) Rattus norvegicus clone CH230-81K12, *** SEQUENCI...    48   0.67   1
(AC135746) Rattus norvegicus clone CH230-250K4, *** SEQUENCI...    48   0.67   1
(AC135704) Rattus norvegicus clone CH230-486B10, WORKING DRA...    48   0.67   1
(AC135573) Rattus norvegicus clone CH230-459K6, WORKING DRAF...    48   0.67   1
(AC135488) Rattus norvegicus clone CH230-341B15, WORKING DRA...    48   0.67   1
(AC135403) Rattus norvegicus clone CH230-419E3, WORKING DRAF...    48   0.67   1
(AC135278) Rattus norvegicus clone CH230-302I2, *** SEQUENCI...    48   0.67   1
(AC135245) Rattus norvegicus clone CH230-505K6, *** SEQUENCI...    48   0.67   1
(AC135202) Rattus norvegicus clone CH230-125J5, WORKING DRAF...    48   0.67   1
(AC134948) Rattus norvegicus clone CH230-463F7, *** SEQUENCI...    48   0.67   1
(AC134802) Rattus norvegicus clone CH230-461P11, *** SEQUENC...    48   0.67   1
(AC134748) Rattus norvegicus clone CH230-356I6, *** SEQUENCI...    48   0.67   1
(AC134702) Rattus norvegicus clone CH230-174M10, WORKING DRA...    48   0.67   1
(AC134490) Rattus norvegicus clone CH230-247G16, WORKING DRA...    48   0.67   1
(AC134488) Rattus norvegicus clone CH230-310F21, *** SEQUENC...    48   0.67   1
(AC134275) Rattus norvegicus clone CH230-266F19, *** SEQUENC...    48   0.67   1
(AC134271) Rattus norvegicus clone CH230-444F13, WORKING DRA...    48   0.67   1
(AC134216) Rattus norvegicus clone CH230-197A12, WORKING DRA...    48   0.67   1
(AC134191) Rattus norvegicus clone CH230-251B8, WORKING DRAF...    48   0.67   1
(AC134160) Rattus norvegicus clone CH230-93N17, WORKING DRAF...    48   0.67   1
(AC134152) Rattus norvegicus clone CH230-11E17, *** SEQUENCI...    48   0.67   1
(AC134073) Rattus norvegicus clone CH230-2A7, WORKING DRAFT ...    48   0.67   1
(AC134034) Rattus norvegicus clone CH230-130K13, *** SEQUENC...    48   0.67   1
(AC133989) Rattus norvegicus clone CH230-95J3, *** SEQUENCIN...    48   0.67   1
(AC133986) Rattus norvegicus clone CH230-2J9, WORKING DRAFT ...    48   0.67   1
(AC133774) Rattus norvegicus clone CH230-25P16, WORKING DRAF...    48   0.67   1
(AC133763) Rattus norvegicus clone CH230-4M20, *** SEQUENCIN...    48   0.67   1
(AC133759) Rattus norvegicus clone CH230-5C14, WORKING DRAFT...    48   0.67   1
(AC133726) Rattus norvegicus clone CH230-338C23, WORKING DRA...    48   0.67   1
(AC133723) Rattus norvegicus clone CH230-107H7, *** SEQUENCI...    48   0.67   1
(AC133678) Rattus norvegicus clone CH230-178A18, *** SEQUENC...    48   0.67   1
(AC133623) Rattus norvegicus clone CH230-265K3, WORKING DRAF...    48   0.67   1
(AC133426) Rattus norvegicus clone CH230-288L12, WORKING DRA...    48   0.67   1
(AC133417) Rattus norvegicus clone CH230-507J22, *** SEQUENC...    48   0.67   1
(AC133415) Rattus norvegicus clone CH230-283C3, WORKING DRAF...    48   0.67   1
(AC133266) Rattus norvegicus clone CH230-270O9, WORKING DRAF...    48   0.67   1
(AC133262) Rattus norvegicus clone CH230-316D3, WORKING DRAF...    48   0.67   1
(AC133255) Rattus norvegicus clone CH230-250O19, WORKING DRA...    48   0.67   1
(AC133056) Rattus norvegicus clone CH230-25D4, WORKING DRAFT...    48   0.67   1
(AC132999) Rattus norvegicus clone CH230-5A19, WORKING DRAFT...    48   0.67   1
(AC132800) Rattus norvegicus clone CH230-3M1, *** SEQUENCING...    48   0.67   1
(AC132721) Rattus norvegicus clone CH230-43B15, *** SEQUENCI...    48   0.67   1
(AC132708) Rattus norvegicus clone CH230-479N5, *** SEQUENCI...    48   0.67   1
(AC132654) Rattus norvegicus clone CH230-177M21, WORKING DRA...    48   0.67   1
(AC132653) Rattus norvegicus clone CH230-294M3, WORKING DRAF...    48   0.67   1
(AC132650) Rattus norvegicus clone CH230-61I21, WORKING DRAF...    48   0.67   1
(AC132513) Rattus norvegicus clone CH230-103F17, WORKING DRA...    48   0.67   1
(AC132512) Rattus norvegicus clone CH230-281P12, WORKING DRA...    48   0.67   1
(AC132181) Rattus norvegicus clone CH230-235M21, WORKING DRA...    48   0.67   1
(AC132176) Rattus norvegicus clone CH230-142C4, WORKING DRAF...    48   0.67   1
(AC132024) Rattus norvegicus clone CH230-307A21, WORKING DRA...    48   0.67   1
(AC132019) Rattus norvegicus clone CH230-290I23, WORKING DRA...    48   0.67   1
(AC131821) Rattus norvegicus clone CH230-248C12, *** SEQUENC...    48   0.67   1
(AC131626) Rattus norvegicus clone CH230-163P16, *** SEQUENC...    48   0.67   1
(AC131539) Rattus norvegicus clone CH230-49P14, *** SEQUENCI...    48   0.67   1
(AC131425) Rattus norvegicus clone CH230-79H23, *** SEQUENCI...    48   0.67   1
(AC131414) Rattus norvegicus clone CH230-428L18, WORKING DRA...    48   0.67   1
(AC131352) Rattus norvegicus clone CH230-71L19, WORKING DRAF...    48   0.67   1
(AC131022) Rattus norvegicus clone CH230-18P10, *** SEQUENCI...    48   0.67   1
(AC131000) Rattus norvegicus clone CH230-224A6, *** SEQUENCI...    48   0.67   1
(AC130993) Rattus norvegicus clone CH230-250K11, WORKING DRA...    48   0.67   1
(AC130952) Rattus norvegicus clone CH230-38O6, *** SEQUENCIN...    48   0.67   1
(AC130921) Rattus norvegicus clone CH230-196O12, WORKING DRA...    48   0.67   1
(AC130917) Rattus norvegicus clone CH230-237P19, *** SEQUENC...    48   0.67   1
(AC130871) Rattus norvegicus clone CH230-57G12, *** SEQUENCI...    48   0.67   1
(AC130742) Rattus norvegicus clone CH230-114L1, WORKING DRAF...    48   0.67   1
(AC130734) Rattus norvegicus clone CH230-4O15, *** SEQUENCIN...    48   0.67   1
(AC130572) Rattus norvegicus clone CH230-181L18, WORKING DRA...    48   0.67   1
(AC130265) Rattus norvegicus clone CH230-227J20, WORKING DRA...    48   0.67   1
(AC130242) Rattus norvegicus clone CH230-472O1, WORKING DRAF...    48   0.67   1
(AC130224) Rattus norvegicus clone CH230-340K1, *** SEQUENCI...    48   0.67   1
(AC130164) Rattus norvegicus clone CH230-191L8, WORKING DRAF...    48   0.67   1
(AC130112) Rattus norvegicus clone CH230-100B18, WORKING DRA...    48   0.67   1
(AC130082) Rattus norvegicus clone CH230-61H16, *** SEQUENCI...    48   0.67   1
(AC130039) Rattus norvegicus clone CH230-340L18, *** SEQUENC...    48   0.67   1

>(AC116979) Dictyostelium discoideum chromosome 2 map 6445720-6776760
              strain AX4, complete sequence.
          Length = 331039

 Score =  617 bits (311), Expect(6) = 0.0
 Identities = 329/337 (97%)
 Strand = Plus / Minus


Query: 532    acattgagagattgtgagaaatggaataataaagatttggttaaattaaagattaaaaat 591
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150051 acattgagagattgtgagaaatggaataataaagatttggttaaattaaagattaaaaat 149992


Query: 592    ggtcaaccattntttggtgataataataataaaaaagagaattataacaatttatcatgg 651
              ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 149991 ggtcaaccattctttggtgataataataataaaaaagagaattataacaattcatcatgg 149932


Query: 652    aaagatttttataaacaaatgaccagattaaaaatgtgtaaacaatgtaatataattttt 711
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149931 aaagatttttataaacaaatgaccagattaaaaatgtgtaaacaatgtaatataattttt 149872


Query: 712    agagaatatagtaattcaaatagcgcttgtaattatnattcagatatnagagatttaatt 771
              |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 149871 agagaatatagtaattcaaatagcgcttgtaattatcattcagatattagagatttaatt 149812


Query: 772    cattctcgtggtgctcnaccttntggaatgtatgggagttgttgtttatcaaaaccaaaa 831
              |||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 149811 cattctcgtggtgctctaccttctggaatgtattggagttgttgtttatcaaaaccaaaa 149752


Query: 832    aatagtattggttgtacaacaaagtntcatgaggaag 868
              ||||||||||||||||||||||||| |||||||||||
Sbjct: 149751 aatagtattggttgtacaacaaagtgtcatgaggaag 149715

 Score =  159 bits (80), Expect(6) = 0.0
 Identities = 80/80 (100%)
 Strand = Plus / Minus


Query: 29     gaaattaaaattttaaatataggtgccatttgagaagccaaattgacgtttcagaaaaaa 88
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151303 gaaattaaaattttaaatataggtgccatttgagaagccaaattgacgtttcagaaaaaa 151244


Query: 89     attggaattttattctcttt 108
              ||||||||||||||||||||
Sbjct: 151243 attggaattttattctcttt 151224

 Score =  143 bits (72), Expect(6) = 0.0
 Identities = 72/72 (100%)
 Strand = Plus / Minus


Query: 160    catctttatcattctattaattaagtttaaaccacactcacacacactcacacacccact 219
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151172 catctttatcattctattaattaagtttaaaccacactcacacacactcacacacccact 151113


Query: 220    tccatctttgtt 231
              ||||||||||||
Sbjct: 151112 tccatctttgtt 151101

 Score = 50.1 bits (25), Expect(6) = 0.0
 Identities = 25/25 (100%)
 Strand = Plus / Minus


Query: 124    gaatttcaaaaacactattaataac 148
              |||||||||||||||||||||||||
Sbjct: 151208 gaatttcaaaaacactattaataac 151184

 Score = 36.2 bits (18), Expect(6) = 0.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus


Query: 321    catattttaattaaatta 338
              ||||||||||||||||||
Sbjct: 151011 catattttaattaaatta 150994

 Score = 28.2 bits (14), Expect(6) = 0.0
 Identities = 14/14 (100%)
 Strand = Plus / Minus


Query: 1      caaaccaaaatatc 14
              ||||||||||||||
Sbjct: 151331 caaaccaaaatatc 151318

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 869,888,603
Number of extensions: 63884245
Number of successful extensions: 9557653
Number of sequences better than 10.0: 4805
Length of query: 1016
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 992
Effective length of database: 99,340,224,878
Effective search space: 98545503078976
Effective search space used: 98545503078976
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.17
Homology vs Protein 
Query= Contig-U01530-1 (Contig-U01530-1Q) /CSM_Contig/Contig-U01530-1Q.Seq.d
         (1016 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 758,336,373
Number of extensions: 8486072
Number of successful extensions: 16547
Number of sequences better than 10.0: 0
Number of HSP's gapped: 16545
Number of HSP's successfully gapped: 0
Length of query: 338
Length of database: 1,051,180,864
Length adjustment: 129
Effective length of query: 209
Effective length of database: 633,664,753
Effective search space: 132435933377
Effective search space used: 132435933377
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.33  gvh: 0.27  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U01530-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0