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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U08961-1
Contig ID Contig-U08961-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U08961-1 (Contig-U08961-1Q) /CSM_Contig/Contig-U08961-1Q.Seq.d
AAATAAATAAAGTTTTAAAAAAAAACAAGAATGACATCTTTTAAAGGTGA
CAGACTNGTTGTAAATATAAACGATGATAATGATGATGACTCTAAATCTT
CATTATTAGAGGAGTTTAAAAGTAGCAACAAGTTGGATGGATTTCATAAT
AAAAAGAAATCTAATTACAGAAGATGTTTAGATTTTTTTAAAAAGTTATT
ATTACCAGTTGGAAAGATGCCACATGAAGATAGATTAAATATGGATTGGT
TACAAAAATGGAGAAAATATAATAGGTTCCCATTTAAATTATTAATACAT
TTAGCATTAACTGTTTGTTTAACAACAACTATATTTTTACAAACTGGAGA
TTTAACAGTATATTCAGTTGGAATTGAAGCTACATGGTATAATATATTCT
TTCCAACCGATTTTCAATATGAAGGTGATTATGGTGCAAATATTATGTAT
TTATACACTATAAATGAAACGATTTCAATGATAAAGGATAATTTAGAAGC
ATATAATTCATTAGAGGATACATCAGTAAATAGATTTCAAGTTTATTCAC
CAACGAATGGAGATTTCTCTCCACCATATAATGCAACTATGACTATNNNN
NNNNN----------NNNNNNNNNNCTTCAAAGTTAATTTTAGATTCATT
CATTATTGTTCTATCAATTCTTAGTCAAATTTTAGCATGGAGATCATTTG
TTTTCTCCTTTAAAACTTATCAACGTACAAAGAGACTATTGAGAAGAAAT
TCAACTAGATCACTTTTAACTGTCAATTGGAAATCACTCAGTTGGAAAAC
CAAATTAAGATTCTTTAATCTTTGGTTTGTACTTTGTTTAATTAGTAATG
TATTGACAATTGCTGGTGCCATTTTGGATTTCTTTGAAGTACCTGGTACC
GTTAGTTCAACTGCAACCAAAGTATTGATTGGTCTTGGTACTTTGTTATC
TTGGATTAATATGATTAGATATTTAGAATTTGACACAAAATCAACTTCTT
TAATTCGTGCTTTAATCAATGGTTTACCAGAGATAATTCGATTCTCGGCT
GGAAGTCTCCCAATTTTCATTGGTTTCTGTTTATTTGGTTTAATGGTTTT
CTCTGAGCATACTCTAAGATTCGCTTCATTTGGTGAGGCTGCTATCACTC
TTTTCGGTTTACAAAATGGTGATGATGTTCAAGCAACTTTTCGTGCAACT
GAAAAAGATCCTATCATTTCAAAAATGTACTTTTTCGTATTTGTCTTCAT
CTCTGTCTATTGCATTTCCAAACTTACATGCAATCAGGAATCTTCTATTC
TCGTTCAATC
Gap gap included
Contig length 1300
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 42701
End point 43986
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U08961
List of clone(s) 

est1=CFI346F,1,596
est2=CFI346Z,597,1282
Translated Amino Acid sequence 
k*ikf*KKTRMTSFKGDRLVVNINDDNDDDSKSSLLEEFKSSNKLDGFHNKKKSNYRRCL
DFFKKLLLPVGKMPHEDRLNMDWLQKWRKYNRFPFKLLIHLALTVCLTTTIFLQTGDLTV
YSVGIEATWYNIFFPTDFQYEGDYGANIMYLYTINETISMIKDNLEAYNSLEDTSVNRFQ
VYSPTNGDFSPPYNATMTXXX---

---XXXXSKLILDSFIIVLSILSQILAWRSFVFSFKTYQRTKRLLRRNSTRSLLTVNWKS
LSWKTKLRFFNLWFVLCLISNVLTIAGAILDFFEVPGTVSSTATKVLIGLGTLLSWINMI
RYLEFDTKSTSLIRALINGLPEIIRFSAGSLPIFIGFCLFGLMVFSEHTLRFASFGEAAI
TLFGLQNGDDVQATFRATEKDPIISKMYFFVFVFISVYCISKLTCNQESSILVQ
Translated Amino Acid sequence (All Frames) 
Frame A:
k*ikf*KKTRMTSFKGDRLVVNINDDNDDDSKSSLLEEFKSSNKLDGFHNKKKSNYRRCL
DFFKKLLLPVGKMPHEDRLNMDWLQKWRKYNRFPFKLLIHLALTVCLTTTIFLQTGDLTV
YSVGIEATWYNIFFPTDFQYEGDYGANIMYLYTINETISMIKDNLEAYNSLEDTSVNRFQ
VYSPTNGDFSPPYNATMTXXX---

---XXXXSKLILDSFIIVLSILSQILAWRSFVFSFKTYQRTKRLLRRNSTRSLLTVNWKS
LSWKTKLRFFNLWFVLCLISNVLTIAGAILDFFEVPGTVSSTATKVLIGLGTLLSWINMI
RYLEFDTKSTSLIRALINGLPEIIRFSAGSLPIFIGFCLFGLMVFSEHTLRFASFGEAAI
TLFGLQNGDDVQATFRATEKDPIISKMYFFVFVFISVYCISKLTCNQESSILVQ

Frame B:
nk*sfkkkqe*hllkvtdxl*i*tmimmmtlnlhy*rslkvatswmdfiikrnlitedv*
iflksyyyqlerchmkid*iwigykngeniigshlny*yi*h*lfv*qqlyfyklei*qy
iqlelklhgiiysfqpifnmkvimvqilciytl*mkrfq**rii*khiih*rihq*idfk
fihqrmeislhhimql*lxxx---

---xxxlqs*f*ihsllfyqflvkf*hgdhlfsplklinvqrdy*eeiqldhf*lsignh
svgkpn*dslifglyfv*lvmy*qllvpfwislkylvplvqlqpky*lvlvlcylgli*l
di*nltqnqll*fvl*smvyqr*fdsrlevsqfslvsvylv*wfslsil*dslhlvrlls
lfsvykmvmmfkqlfvqlkkilsfqkctfsylssslsiafpnlhairnllfsfn

Frame C:
inkvlkknkndif*r*qtxckykr*****l*ifiirgv*k*qqvgwis**kei*lqkmfr
ff*kviitswkdat*r*ikyglvtkmeki**vpi*iintfsinclfnnnyiftnwrfnsi
fswn*symv*yilsnrfsi*r*lwckyyvfihyk*ndfndkg*frsi*firgyisk*iss
lftnewrflsti*cnydyxxx---

---xxxfkvnfrfihycsins*snfsmeiicfll*nlstyketiekkfn*itfncqleit
qlenqikil*slvctlfn**cidncwchfgfl*stwyr*fncnqsidwswyfvild*yd*
ifri*hkinffnscfnqwftrdnsilgwkspnfhwflfiwfngfl*ayskirfiw*gcyh
sfrftkw**cssnfscn*krsyhfknvlfriclhlcllhfqtymqsgifysrsi
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U08961-1 (Contig-U08961-1Q)
/CSM_Contig/Contig-U08961-1Q.Seq.d
         (1310 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U08961-1 (Contig-U08961-1Q) /CSM_Contig/Conti...  1358  0.0
Contig-U05167-1 (Contig-U05167-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U11354-1 (Contig-U11354-1Q) /CSM_Contig/Conti...    36  0.093
Contig-U09736-1 (Contig-U09736-1Q) /CSM_Contig/Conti...    36  0.093
Contig-U06229-1 (Contig-U06229-1Q) /CSM_Contig/Conti...    36  0.093
Contig-U02975-1 (Contig-U02975-1Q) /CSM_Contig/Conti...    36  0.093
Contig-U14237-1 (Contig-U14237-1Q) /CSM_Contig/Conti...    34  0.37
Contig-U13758-1 (Contig-U13758-1Q) /CSM_Contig/Conti...    34  0.37
Contig-U13509-1 (Contig-U13509-1Q) /CSM_Contig/Conti...    34  0.37
Contig-U12536-1 (Contig-U12536-1Q) /CSM_Contig/Conti...    34  0.37

>Contig-U08961-1 (Contig-U08961-1Q) /CSM_Contig/Contig-U08961-1Q.Seq.d
          Length = 1310

 Score = 1358 bits (685), Expect = 0.0
 Identities = 685/685 (100%)
 Strand = Plus / Plus

                                                                        
Query: 626  cttcaaagttaattttagattcattcattattgttctatcaattcttagtcaaattttag 685
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626  cttcaaagttaattttagattcattcattattgttctatcaattcttagtcaaattttag 685

                                                                        
Query: 686  catggagatcatttgttttctcctttaaaacttatcaacgtacaaagagactattgagaa 745
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686  catggagatcatttgttttctcctttaaaacttatcaacgtacaaagagactattgagaa 745

                                                                        
Query: 746  gaaattcaactagatcacttttaactgtcaattggaaatcactcagttggaaaaccaaat 805
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746  gaaattcaactagatcacttttaactgtcaattggaaatcactcagttggaaaaccaaat 805

                                                                        
Query: 806  taagattctttaatctttggtttgtactttgtttaattagtaatgtattgacaattgctg 865
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806  taagattctttaatctttggtttgtactttgtttaattagtaatgtattgacaattgctg 865

                                                                        
Query: 866  gtgccattttggatttctttgaagtacctggtaccgttagttcaactgcaaccaaagtat 925
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866  gtgccattttggatttctttgaagtacctggtaccgttagttcaactgcaaccaaagtat 925

                                                                        
Query: 926  tgattggtcttggtactttgttatcttggattaatatgattagatatttagaatttgaca 985
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926  tgattggtcttggtactttgttatcttggattaatatgattagatatttagaatttgaca 985

                                                                        
Query: 986  caaaatcaacttctttaattcgtgctttaatcaatggtttaccagagataattcgattct 1045
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986  caaaatcaacttctttaattcgtgctttaatcaatggtttaccagagataattcgattct 1045

                                                                        
Query: 1046 cggctggaagtctcccaattttcattggtttctgtttatttggtttaatggttttctctg 1105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046 cggctggaagtctcccaattttcattggtttctgtttatttggtttaatggttttctctg 1105

                                                                        
Query: 1106 agcatactctaagattcgcttcatttggtgaggctgctatcactcttttcggtttacaaa 1165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1106 agcatactctaagattcgcttcatttggtgaggctgctatcactcttttcggtttacaaa 1165

                                                                        
Query: 1166 atggtgatgatgttcaagcaacttttcgtgcaactgaaaaagatcctatcatttcaaaaa 1225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1166 atggtgatgatgttcaagcaacttttcgtgcaactgaaaaagatcctatcatttcaaaaa 1225

                                                                        
Query: 1226 tgtactttttcgtatttgtcttcatctctgtctattgcatttccaaacttacatgcaatc 1285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1226 tgtactttttcgtatttgtcttcatctctgtctattgcatttccaaacttacatgcaatc 1285

                                     
Query: 1286 aggaatcttctattctcgttcaatc 1310
            |||||||||||||||||||||||||
Sbjct: 1286 aggaatcttctattctcgttcaatc 1310


 Score = 1084 bits (547), Expect = 0.0
 Identities = 564/571 (98%)
 Strand = Plus / Plus

                                                                       
Query: 26  caagaatgacatcttttaaaggtgacagactngttgtaaatataaacgatgataatgatg 85
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26  caagaatgacatcttttaaaggtgacagactngttgtaaatataaacgatgataatgatg 85

                                                                       
Query: 86  atgactctaaatcttcattattagaggagtttaaaagtagcaacaagttggatggatttc 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  atgactctaaatcttcattattagaggagtttaaaagtagcaacaagttggatggatttc 145

                                                                       
Query: 146 ataataaaaagaaatctaattacagaagatgtttagannnnnnnaaaaagttattattac 205
           |||||||||||||||||||||||||||||||||||||       ||||||||||||||||
Sbjct: 146 ataataaaaagaaatctaattacagaagatgtttagatttttttaaaaagttattattac 205

                                                                       
Query: 206 cagttggaaagatgccacatgaagatagattaaatatggattggttacaaaaatggagaa 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 cagttggaaagatgccacatgaagatagattaaatatggattggttacaaaaatggagaa 265

                                                                       
Query: 266 aatataataggttcccatttaaattattaatacatttagcattaactgtttgtttaacaa 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aatataataggttcccatttaaattattaatacatttagcattaactgtttgtttaacaa 325

                                                                       
Query: 326 caactatatttttacaaactggagatttaacagtatattcagttggaattgaagctacat 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 caactatatttttacaaactggagatttaacagtatattcagttggaattgaagctacat 385

                                                                       
Query: 386 ggtataatatattctttccaaccgattttcaatatgaaggtgattatggtgcaaatatta 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ggtataatatattctttccaaccgattttcaatatgaaggtgattatggtgcaaatatta 445

                                                                       
Query: 446 tgtatttatacactataaatgaaacgatttcaatgataaaggataatttagaagcatata 505
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgtatttatacactataaatgaaacgatttcaatgataaaggataatttagaagcatata 505

                                                                       
Query: 506 attcattagaggatacatcagtaaatagatttcaagtttattcaccaacgaatggagatt 565
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 attcattagaggatacatcagtaaatagatttcaagtttattcaccaacgaatggagatt 565

                                          
Query: 566 tctctccaccatataatgcaactatgactat 596
           |||||||||||||||||||||||||||||||
Sbjct: 566 tctctccaccatataatgcaactatgactat 596


>Contig-U05167-1 (Contig-U05167-1Q) /CSM_Contig/Contig-U05167-1Q.Seq.d
          Length = 495

 Score = 38.2 bits (19), Expect = 0.023
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 987  aaaatcaacttctttaatt 1005
            |||||||||||||||||||
Sbjct: 351  aaaatcaacttctttaatt 369


>Contig-U11354-1 (Contig-U11354-1Q) /CSM_Contig/Contig-U11354-1Q.Seq.d
          Length = 1429

 Score = 36.2 bits (18), Expect = 0.093
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 284  ttaaattattaatacatt 301
            ||||||||||||||||||
Sbjct: 1390 ttaaattattaatacatt 1373


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,425
Number of Sequences: 6905
Number of extensions: 19425
Number of successful extensions: 1739
Number of sequences better than 10.0: 199
length of query: 1310
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1294
effective length of database: 5,564,391
effective search space: 7200321954
effective search space used: 7200321954
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.13
Homology vs DNA 
Query= Contig-U08961-1 (Contig-U08961-1Q) /CSM_Contig/Contig-U08961-1Q.Seq.d
         (1310 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ375091) Dictyostelium discoideum cDNA clone:ddc17l11, 3' ...  1358   0.0    1
(BJ361491) Dictyostelium discoideum cDNA clone:ddc17l11, 5' ...   807   0.0    3
(AC092491) Homo sapiens 12 BAC RP11-125G9 (Roswell Park Canc...    36   0.023  7
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    40   0.029  10
(AM446519) Vitis vinifera, whole genome shotgun sequence, co...    48   0.19   3
(AC176641) Strongylocentrotus purpuratus clone R3-3080M02, W...    48   0.38   4
(CU463286) Mouse DNA sequence from clone CH29-575J15 on chro...    40   0.39   5
(AC148467) Xenopus tropicalis clone CH216-90F21, WORKING DRA...    36   0.47   2
(AC189184) Brassica rapa subsp. pekinensis clone KBrB001B07,...    36   0.66   8
(CP000258) Staphylococcus aureus subsp. aureus USA300_FPR375...    36   0.73   6
(AC181865) Strongylocentrotus purpuratus clone R3-1019M14, W...    48   0.77   6
(AC149959) Strongylocentrotus purpuratus clone R3-32B11, WOR...    48   0.85   1
(AC177757) Strongylocentrotus purpuratus clone R3-1005N12, W...    48   0.85   1
(AC177594) Strongylocentrotus purpuratus clone R3-1023P7, WO...    48   0.85   1
(AC173969) Strongylocentrotus purpuratus clone R3-1011O21, W...    48   0.85   1
(BX004811) Zebrafish DNA sequence from clone BUSM1-118J2 in ...    36   1.0    5
(AC015872) Homo sapiens clone RP11-88A1, LOW-PASS SEQUENCE S...    46   1.1    4
(AM429828) Vitis vinifera contig VV78X093199.8, whole genome...    40   1.2    3
(AY686475) Mus musculus strain 129S6/SvEvTac chromosome 6 cl...    40   1.4    6
(AC072028) Homo sapiens 3 BAC RP11-190C21 (Roswell Park Canc...    42   1.4    5
(AC146512) Pan troglodytes BAC clone RP43-16E21 from chromos...    36   1.7    2
(AC006332) Homo sapiens BAC clone RP11-376O14 from 7, comple...    36   1.7    2
(AC147066) Pan troglodytes BAC clone RP43-164F2 from chromos...    36   1.7    2
(Z81494) Caenorhabditis elegans Cosmid F02E9.                      38   2.2    3
(FH773828) OSB_1167005xc08f1.ab1 OSB_1167 Nicotiana tabacum ...    36   2.3    2
(FH774180) OSB_1167005xj14f1.ab1 OSB_1167 Nicotiana tabacum ...    36   2.3    2
(FH774014) OSB_1167005xj07f1.ab1 OSB_1167 Nicotiana tabacum ...    36   2.3    2
(CU424478) Mouse DNA sequence from clone CH29-171N14 on chro...    40   2.5    7
(AC091600) Homo sapiens chromosome UNK clone RP11-321K15, WO...    40   2.5    4
(AC147364) Medicago truncatula chromosome 8 clone mth2-68g24...    38   2.6    5
(EY312802) CAWX24597.rev CAWX Helobdella robusta Primary Ear...    44   2.9    2
(AB007645) Arabidopsis thaliana genomic DNA, chromosome 5, T...    42   3.0    3
(AL831752) Mouse DNA sequence from clone RP23-414J22 on chro...    46   3.3    1
(AC170813) Rhesus Macaque  BAC CH250-421G6 (Children's Hospi...    46   3.3    1
(AC123975) Medicago truncatula clone mth2-12m13, complete se...    46   3.3    1
(DQ307240) Penaeus monodon microsatellite 8EG sequence.            46   3.3    1
(AM910995) Plasmodium knowlesi strain H chromosome 13, compl...    46   3.3    1
(AM910987) Plasmodium knowlesi strain H chromosome 5, comple...    46   3.3    1
(AC144833) Homo sapiens chromosome 15, clone WI2-82651E9, co...    46   3.3    1
(AC145115) Homo sapiens chromosome 15 clone XXfos-82666C4 ma...    46   3.3    1
(AC101402) Mus musculus clone RP23-120D24, LOW-PASS SEQUENCE...    46   3.3    1
(CR954249) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   3.3    1
(EK290526) 1095462328709 Global-Ocean-Sampling_GS-31-01-01-1...    46   3.3    1
(CR318156) mte1-43K3RM1 BAC end, cultivar Jemalong A17 of Me...    46   3.3    1
(CC964182) BOIET84TR BO_1.4_1.6_KB_nuc Brassica oleracea gen...    46   3.3    1
(CP000413) Lactobacillus gasseri ATCC 33323, complete genome.      46   3.3    1
(EY345624) CAWZ14137.fwd CAWZ Helobdella robusta Primary Lat...    44   3.5    2
(AC201369) Strongylocentrotus purpuratus clone R3-17D12, WOR...    36   3.9    6
(AC122165) Medicago truncatula clone mth2-32m22, complete se...    34   4.6    8
(AC136973) Medicago truncatula clone mth2-24n22, complete se...    36   5.9    3
(AC025259) Homo sapiens 12 BAC RP11-1100L3 (Roswell Park Can...    34   6.1    2
(AP010013) Lotus japonicus genomic DNA, chromosome 2, clone:...    36   6.2    7
(AC117598) Mus musculus chromosome 1, clone RP23-398H16, com...    34   6.2    2
(AC008536) Homo sapiens chromosome 5 clone CTC-487M23, compl...    32   6.2    2
(AC209631) Zea mays chromosome 9 clone CH201-98N7; ZMMBBc009...    32   6.2    2
(AP007207) Mus musculus molossinus genomic DNA, chromosome 1...    34   6.2    2
(AC219036) Zea mays chromosome 9 clone ZMMBBb-141B3; ZMMBBb0...    32   6.3    2
(AC180794) Strongylocentrotus purpuratus clone R3-3073H18, W...    36   6.5    10
(BM162158) EST564681 PyBS Plasmodium yoelii yoelii cDNA clon...    34   6.9    3
(BX005334) Zebrafish DNA sequence from clone DKEY-61F9 in li...    32   7.5    8
(AQ502277) V6H2 mTn-3xHA/lacZ Insertion Library Saccharomyce...    34   7.5    2
(AC009986) Homo sapiens chromosome 10 clone RP11-346D6, comp...    40   8.1    7
(DB666919) Saccharomyces cerevisiae mRNA, clone: Y107_M16_F....    32   8.5    2
(FG781785) G1147P338RL20.T0 Anolis carolinensis pooled norma...    34   9.4    2

>(BJ375091) Dictyostelium discoideum cDNA clone:ddc17l11, 3' end,
            single read.
          Length = 686

 Score = 1358 bits (685), Expect = 0.0
 Identities = 685/685 (100%)
 Strand = Plus / Minus


Query: 626  cttcaaagttaattttagattcattcattattgttctatcaattcttagtcaaattttag 685
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686  cttcaaagttaattttagattcattcattattgttctatcaattcttagtcaaattttag 627


Query: 686  catggagatcatttgttttctcctttaaaacttatcaacgtacaaagagactattgagaa 745
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626  catggagatcatttgttttctcctttaaaacttatcaacgtacaaagagactattgagaa 567


Query: 746  gaaattcaactagatcacttttaactgtcaattggaaatcactcagttggaaaaccaaat 805
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566  gaaattcaactagatcacttttaactgtcaattggaaatcactcagttggaaaaccaaat 507


Query: 806  taagattctttaatctttggtttgtactttgtttaattagtaatgtattgacaattgctg 865
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506  taagattctttaatctttggtttgtactttgtttaattagtaatgtattgacaattgctg 447


Query: 866  gtgccattttggatttctttgaagtacctggtaccgttagttcaactgcaaccaaagtat 925
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446  gtgccattttggatttctttgaagtacctggtaccgttagttcaactgcaaccaaagtat 387


Query: 926  tgattggtcttggtactttgttatcttggattaatatgattagatatttagaatttgaca 985
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386  tgattggtcttggtactttgttatcttggattaatatgattagatatttagaatttgaca 327


Query: 986  caaaatcaacttctttaattcgtgctttaatcaatggtttaccagagataattcgattct 1045
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326  caaaatcaacttctttaattcgtgctttaatcaatggtttaccagagataattcgattct 267


Query: 1046 cggctggaagtctcccaattttcattggtttctgtttatttggtttaatggttttctctg 1105
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266  cggctggaagtctcccaattttcattggtttctgtttatttggtttaatggttttctctg 207


Query: 1106 agcatactctaagattcgcttcatttggtgaggctgctatcactcttttcggtttacaaa 1165
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206  agcatactctaagattcgcttcatttggtgaggctgctatcactcttttcggtttacaaa 147


Query: 1166 atggtgatgatgttcaagcaacttttcgtgcaactgaaaaagatcctatcatttcaaaaa 1225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146  atggtgatgatgttcaagcaacttttcgtgcaactgaaaaagatcctatcatttcaaaaa 87


Query: 1226 tgtactttttcgtatttgtcttcatctctgtctattgcatttccaaacttacatgcaatc 1285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86   tgtactttttcgtatttgtcttcatctctgtctattgcatttccaaacttacatgcaatc 27


Query: 1286 aggaatcttctattctcgttcaatc 1310
            |||||||||||||||||||||||||
Sbjct: 26   aggaatcttctattctcgttcaatc 2

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,598,754,728
Number of extensions: 98882099
Number of successful extensions: 7649939
Number of sequences better than 10.0: 65
Length of query: 1310
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1286
Effective length of database: 97,308,875,965
Effective search space: 125139214490990
Effective search space used: 125139214490990
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.24
Homology vs Protein 
Query= Contig-U08961-1 (Contig-U08961-1Q) /CSM_Contig/Contig-U08961-1Q.Seq.d
         (1310 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK292206_1(AK292206|pid:none) Homo sapiens cDNA FLJ77997 complet...   108   3e-22
(Q8TDD5) RecName: Full=Mucolipin-3;  &AF475085_1(AF475085|pid:no...   108   3e-22
AL358789_1(AL358789|pid:none) Human DNA sequence from clone RP11...   108   3e-22
BC079200_1(BC079200|pid:none) Rattus norvegicus mucolipin 3, mRN...   108   6e-22
(Q8R4F0) RecName: Full=Mucolipin-3;  &AF475086_1(AF475086|pid:no...   107   1e-21
BC106857_1(BC106857|pid:none) Mus musculus mucolipin 3, mRNA (cD...   107   1e-21
AK033008_1(AK033008|pid:none) Mus musculus 12 days embryo male w...   107   1e-21
BC073199_1(BC073199|pid:none) Xenopus laevis MGC80453 protein, m...   101   7e-20
CR855599_1(CR855599|pid:none) Xenopus tropicalis finished cDNA, ...   100   9e-20
(Q99J21) RecName: Full=Mucolipin-1; AltName: Full=Mucolipidin;  ...   100   9e-20
BC044140_1(BC044140|pid:none) Danio rerio mucolipin 2, mRNA (cDN...   100   9e-20
AL139150_1(AL139150|pid:none) Human DNA sequence from clone RP4-...    99   3e-19
AJ293659_1(AJ293659|pid:none) Homo sapiens mRNA for mucolipidin,...    99   4e-19
(Q9GZU1) RecName: Full=Mucolipin-1; AltName: Full=Mucolipidin; A...    99   4e-19
AF305579_1(AF305579|pid:none) Homo sapiens mucolipin 1 (MCOLN1) ...    99   4e-19
AK222673_1(AK222673|pid:none) Homo sapiens mRNA for mucolipin 1 ...    99   4e-19
AK294330_1(AK294330|pid:none) Homo sapiens cDNA FLJ54613 complet...    99   4e-19
BC099787_1(BC099787|pid:none) Rattus norvegicus mucolipin 2, mRN...    98   7e-19
(Q8K595) RecName: Full=Mucolipin-2;  &AF503575_1(AF503575|pid:no...    94   8e-18
AK014467_1(AK014467|pid:none) Mus musculus 14 days embryo liver ...    94   8e-18
BC029847_1(BC029847|pid:none) Mus musculus mucolipin 2, mRNA (cD...    94   8e-18
AK153290_1(AK153290|pid:none) Mus musculus bone marrow macrophag...    93   2e-17
AC006679_11(AC006679|pid:none) Caenorhabditis elegans cosmid R13...    93   2e-17
AC006679_12(AC006679|pid:none) Caenorhabditis elegans cosmid R13...    93   2e-17
AC006679_10(AC006679|pid:none) Caenorhabditis elegans cosmid R13...    93   2e-17
AC006679_13(AC006679|pid:none) Caenorhabditis elegans cosmid R13...    89   3e-16
FN317249_1(FN317249|pid:none) Schistosoma japonicum isolate Anhu...    86   2e-15
AE014296_3394(AE014296|pid:none) Drosophila melanogaster chromos...    85   7e-15
BC094263_1(BC094263|pid:none) Xenopus laevis hypothetical protei...    77   1e-12
BC118374_1(BC118374|pid:none) Bos taurus mucolipin 1, mRNA (cDNA...    74   9e-12
AM502225_98(AM502225|pid:none) Leishmania infantum chromosome 7.       57   2e-06
CT005246_99(CT005246|pid:none) Leishmania major strain Friedlin,...    56   3e-06
AM502244_96(AM502244|pid:none) Leishmania infantum chromosome 26.      48   9e-04
AK301924_1(AK301924|pid:none) Homo sapiens cDNA FLJ60937 complet...    47   0.001
AB168264_1(AB168264|pid:none) Macaca fascicularis testis cDNA cl...    47   0.002
AF118125_1(AF118125|pid:none) Homo sapiens polycystin-2-like pro...    47   0.002
CT005265_98(CT005265|pid:none) Leishmania major strain Friedlin,...    47   0.002
(Q9NZM6) RecName: Full=Polycystic kidney disease 2-like 2 protei...    47   0.002
AF171088_1(AF171088|pid:none) Homo sapiens MSTP080 (MST080) mRNA...    47   0.002
AK074965_1(AK074965|pid:none) Homo sapiens cDNA FLJ90484 fis, cl...    44   0.013
(O95180) RecName: Full=Voltage-dependent T-type calcium channel ...    44   0.013
DQ363528_1(DQ363528|pid:none) Homo sapiens low-voltage-activated...    44   0.013
DQ363527_1(DQ363527|pid:none) Homo sapiens low-voltage-activated...    44   0.013
DQ363526_1(DQ363526|pid:none) Homo sapiens low-voltage-activated...    44   0.013
DQ363529_1(DQ363529|pid:none) Homo sapiens low-voltage-activated...    44   0.013
AE006466_3(AE006466|pid:none) Homo sapiens 16p13.3 sequence sect...    44   0.013
AF223563_1(AF223563|pid:none) Homo sapiens low-voltage-activated...    44   0.013
AF073931_1(AF073931|pid:none) Homo sapiens low-voltage activated...    44   0.013
AF051946_1(AF051946|pid:none) Homo sapiens T-type calcium channe...    44   0.013
AK122452_1(AK122452|pid:none) Mus musculus mRNA for mKIAA4255 pr...    44   0.013
EF446617_1(EF446617|pid:none) Chlamydomonas reinhardtii PKD2 (PK...    44   0.017
AB365080_1(AB365080|pid:none) Oryzias latipes pkd2 mRNA for poly...    43   0.022
(Q9EQ60) RecName: Full=Voltage-dependent T-type calcium channel ...    43   0.029
DQ494476_1(DQ494476|pid:none) Homo sapiens T calcium channel alp...    42   0.037
AL645965_12(AL645965|pid:none) Mouse DNA sequence from clone RP2...    42   0.037
AF227746_1(AF227746|pid:none) Homo sapiens voltage-dependent cal...    42   0.037
DQ494474_1(DQ494474|pid:none) Homo sapiens T calcium channel alp...    42   0.037
DQ317412_1(DQ317412|pid:none) Mus musculus T-type calcium channe...    42   0.037
FB571395_1(FB571395|pid:none) Sequence 262 from Patent EP1865317.      42   0.037
AL645965_10(AL645965|pid:none) Mouse DNA sequence from clone RP2...    42   0.037
DQ494478_1(DQ494478|pid:none) Homo sapiens T calcium channel alp...    42   0.037
AJ012569_1(AJ012569|pid:none) Mus musculus mRNA for voltage-gate...    42   0.037
AL645965_9(AL645965|pid:none) Mouse DNA sequence from clone RP23...    42   0.037
AK296513_1(AK296513|pid:none) Homo sapiens cDNA FLJ51880 complet...    42   0.037
AF227751_1(AF227751|pid:none) Homo sapiens voltage-dependent cal...    42   0.037
DQ494473_1(DQ494473|pid:none) Homo sapiens T calcium channel alp...    42   0.037
AF227750_1(AF227750|pid:none) Homo sapiens voltage-dependent cal...    42   0.037
AF126966_1(AF126966|pid:none) Homo sapiens voltage-dependent cal...    42   0.037
AF227749_1(AF227749|pid:none) Homo sapiens voltage-dependent cal...    42   0.037
DQ494463_1(DQ494463|pid:none) Homo sapiens T calcium channel alp...    42   0.037
AF227745_1(AF227745|pid:none) Homo sapiens voltage-dependent cal...    42   0.037
DQ494475_1(DQ494475|pid:none) Homo sapiens T calcium channel alp...    42   0.037
DQ494477_1(DQ494477|pid:none) Homo sapiens T calcium channel alp...    42   0.037
AF227747_1(AF227747|pid:none) Homo sapiens voltage-dependent cal...    42   0.037
FB571397_1(FB571397|pid:none) Sequence 264 from Patent EP1865317.      42   0.037
BC057399_1(BC057399|pid:none) Mus musculus calcium channel, volt...    42   0.037
AL645965_16(AL645965|pid:none) Mouse DNA sequence from clone RP2...    42   0.037
AB032949_1(AB032949|pid:none) Homo sapiens mRNA for KIAA1123 pro...    42   0.037
(Q9Y5T3) RecName: Full=Voltage-dependent T-type calcium channel ...    42   0.037
DQ494467_1(DQ494467|pid:none) Homo sapiens T calcium channel alp...    42   0.037
AF368920_1(AF368920|pid:none) Caenorhabditis elegans voltage-dep...    42   0.049
AY322480_1(AY322480|pid:none) Caenorhabditis elegans T-type volt...    42   0.049
AY313899_1(AY313899|pid:none) Caenorhabditis elegans T-type calc...    42   0.049
AF086827_1(AF086827|pid:none) Rattus norvegicus low voltage-acti...    42   0.064
(Q9Z0Y8) RecName: Full=Voltage-dependent T-type calcium channel ...    42   0.064
DQ175629_1(DQ175629|pid:none) Danio rerio polycystin-2 (pkd2) mR...    42   0.064
AF393329_1(AF393329|pid:none) Homo sapiens voltage-dependent cal...    42   0.064
AB032946_1(AB032946|pid:none) Homo sapiens mRNA for KIAA1120 pro...    42   0.064
AY618926_1(AY618926|pid:none) Danio rerio PKD2 mRNA, complete cd...    41   0.11
Y14105_1(Y14105|pid:none) Mus musculus pkd2 exon 1 and joined CDS.     40   0.19
(O35245) RecName: Full=Polycystin-2; AltName: Full=Polycystic ki...    40   0.19
AJ719584_1(AJ719584|pid:none) Gallus gallus mRNA for hypothetica...    40   0.19
AM920427_551(AM920427|pid:none) Penicillium chrysogenum Wisconsi...    40   0.19
AE014298_877(AE014298|pid:none) Drosophila melanogaster chromoso...    40   0.19
AE014298_876(AE014298|pid:none) Drosophila melanogaster chromoso...    40   0.19
AK053502_1(AK053502|pid:none) Mus musculus 0 day neonate eyeball...    40   0.19
AF004873_1(AF004873|pid:none) Homo sapiens autosomal dominant po...    40   0.24
G02640(G02640) polycystic kidney disease protein 2 - human (frag...    40   0.24
(Q13563) RecName: Full=Polycystin-2; AltName: Full=Polycystic ki...    40   0.24
AM904552_1(AM904552|pid:none) Carassius carassius partial mRNA f...    39   0.32
CP000514_3109(CP000514|pid:none) Marinobacter aquaeolei VT8, com...    39   0.41
AC159437_12(AC159437|pid:none) Trypanosoma brucei chromosome 7 c...    39   0.41
DQ447154_1(DQ447154|pid:none) Gammarus fossarum clone 2 mucolipi...    39   0.54
AF484084_1(AF484084|pid:none) Lymnaea stagnalis voltage-dependen...    37   1.6
AC159407_32(AC159407|pid:none) Trypanosoma brucei chromosome 8 c...    37   1.6
(Q02294) RecName: Full=Voltage-dependent N-type calcium channel ...    36   2.7
FN357606_3(FN357606|pid:none) Schistosoma mansoni genome sequenc...    36   2.7
AL732525_3(AL732525|pid:none) Mouse DNA sequence from clone RP23...    36   2.7
AF055477_1(AF055477|pid:none) Rattus norvegicus pore-forming cal...    36   2.7
CT573073_821(CT573073|pid:none) Kuenenia stuttgartiensis genome ...    36   2.7
AM422018_706(AM422018|pid:none) Candidatus Phytoplasma australie...    35   4.6
DQ988048_1(DQ988048|pid:none) Strongylocentrotus purpuratus rece...    35   4.6
CP000109_545(CP000109|pid:none) Thiomicrospira crunogena XCL-2, ...    35   4.6
AL591424_4(AL591424|pid:none) Human DNA sequence from clone RP11...    35   7.8
CP001327_681(CP001327|pid:none) Micromonas sp. RCC299 chromosome...    35   7.8
CP001107_1764(CP001107|pid:none) Eubacterium rectale ATCC 33656,...    35   7.8
AE009442_1973(AE009442|pid:none) Xylella fastidiosa Temecula1, c...    35   7.8
Y08350_1(Y08350|pid:none) X.laevis gene encoding olfactory recep...    35   7.8
(Q00975) RecName: Full=Voltage-dependent N-type calcium channel ...    35   7.8

>AK292206_1(AK292206|pid:none) Homo sapiens cDNA FLJ77997 complete
            cds, highly similar to Homo sapiens mucolipin 3 (MCOLN3),
            mRNA.
          Length = 553

 Score =  108 bits (271), Expect = 3e-22
 Identities = 66/219 (30%), Positives = 109/219 (49%), Gaps = 5/219 (2%)
 Frame = +1

Query: 634  LILDSFIIVLSILSQILAWRSFVFSFKTYQXXXXXXXXXXXXXXXXVNWKSLSWKTKLRF 813
            +I D+F+I+  ++S IL  RS +   +  Q                   K +S   ++ F
Sbjct: 286  MIFDAFVILTCLVSLILCIRSVIRGLQLQQEFVNFFLLHYK--------KEVSVSDQMEF 337

Query: 814  FNLWFVLCLISNVLTIAGAILDF-FEVPGTVSSTATKVLIGLGTLLSWINMIRYLEFDTK 990
             N W+++ +IS++LTI G+IL    +     S     +L+G  T+L W+ +IRYL F  K
Sbjct: 338  VNGWYIMIIISDILTIIGSILKMEIQAKSLTSYDVCSILLGTSTMLVWLGVIRYLGFFAK 397

Query: 991  STSLIRALINGLPEIIRFSAGSLPIFIGFCLFGLMVFSEHTLRFASFGEAAITLFGLQNG 1170
               LI  L   LP +IRF   +  I++G+C  G +V   +  +F S    +  LF L NG
Sbjct: 398  YNLLILTLQAALPNVIRFCCCAAMIYLGYCFCGWIVLGPYHDKFRSLNMVSECLFSLING 457

Query: 1171 DDVQATFRATEKDP----IISKMYFFVFVFISVYCISKL 1275
            DD+ ATF   ++      + S++Y + F+ + +Y I  L
Sbjct: 458  DDMFATFAKMQQKSYLVWLFSRIYLYSFISLFIYMILSL 496

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,965,624,645
Number of extensions: 42122859
Number of successful extensions: 97211
Number of sequences better than 10.0: 119
Number of HSP's gapped: 97160
Number of HSP's successfully gapped: 119
Length of query: 436
Length of database: 1,040,966,779
Length adjustment: 131
Effective length of query: 305
Effective length of database: 621,205,444
Effective search space: 189467660420
Effective search space used: 189467660420
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.55  gvh: 0.27  alm: 0.23  top: 0.03  tms: 0.33  mit: 0.26  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: plasma membrane
	 28.0 %: endoplasmic reticulum
	 12.0 %: mitochondrial
	 12.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U08961-1 is pla
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0