Contig-U08947-1
Contig ID Contig-U08947-1
Contig update 2002. 9.13
Contig sequence
>Contig-U08947-1 (Contig-U08947-1Q) /CSM_Contig/Contig-U08947-1Q.Seq.d
TAAGATATAAAGAAGGTAGTGAACAAGATATTATTGAATATAAATTCATA
GATTCAGAGAAACGTATAAATCATGATAGTGAATTAATGAAAATGCANGA
TAGGATCTCAACTTTACAGAATTACTTTTATCTAGAT----------CGA
CAGTAGAAGAATTGAATGATCTTGGATTCGGGTACAGATCAAAATACATT
GTTGAATCATGTAAACAAGTTATTGAAAAAGGTGGTGAACAATGGTTAAA
TCAGTTGAAATTAAAACCACATTTAGAGGTACAAAAAGAGTTGACAACAT
TAATGGGTGTTGGTAAGAAAGTCGCTGATTGCGTATCATTAATGTCAATG
GATAATCCAAATGCCGTTGCAATCGATACTCATATCTATCAAATCTCTAA
AAAATATCTACCCTCTCTAGCAAACAGCTCCTCTTCATTAACTCCAAAAC
TCTATCAAGACATTAGTAACCTTTGGGAATCTATTTTCGGTGATCATGCA
GGTTGGGCTCAAACTATACTCTTTGCAAATGAATTATCAGTATTTAAAGA
AAAATCAAAAAATATTAAAATTAAAAAAGAAATAAATCAAAATAATAATA
ATAATAATCTAAAAATTGAATTAAAAAATGAAAAAGAAAATTTAAAAAAT
GAAAAAGAAAATTTAAAAAGAAAAATTATAACAAGATCAACCACTTCTAC
TACTTCTACTACAACAAATACTATAAATATATTTAATCCTAAAATAAAAA
AAAGAAATAAA

Gap gap included
Contig length 751
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 1823548
End point 1822792
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U08947
List of clone(s)

est1=CFG536F,1,138
est2=CFG536Z,139,753
Translated Amino Acid sequence
RYKEGSEQDIIEYKFIDSEKRINHDSELMKMXDRISTLQNYFYLD---

---TVEELNDLGFGYRSKYIVESCKQVIEKGGEQWLNQLKLKPHLEVQKELTTLMGVGKK
VADCVSLMSMDNPNAVAIDTHIYQISKKYLPSLANSSSSLTPKLYQDISNLWESIFGDHA
GWAQTILFANELSVFKEKSKNIKIKKEINQNNNNNNLKIELKNEKENLKNEKENLKRKII
TRSTTSTTSTTTNTINIFNPKIKKRNK


Translated Amino Acid sequence (All Frames)
Frame A:
*dikkvvnkillnins*iqrnv*imivn**kcxigsqlyritfi*---

---rq*kn*mildsgtdqntllnhvnkllkkvvnng*is*n*nhi*rykks*qh*wvlvr
ksliayh*cqwiiqmplqsilisikslkniypl*qtaplh*lqnsiktlvtfgnlfsvim
qvglklyslqmnyqylkknqkilklkkk*ikiiiiii*kln*kmkkki*kmkkki*kekl
*qdqpllllllqqil*iylilk*kkei

Frame B:
ki*rr**tryy*i*ihrfretyks***inenax*dlnftelllsr---

---dsrrie*swirvqikihc*im*tsy*krw*tmvksveikttfrgtkrvdningcw*e
sr*lriinvng*skcrcnrysylsnl*kistlsskqllfinsktlsrh**plgiyfr*sc
rlgsnytlck*iisi*rkikky*n*krnksk*****skn*ikk*krkfkk*krkfkkkny
nkinhfyyfyynkyykyi*s*nkkkk*

Frame C:
RYKEGSEQDIIEYKFIDSEKRINHDSELMKMXDRISTLQNYFYLD---

---TVEELNDLGFGYRSKYIVESCKQVIEKGGEQWLNQLKLKPHLEVQKELTTLMGVGKK
VADCVSLMSMDNPNAVAIDTHIYQISKKYLPSLANSSSSLTPKLYQDISNLWESIFGDHA
GWAQTILFANELSVFKEKSKNIKIKKEINQNNNNNNLKIELKNEKENLKNEKENLKRKII
TRSTTSTTSTTTNTINIFNPKIKKRNK

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U08947-1 (Contig-U08947-1Q)
/CSM_Contig/Contig-U08947-1Q.Seq.d
(761 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U08947-1 (Contig-U08947-1Q) /CSM_Contig/Conti... 1011 0.0
Contig-U08537-1 (Contig-U08537-1Q) /CSM_Contig/Conti... 46 6e-05
Contig-U12243-1 (Contig-U12243-1Q) /CSM_Contig/Conti... 38 0.014
Contig-U11314-1 (Contig-U11314-1Q) /CSM_Contig/Conti... 38 0.014
Contig-U14079-1 (Contig-U14079-1Q) /CSM_Contig/Conti... 36 0.053
Contig-U13914-1 (Contig-U13914-1Q) /CSM_Contig/Conti... 36 0.053
Contig-U08180-1 (Contig-U08180-1Q) /CSM_Contig/Conti... 36 0.053
Contig-U13925-1 (Contig-U13925-1Q) /CSM_Contig/Conti... 34 0.21
Contig-U12507-1 (Contig-U12507-1Q) /CSM_Contig/Conti... 34 0.21
Contig-U12214-1 (Contig-U12214-1Q) /CSM_Contig/Conti... 34 0.21

>Contig-U08947-1 (Contig-U08947-1Q) /CSM_Contig/Contig-U08947-1Q.Seq.d
Length = 761

Score = 1011 bits (510), Expect = 0.0
Identities = 543/543 (100%)
Strand = Plus / Plus


Query: 1 taagatataaagaaggtagtgaacaagatattattgaatataaattcatagattcagaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taagatataaagaaggtagtgaacaagatattattgaatataaattcatagattcagaga 60


Query: 61 aacgtataaatcatgatagtgaattaatgaaaatgcangataggatctcaactttacaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aacgtataaatcatgatagtgaattaatgaaaatgcangataggatctcaactttacaga 120


Query: 121 attacttttatctagatnnnnnnnnnncgacagtagaagaattgaatgatcttggattcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attacttttatctagatnnnnnnnnnncgacagtagaagaattgaatgatcttggattcg 180


Query: 181 ggtacagatcaaaatacattgttgaatcatgtaaacaagttattgaaaaaggtggtgaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggtacagatcaaaatacattgttgaatcatgtaaacaagttattgaaaaaggtggtgaac 240


Query: 241 aatggttaaatcagttgaaattaaaaccacatttagaggtacaaaaagagttgacaacat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aatggttaaatcagttgaaattaaaaccacatttagaggtacaaaaagagttgacaacat 300


Query: 301 taatgggtgttggtaagaaagtcgctgattgcgtatcattaatgtcaatggataatccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taatgggtgttggtaagaaagtcgctgattgcgtatcattaatgtcaatggataatccaa 360


Query: 361 atgccgttgcaatcgatactcatatctatcaaatctctaaaaaatatctaccctctctag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atgccgttgcaatcgatactcatatctatcaaatctctaaaaaatatctaccctctctag 420


Query: 421 caaacagctcctcttcattaactccaaaactctatcaagacattagtaacctttgggaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 caaacagctcctcttcattaactccaaaactctatcaagacattagtaacctttgggaat 480


Query: 481 ctattttcggtgatcatgcaggttgggctcaaactatactctttgcaaatgaattatcag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ctattttcggtgatcatgcaggttgggctcaaactatactctttgcaaatgaattatcag 540


Query: 541 tat 543
|||
Sbjct: 541 tat 543


Score = 139 bits (70), Expect = 5e-33
Identities = 70/70 (100%)
Strand = Plus / Plus


Query: 676 ttataacaagatcaaccacttctactacttctactacaacaaatactataaatatattta 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ttataacaagatcaaccacttctactacttctactacaacaaatactataaatatattta 735


Query: 736 atcctaaaat 745
||||||||||
Sbjct: 736 atcctaaaat 745


>Contig-U08537-1 (Contig-U08537-1Q) /CSM_Contig/Contig-U08537-1Q.Seq.d
Length = 383

Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 699 actacttctactacaacaaatac 721
|||||||||||||||||||||||
Sbjct: 27 actacttctactacaacaaatac 49


>Contig-U12243-1 (Contig-U12243-1Q) /CSM_Contig/Contig-U12243-1Q.Seq.d
Length = 1637

Score = 38.2 bits (19), Expect = 0.014
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 362 tgccgttgcaatcgatact 380
|||||||||||||||||||
Sbjct: 587 tgccgttgcaatcgatact 605


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6846
Number of Sequences: 6905
Number of extensions: 6846
Number of successful extensions: 740
Number of sequences better than 10.0: 88
length of query: 761
length of database: 5,674,871
effective HSP length: 16
effective length of query: 745
effective length of database: 5,564,391
effective search space: 4145471295
effective search space used: 4145471295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.13
Homology vs DNA
Query= Contig-U08947-1 (Contig-U08947-1Q) /CSM_Contig/Contig-U08947-1Q.Seq.d
(761 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ372825) Dictyostelium discoideum cDNA clone:ddc14g09, 3' ... 787 0.0 2
(BJ359402) Dictyostelium discoideum cDNA clone:ddc14g09, 5' ... 266 1e-66 1
(AC179825) Strongylocentrotus purpuratus clone R3-1012K7, WO... 54 0.008 1
(BH991974) oen97e08.b1 B.oleracea002 Brassica oleracea genom... 50 0.12 1
(BX470135) Zebrafish DNA sequence from clone RP71-15H20 in l... 48 0.49 1
(CS468846) Sequence 37 from Patent EP1748080. 48 0.49 1
(CS468845) Sequence 36 from Patent EP1748080. 48 0.49 1
(CS419323) Sequence 37 from Patent WO2006094836. 48 0.49 1
(CS419322) Sequence 36 from Patent WO2006094836. 48 0.49 1
(CT573121) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.49 1
(AC184378) Strongylocentrotus purpuratus clone R3-1017J14, W... 48 0.49 1
(AC176691) Strongylocentrotus purpuratus clone R3-112B17, WO... 48 0.49 1
(AC176054) Strongylocentrotus purpuratus clone R3-3024F13, W... 48 0.49 1
(DX098224) AU_BAC019B2C12_T7 CHORI212 Ictalurus punctatus ge... 48 0.49 1
(EY379942) CAXA1820.fwd CAXA Helobdella robusta Subtracted L... 48 0.49 1
(AC174256) Strongylocentrotus purpuratus clone R3-1113F11, W... 36 0.76 6
(BX000997) Zebrafish DNA sequence from clone CH211-151C7 in ... 42 1.1 4
(CR735144) Zebrafish DNA sequence from clone DKEY-241O6 in l... 46 1.9 1
(CR392032) Zebrafish DNA sequence from clone DKEYP-64A3 in l... 46 1.9 1
(BX927382) Zebrafish DNA sequence from clone DKEY-168I13 in ... 46 1.9 1
(AL954143) Zebrafish DNA sequence from clone CH211-206A7 in ... 46 1.9 1
(AC160131) Mus musculus BAC clone RP23-226D9 from chromosome... 46 1.9 1
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 46 1.9 1
(AC109860) Rattus norvegicus clone CH230-31C24, *** SEQUENCI... 46 1.9 1
(CU633308) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.9 1
(CU457775) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.9 1
(BX957330) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 46 1.9 1
(AC201387) Strongylocentrotus purpuratus clone R3-17G8, WORK... 46 1.9 1
(AC189639) Brassica rapa subsp. pekinensis clone KBrS005O12,... 46 1.9 1
(AC184345) Strongylocentrotus purpuratus clone R3-45E24, WOR... 46 1.9 1
(AC184310) Strongylocentrotus purpuratus clone R3-4011O16, W... 46 1.9 1
(AC184298) Strongylocentrotus purpuratus clone R3-37J6, WORK... 46 1.9 1
(AC181550) Strongylocentrotus purpuratus clone R3-7F22, WORK... 46 1.9 1
(AC180815) Strongylocentrotus purpuratus clone R3-3024N5, WO... 46 1.9 1
(AC180793) Strongylocentrotus purpuratus clone R3-3073F24, W... 46 1.9 1
(AC180602) Strongylocentrotus purpuratus clone R3-3092N05, W... 46 1.9 1
(AC180439) Strongylocentrotus purpuratus clone R3-3102J01, W... 46 1.9 1
(AC180346) Strongylocentrotus purpuratus clone R3-3116K16, W... 46 1.9 1
(AC180278) Strongylocentrotus purpuratus clone R3-3008N14, W... 46 1.9 1
(AC180269) Strongylocentrotus purpuratus clone R3-3123J22, W... 46 1.9 1
(AC178644) Strongylocentrotus purpuratus clone R3-3007M8, WO... 46 1.9 1
(AC178068) Strongylocentrotus purpuratus clone R3-3059B15, W... 46 1.9 1
(AC177953) Strongylocentrotus purpuratus clone R3-1117P15, W... 46 1.9 1
(AC177525) Strongylocentrotus purpuratus clone R3-9O6, WORKI... 46 1.9 1
(AC176725) Strongylocentrotus purpuratus clone R3-3096I11, W... 46 1.9 1
(AC175974) Strongylocentrotus purpuratus clone R3-17G09, WOR... 46 1.9 1
(DX999798) CHORI103-54N1.TV.1 CHORI103 Schistosoma mansoni g... 46 1.9 1
(DH496027) Monosiga ovata DNA, fosmid clone: MOF-060H11, gen... 46 1.9 1
(DH491663) Monosiga ovata DNA, fosmid clone: MOF-052J07, gen... 46 1.9 1
(BJ400432) Dictyostelium discoideum cDNA clone:dds13d07, 3' ... 46 1.9 1
(CU062478) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 2.6 2
(BJ407963) Dictyostelium discoideum cDNA clone:dds44a07, 3' ... 36 3.2 3
(EG959121) AU_Ich_008C_B10 Whole organism normalized cDNA li... 40 3.2 2
(BJ347966) Dictyostelium discoideum cDNA clone:dda31c19, 3' ... 36 3.3 3
(BJ350533) Dictyostelium discoideum cDNA clone:dda40n01, 3' ... 36 3.4 3
(BJ355867) Dictyostelium discoideum cDNA clone:dda58a15, 3' ... 36 3.7 3
(BX323062) Zebrafish DNA sequence from clone DKEYP-38H2 in l... 32 3.7 2
(CU640413) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 3.7 2
(BJ408197) Dictyostelium discoideum cDNA clone:dds45d01, 3' ... 36 3.7 3
(BJ354898) Dictyostelium discoideum cDNA clone:dda55i04, 3' ... 36 3.8 3
(BJ349162) Dictyostelium discoideum cDNA clone:dda35i13, 3' ... 36 3.8 3
(BJ348461) Dictyostelium discoideum cDNA clone:dda33f10, 3' ... 36 3.8 3
(BJ405070) Dictyostelium discoideum cDNA clone:dds30c15, 3' ... 36 3.8 3
(BJ353058) Dictyostelium discoideum cDNA clone:dda48h19, 3' ... 36 3.8 3
(BJ355604) Dictyostelium discoideum cDNA clone:dda57j17, 3' ... 36 3.8 3
(BJ358312) Dictyostelium discoideum cDNA clone:dda56p19, 3' ... 36 3.9 3
(BJ353036) Dictyostelium discoideum cDNA clone:dda48c20, 3' ... 36 4.0 3
(BJ408235) Dictyostelium discoideum cDNA clone:dds45l04, 3' ... 36 4.1 3
(BJ350504) Dictyostelium discoideum cDNA clone:dda40g05, 3' ... 36 4.1 3
(BJ355467) Dictyostelium discoideum cDNA clone:dda57n04, 3' ... 36 4.1 3
(BJ355021) Dictyostelium discoideum cDNA clone:dda55b16, 3' ... 36 4.2 3
(BJ352959) Dictyostelium discoideum cDNA clone:dda48b17, 3' ... 36 4.2 3
(BJ350223) Dictyostelium discoideum cDNA clone:dda39l05, 3' ... 36 4.3 3
(BJ347810) Dictyostelium discoideum cDNA clone:dda31b11, 3' ... 36 4.3 3
(BJ406886) Dictyostelium discoideum cDNA clone:dds36c24, 3' ... 36 4.3 3
(BJ406514) Dictyostelium discoideum cDNA clone:dds35d14, 3' ... 36 4.3 3
(BJ358264) Dictyostelium discoideum cDNA clone:dda56f23, 3' ... 36 4.3 3
(BJ404039) Dictyostelium discoideum cDNA clone:dds27i04, 3' ... 36 4.4 3
(BJ352635) Dictyostelium discoideum cDNA clone:dda47l07, 3' ... 36 4.4 3
(BJ353181) Dictyostelium discoideum cDNA clone:dda49b11, 3' ... 36 4.4 3
(BJ406533) Dictyostelium discoideum cDNA clone:dds35h17, 3' ... 36 4.4 3
(BJ356113) Dictyostelium discoideum cDNA clone:dda59e08, 3' ... 36 4.4 3
(BJ349011) Dictyostelium discoideum cDNA clone:dda35g06, 3' ... 36 4.6 3
(BJ355143) Dictyostelium discoideum cDNA clone:dda55k19, 3' ... 36 4.6 3
(BJ350530) Dictyostelium discoideum cDNA clone:dda40m02, 3' ... 36 4.6 3
(BJ403566) Dictyostelium discoideum cDNA clone:dds25e17, 3' ... 36 4.7 3
(BJ354859) Dictyostelium discoideum cDNA clone:dda55a06, 3' ... 36 4.9 3
(BJ348642) Dictyostelium discoideum cDNA clone:dda33i24, 3' ... 36 5.0 3
(CW951922) TcB37.3_C04_SP6 Tribolium BAC library Tribolium c... 42 5.2 2
(BJ353012) Dictyostelium discoideum cDNA clone:dda48n16, 3' ... 36 5.3 3
(BJ350022) Dictyostelium discoideum cDNA clone:dda38n08, 3' ... 36 5.4 3
(BJ357643) Dictyostelium discoideum cDNA clone:dda64a12, 3' ... 36 5.4 3
(BJ349825) Dictyostelium discoideum cDNA clone:dda37c21, 3' ... 36 5.4 3
(BJ355202) Dictyostelium discoideum cDNA clone:dda56f02, 3' ... 36 5.4 3
(BJ350253) Dictyostelium discoideum cDNA clone:dda39b10, 3' ... 36 5.4 3
(AC175928) Strongylocentrotus purpuratus clone R3-3038J3, WO... 42 6.3 3
(AC229682) Solanum lycopersicum chromosome 12 clone LE_HBa-7... 44 7.3 2
(AC174873) Strongylocentrotus purpuratus clone R3-3112M6, WO... 40 7.3 4
(CU464202) Zebrafish DNA sequence from clone CH1073-293O9 in... 44 7.6 1
(CU207260) Zebrafish DNA sequence from clone DKEY-190J2 in l... 44 7.6 1

>(BJ372825) Dictyostelium discoideum cDNA clone:ddc14g09, 3' end,
single read.
Length = 615

Score = 787 bits (397), Expect(2) = 0.0
Identities = 397/397 (100%)
Strand = Plus / Minus


Query: 148 cgacagtagaagaattgaatgatcttggattcgggtacagatcaaaatacattgttgaat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 cgacagtagaagaattgaatgatcttggattcgggtacagatcaaaatacattgttgaat 556


Query: 208 catgtaaacaagttattgaaaaaggtggtgaacaatggttaaatcagttgaaattaaaac 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 catgtaaacaagttattgaaaaaggtggtgaacaatggttaaatcagttgaaattaaaac 496


Query: 268 cacatttagaggtacaaaaagagttgacaacattaatgggtgttggtaagaaagtcgctg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cacatttagaggtacaaaaagagttgacaacattaatgggtgttggtaagaaagtcgctg 436


Query: 328 attgcgtatcattaatgtcaatggataatccaaatgccgttgcaatcgatactcatatct 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 attgcgtatcattaatgtcaatggataatccaaatgccgttgcaatcgatactcatatct 376


Query: 388 atcaaatctctaaaaaatatctaccctctctagcaaacagctcctcttcattaactccaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 atcaaatctctaaaaaatatctaccctctctagcaaacagctcctcttcattaactccaa 316


Query: 448 aactctatcaagacattagtaacctttgggaatctattttcggtgatcatgcaggttggg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aactctatcaagacattagtaacctttgggaatctattttcggtgatcatgcaggttggg 256


Query: 508 ctcaaactatactctttgcaaatgaattatcagtatt 544
|||||||||||||||||||||||||||||||||||||
Sbjct: 255 ctcaaactatactctttgcaaatgaattatcagtatt 219

Score = 139 bits (70), Expect(2) = 0.0
Identities = 70/70 (100%)
Strand = Plus / Minus


Query: 676 ttataacaagatcaaccacttctactacttctactacaacaaatactataaatatattta 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 ttataacaagatcaaccacttctactacttctactacaacaaatactataaatatattta 28


Query: 736 atcctaaaat 745
||||||||||
Sbjct: 27 atcctaaaat 18

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 667,801,943
Number of extensions: 38729671
Number of successful extensions: 3137209
Number of sequences better than 10.0: 155
Length of query: 761
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 737
Effective length of database: 97,308,875,965
Effective search space: 71716641586205
Effective search space used: 71716641586205
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.24
Homology vs Protein
Query= Contig-U08947-1 (Contig-U08947-1Q) /CSM_Contig/Contig-U08947-1Q.Seq.d
(761 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

BC097662_1(BC097662|pid:none) Xenopus laevis hypothetical protei... 132 1e-29
AP008208_1529(AP008208|pid:none) Oryza sativa (japonica cultivar... 115 1e-24
AP004038_18(AP004038|pid:none) Oryza sativa Japonica Group genom... 115 1e-24
AL935148_1(AL935148|pid:none) Zebrafish DNA sequence from clone ... 115 1e-24
(Q9V3I8) RecName: Full=N-glycosylase/DNA lyase; AltName: Full=dO... 115 1e-24
BT012455_1(BT012455|pid:none) Drosophila melanogaster RE57519 fu... 115 1e-24
AF160942_1(AF160942|pid:none) Drosophila melanogaster clone LD19... 115 1e-24
BC122183_1(BC122183|pid:none) Danio rerio hypothetical protein L... 112 1e-23
BT042026_1(BT042026|pid:none) Zea mays full-length cDNA clone ZM... 112 2e-23
T46962(T46962) 8-oxoguanine DNA-glycosylase [validated] - mouse ... 109 1e-22
Y13479_1(Y13479|pid:none) Mus musculus mRNA for 8-oxoguanine DNA... 107 3e-22
(O70249) RecName: Full=N-glycosylase/DNA lyase; Includes: RecN... 107 5e-22
AC007727_14(AC007727|pid:none) Arabidopsis thaliana chromosome 1... 106 9e-22
AK289858_1(AK289858|pid:none) Homo sapiens cDNA FLJ77016 complet... 102 2e-20
AJ131341_1(AJ131341|pid:none) Homo sapiens ogg1 gene, exons 1-7.... 99 1e-19
FM992694_357(FM992694|pid:none) Candida dubliniensis CD36 chromo... 98 3e-19
U88620_1(U88620|pid:none) Human 8-hydroxyguanine glycosylase (hM... 97 4e-19
FN357545_20(FN357545|pid:none) Schistosoma mansoni genome sequen... 97 5e-19
AB019532_1(AB019532|pid:none) Homo sapiens mRNA for OGG1 protein... 96 9e-19
AB384844_1(AB384844|pid:none) Synthetic construct DNA, clone: pF... 96 9e-19
AB019530_1(AB019530|pid:none) Homo sapiens mRNA for OGG1 protein... 96 1e-18
U96710_1(U96710|pid:none) Human 8-oxoguanine DNA glycosylase (ho... 96 2e-18
CP001160_635(CP001160|pid:none) Thalassiosira pseudonana CCMP133... 95 3e-18
AM270126_11(AM270126|pid:none) Aspergillus niger contig An07c008... 94 5e-18
CR954216_221(CR954216|pid:none) Ostreococcus tauri strain OTTH05... 93 1e-17
AM920427_595(AM920427|pid:none) Penicillium chrysogenum Wisconsi... 92 1e-17
CP000595_173(CP000595|pid:none) Ostreococcus lucimarinus CCE9901... 91 3e-17
CP000496_632(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 90 9e-17
CR940347_255(CR940347|pid:none) Theileria annulata strain Ankara... 88 3e-16
AP007151_220(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 87 7e-16
CP001333_197(CP001333|pid:none) Micromonas sp. RCC299 chromosome... 85 2e-15
AL844508_170(AL844508|pid:none) Plasmodium falciparum 3D7 chromo... 82 2e-14
FN392320_1032(FN392320|pid:none) Pichia pastoris GS115 chromosom... 80 9e-14
CR380958_479(CR380958|pid:none) Candida glabrata strain CBS138 c... 78 3e-13
EU016589_13(EU016589|pid:none) Uncultured Group I marine crenarc... 72 1e-11
AE016818_472(AE016818|pid:none) Ashbya gossypii (= Eremothecium ... 72 2e-11
AL590448_78(AL590448|pid:none) chromosome VIII of strain GB-M1 o... 71 3e-11
CP000866_1536(CP000866|pid:none) Nitrosopumilus maritimus SCM1, ... 70 9e-11
CP001365_1499(CP001365|pid:none) Halorubrum lacusprofundi ATCC 4... 67 6e-10
CR382122_216(CR382122|pid:none) Kluyveromyces lactis strain NRRL... 67 8e-10
CP000254_989(CP000254|pid:none) Methanospirillum hungatei JF-1, ... 65 2e-09
CP000780_656(CP000780|pid:none) Candidatus Methanoregula boonei ... 64 4e-09
AE004437_978(AE004437|pid:none) Halobacterium sp. NRC-1, complet... 62 3e-08
AM494957_167(AM494957|pid:none) Leishmania braziliensis chromoso... 61 3e-08
CP000679_1443(CP000679|pid:none) Caldicellulosiruptor saccharoly... 60 6e-08
CP000853_2412(CP000853|pid:none) Alkaliphilus oremlandii OhILAs,... 60 6e-08
CP001107_436(CP001107|pid:none) Eubacterium rectale ATCC 33656, ... 60 1e-07
CP000724_813(CP000724|pid:none) Alkaliphilus metalliredigens QYM... 59 1e-07
AM502252_173(AM502252|pid:none) Leishmania infantum chromosome 34. 58 4e-07
CP000099_1946(CP000099|pid:none) Methanosarcina barkeri str. Fus... 57 6e-07
AJ536611_1(AJ536611|pid:none) Trypanosoma brucei mRNA for putati... 57 6e-07
CP000108_1000(CP000108|pid:none) Chlorobium chlorochromatii CaD3... 57 8e-07
AP008971_888(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA,... 57 8e-07
CR936257_1868(CR936257|pid:none) Natronomonas pharaonis DSM 2160... 56 1e-06
CP001104_485(CP001104|pid:none) Eubacterium eligens ATCC 27750, ... 56 1e-06
CP000300_1032(CP000300|pid:none) Methanococcoides burtonii DSM 6... 56 1e-06
CP000885_1999(CP000885|pid:none) Clostridium phytofermentans ISD... 56 1e-06
CT005271_226(CT005271|pid:none) Leishmania major strain Friedlin... 56 1e-06
CP001108_1127(CP001108|pid:none) Prosthecochloris aestuarii DSM ... 54 4e-06
AE001437_2666(AE001437|pid:none) Clostridium acetobutylicum ATCC... 54 4e-06
CP000559_1459(CP000559|pid:none) Methanocorpusculum labreanum Z,... 54 7e-06
CP000568_2033(CP000568|pid:none) Clostridium thermocellum ATCC 2... 53 9e-06
FN375505_1(FN375505|pid:none) Schistosoma mansoni genome sequenc... 51 4e-05
CR450703_7(CR450703|pid:none) Zebrafish DNA sequence from clone ... 51 4e-05
CP000102_33(CP000102|pid:none) Methanosphaera stadtmanae DSM 309... 50 8e-05
CP001110_1219(CP001110|pid:none) Pelodictyon phaeoclathratiforme... 49 2e-04
AE008384_471(AE008384|pid:none) Methanosarcina mazei strain Goe1... 48 3e-04
AE008691_1646(AE008691|pid:none) Thermoanaerobacter tengcongensi... 47 5e-04
CP000975_941(CP000975|pid:none) Methylacidiphilum infernorum V4,... 47 6e-04
CP000488_852(CP000488|pid:none) Candidatus Ruthia magnifica str.... 47 6e-04
CP001078_335(CP001078|pid:none) Clostridium botulinum E3 str. Al... 47 6e-04
CP000233_678(CP000233|pid:none) Lactobacillus salivarius UCC118,... 47 8e-04
BA000016_2293(BA000016|pid:none) Clostridium perfringens str. 13... 47 8e-04
CP001032_1971(CP001032|pid:none) Opitutus terrae PB90-1, complet... 47 8e-04
CP000939_3300(CP000939|pid:none) Clostridium botulinum B1 str. O... 47 8e-04
CP000924_711(CP000924|pid:none) Thermoanaerobacter pseudethanoli... 47 8e-04
CP000246_2492(CP000246|pid:none) Clostridium perfringens ATCC 13... 46 0.001
CP000312_2203(CP000312|pid:none) Clostridium perfringens SM101, ... 46 0.001
AM180355_199(AM180355|pid:none) Clostridium difficile 630 comple... 46 0.001
AB037879_1(AB037879|pid:none) Homo sapiens mRNA for OGG1 type 1e... 46 0.001
AE008691_528(AE008691|pid:none) Thermoanaerobacter tengcongensis... 46 0.001
CP001083_3423(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 45 0.002
CP000962_3284(CP000962|pid:none) Clostridium botulinum A3 str. L... 45 0.002
AP009049_3015(AP009049|pid:none) Clostridium kluyveri NBRC 12016... 45 0.003
CP001099_937(CP001099|pid:none) Chlorobaculum parvum NCIB 8327, ... 44 0.004
CP001056_349(CP001056|pid:none) Clostridium botulinum B str. Ekl... 43 0.009
AM412317_207(AM412317|pid:none) Clostridium botulinum A str. ATC... 43 0.009
CP000096_1057(CP000096|pid:none) Pelodictyon luteolum DSM 273, c... 43 0.012
CP000923_490(CP000923|pid:none) Thermoanaerobacter sp. X514, com... 43 0.012
CP000655_1491(CP000655|pid:none) Polynucleobacter necessarius su... 42 0.016
CP000744_1622(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 42 0.016
CP000678_272(CP000678|pid:none) Methanobrevibacter smithii ATCC ... 42 0.021
CP000680_1388(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 42 0.021
CP000099_555(CP000099|pid:none) Methanosarcina barkeri str. Fusa... 42 0.027
AJ627420_3(AJ627420|pid:none) Uncultured crenarchaeote genomic f... 42 0.027
CP000352_1014(CP000352|pid:none) Ralstonia metallidurans CH34, c... 42 0.027
CP000930_2698(CP000930|pid:none) Heliobacterium modesticaldum Ic... 41 0.036
CP000562_1035(CP000562|pid:none) Methanoculleus marisnigri JR1, ... 41 0.036
AP008217_679(AP008217|pid:none) Oryza sativa (japonica cultivar-... 41 0.036
AM746676_4753(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 41 0.036
CP000926_4292(CP000926|pid:none) Pseudomonas putida GB-1, comple... 41 0.036
AM260479_1136(AM260479|pid:none) Ralstonia eutropha H16 chromoso... 41 0.036
CP000721_577(CP000721|pid:none) Clostridium beijerinckii NCIMB 8... 41 0.036
CP000875_2390(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 41 0.046
BX571857_1399(BX571857|pid:none) Staphylococcus aureus strain MS... 41 0.046
(O05956) RecName: Full=Endonuclease III; EC=4.2.99.18; ... 41 0.046
CP000716_423(CP000716|pid:none) Thermosipho melanesiensis BI429,... 40 0.061
AE001437_679(AE001437|pid:none) Clostridium acetobutylicum ATCC ... 40 0.061
AE010299_3910(AE010299|pid:none) Methanosarcina acetivorans str.... 40 0.061
CP001348_3230(CP001348|pid:none) Clostridium cellulolyticum H10,... 40 0.061
CP000016_360(CP000016|pid:none) Candidatus Blochmannia pennsylva... 40 0.061
CP001016_3008(CP001016|pid:none) Beijerinckia indica subsp. indi... 40 0.061
CP001100_2175(CP001100|pid:none) Chloroherpeton thalassium ATCC ... 40 0.061
AY657542_1(AY657542|pid:none) Synthetic construct Peudomonas aer... 40 0.079
CP000967_2044(CP000967|pid:none) Xanthomonas oryzae pv. oryzae P... 40 0.079
CP000559_995(CP000559|pid:none) Methanocorpusculum labreanum Z, ... 40 0.079
AP009178_559(AP009178|pid:none) Nitratiruptor sp. SB155-2 genomi... 40 0.079
CP000962_202(CP000962|pid:none) Clostridium botulinum A3 str. Lo... 40 0.079
CP001102_581(CP001102|pid:none) Candidatus Amoebophilus asiaticu... 40 0.079
CP000514_920(CP000514|pid:none) Marinobacter aquaeolei VT8, comp... 40 0.079
CP000937_1559(CP000937|pid:none) Francisella philomiragia subsp.... 40 0.079
CP001321_627(CP001321|pid:none) Haemophilus parasuis SH0165, com... 40 0.079
CP000487_493(CP000487|pid:none) Campylobacter fetus subsp. fetus... 40 0.10
CP000485_1320(CP000485|pid:none) Bacillus thuringiensis str. Al ... 40 0.10
CR936257_2237(CR936257|pid:none) Natronomonas pharaonis DSM 2160... 40 0.10
BX950229_537(BX950229|pid:none) Methanococcus maripaludis strain... 40 0.10
CP000512_1533(CP000512|pid:none) Acidovorax citrulli AAC00-1, co... 40 0.10
CP001365_946(CP001365|pid:none) Halorubrum lacusprofundi ATCC 49... 39 0.14
BA000002_103(BA000002|pid:none) Aeropyrum pernix K1 DNA, complet... 39 0.14
AE015929_1140(AE015929|pid:none) Staphylococcus epidermidis ATCC... 39 0.14
C72770(C72770)probable DNA-(apurinic or apyrimidinic site)lyase ... 39 0.14
AE017125_1575(AE017125|pid:none) Helicobacter hepaticus ATCC 514... 39 0.14
AC138002_16(AC138002|pid:none) Oryza sativa (japonica cultivar-g... 39 0.14
AE008692_706(AE008692|pid:none) Zymomonas mobilis subsp. mobilis... 39 0.18
CP000087_1306(CP000087|pid:none) Rickettsia bellii RML369-C, com... 39 0.18
CP001050_185(CP001050|pid:none) Neisseria gonorrhoeae NCCP11945,... 39 0.18
CP000849_61(CP000849|pid:none) Rickettsia bellii OSU 85-389, com... 39 0.18
CP000437_745(CP000437|pid:none) Francisella tularensis subsp. ho... 39 0.18
BA000028_1757(BA000028|pid:none) Oceanobacillus iheyensis HTE831... 39 0.18
AM233362_920(AM233362|pid:none) Francisella tularensis subsp. ho... 39 0.18
AE005673_2255(AE005673|pid:none) Caulobacter crescentus CB15, co... 39 0.18
CP000409_926(CP000409|pid:none) Rickettsia canadensis str. McKie... 39 0.18
AE004437_459(AE004437|pid:none) Halobacterium sp. NRC-1, complet... 39 0.18
AE013598_2408(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K... 39 0.18
CP000082_829(CP000082|pid:none) Psychrobacter arcticus 273-4, co... 39 0.18
CP000439_1011(CP000439|pid:none) Francisella tularensis subsp. n... 39 0.23
CP000949_1120(CP000949|pid:none) Pseudomonas putida W619, comple... 39 0.23
AJ749949_648(AJ749949|pid:none) Francisella tularensis subsp. tu... 39 0.23
AE004437_308(AE004437|pid:none) Halobacterium sp. NRC-1, complet... 39 0.23
AC136839_32(AC136839|pid:none) Medicago truncatula clone mth2-13... 39 0.23
AY596297_869(AY596297|pid:none) Haloarcula marismortui ATCC 4304... 39 0.23
B83862(B83862) endonuclease III (DNA repair) nth [imported] - Ba... 39 0.23
CP000927_5030(CP000927|pid:none) Caulobacter sp. K31, complete g... 39 0.23
AP009179_1806(AP009179|pid:none) Sulfurovum sp. NBC37-1 genomic ... 38 0.30
DQ465649_1(DQ465649|pid:none) Neisseria meningitidis strain Z109... 38 0.30
CP000390_3531(CP000390|pid:none) Mesorhizobium sp. BNC1, complet... 38 0.30
AL591688_168(AL591688|pid:none) Sinorhizobium meliloti 1021 comp... 38 0.30
AE017194_1669(AE017194|pid:none) Bacillus cereus ATCC 10987, com... 38 0.30
AL157959_637(AL157959|pid:none) Neisseria meningitidis serogroup... 38 0.30
CP000109_1030(CP000109|pid:none) Thiomicrospira crunogena XCL-2,... 38 0.30
AJ938182_1316(AJ938182|pid:none) Staphylococcus aureus RF122 com... 38 0.30
CP001175_651(CP001175|pid:none) Listeria monocytogenes HCC23, co... 38 0.30
CP001139_920(CP001139|pid:none) Vibrio fischeri MJ11 chromosome ... 38 0.30
CP000361_603(CP000361|pid:none) Arcobacter butzleri RM4018, comp... 38 0.30
A64593(A64593) endonuclease III - Helicobacter pylori (strain 26... 38 0.30
AE008923_1558(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 38 0.39
AE008689_1435(AE008689|pid:none) Agrobacterium tumefaciens str. ... 38 0.39
AE014186_287(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 38 0.39
AP006627_2049(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, c... 38 0.39
BT037722_1(BT037722|pid:none) Zea mays full-length cDNA clone ZM... 38 0.39
FM992689_627(FM992689|pid:none) Candida dubliniensis CD36 chromo... 38 0.39
CP001217_586(CP001217|pid:none) Helicobacter pylori P12, complet... 38 0.39
CP000903_1450(CP000903|pid:none) Bacillus weihenstephanensis KBA... 38 0.39
CP001034_489(CP001034|pid:none) Natranaerobius thermophilus JW/N... 38 0.39
AM039952_1623(AM039952|pid:none) Xanthomonas campestris pv. vesi... 38 0.39
AE016828_1456(AE016828|pid:none) Coxiella burnetii RSA 493, comp... 38 0.39
CP001365_1974(CP001365|pid:none) Halorubrum lacusprofundi ATCC 4... 38 0.39
AE004439_381(AE004439|pid:none) Pasteurella multocida subsp. mul... 37 0.51
AM746676_3919(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 37 0.51
CP001340_3845(CP001340|pid:none) Caulobacter crescentus NA1000, ... 37 0.51
CP000057_1744(CP000057|pid:none) Haemophilus influenzae 86-028NP... 37 0.51
CP000879_1343(CP000879|pid:none) Petrotoga mobilis SJ95, complet... 37 0.51
CP000252_2722(CP000252|pid:none) Syntrophus aciditrophicus SB, c... 37 0.51
CP000628_3021(CP000628|pid:none) Agrobacterium radiobacter K84 c... 37 0.51
CP000300_2009(CP000300|pid:none) Methanococcoides burtonii DSM 6... 37 0.51
CP001185_583(CP001185|pid:none) Thermosipho africanus TCF52B, co... 37 0.51
CP000477_896(CP000477|pid:none) Methanosaeta thermophila PT, com... 37 0.51
AE017333_2258(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 37 0.51
AP008971_719(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA,... 37 0.51
A87712(A87712) endonuclease III [imported] - Caulobacter crescen... 37 0.51
(Q8KA16) RecName: Full=Endonuclease III; EC=4.2.99.18; ... 37 0.51
CP001176_1473(CP001176|pid:none) Bacillus cereus B4264, complete... 37 0.51
CP000127_1116(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 37 0.51
CP000683_815(CP000683|pid:none) Rickettsia massiliae MTU5, compl... 37 0.51
CP000304_1193(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 37 0.51
CP000627_509(CP000627|pid:none) Vibrio cholerae O395 chromosome ... 37 0.67
CP000500_591(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 37 0.67
CP000490_41(CP000490|pid:none) Paracoccus denitrificans PD1222 c... 37 0.67
AE016879_1448(AE016879|pid:none) Bacillus anthracis str. Ames, c... 37 0.67
CP001147_681(CP001147|pid:none) Thermodesulfovibrio yellowstonii... 37 0.67
CP000413_984(CP000413|pid:none) Lactobacillus gasseri ATCC 33323... 37 0.67
AE015924_1515(AE015924|pid:none) Porphyromonas gingivalis W83, c... 37 0.67
CP001324_412(CP001324|pid:none) Micromonas sp. RCC299 chromosome... 37 0.67
CP000388_2946(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 37 0.67
AP009380_1712(AP009380|pid:none) Porphyromonas gingivalis ATCC 3... 37 0.67
A75109(A75109) endonuclease III (nth) PAB0459 - Pyrococcus abyss... 37 0.67
CP000609_1057(CP000609|pid:none) Methanococcus maripaludis C5, c... 37 0.67
CP001186_1435(CP001186|pid:none) Bacillus cereus G9842, complete... 37 0.67
CP000090_1043(CP000090|pid:none) Ralstonia eutropha JMP134 chrom... 37 0.67
FM178379_1866(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ... 37 0.88
AE017198_1039(AE017198|pid:none) Lactobacillus johnsonii NCC 533... 37 0.88
AY596296_103(AY596296|pid:none) Haloarcula marismortui ATCC 4304... 37 0.88
AE008384_895(AE008384|pid:none) Methanosarcina mazei strain Goe1... 37 0.88
CP000099_914(CP000099|pid:none) Methanosarcina barkeri str. Fusa... 37 0.88
CP001279_599(CP001279|pid:none) Nautilia profundicola AmH, compl... 37 0.88
AE000657_209(AE000657|pid:none) Aquifex aeolicus VF5, complete g... 37 0.88
CP000678_1365(CP000678|pid:none) Methanobrevibacter smithii ATCC... 37 0.88
EU016644_38(EU016644|pid:none) Uncultured Group I marine crenarc... 37 0.88
CP000866_52(CP000866|pid:none) Nitrosopumilus maritimus SCM1, co... 36 1.1
AE008922_1508(AE008922|pid:none) Xanthomonas campestris pv. camp... 36 1.1
CP000155_1801(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 36 1.1
AM295250_1079(AM295250|pid:none) Staphylococcus carnosus subsp. ... 36 1.1
CT573213_6400(CT573213|pid:none) Frankia alni str. ACN14A chromo... 36 1.1
AE014074_642(AE014074|pid:none) Streptococcus pyogenes MGAS315, ... 36 1.1
CP000568_1273(CP000568|pid:none) Clostridium thermocellum ATCC 2... 36 1.1
CP000560_1963(CP000560|pid:none) Bacillus amyloliquefaciens FZB4... 36 1.1
CP000867_351(CP000867|pid:none) Methanococcus maripaludis C6, co... 36 1.1
CP000922_1128(CP000922|pid:none) Anoxybacillus flavithermus WK1,... 36 1.1
CP000058_1321(CP000058|pid:none) Pseudomonas syringae pv. phaseo... 36 1.1
CP001389_3412(CP001389|pid:none) Rhizobium sp. NGR234, complete ... 36 1.1
AE009949_790(AE009949|pid:none) Streptococcus pyogenes MGAS8232,... 36 1.1
CP000260_789(CP000260|pid:none) Streptococcus pyogenes MGAS10270... 36 1.1
AM181176_1133(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 36 1.1
CU207211_747(CU207211|pid:none) Herminiimonas arsenicoxydans chr... 36 1.1
CP000829_692(CP000829|pid:none) Streptococcus pyogenes NZ131, co... 36 1.1
AE004092_699(AE004092|pid:none) Streptococcus pyogenes M1 GAS, c... 36 1.1
BA000001_1541(BA000001|pid:none) Pyrococcus horikoshii OT3 DNA, ... 36 1.5
AE017143_956(AE017143|pid:none) Haemophilus ducreyi strain 35000... 36 1.5
AE016853_4050(AE016853|pid:none) Pseudomonas syringae pv. tomato... 36 1.5
CP000232_1850(CP000232|pid:none) Moorella thermoacetica ATCC 390... 36 1.5
CP000513_519(CP000513|pid:none) Dichelobacter nodosus VCS1703A, ... 36 1.5
AM295007_1059(AM295007|pid:none) Streptococcus pyogenes Manfredo... 36 1.5
CP000789_2860(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch... 36 1.5
CP000771_391(CP000771|pid:none) Fervidobacterium nodosum Rt17-B1... 36 1.5
AM260522_1286(AM260522|pid:none) Helicobacter acinonychis str. S... 36 1.5
BA000031_2108(BA000031|pid:none) Vibrio parahaemolyticus RIMD 22... 36 1.5
BX571659_307(BX571659|pid:none) Wolinella succinogenes, complete... 36 1.5
CP000932_871(CP000932|pid:none) Campylobacter lari RM2100, compl... 36 1.5
CP000896_212(CP000896|pid:none) Acholeplasma laidlawii PG-8A, co... 36 1.5
CP000557_2069(CP000557|pid:none) Geobacillus thermodenitrificans... 36 1.5
AP006840_2787(AP006840|pid:none) Symbiobacterium thermophilum IA... 35 2.0
CP000383_3637(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 35 2.0
AP008955_926(AP008955|pid:none) Brevibacillus brevis NBRC 100599... 35 2.0
CR382399_61(CR382399|pid:none) Plasmodium falciparum chromosome ... 35 2.0
AE014133_1496(AE014133|pid:none) Streptococcus mutans UA159, com... 35 2.0
CP001357_1216(CP001357|pid:none) Brachyspira hyodysenteriae WA1,... 35 2.0
AE017262_1903(AE017262|pid:none) Listeria monocytogenes str. 4b ... 35 2.0
CP000767_761(CP000767|pid:none) Campylobacter curvus 525.92, com... 35 2.0
AM743169_1471(AM743169|pid:none) Stenotrophomonas maltophilia K2... 35 2.0
FM204884_732(FM204884|pid:none) Streptococcus equi subsp. zooepi... 35 2.0
CP000738_3336(CP000738|pid:none) Sinorhizobium medicae WSM419, c... 35 2.0
CP000089_1152(CP000089|pid:none) Dechloromonas aromatica RCB, co... 35 2.0
CT573326_1112(CT573326|pid:none) Pseudomonas entomophila str. L4... 35 2.0
FM204883_1350(FM204883|pid:none) Streptococcus equi subsp. equi ... 35 2.0
AF1311(AF1311) probable endonuclease III (DNA repair) [imported]... 35 2.0
CP001349_4570(CP001349|pid:none) Methylobacterium nodulans ORS 2... 35 2.0
AF1683(AF1683) probable endonuclease III (DNA repair) [imported]... 35 2.0
CP000743_619(CP000743|pid:none) Methanococcus aeolicus Nankai-3,... 35 2.5
AM114193_1707(AM114193|pid:none) Uncultured methanogenic archaeo... 35 2.5
CP000813_1936(CP000813|pid:none) Bacillus pumilus SAFR-032, comp... 35 2.5
AM180088_564(AM180088|pid:none) Haloquadratum walsbyi DSM 16790 ... 35 2.5
CU468135_1780(CU468135|pid:none) Erwinia tasmaniensis strain ET1... 35 2.5
EU408357_4(EU408357|pid:none) Uncultured bacterium BLR10 genomic... 35 2.5
(P39788) RecName: Full=Probable endonuclease III; EC=4.... 35 2.5
CP000024_1146(CP000024|pid:none) Streptococcus thermophilus CNRZ... 35 2.5
CP000916_296(CP000916|pid:none) Thermotoga neapolitana DSM 4359,... 35 3.3
CP000613_2705(CP000613|pid:none) Rhodospirillum centenum SW, com... 35 3.3
Y09687_1(Y09687|pid:none) H.sapiens NTH1 mRNA for endonuclease I... 35 3.3
CP001025_2222(CP001025|pid:none) Burkholderia ambifaria MC40-6 c... 35 3.3
CP001230_598(CP001230|pid:none) Persephonella marina EX-H1, comp... 35 3.3
CU695242_117(CU695242|pid:none) Ralstonia solanacearum strain Mo... 35 3.3
AE017347_379(AE017347|pid:none) Cryptococcus neoformans var. neo... 35 3.3
CP000102_477(CP000102|pid:none) Methanosphaera stadtmanae DSM 30... 35 3.3
CP000644_2306(CP000644|pid:none) Aeromonas salmonicida subsp. sa... 35 3.3
AE010299_4494(AE010299|pid:none) Methanosarcina acetivorans str.... 35 3.3
U79718_1(U79718|pid:none) Human endonuclease III homolog 1 (OCTS... 35 3.3
CP001074_3894(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 35 3.3
BA000045_1821(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ... 34 4.3
CP000270_1134(CP000270|pid:none) Burkholderia xenovorans LB400 c... 34 4.3
AE015451_283(AE015451|pid:none) Pseudomonas putida KT2440 comple... 34 4.3
CP000412_794(CP000412|pid:none) Lactobacillus delbrueckii subsp.... 34 4.3
AE009442_1458(AE009442|pid:none) Xylella fastidiosa Temecula1, c... 34 4.3
CP000746_1711(CP000746|pid:none) Actinobacillus succinogenes 130... 34 4.3
CR378671_152(CR378671|pid:none) Photobacterium profundum SS9; se... 34 4.3
BX950851_2261(BX950851|pid:none) Erwinia carotovora subsp. atros... 34 4.3
CP000749_1524(CP000749|pid:none) Marinomonas sp. MWYL1, complete... 34 4.3
CP000450_623(CP000450|pid:none) Nitrosomonas eutropha C91, compl... 34 4.3
CP000382_503(CP000382|pid:none) Clostridium novyi NT, complete g... 34 4.3
AL646052_1006(AL646052|pid:none) Ralstonia solanacearum GMI1000 ... 34 4.3
CP001011_1560(CP001011|pid:none) Xylella fastidiosa M23, complet... 34 4.3
AM180088_1544(AM180088|pid:none) Haloquadratum walsbyi DSM 16790... 34 4.3
CP000084_362(CP000084|pid:none) Candidatus Pelagibacter ubique H... 34 4.3
CP000316_2696(CP000316|pid:none) Polaromonas sp. JS666, complete... 34 5.7
CP000774_3543(CP000774|pid:none) Parvibaculum lavamentivorans DS... 34 5.7
AM180355_584(AM180355|pid:none) Clostridium difficile 630 comple... 34 5.7
CP000284_848(CP000284|pid:none) Methylobacillus flagellatus KT, ... 34 5.7
(O35980) RecName: Full=Endonuclease III-like protein 1; ... 34 5.7
AM902716_1733(AM902716|pid:none) Bordetella petrii strain DSM 12... 34 5.7
CP000246_1493(CP000246|pid:none) Clostridium perfringens ATCC 13... 34 5.7
BA000037_1186(BA000037|pid:none) Vibrio vulnificus YJ016 DNA, ch... 34 5.7
EU686620_19(EU686620|pid:none) Uncultured marine crenarchaeote A... 34 5.7
CP000943_4010(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 34 5.7
CR382136_446(CR382136|pid:none) Debaryomyces hansenii strain CBS... 34 5.7
AE001273_714(AE001273|pid:none) Chlamydia trachomatis D/UW-3/CX,... 34 5.7
BX571965_1113(BX571965|pid:none) Burkholderia pseudomallei strai... 34 5.7
CP000814_555(CP000814|pid:none) Campylobacter jejuni subsp. jeju... 34 5.7
FM954972_881(FM954972|pid:none) Vibrio splendidus LGP32 chromoso... 34 5.7
AE017261_898(AE017261|pid:none) Picrophilus torridus DSM 9790, c... 33 7.4
CP000394_2428(CP000394|pid:none) Granulibacter bethesdensis CGDN... 33 7.4
CP000108_410(CP000108|pid:none) Chlorobium chlorochromatii CaD3,... 33 7.4
AP006878_1142(AP006878|pid:none) Thermococcus kodakarensis KOD1 ... 33 7.4
CR954253_962(CR954253|pid:none) Lactobacillus delbrueckii subsp.... 33 7.4
CP001213_645(CP001213|pid:none) Bifidobacterium animalis subsp. ... 33 7.4
AE017282_2752(AE017282|pid:none) Methylococcus capsulatus str. B... 33 7.4
(Q46IA2) RecName: Full=Spermidine synthase; EC=2.5.1.16... 33 7.4
(P19623) RecName: Full=Spermidine synthase; Short=SPDSY... 33 7.4
AE003849_644(AE003849|pid:none) Xylella fastidiosa 9a5c, complet... 33 7.4
CP000462_2567(CP000462|pid:none) Aeromonas hydrophila subsp. hyd... 33 7.4
AM406671_1470(AM406671|pid:none) Lactococcus lactis subsp. cremo... 33 7.4
CP001277_1428(CP001277|pid:none) Candidatus Hamiltonella defensa... 33 7.4
CP001339_2603(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, ... 33 7.4
CP000133_3622(CP000133|pid:none) Rhizobium etli CFN 42, complete... 33 7.4
(Q1RK34) RecName: Full=Lipoprotein-releasing system ATP-binding ... 33 9.7
CP001612_874(CP001612|pid:none) Rickettsia africae ESF-5, comple... 33 9.7
CP000848_1121(CP000848|pid:none) Rickettsia rickettsii str. 'She... 33 9.7
CP000568_777(CP000568|pid:none) Clostridium thermocellum ATCC 27... 33 9.7
CP000606_2065(CP000606|pid:none) Shewanella loihica PV-4, comple... 33 9.7
CR626927_3020(CR626927|pid:none) Bacteroides fragilis NCTC 9343,... 33 9.7
AB358957_2(AB358957|pid:none) Gallus gallus Tsc2, chNthl1, Slc9a... 33 9.7
AE017354_2819(AE017354|pid:none) Legionella pneumophila subsp. p... 33 9.7
AB284187_1(AB284187|pid:none) Gallus gallus chNthl1 mRNA for Esc... 33 9.7
AP006841_3263(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,... 33 9.7
CP000885_142(CP000885|pid:none) Clostridium phytofermentans ISDg... 33 9.7
CP001052_1197(CP001052|pid:none) Burkholderia phytofirmans PsJN ... 33 9.7
(A2C5F4) RecName: Full=Spermidine synthase; EC=2.5.1.16... 33 9.7

>BC097662_1(BC097662|pid:none) Xenopus laevis hypothetical protein
LOC733253, mRNA (cDNA clone IMAGE:6631801), partial cds.
Length = 414

Score = 132 bits (332), Expect = 1e-29
Identities = 60/133 (45%), Positives = 92/133 (69%), Gaps = 1/133 (0%)
Frame = +3

Query: 150 TVEELNDLGFGYRSKYIVESCKQVIEKGGEQWLNQLKLKPHLEVQKELTTLMGVGKKVAD 329
T +L DLGFGYR+K++ ES + ++ K G WL L+L P+ E + L +L GVG KVAD
Sbjct: 257 TEAKLRDLGFGYRAKFVSESARTILSKHGPDWLESLRLVPYEEAKTALCSLPGVGAKVAD 316

Query: 330 CVSLMSMDNPNAVAIDTHIYQISKK-YLPSLANSSSSLTPKLYQDISNLWESIFGDHAGW 506
CV LM++D AV +DTH+ QI+K+ Y+P L + SLT ++Y++ + + +++G +AGW
Sbjct: 317 CVCLMALDKSEAVPVDTHVLQIAKRDYVPQLGGCNKSLTDRVYRETGDFFRNLWGPYAGW 376

Query: 507 AQTILFANELSVF 545
AQ++LF +EL F
Sbjct: 377 AQSVLFCSELKKF 389

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 819,720,272
Number of extensions: 14289057
Number of successful extensions: 37193
Number of sequences better than 10.0: 345
Number of HSP's gapped: 37003
Number of HSP's successfully gapped: 347
Length of query: 253
Length of database: 1,040,966,779
Length adjustment: 126
Effective length of query: 127
Effective length of database: 637,226,869
Effective search space: 80927812363
Effective search space used: 80927812363
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.75 gvh: 0.24 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.06 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
44.0 %: nuclear
4.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for Contig-U08947-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0