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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U08935-1
Contig ID Contig-U08935-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U08935-1 (Contig-U08935-1Q) /CSM_Contig/Contig-U08935-1Q.Seq.d
ATTTTCTATTAAACTAATACATCAAATAAAAATAAAAATAAAAATAAAAT
AAAATAAAATAAAAAATGAAACCTTCAGATGTTTCTATAATGAAACCTGA
ATTAAAAATGAAATTAAATAATAAATCAATTAAATATTATTTGAAATTTA
TTATTAAAGGTGATAGAAATACAGGCAAAACATCATTATTTAATAGACTT
CAAGGATTACCATTTAAAGAATTATATACACCAACACCAAAAATACAAAT
ATCACATATTAATTGGGATTATAAAAACACAGATGATATTGTAGATGTTG
AAATTTGGGATATAGTAGATGTTGCAAACACTAATAGTAGTAGTAGTAAT
AAAACATCAACCACATTAAAAACATCAAATAAATCACAACAAAGATCAAA
TAATAATAATAATGAAGATATATTCGATCCAAAATTATTAACAGATATGA
ATAAATTTAAAGGTAAAGGTAGTTTTAAAATTGGTGGATTAGATTCAAAA
ACCATTAATGTATATAAAAATGTTAATGCTGTAATATTTATGATGGATCC
ATCAAAGCGATGGACATTCAAATATATTGAAAAGGAGTTTAATAAAGTAC
CAATTGATA----------CANCNAATTCAGCANCCACATCNCCATNNCC
ACAACCAATNCCATTACCACAACCAATACCATCACAACTAACTCCAACAC
CTGCACAAGTATCACCAACACCAAAACCAAATTCATCATCACCACCACAA
CAACCACAACCAAGTACTTCTTCATCAGGTTCTTTCTTTTCAAGATTATT
TTCAAAATCTGAACCAAATTTGTCAACTTCACAACAAATACAACAGCAAC
AACAACAACAACAACAACAAGAACAACAACAGCAGCAGCAAAAACAAATA
CAACAAAATAAATCAGTAGTTGCAGCAATGCCAAAAGTATTATCAAGTGT
TGATGAATTTGTTGCAGGTGGATATGATGATGATGATTTCTATGGTGAAA
AAACTTCAAAAACTACTTTCTTAAAGAATATTATTACTGGTGGAAATAAA
CAACAACAACAATTTAATGATAAATTTGGAAGTGATGATGACGATGATGA
TGGTGATAATAATCCTTGGGTTTCAAAAGAAGAAGANATTTCTATTCAGC
TAAAACTCCAACAAA
Gap gap included
Contig length 1155
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 4330245
End point 4329087
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U08935
List of clone(s) 

est1=CFF781F,1,610
est2=CFF781Z,611,1157
Translated Amino Acid sequence 
flln*yik*k*k*k*nkik*KMKPSDVSIMKPELKMKLNNKSIKYYLKFIIKGDRNTGKT
SLFNRLQGLPFKELYTPTPKIQISHINWDYKNTDDIVDVEIWDIVDVANTNSSSSNKTST
TLKTSNKSQQRSNNNNNEDIFDPKLLTDMNKFKGKGSFKIGGLDSKTINVYKNVNAVIFM
MDPSKRWTFKYIEKEFNKVPID---

---XNSAXTSPXPQPXPLPQPIPSQLTPTPAQVSPTPKPNSSSPPQQPQPSTSSSGSFFS
RLFSKSEPNLSTSQQIQQQQQQQQQQEQQQQQQKQIQQNKSVVAAMPKVLSSVDEFVAGG
YDDDDFYGEKTSKTTFLKNIITGGNKQQQQFNDKFGSDDDDDDGDNNPWVSKEEXISIQL
KLQQ
Translated Amino Acid sequence (All Frames) 
Frame A:
ify*tntsnknknknkik*nkk*nlqmfl**nln*k*n*iinqlnii*nlllkvieiqak
hhylidfkdyhlknyihqhqkykyhiligiiktqmil*mlkfgi**mlqtlivvvvikhq
ph*khqinhnkdqiiiimkiysiqny*qi*inlkvkvvlklvd*iqkplmyikmlml*yl
*wihqsdghsnilkrslikyqli---

---xxiqxphxhxhnqxhyhnqyhhn*lqhlhkyhqhqnqihhhhhnnhnqvllhqvlsf
qdyfqnlnqicqlhnkynsnnnnnnnknnnsssknkynkinq*lqqcqkyyqvlmnllqv
dmmmmismvkklqklls*rilllveinnnnnlminlevmmtmmmviiilgfqkkkxflfs
*nsnk

Frame B:
fsiklihqikikikik*nkiknetfrcfynet*ikneik**in*ilfeiyy*r**kyrqn
iii**tsriti*riiytntkntnity*lgl*khr*ycrc*nlgysrcckh*******nin
hiknik*ittkik*****ryirskiinrye*i*r*r*f*nwwirfknh*ci*kc*ccniy
dgsikamdiqiy*kgv**stn*---

---xxfsxhixxxttnxitttntittnsntctsitntktkfiitttttttkyffirfflf
kiifki*tkfvnfttnttatttttttrtttaaaktnttk*isscsnaksiikc**iccrw
i****flw*knfknyflkeyyywwk*tttti***iwk***r**w***slgfkrrrxfysa
ktpt

Frame C:
flln*yik*k*k*k*nkik*KMKPSDVSIMKPELKMKLNNKSIKYYLKFIIKGDRNTGKT
SLFNRLQGLPFKELYTPTPKIQISHINWDYKNTDDIVDVEIWDIVDVANTNSSSSNKTST
TLKTSNKSQQRSNNNNNEDIFDPKLLTDMNKFKGKGSFKIGGLDSKTINVYKNVNAVIFM
MDPSKRWTFKYIEKEFNKVPID---

---XNSAXTSPXPQPXPLPQPIPSQLTPTPAQVSPTPKPNSSSPPQQPQPSTSSSGSFFS
RLFSKSEPNLSTSQQIQQQQQQQQQQEQQQQQQKQIQQNKSVVAAMPKVLSSVDEFVAGG
YDDDDFYGEKTSKTTFLKNIITGGNKQQQQFNDKFGSDDDDDDGDNNPWVSKEEXISIQL
KLQQ
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U08935-1 (Contig-U08935-1Q)
/CSM_Contig/Contig-U08935-1Q.Seq.d
         (1165 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U08935-1 (Contig-U08935-1Q) /CSM_Contig/Conti...   981  0.0
Contig-U14787-1 (Contig-U14787-1Q) /CSM_Contig/Conti...    52  1e-06
Contig-U11864-1 (Contig-U11864-1Q) /CSM_Contig/Conti...    52  1e-06
Contig-U11827-1 (Contig-U11827-1Q) /CSM_Contig/Conti...    46  9e-05
Contig-U11680-1 (Contig-U11680-1Q) /CSM_Contig/Conti...    46  9e-05
Contig-U05363-1 (Contig-U05363-1Q) /CSM_Contig/Conti...    46  9e-05
Contig-U02425-1 (Contig-U02425-1Q) /CSM_Contig/Conti...    46  9e-05
Contig-U11849-1 (Contig-U11849-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U11662-1 (Contig-U11662-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U11433-1 (Contig-U11433-1Q) /CSM_Contig/Conti...    44  3e-04

>Contig-U08935-1 (Contig-U08935-1Q) /CSM_Contig/Contig-U08935-1Q.Seq.d
          Length = 1165

 Score =  981 bits (495), Expect = 0.0
 Identities = 546/546 (100%)
 Strand = Plus / Plus

                                                                       
Query: 159 ggtgatagaaatacaggcaaaacatcattatttaatagacttcaaggattaccatttaaa 218
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ggtgatagaaatacaggcaaaacatcattatttaatagacttcaaggattaccatttaaa 218

                                                                       
Query: 219 gaattatatacaccaacaccaaaaatacaaatatcacatattaattgggattataaaaac 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gaattatatacaccaacaccaaaaatacaaatatcacatattaattgggattataaaaac 278

                                                                       
Query: 279 acagatgatattgtagatgttgaaatttgggatatagtagatgttgcaaacactaatagt 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 acagatgatattgtagatgttgaaatttgggatatagtagatgttgcaaacactaatagt 338

                                                                       
Query: 339 agtagtagtaataaaacatcaaccacattaaaaacatcaaataaatcacaacaaagatca 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 agtagtagtaataaaacatcaaccacattaaaaacatcaaataaatcacaacaaagatca 398

                                                                       
Query: 399 aataataataataatgaagatatattcgatccaaaattattaacagatatgaataaattt 458
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aataataataataatgaagatatattcgatccaaaattattaacagatatgaataaattt 458

                                                                       
Query: 459 aaaggtaaaggtagttttaaaattggtggattagattcaaaaaccattaatgtatataaa 518
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aaaggtaaaggtagttttaaaattggtggattagattcaaaaaccattaatgtatataaa 518

                                                                       
Query: 519 aatgttaatgctgtaatatttatgatggatccatcaaagcgatggacattcaaatatatt 578
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 aatgttaatgctgtaatatttatgatggatccatcaaagcgatggacattcaaatatatt 578

                                                                       
Query: 579 gaaaaggagtttaataaagtaccaattgatannnnnnnnnncancnaattcagcanccac 638
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gaaaaggagtttaataaagtaccaattgatannnnnnnnnncancnaattcagcanccac 638

                                                                       
Query: 639 atcnccatnnccacaaccaatnccattaccacaaccaataccatcacaactaactccaac 698
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 atcnccatnnccacaaccaatnccattaccacaaccaataccatcacaactaactccaac 698

                 
Query: 699 acctgc 704
           ||||||
Sbjct: 699 acctgc 704


 Score =  504 bits (254), Expect = e-142
 Identities = 257/257 (100%)
 Strand = Plus / Plus

                                                                        
Query: 909  taaatcagtagttgcagcaatgccaaaagtattatcaagtgttgatgaatttgttgcagg 968
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909  taaatcagtagttgcagcaatgccaaaagtattatcaagtgttgatgaatttgttgcagg 968

                                                                        
Query: 969  tggatatgatgatgatgatttctatggtgaaaaaacttcaaaaactactttcttaaagaa 1028
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969  tggatatgatgatgatgatttctatggtgaaaaaacttcaaaaactactttcttaaagaa 1028

                                                                        
Query: 1029 tattattactggtggaaataaacaacaacaacaatttaatgataaatttggaagtgatga 1088
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 tattattactggtggaaataaacaacaacaacaatttaatgataaatttggaagtgatga 1088

                                                                        
Query: 1089 tgacgatgatgatggtgataataatccttgggtttcaaaagaagaaganatttctattca 1148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1089 tgacgatgatgatggtgataataatccttgggtttcaaaagaagaaganatttctattca 1148

                             
Query: 1149 gctaaaactccaacaaa 1165
            |||||||||||||||||
Sbjct: 1149 gctaaaactccaacaaa 1165


 Score =  133 bits (67), Expect = 5e-31
 Identities = 67/67 (100%)
 Strand = Plus / Plus

                                                                       
Query: 764 gtacttcttcatcaggttctttcttttcaagattattttcaaaatctgaaccaaatttgt 823
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 gtacttcttcatcaggttctttcttttcaagattattttcaaaatctgaaccaaatttgt 823

                  
Query: 824 caacttc 830
           |||||||
Sbjct: 824 caacttc 830


 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 67 tgaaaccttcagatgtttctataatgaaacc 97
          |||||||||||||||||||||||||||||||
Sbjct: 67 tgaaaccttcagatgtttctataatgaaacc 97


 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  attttctattaaactaatacatc 23
          |||||||||||||||||||||||
Sbjct: 1  attttctattaaactaatacatc 23


>Contig-U14787-1 (Contig-U14787-1Q) /CSM_Contig/Contig-U14787-1Q.Seq.d
          Length = 614

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 395 atcaaataataataataatgaagata 420
           ||||||||||||||||||||||||||
Sbjct: 366 atcaaataataataataatgaagata 391


>Contig-U11864-1 (Contig-U11864-1Q) /CSM_Contig/Contig-U11864-1Q.Seq.d
          Length = 1613

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 1083 tgatgatgacgatgatgatggtgata 1108
            ||||||||||||||||||||||||||
Sbjct: 897  tgatgatgacgatgatgatggtgata 872


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 44,377
Number of Sequences: 6905
Number of extensions: 44377
Number of successful extensions: 18317
Number of sequences better than 10.0: 2122
length of query: 1165
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1149
effective length of database: 5,564,391
effective search space: 6393485259
effective search space used: 6393485259
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.13
Homology vs DNA 
Query= Contig-U08935-1 (Contig-U08935-1Q) /CSM_Contig/Contig-U08935-1Q.Seq.d
         (1165 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ359084) Dictyostelium discoideum cDNA clone:ddc12b21, 5' ...   389   0.0    3
(BJ372467) Dictyostelium discoideum cDNA clone:ddc12b21, 3' ...   504   0.0    3
(AC121435) Rattus norvegicus clone CH230-210I5, *** SEQUENCI...    54   1e-05  2
(AC109711) Rattus norvegicus clone CH230-29O9, *** SEQUENCIN...    54   1e-05  2
(AC119054) Rattus norvegicus strain Brown Norway clone RP31-...    54   1e-05  2
(AC208492) Populus trichocarpa clone JGIACSB265-D10, complet...    42   6e-04  2
(AC145041) Macropus eugenii clone ME_KBa-210M21, complete se...    58   8e-04  1
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s...    58   8e-04  1
(AZ196050) SP_1031_A2_E05_SP6E Strongylocentrotus purpuratus...    52   0.001  2
(AL407168) T7 end of clone XAU0AA001F10 of library XAU0AA fr...    40   0.001  3
(G73572) OMM1339 Rainbow Trout Blood Oncorhynchus mykiss STS...    52   0.002  2
(CR855265) Zebrafish DNA sequence from clone CH211-195E6 in ...    46   0.002  2
(AC136064) Rattus norvegicus clone CH230-415F6, *** SEQUENCI...    50   0.002  2
(DX956877) CHORI105-4C10.TV CHORI105.pTARBAC1.3 Trypanosoma ...    52   0.002  2
(AW061367) ME000327.FER Egg stage cDNA expression library in...    50   0.003  2
(EB241584) PEG003-C-218219-501 Normalized Pedal-Pleural Gang...    42   0.003  2
(AC179756) Strongylocentrotus purpuratus clone R3-1018A10, W...    50   0.003  2
(EB213840) PEG002-C-007902-501 Normalized Pedal-Pleural Gang...    42   0.003  2
(BX323087) Zebrafish DNA sequence from clone CH211-212J22 in...    50   0.003  5
(AC116100) Dictyostelium discoideum chromosome 2 map 6163571...    56   0.003  1
(AC116611) Homo sapiens BAC clone RP13-581D7 from 4, complet...    56   0.003  1
(AC117925) Rattus norvegicus clone CH230-212D2, WORKING DRAF...    56   0.003  1
(AC110623) Rattus norvegicus clone CH230-157E11, WORKING DRA...    56   0.003  1
(AC178868) Strongylocentrotus purpuratus clone R3-27A9, WORK...    56   0.003  1
(AC177098) Strongylocentrotus purpuratus clone R3-1037N15, W...    56   0.003  1
(AL744114) Danio rerio genomic clone DKEY-5N2, genomic surve...    56   0.003  1
(EY319622) CAWX6980.rev CAWX Helobdella robusta Primary Earl...    52   0.003  2
(AZ206392) SP_0108_A1_B04_T7A Strongylocentrotus purpuratus,...    52   0.003  2
(EY327336) CAWY12554.rev CAWY Helobdella robusta Subtracted ...    50   0.003  2
(EY306053) CAWX19710.rev CAWX Helobdella robusta Primary Ear...    44   0.004  2
(EY323590) CAWX9087.rev CAWX Helobdella robusta Primary Earl...    44   0.004  2
(EY305944) CAWX19650.fwd CAWX Helobdella robusta Primary Ear...    50   0.004  2
(DQ889027) Paralichthys olivaceus microsatellite Poli1463TUF...    50   0.004  2
(AC176786) Strongylocentrotus purpuratus clone R3-3106G24, W...    48   0.004  3
(EY319623) CAWX6980.fwd CAWX Helobdella robusta Primary Earl...    52   0.004  2
(AC180865) Strongylocentrotus purpuratus clone R3-3067F16, W...    48   0.004  3
(FM172656) Oryzias latipes EST, clone M074--C11_091.               50   0.004  2
(DH114075) Oryzias latipes Fosmid clone:GOLWFno374_i07, forw...    50   0.004  2
(FC251791) CAGH7082.fwd CAGH Nematostella vectensis Nemve La...    50   0.005  2
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    40   0.006  13
(AC132795) Rattus norvegicus clone CH230-23H18, *** SEQUENCI...    44   0.008  2
(AC149953) Strongylocentrotus purpuratus clone R3-32B17, WOR...    36   0.008  2
(AC178756) Strongylocentrotus purpuratus clone R3-16O19, WOR...    36   0.008  2
(AC176040) Strongylocentrotus purpuratus clone R3-18J23, WOR...    36   0.008  2
(BM522088) ESSU0625 S.scabiei cDNA library Sarcoptes scabiei...    50   0.008  2
(AC121963) Mus musculus BAC clone RP24-257C17 from chromosom...    54   0.009  2
(BJ424885) Dictyostelium discoideum cDNA clone:ddv53m19, 5' ...    44   0.009  3
(BJ419698) Dictyostelium discoideum cDNA clone:ddv36l23, 5' ...    36   0.009  4
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    32   0.010  12
(FM170376) Oryzias latipes EST, clone M066--H8_050.                50   0.010  2
(AC180286) Strongylocentrotus purpuratus clone R3-3121K19, W...    52   0.010  5
(AZ233511) RPCI-23-85C2.TJ RPCI-23 Mus musculus genomic clon...    50   0.010  2
(EY321896) CAWX8154.fwd CAWX Helobdella robusta Primary Earl...    42   0.010  2
(BX563618) Glossina morsitans morsitans (Tseatse fly) EST fr...    52   0.011  2
(BX784026) Zebrafish DNA sequence from clone CH211-66P13 in ...    54   0.012  1
(BX323574) Zebrafish DNA sequence from clone DKEY-180F8.           54   0.012  1
(BX284700) Zebrafish DNA sequence from clone CH211-269O12 in...    54   0.012  1
(AC119825) Mus musculus chromosome 3, clone RP23-358O22, com...    54   0.012  1
(AC107711) Mus musculus chromosome 14, clone RP23-291I12, co...    54   0.012  1
(AC096623) Mus musculus strain 129/SvJ chromosome 3 clone mg...    54   0.012  1
(AC096622) Mus musculus strain 129/SvJ clone mgs1-182e11, co...    54   0.012  1
(AP008218) Oryza sativa (japonica cultivar-group) genomic DN...    54   0.012  1
(AL713928) Oryza sativa chromosome 12, . BAC OSJNBa0036B12 o...    54   0.012  1
(AC171134) Helobdella robusta clone CH306-1A5, complete sequ...    54   0.012  1
(AC157973) Strongylocentrotus purpuratus clone R3-4002B23, W...    54   0.012  1
(AC134022) Rattus norvegicus clone CH230-87O18, *** SEQUENCI...    54   0.012  1
(AC131821) Rattus norvegicus clone CH230-248C12, *** SEQUENC...    54   0.012  1
(AC131352) Rattus norvegicus clone CH230-71L19, WORKING DRAF...    54   0.012  1
(AC109680) Rattus norvegicus clone CH230-87P18, *** SEQUENCI...    54   0.012  1
(AC106196) Rattus norvegicus clone CH230-228G4, *** SEQUENCI...    54   0.012  1
(AC094326) Rattus norvegicus clone CH230-3I22, *** SEQUENCIN...    54   0.012  1
(AC184568) Strongylocentrotus purpuratus clone R3-3106J12, W...    54   0.012  1
(AC184294) Strongylocentrotus purpuratus clone R3-18E9, WORK...    54   0.012  1
(AC179799) Strongylocentrotus purpuratus clone R3-1014G9, WO...    54   0.012  1
(AC178870) Strongylocentrotus purpuratus clone R3-27B10, WOR...    54   0.012  1
(AC177395) Strongylocentrotus purpuratus clone R3-53G21, WOR...    54   0.012  1
(AC168502) Strongylocentrotus purpuratus clone R3-3117D16, W...    54   0.012  1
(AC168415) Strongylocentrotus purpuratus clone R3-4002B23, W...    54   0.012  1
(AL217896) Tetraodon nigroviridis genome survey sequence T7 ...    54   0.012  1
(CR200838) Reverse strand read from insert in 5'HPRT inserti...    54   0.012  1
(CR107574) Reverse strand read from insert in 5'HPRT inserti...    54   0.012  1
(AC179621) Strongylocentrotus purpuratus clone R3-1028F15, W...    48   0.014  6
(CL737874) OR_BBa0072E03.f OR_BBa Oryza nivara genomic clone...    50   0.014  2
(EY344199) CAWZ12946.fwd CAWZ Helobdella robusta Primary Lat...    50   0.014  2
(CL621810) OR_BBa0016H03.f OR_BBa Oryza nivara genomic clone...    50   0.015  2
(AQ927668) RPCI-23-260C10.TV RPCI-23 Mus musculus genomic cl...    36   0.015  3
(EY328874) CAWY1909.fwd CAWY Helobdella robusta Subtracted E...    48   0.015  2
(DW131107) CLSX7746.b1_C17.ab1 CLS(XYZ) lettuce sativa Lactu...    46   0.015  2
(EY354964) CAWZ3546.fwd CAWZ Helobdella robusta Primary Late...    50   0.016  2
(EY337910) CAWY8652.fwd CAWY Helobdella robusta Subtracted E...    48   0.016  2
(DY968326) CLSM19403.b1_E04.ab1 CLS(LMS) lettuce sativa Lact...    46   0.017  2
(BX322231) Zebrafish DNA sequence from clone CH211-145C1 in ...    46   0.017  6
(CT956028) Zebrafish DNA sequence from clone CH211-86G1 in l...    50   0.017  3
(CR788322) Zebrafish DNA sequence from clone CH211-194C3 in ...    48   0.018  5
(U64657) Parachartergus colobopterus microsatellite Paco3305...    48   0.018  2
(AL844506) Plasmodium falciparum chromosome  7.                    40   0.018  14
(EE608488) CHWL388.b1_G01.ab1 CHW(LMS) silverleaf sunflower ...    50   0.018  2
(AC180653) Strongylocentrotus purpuratus clone R3-3090F21, W...    42   0.018  5
(AY967351) Synthetic construct isolate FTT0635 unknown prote...    36   0.019  3
(AC178967) Strongylocentrotus purpuratus clone R3-3121P14, W...    46   0.020  4

>(BJ359084) Dictyostelium discoideum cDNA clone:ddc12b21, 5' end,
           single read.
          Length = 610

 Score =  389 bits (196), Expect(3) = 0.0
 Identities = 196/196 (100%)
 Strand = Plus / Plus


Query: 414 gaagatatattcgatccaaaattattaacagatatgaataaatttaaaggtaaaggtagt 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gaagatatattcgatccaaaattattaacagatatgaataaatttaaaggtaaaggtagt 473


Query: 474 tttaaaattggtggattagattcaaaaaccattaatgtatataaaaatgttaatgctgta 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tttaaaattggtggattagattcaaaaaccattaatgtatataaaaatgttaatgctgta 533


Query: 534 atatttatgatggatccatcaaagcgatggacattcaaatatattgaaaaggagtttaat 593
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 atatttatgatggatccatcaaagcgatggacattcaaatatattgaaaaggagtttaat 593


Query: 594 aaagtaccaattgata 609
           ||||||||||||||||
Sbjct: 594 aaagtaccaattgata 609

 Score =  373 bits (188), Expect(3) = 0.0
 Identities = 188/188 (100%)
 Strand = Plus / Plus


Query: 159 ggtgatagaaatacaggcaaaacatcattatttaatagacttcaaggattaccatttaaa 218
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ggtgatagaaatacaggcaaaacatcattatttaatagacttcaaggattaccatttaaa 218


Query: 219 gaattatatacaccaacaccaaaaatacaaatatcacatattaattgggattataaaaac 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gaattatatacaccaacaccaaaaatacaaatatcacatattaattgggattataaaaac 278


Query: 279 acagatgatattgtagatgttgaaatttgggatatagtagatgttgcaaacactaatagt 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 acagatgatattgtagatgttgaaatttgggatatagtagatgttgcaaacactaatagt 338


Query: 339 agtagtag 346
           ||||||||
Sbjct: 339 agtagtag 346

 Score = 46.1 bits (23), Expect(3) = 0.0
 Identities = 23/23 (100%)
 Strand = Plus / Plus


Query: 1  attttctattaaactaatacatc 23
          |||||||||||||||||||||||
Sbjct: 1  attttctattaaactaatacatc 23

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,067,369,817
Number of extensions: 78388023
Number of successful extensions: 9135083
Number of sequences better than 10.0: 4139
Length of query: 1165
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1141
Effective length of database: 97,308,875,965
Effective search space: 111029427476065
Effective search space used: 111029427476065
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.24
Homology vs Protein 
Query= Contig-U08935-1 (Contig-U08935-1Q) /CSM_Contig/Contig-U08935-1Q.Seq.d
         (1165 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9H935) RecName: Full=Putative GTP-binding protein Parf; AltNam...    72   3e-11
DQ141240_1(DQ141240|pid:none) Homo sapiens PARF mRNA, complete c...    72   3e-11
AL355987_12(AL355987|pid:none) Human DNA sequence from clone RP1...    72   3e-11
BC155697_1(BC155697|pid:none) Xenopus tropicalis hypothetical pr...    70   2e-10
(Q5U3K5) RecName: Full=Putative GTP-binding protein Parf;  &AL73...    70   2e-10
BC058585_1(BC058585|pid:none) Mus musculus RIKEN cDNA B230208H17...    70   2e-10
AK171643_1(AK171643|pid:none) Mus musculus activated spleen cDNA...    70   2e-10
CU041374_9(CU041374|pid:none) Zebrafish DNA sequence from clone ...    70   2e-10
BC002945_1(BC002945|pid:none) Homo sapiens chromosome 9 open rea...    67   2e-09
AK094382_1(AK094382|pid:none) Homo sapiens cDNA FLJ37063 fis, cl...    66   2e-09
FN357480_2(FN357480|pid:none) Schistosoma mansoni genome sequenc...    60   2e-07
AY915176_1(AY915176|pid:none) Schistosoma japonicum SJCHGC03274 ...    52   4e-05
AK000963_1(AK000963|pid:none) Homo sapiens cDNA FLJ10101 fis, cl...    48   6e-04
AL355987_16(AL355987|pid:none) Human DNA sequence from clone RP1...    48   6e-04
AK001184_1(AK001184|pid:none) Homo sapiens cDNA FLJ10322 fis, cl...    48   6e-04
AK128154_1(AK128154|pid:none) Homo sapiens cDNA FLJ46277 fis, cl...    48   6e-04
AK027586_1(AK027586|pid:none) Homo sapiens cDNA FLJ14680 fis, cl...    48   6e-04
CR954210_315(CR954210|pid:none) Ostreococcus tauri strain OTTH05...    44   0.008
CR933420_1(CR933420|pid:none) Paramecium tetraurelia, Small GTPa...    40   0.16
AM502254_676(AM502254|pid:none) Leishmania infantum chromosome 36.     39   0.46
CR933456_1(CR933456|pid:none) Paramecium tetraurelia, Small GTPa...    38   0.60
AB197071_1(AB197071|pid:none) Entamoeba histolytica gene for sma...    38   0.78
CP000249_3291(CP000249|pid:none) Frankia sp. CcI3, complete geno...    37   1.0
AK125511_1(AK125511|pid:none) Homo sapiens cDNA FLJ43523 fis, cl...    37   1.3
AY643760_1(AY643760|pid:none) Euplotes octocarinatus Rab GTPase ...    35   6.6
AY643765_1(AY643765|pid:none) Euplotes octocarinatus Rab GTPase ...    35   6.6
AK162461_1(AK162461|pid:none) Mus musculus 12 days embryo embryo...    35   6.6
(Q758X6) RecName: Full=Mitochondrial Rho GTPase 1;          EC=3...    34   8.6

>(Q9H935) RecName: Full=Putative GTP-binding protein Parf; AltName:
           Full=Partner of ARF;  &AL355987_13(AL355987|pid:none)
           &EF156752_1(EF156752|pid:none)
          Length = 729

 Score = 72.4 bits (176), Expect = 3e-11
 Identities = 33/70 (47%), Positives = 49/70 (70%)
 Frame = +3

Query: 72  PSDVSIMKPELKMKLNNKSIKYYLKFIIKGDRNTGKTSLFNRLQGLPFKELYTPTPKIQI 251
           P+ +  M   L+ +   K ++Y +K +I+GDRNTGKT+L++RLQG PF E Y PT +IQ+
Sbjct: 22  PAGLQSMNQALQRRFA-KGVQYNMKIVIRGDRNTGKTALWHRLQGRPFVEEYIPTQEIQV 80

Query: 252 SHINWDYKNT 281
           + I+W YK T
Sbjct: 81  TSIHWSYKTT 90

 Score = 48.1 bits (113), Expect = 6e-04
 Identities = 20/38 (52%), Positives = 28/38 (73%)
 Frame = +3

Query: 489 LDSKTINVYKNVNAVIFMMDPSKRWTFKYIEKEFNKVP 602
           LD++ ++VYKN N V+ M D +K+WTF YI +E  KVP
Sbjct: 129 LDAEFLDVYKNCNGVVMMFDITKQWTFNYILRELPKVP 166

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 895,824,701
Number of extensions: 12368102
Number of successful extensions: 33169
Number of sequences better than 10.0: 28
Number of HSP's gapped: 33041
Number of HSP's successfully gapped: 40
Length of query: 388
Length of database: 1,040,966,779
Length adjustment: 130
Effective length of query: 258
Effective length of database: 624,409,729
Effective search space: 161097710082
Effective search space used: 161097710082
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.53  gvh: 0.34  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 32.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U08935-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0