NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U08964-1
Contig ID Contig-U08964-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U08964-1 (Contig-U08964-1Q) /CSM_Contig/Contig-U08964-1Q.Seq.d
CCCCACACACAACAAATATTAAAAAAAAAAGAAATTATAATTTTGAATAG
GTTTATTTGAATAGGTGATAAAGTAAAAATAATAATATTAATAAAATGGA
AGGATTATATCAATGGTCAATGTCATGGTACACATGGATTGCATCTTTCT
TTTATCCAAGACAACTACAAAATCAAATTGAACAACAAGATGGACAAGAA
GAACAACAACAACAACCACAACATTCTATAACTATAAATAATAATAATAA
TAATAATAATAATAGCAATAGCAATAGCAATAATAATAGTAATAATCCAA
CAACTTCACAACAAAGACCAACTCAACAACAGCAGCAACCACAATCTCCA
ACACAACAACAACAATCATTAAATTCATTTAAAAATATAGATCAAAAACC
AACAATAAGTTTAAAAGATTATAAAAAAAAGATTAAAGATTATTTAAATG
AAGAAGGTGAAATTGATGAAGATTTAATATATAGTCATATAATTCATAAT
CTATCATTAGAGGAATCAGATACATTAGAGAAACAATTCAAAGAAATGCA
AAGTATNNNNNNNNN----------NNNNNNNNNNACTATCATTGAACAT
TTTAAAAATGTTTATTCAATTCAATCAAAANAGAATTTAATCAGTTTTTA
CGCAGTTTTAATTAGTTTTACNAGCGTTAATGAAAATGATCNAAAGGAAT
CANAGAATTTTAAAAAANAGATNTCAATGGTAATCAAANATTTACCNCCA
TCGGTTTTAGGTGATATTGCAAATANAAATTCAAGTANAGTATTGGTTNA
TTTACATGAANACGTATTGGAAAGTTGTCGTTTANATAAATNTCAAATGA
ACGTTCANACATCTTTAATCTCTGGNATCTCCTCTGNGCTCTTTGATTTC
ATTAATAATCATAAACAGTTACCTTNTTNTTCNCCTTNTTCAACAATCAT
TAAAAATGAATTGATAGCTGCTCTCCTTCAAAATTTATCNCCAACCNTTA
GAACAAAATTATTATTTCAACNTTTTATTATCTATAAATTAATTCNATCN
CCNCCTGAATCAAGACNATCAATAATTGATTATTTATTTAGTTATAAACC
NCAGGTTANACNTTCNATTAATAATAATAATAATAACNCTACAACG
Gap gap included
Contig length 1136
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 633226
End point 632108
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U08964
List of clone(s) 

est1=CFI409F,1,556
est2=CFI409Z,557,1118
Translated Amino Acid sequence 
phttnikkkrnynfe*vylnr**SKNNNINKMEGLYQWSMSWYTWIASFFYPRQLQNQIE
QQDGQEEQQQQPQHSITINNNNNNNNNSNSNSNNNSNNPTTSQQRPTQQQQQPQSPTQQQ
QSLNSFKNIDQKPTISLKDYKKKIKDYLNEEGEIDEDLIYSHIIHNLSLEESDTLEKQFK
EMQSXXX---

---XXXTIIEHFKNVYSIQSKXNLISFYAVLISFTSVNENDXKESXNFKKXXSMVIKXLP
PSVLGDIANXNSSXVLVXLHEXVLESCRLXKXQMNVXTSLISGISSXLFDFINNHKQLPX
XSPXSTIIKNELIAALLQNLSPTXRTKLLFQXFIIYKLIXSPPESRXSIIDYLFSYKPQV
XXSINNNNNNXTT
Translated Amino Acid sequence (All Frames) 
Frame A:
phtqqilkkkeiiilnrfi*igdkvkiiilikwkdyingqchgthglhlsfiqdnykikl
nnkmdkknnnnnhnil*l*iiiiiiiiiaiaiaiiiviiqqlhnkdqlnnssnhnlqhnn
nnh*ihlki*iknqq*v*kiikkrlkii*mkkvklmki*yivi*fiiyh*rnqih*rnns
kkckvxxx---

---xxxxyh*tf*kclfnsikxefnqflrsfn*fyxr**k*skgixef*kxdxngnqxft
xigfr*yckxkfkxsigxft*xrigklsfx*xsnersxifnlwxllxal*fh**s*tvtx
xfxxfnnh*k*idscspskfixnx*nkiiistfyyl*insixx*iktinn*lfi*l*txg
xtfx******xyn

Frame B:
pthnky*kkkkl*f*iglfe*vik*k**y**ngriismvnvmvhmdcifllsktttksn*
ttrwtrrtttttttfynyk*********q*q*q*****snnfttktnsttaattisnttt
tiikfi*kyrsktnnkfkrl*kkd*rlfk*rr*n**rfni*syns*siirgiryiretiq
rnakyxxx---

---XXXTIIEHFKNVYSIQSKXNLISFYAVLISFTSVNENDXKESXNFKKXXSMVIKXLP
PSVLGDIANXNSSXVLVXLHEXVLESCRLXKXQMNVXTSLISGISSXLFDFINNHKQLPX
XSPXSTIIKNELIAALLQNLSPTXRTKLLFQXFIIYKLIXSPPESRXSIIDYLFSYKPQV
XXSINNNNNNXTT

Frame C:
phttnikkkrnynfe*vylnr**SKNNNINKMEGLYQWSMSWYTWIASFFYPRQLQNQIE
QQDGQEEQQQQPQHSITINNNNNNNNNSNSNSNNNSNNPTTSQQRPTQQQQQPQSPTQQQ
QSLNSFKNIDQKPTISLKDYKKKIKDYLNEEGEIDEDLIYSHIIHNLSLEESDTLEKQFK
EMQSXXX---

---xxxlslnilkmfiqfnqxri*svftqf*lvlxalmkmixrnxrilkxrxqw*sxiyx
hrf*vilqixiqvxywxiymxtywkvvvxinxk*tfxhl*slxsplxslisliiinsylx
xxlxqqslkmn**llsfkiyxqpleqnyyfnxllsin*fxxxlnqdxq*liiylvinxrl
xxxliiiiitlq
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U08964-1 (Contig-U08964-1Q)
/CSM_Contig/Contig-U08964-1Q.Seq.d
         (1146 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U08964-1 (Contig-U08964-1Q) /CSM_Contig/Conti...   866  0.0
Contig-U04863-1 (Contig-U04863-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U14896-1 (Contig-U14896-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U12801-1 (Contig-U12801-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U11980-1 (Contig-U11980-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U09486-1 (Contig-U09486-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U05451-1 (Contig-U05451-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U14434-1 (Contig-U14434-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U12828-1 (Contig-U12828-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U04482-1 (Contig-U04482-1Q) /CSM_Contig/Conti...    40  0.005

>Contig-U08964-1 (Contig-U08964-1Q) /CSM_Contig/Contig-U08964-1Q.Seq.d
          Length = 1146

 Score =  866 bits (437), Expect = 0.0
 Identities = 530/530 (100%)
 Strand = Plus / Plus

                                                                        
Query: 586  actatcattgaacattttaaaaatgtttattcaattcaatcaaaanagaatttaatcagt 645
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586  actatcattgaacattttaaaaatgtttattcaattcaatcaaaanagaatttaatcagt 645

                                                                        
Query: 646  ttttacgcagttttaattagttttacnagcgttaatgaaaatgatcnaaaggaatcanag 705
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646  ttttacgcagttttaattagttttacnagcgttaatgaaaatgatcnaaaggaatcanag 705

                                                                        
Query: 706  aattttaaaaaanagatntcaatggtaatcaaanatttaccnccatcggttttaggtgat 765
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706  aattttaaaaaanagatntcaatggtaatcaaanatttaccnccatcggttttaggtgat 765

                                                                        
Query: 766  attgcaaatanaaattcaagtanagtattggttnatttacatgaanacgtattggaaagt 825
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766  attgcaaatanaaattcaagtanagtattggttnatttacatgaanacgtattggaaagt 825

                                                                        
Query: 826  tgtcgtttanataaatntcaaatgaacgttcanacatctttaatctctggnatctcctct 885
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826  tgtcgtttanataaatntcaaatgaacgttcanacatctttaatctctggnatctcctct 885

                                                                        
Query: 886  gngctctttgatttcattaataatcataaacagttaccttnttnttcnccttnttcaaca 945
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886  gngctctttgatttcattaataatcataaacagttaccttnttnttcnccttnttcaaca 945

                                                                        
Query: 946  atcattaaaaatgaattgatagctgctctccttcaaaatttatcnccaaccnttagaaca 1005
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946  atcattaaaaatgaattgatagctgctctccttcaaaatttatcnccaaccnttagaaca 1005

                                                                        
Query: 1006 aaattattatttcaacnttttattatctataaattaattcnatcnccncctgaatcaaga 1065
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 aaattattatttcaacnttttattatctataaattaattcnatcnccncctgaatcaaga 1065

                                                              
Query: 1066 cnatcaataattgattatttatttagttataaaccncaggttanacnttc 1115
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 cnatcaataattgattatttatttagttataaaccncaggttanacnttc 1115


 Score =  331 bits (167), Expect = 1e-90
 Identities = 183/191 (95%)
 Strand = Plus / Plus

                                                                       
Query: 366 tcattaaattcatttaaaaatatagatcaaaaaccaacaataagtttaaaagattatnnn 425
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 366 tcattaaattcatttaaaaatatagatcaaaaaccaacaataagtttaaaagattataaa 425

                                                                       
Query: 426 nnnnngattaaagattatttaaatgaagaaggtgaaattgatgaagatttaatatatagt 485
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aaaaagattaaagattatttaaatgaagaaggtgaaattgatgaagatttaatatatagt 485

                                                                       
Query: 486 catataattcataatctatcattagaggaatcagatacattagagaaacaattcaaagaa 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 catataattcataatctatcattagaggaatcagatacattagagaaacaattcaaagaa 545

                      
Query: 546 atgcaaagtat 556
           |||||||||||
Sbjct: 546 atgcaaagtat 556


 Score =  252 bits (127), Expect = 7e-67
 Identities = 147/157 (93%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccccacacacaacaaatattnnnnnnnnnngaaattataattttgaataggtttatttga 60
           ||||||||||||||||||||          ||||||||||||||||||||||||||||||
Sbjct: 1   ccccacacacaacaaatattaaaaaaaaaagaaattataattttgaataggtttatttga 60

                                                                       
Query: 61  ataggtgataaagtaaaaataataatattaataaaatggaaggattatatcaatggtcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ataggtgataaagtaaaaataataatattaataaaatggaaggattatatcaatggtcaa 120

                                                
Query: 121 tgtcatggtacacatggattgcatctttcttttatcc 157
           |||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgtcatggtacacatggattgcatctttcttttatcc 157


 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 297 ccaacaacttcacaacaaaga 317
           |||||||||||||||||||||
Sbjct: 297 ccaacaacttcacaacaaaga 317


>Contig-U04863-1 (Contig-U04863-1Q) /CSM_Contig/Contig-U04863-1Q.Seq.d
          Length = 768

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 68  ataaagtaaaaataataatattaataaaat 97
           ||||| |||||||||||||| |||||||||
Sbjct: 98  ataaaataaaaataataataataataaaat 127


 Score = 30.2 bits (15), Expect = 5.0
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                              
Query: 76  aaaataataatattaataa 94
           |||||||||||| ||||||
Sbjct: 123 aaaataataataataataa 141


>Contig-U14896-1 (Contig-U14896-1Q) /CSM_Contig/Contig-U14896-1Q.Seq.d
          Length = 846

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 70  aaagtaaaaataataatattaataa 94
           |||||||||||||||||| ||||||
Sbjct: 608 aaagtaaaaataataataataataa 632


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,589
Number of Sequences: 6905
Number of extensions: 22589
Number of successful extensions: 3573
Number of sequences better than 10.0: 720
length of query: 1146
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1130
effective length of database: 5,564,391
effective search space: 6287761830
effective search space used: 6287761830
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.14
Homology vs DNA 
Query= Contig-U08964-1 (Contig-U08964-1Q) /CSM_Contig/Contig-U08964-1Q.Seq.d
         (1146 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ374979) Dictyostelium discoideum cDNA clone:ddc17b04, 3' ...   866   0.0    1
(BJ361393) Dictyostelium discoideum cDNA clone:ddc17b04, 5' ...   250   e-133  3
(AC224028) Bos taurus clone CH240-451P24, WORKING DRAFT SEQU...    52   0.047  1
(AC222332) Bos taurus clone CH240-415E17, WORKING DRAFT SEQU...    52   0.047  1
(AC219483) Bos taurus clone CH240-332B8, WORKING DRAFT SEQUE...    52   0.047  1
(AC165698) Bos taurus clone CH240-166F6, WORKING DRAFT SEQUE...    52   0.047  1
(AC116922) Dictyostelium discoideum chromosome 2 map 6061442...    34   0.062  7
(AC170649) Bos taurus clone CH240-227E24, WORKING DRAFT SEQU...    50   0.076  3
(BX005088) Zebrafish DNA sequence from clone CH211-160E15 in...    42   0.090  6
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    34   0.10   7
(AC132314) Mus musculus BAC clone RP24-233C4 from chromosome...    46   0.13   2
(DU951019) 213396 Tomato MboI BAC Library Solanum lycopersic...    40   0.14   2
(DU867589) 87313 Tomato HindIII BAC Library Solanum lycopers...    36   0.14   2
(AL928594) Mouse DNA sequence from clone RP23-35H8 on chromo...    50   0.19   1
(AC185972) Pan troglodytes BAC clone CH251-639D5 from chromo...    50   0.19   1
(AC096711) Homo sapiens BAC clone RP11-1E22 from 4, complete...    50   0.19   1
(AC157136) Bos taurus clone CH240-71E13, WORKING DRAFT SEQUE...    50   0.19   1
(AC156492) Bos taurus clone CH240-51E8, WORKING DRAFT SEQUEN...    50   0.19   1
(AC147753) Otolemur garnettii clone CH256-502N6, WORKING DRA...    50   0.19   1
(AC147725) Otolemur garnettii clone CH256-269A1, WORKING DRA...    50   0.19   1
(AC123414) Rattus norvegicus clone CH230-159K11, WORKING DRA...    50   0.19   1
(AC111285) Rattus norvegicus clone CH230-55C5, *** SEQUENCIN...    50   0.19   1
(AC230855) Bos taurus clone CH240-497M12, WORKING DRAFT SEQU...    50   0.19   1
(AC224154) Bos taurus clone CH240-448N15, WORKING DRAFT SEQU...    50   0.19   1
(AC223894) Bos taurus clone CH240-455C18, WORKING DRAFT SEQU...    50   0.19   1
(AC223871) Bos taurus clone CH240-456A6, WORKING DRAFT SEQUE...    50   0.19   1
(AC222004) Bos taurus clone CH240-375K8, WORKING DRAFT SEQUE...    50   0.19   1
(AC221584) Bos taurus clone CH240-391L10, WORKING DRAFT SEQU...    50   0.19   1
(AC220230) Bos taurus clone CH240-366P4, WORKING DRAFT SEQUE...    50   0.19   1
(AC191390) Zea mays chromosome 7 clone ZMMBBb-156I15; ZMMBBb...    50   0.19   1
(AC181838) Strongylocentrotus purpuratus clone R3-1022J19, W...    50   0.19   1
(AC174987) Bos taurus clone CH240-458O1, WORKING DRAFT SEQUE...    50   0.19   1
(AC173043) Bos taurus clone CH240-98E10, WORKING DRAFT SEQUE...    50   0.19   1
(AC172512) Bos taurus clone CH240-302H19, WORKING DRAFT SEQU...    50   0.19   1
(AC171960) Bos taurus clone CH240-274D12, WORKING DRAFT SEQU...    50   0.19   1
(AC171571) Bos taurus clone CH240-273P12, WORKING DRAFT SEQU...    50   0.19   1
(AC170426) Bos taurus clone CH240-249O24, WORKING DRAFT SEQU...    50   0.19   1
(AC165930) Bos taurus clone CH240-168K8, WORKING DRAFT SEQUE...    50   0.19   1
(AC163155) Bos taurus clone CH240-75D18, WORKING DRAFT SEQUE...    50   0.19   1
(AC163066) Bos taurus clone CH240-124M3, WORKING DRAFT SEQUE...    50   0.19   1
(CC904537) t014n21ba.r1 TAMBT Bos taurus genomic clone t014n...    50   0.19   1
(BZ266741) CH230-470J8.TV CHORI-230 Segment 2 Rattus norvegi...    50   0.19   1
(BZ169340) CH230-247A14.TV CHORI-230 Segment 2 Rattus norveg...    50   0.19   1
(EL908755) INIT2_27_B11.b1_A006 G5 trophont cDNA (INIT2) Ich...    50   0.19   1
(EG984466) GLE010_B07_031 Cyamopsis tetragonoloba (L.) Taub ...    50   0.19   1
(CK250719) EST734356 potato callus cDNA library, normalized ...    50   0.19   1
(CK250718) EST734355 potato callus cDNA library, normalized ...    50   0.19   1
(BX004773) Zebrafish DNA sequence from clone DKEY-13D19.           40   0.23   6
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    38   0.25   5
(AL844509) Plasmodium falciparum chromosome 13.                    40   0.31   10
(BX323049) Zebrafish DNA sequence from clone DKEY-30L22 in l...    42   0.32   3
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    36   0.32   15
(BX571854) Zebrafish DNA sequence from clone CH211-195O19 in...    34   0.41   2
(BX813309) Mouse DNA sequence from clone RP23-450P5 on chrom...    36   0.42   2
(BX004769) Zebrafish DNA sequence from clone DKEY-15I8 in li...    42   0.45   5
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    32   0.52   12
(CR077757) Reverse strand read from insert in 3'HPRT inserti...    36   0.54   2
(CU928264) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.57   6
(CT025936) Zebrafish DNA sequence from clone CH73-211C7 in l...    48   0.74   1
(CR792427) Zebrafish DNA sequence from clone DKEY-249D19 in ...    48   0.74   1
(BX927081) Zebrafish DNA sequence from clone DKEYP-85H7 in l...    48   0.74   1
(BX510369) Zebrafish DNA sequence from clone CH211-126I22 in...    48   0.74   1
(AC163998) Mus musculus chromosome 15, clone RP24-326H11, co...    48   0.74   1
(AC161867) Mus musculus chromosome 8, clone RP24-281E22, com...    48   0.74   1
(AC131725) Mus musculus BAC clone RP23-129H16 from chromosom...    48   0.74   1
(AC124374) Mus musculus BAC clone RP24-567K8 from chromosome...    48   0.74   1
(AC108915) Mus musculus chromosome 8, clone RP23-444O13, com...    48   0.74   1
(AC087113) Mus Musculus Strain C57BL6/J Chromosome 15 BAC, R...    48   0.74   1
(CS788835) Sequence 91 from Patent WO2005031001.                   48   0.74   1
(AL929603) Trypanosoma brucei chromosome 1, complete sequence.     48   0.74   1
(AC161691) Bos taurus clone CH240-107N7, WORKING DRAFT SEQUE...    48   0.74   1
(AC160149) Bos taurus clone CH240-92G7, WORKING DRAFT SEQUEN...    48   0.74   1
(AC159851) Bos taurus clone CH240-73B15, WORKING DRAFT SEQUE...    48   0.74   1
(AC156408) Bos taurus clone CH240-58G21, WORKING DRAFT SEQUE...    48   0.74   1
(AC152733) Bos taurus clone CH240-15O22, WORKING DRAFT SEQUE...    48   0.74   1
(AC151233) Bos taurus clone CH240-11A19, WORKING DRAFT SEQUE...    48   0.74   1
(AC150867) Bos taurus clone CH240-289K18, WORKING DRAFT SEQU...    48   0.74   1
(AC150584) Bos taurus clone CH240-270H19, WORKING DRAFT SEQU...    48   0.74   1
(AC150507) Bos taurus clone CH240-283M11, WORKING DRAFT SEQU...    48   0.74   1
(AC128429) Rattus norvegicus clone CH230-105J1, *** SEQUENCI...    48   0.74   1
(AC121545) Mus musculus clone RP24-490N8, LOW-PASS SEQUENCE ...    48   0.74   1
(AC074172) Mus musculus clone RP23-78K12, WORKING DRAFT SEQU...    48   0.74   1
(CT027540) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.74   1
(BX640460) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.74   1
(AC230826) Bos taurus clone CH240-497O1, WORKING DRAFT SEQUE...    48   0.74   1
(AC230060) Bos taurus clone CH240-523D6, WORKING DRAFT SEQUE...    48   0.74   1
(AC223963) Bos taurus clone CH240-453J21, WORKING DRAFT SEQU...    48   0.74   1
(AC223754) Bos taurus clone CH240-458K3, WORKING DRAFT SEQUE...    48   0.74   1
(AC223316) Bos taurus clone CH240-422E22, WORKING DRAFT SEQU...    48   0.74   1
(AC222815) Bos taurus clone CH240-438C1, WORKING DRAFT SEQUE...    48   0.74   1
(AC222482) Bos taurus clone CH240-419D10, WORKING DRAFT SEQU...    48   0.74   1
(AC222394) Bos taurus clone CH240-417D2, WORKING DRAFT SEQUE...    48   0.74   1
(AC221395) Bos taurus clone CH240-406A14, WORKING DRAFT SEQU...    48   0.74   1
(AC221319) Bos taurus clone CH240-403H5, WORKING DRAFT SEQUE...    48   0.74   1
(AC220915) Bos taurus clone CH240-341M15, WORKING DRAFT SEQU...    48   0.74   1
(AC220160) Bos taurus clone CH240-364I7, WORKING DRAFT SEQUE...    48   0.74   1
(AC220050) Bos taurus clone CH240-315G14, WORKING DRAFT SEQU...    48   0.74   1
(AC219591) Bos taurus clone CH240-328L7, WORKING DRAFT SEQUE...    48   0.74   1
(AC218686) Bos taurus clone CH240-297J20, WORKING DRAFT SEQU...    48   0.74   1
(AC208686) Zea mays chromosome 5 clone ZMMBBb-269F15; ZMMBBb...    48   0.74   1

>(BJ374979) Dictyostelium discoideum cDNA clone:ddc17b04, 3' end,
            single read.
          Length = 562

 Score =  866 bits (437), Expect = 0.0
 Identities = 530/530 (100%)
 Strand = Plus / Minus


Query: 586  actatcattgaacattttaaaaatgtttattcaattcaatcaaaanagaatttaatcagt 645
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562  actatcattgaacattttaaaaatgtttattcaattcaatcaaaanagaatttaatcagt 503


Query: 646  ttttacgcagttttaattagttttacnagcgttaatgaaaatgatcnaaaggaatcanag 705
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502  ttttacgcagttttaattagttttacnagcgttaatgaaaatgatcnaaaggaatcanag 443


Query: 706  aattttaaaaaanagatntcaatggtaatcaaanatttaccnccatcggttttaggtgat 765
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442  aattttaaaaaanagatntcaatggtaatcaaanatttaccnccatcggttttaggtgat 383


Query: 766  attgcaaatanaaattcaagtanagtattggttnatttacatgaanacgtattggaaagt 825
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382  attgcaaatanaaattcaagtanagtattggttnatttacatgaanacgtattggaaagt 323


Query: 826  tgtcgtttanataaatntcaaatgaacgttcanacatctttaatctctggnatctcctct 885
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322  tgtcgtttanataaatntcaaatgaacgttcanacatctttaatctctggnatctcctct 263


Query: 886  gngctctttgatttcattaataatcataaacagttaccttnttnttcnccttnttcaaca 945
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262  gngctctttgatttcattaataatcataaacagttaccttnttnttcnccttnttcaaca 203


Query: 946  atcattaaaaatgaattgatagctgctctccttcaaaatttatcnccaaccnttagaaca 1005
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202  atcattaaaaatgaattgatagctgctctccttcaaaatttatcnccaaccnttagaaca 143


Query: 1006 aaattattatttcaacnttttattatctataaattaattcnatcnccncctgaatcaaga 1065
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142  aaattattatttcaacnttttattatctataaattaattcnatcnccncctgaatcaaga 83


Query: 1066 cnatcaataattgattatttatttagttataaaccncaggttanacnttc 1115
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82   cnatcaataattgattatttatttagttataaaccncaggttanacnttc 33

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 946,754,330
Number of extensions: 67928265
Number of successful extensions: 6121322
Number of sequences better than 10.0: 365
Length of query: 1146
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1122
Effective length of database: 97,308,875,965
Effective search space: 109180558832730
Effective search space used: 109180558832730
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.24
Homology vs Protein 
Query= Contig-U08964-1 (Contig-U08964-1Q) /CSM_Contig/Contig-U08964-1Q.Seq.d
         (1146 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 832,127,282
Number of extensions: 12757171
Number of successful extensions: 12517
Number of sequences better than 10.0: 0
Number of HSP's gapped: 12516
Number of HSP's successfully gapped: 0
Length of query: 382
Length of database: 1,040,966,779
Length adjustment: 130
Effective length of query: 252
Effective length of database: 624,409,729
Effective search space: 157351251708
Effective search space used: 157351251708
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.91  gvh: 0.35  alm: 0.40  top: 0.40  tms: 0.00  mit: 0.28  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: endoplasmic reticulum
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U08964-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0