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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U08853-1
Contig ID Contig-U08853-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U08853-1 (Contig-U08853-1Q) /CSM_Contig/Contig-U08853-1Q.Seq.d
ACAACAACAACAACAACAATTACAACAACAACAACAATCAGTTAATATTA
TTAATATTAATAATCAATCATGTGAAAAAGGAATTTATTTAGAACCAAAT
AGATCAACACCATTAAGTGAAATGAAATTAACAACGATTAAAGAAACGAA
GAGTTTTAAGAAAATGTTTTATGTTTATTCTTCAGTTGTTGATGAAAATA
AATTATTAATTAGTATTAGTTATGAAACTAAAACTGGTGAAATATCACAT
ACATCAAAGTTATTTACAATTCCTGTAGTTGTTGGTTTCAATACACAATT
CCAATTCTTTAATGAACATTTACAATTGATTACTGATCTCTATGATCAAG
GTGTACAAACTAGAGAGAATCTTTTATTATTAAGTGAAATTAAATCACAA
TTACCTTTTAATATTATAATTGAAAATACAAAATTATCAATTTCAACTGC
TGCTGAATCTGCAAGAAATGCAACTTTATTATCACCAAATGTTGCTAATA
ATAATCCTAATACTCCAAATAATAATCCAAATAATAATAATCCAAATAAT
AATCCAAATAATCCAAATAATAATAGT----------CCAAATAATAATA
GTGGTGGTGTAAATAATAATATTATAAATAATCTTAATATGATTTTAGAT
GATAGCATTAATAATTTACCAGTTGCACAATTATTATCAGATTCAAATAA
ATTATTAAAAGATGTTGAATTATCAAAAAATACAACTTATAGTGGTTGGT
TTAATTTGATACCATTGGTAATTAGTGAATCTATTAGTTTTGGTTCTTTT
ATTATTGAATGGAGAAGAAAAGGTCAATCAAGTAAAATCATTTCAACATT
ACCAATTCAATTACCATATATTAGAACAACACCAAATCCATTCCTTGCAA
AAGTTCATGTACCTTCTTTTGGTATAGTCGGTCAACCATTAACCCAATCG
ATTATCATTAAAAATAATACAAACTTTTTACAAGAATTTGATCTACAAGT
TATTAATCCACCAAGTTATGGTAATTCTGATATTCCTTTCTTCTTTTCTG
GTGATAAACAATCAACTTTCTCAATTCATCCCGATTCTACTCATGAAATT
AAACATATTCTATTACCTTTAGTTGCTGGTAAATTAAATTTACCTCATTT
TAAAATTATCTCTAAACGTTTTAACAAAGAATTATCAAAAACTAAAAATA
CAAATAATTTTATTTTTGTAAAACCAAATTTAAATGGAATCAAAGTTAAT
AAAATTAAATAATAAAAATAAAAAAATAATAAATAAATAATAANAATTA
Gap gap included
Contig length 1289
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 5389257
End point 5387964
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U08853
List of clone(s) 

est1=AFL145F,1,578
est2=AFL145Z,579,1291
Translated Amino Acid sequence 
QQQQQQLQQQQQSVNIININNQSCEKGIYLEPNRSTPLSEMKLTTIKETKSFKKMFYVYS
SVVDENKLLISISYETKTGEISHTSKLFTIPVVVGFNTQFQFFNEHLQLITDLYDQGVQT
RENLLLLSEIKSQLPFNIIIENTKLSISTAAESARNATLLSPNVANNNPNTPNNNPNNNN
PNNNPNNPNNNS---

---PNNNSGGVNNNIINNLNMILDDSINNLPVAQLLSDSNKLLKDVELSKNTTYSGWFNL
IPLVISESISFGSFIIEWRRKGQSSKIISTLPIQLPYIRTTPNPFLAKVHVPSFGIVGQP
LTQSIIIKNNTNFLQEFDLQVINPPSYGNSDIPFFFSGDKQSTFSIHPDSTHEIKHILLP
LVAGKLNLPHFKIISKRFNKELSKTKNTNNFIFVKPNLNGIKVNKIK**k*knnk*iixi
Translated Amino Acid sequence (All Frames) 
Frame A:
ttttttitttttis*yy*y**sim*krnlfrtk*intik*neinnd*rneef*envlclf
fsc**k*iin*y*l*n*nw*nityikviynscscwfqytipil**tftidy*sl*srctn
*resfiik*n*ititf*yyn*kykiinfncc*ickkcnfiitkcc***s*ysk**sk***
sk**sk*sk***---

---PNNNSGGVNNNIINNLNMILDDSINNLPVAQLLSDSNKLLKDVELSKNTTYSGWFNL
IPLVISESISFGSFIIEWRRKGQSSKIISTLPIQLPYIRTTPNPFLAKVHVPSFGIVGQP
LTQSIIIKNNTNFLQEFDLQVINPPSYGNSDIPFFFSGDKQSTFSIHPDSTHEIKHILLP
LVAGKLNLPHFKIISKRFNKELSKTKNTNNFIFVKPNLNGIKVNKIK**k*knnk*iixi

Frame B:
QQQQQQLQQQQQSVNIININNQSCEKGIYLEPNRSTPLSEMKLTTIKETKSFKKMFYVYS
SVVDENKLLISISYETKTGEISHTSKLFTIPVVVGFNTQFQFFNEHLQLITDLYDQGVQT
RENLLLLSEIKSQLPFNIIIENTKLSISTAAESARNATLLSPNVANNNPNTPNNNPNNNN
PNNNPNNPNNNS---

---qiiivvv*iiil*iili*f*mialiiyqlhnyyqiqiny*kmlnyqkiqlivvgli*
yhw*lvnllvlvllllngeekvnqvksfqhyqfnyhileqhqihslqkfmylllv*svnh
*pnrlslkiiqtfyknliykllihqvmviliflssflvinnqlsqfipillmklnifyyl
*llvn*iylilklslnvltknyqklkiqiilfl*nqi*meskliklnnknkkiink**xl

Frame C:
nnnnnnynnnnnqlilliliinhvkkefi*nqidqhh*vk*n*qrlkkrrvlrkcfmfil
qllmkiny*lvlvmklklvkyhihqsylqfl*llvsihnsnslmniyn*llismikvykl
erifyy*vklnhnyllil*lkiqnyqfqlllnlqemqlyyhqmlliiililqiiiqiiii
qiiiqiiqiii---

---k***wwck**yyk*s*ydfr**h**ftsctiiirfk*iikrc*iikkynl*wlv*fd
tign**iy*fwffyy*mekkrsik*nhfnitnsitiy*nntksipckssctffwysrsti
npidyh*k*yklftri*stsy*stklw*f*ysfllfw**tinflnssrfys*n*tysitf
scw*ikftsf*nyl*tf*qriikn*kyk*fyfcktkfkwnqs**n*iikikk**innxn
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U08853-1 (Contig-U08853-1Q)
/CSM_Contig/Contig-U08853-1Q.Seq.d
         (1299 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U08853-1 (Contig-U08853-1Q) /CSM_Contig/Conti...  1146  0.0
Contig-U02933-1 (Contig-U02933-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U13207-1 (Contig-U13207-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U12334-1 (Contig-U12334-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U14858-1 (Contig-U14858-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U11254-1 (Contig-U11254-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12923-1 (Contig-U12923-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U12283-1 (Contig-U12283-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U11441-1 (Contig-U11441-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U11431-1 (Contig-U11431-1Q) /CSM_Contig/Conti...    38  0.023

>Contig-U08853-1 (Contig-U08853-1Q) /CSM_Contig/Contig-U08853-1Q.Seq.d
          Length = 1299

 Score = 1146 bits (578), Expect = 0.0
 Identities = 578/578 (100%)
 Strand = Plus / Plus

                                                                        
Query: 640  tgattttagatgatagcattaataatttaccagttgcacaattattatcagattcaaata 699
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640  tgattttagatgatagcattaataatttaccagttgcacaattattatcagattcaaata 699

                                                                        
Query: 700  aattattaaaagatgttgaattatcaaaaaatacaacttatagtggttggtttaatttga 759
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700  aattattaaaagatgttgaattatcaaaaaatacaacttatagtggttggtttaatttga 759

                                                                        
Query: 760  taccattggtaattagtgaatctattagttttggttcttttattattgaatggagaagaa 819
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760  taccattggtaattagtgaatctattagttttggttcttttattattgaatggagaagaa 819

                                                                        
Query: 820  aaggtcaatcaagtaaaatcatttcaacattaccaattcaattaccatatattagaacaa 879
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820  aaggtcaatcaagtaaaatcatttcaacattaccaattcaattaccatatattagaacaa 879

                                                                        
Query: 880  caccaaatccattccttgcaaaagttcatgtaccttcttttggtatagtcggtcaaccat 939
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880  caccaaatccattccttgcaaaagttcatgtaccttcttttggtatagtcggtcaaccat 939

                                                                        
Query: 940  taacccaatcgattatcattaaaaataatacaaactttttacaagaatttgatctacaag 999
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940  taacccaatcgattatcattaaaaataatacaaactttttacaagaatttgatctacaag 999

                                                                        
Query: 1000 ttattaatccaccaagttatggtaattctgatattcctttcttcttttctggtgataaac 1059
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 ttattaatccaccaagttatggtaattctgatattcctttcttcttttctggtgataaac 1059

                                                                        
Query: 1060 aatcaactttctcaattcatcccgattctactcatgaaattaaacatattctattacctt 1119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1060 aatcaactttctcaattcatcccgattctactcatgaaattaaacatattctattacctt 1119

                                                                        
Query: 1120 tagttgctggtaaattaaatttacctcattttaaaattatctctaaacgttttaacaaag 1179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1120 tagttgctggtaaattaaatttacctcattttaaaattatctctaaacgttttaacaaag 1179

                                                  
Query: 1180 aattatcaaaaactaaaaatacaaataattttattttt 1217
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 1180 aattatcaaaaactaaaaatacaaataattttattttt 1217


 Score =  908 bits (458), Expect = 0.0
 Identities = 458/458 (100%)
 Strand = Plus / Plus

                                                                       
Query: 38  tcagttaatattattaatattaataatcaatcatgtgaaaaaggaatttatttagaacca 97
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38  tcagttaatattattaatattaataatcaatcatgtgaaaaaggaatttatttagaacca 97

                                                                       
Query: 98  aatagatcaacaccattaagtgaaatgaaattaacaacgattaaagaaacgaagagtttt 157
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  aatagatcaacaccattaagtgaaatgaaattaacaacgattaaagaaacgaagagtttt 157

                                                                       
Query: 158 aagaaaatgttttatgtttattcttcagttgttgatgaaaataaattattaattagtatt 217
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 aagaaaatgttttatgtttattcttcagttgttgatgaaaataaattattaattagtatt 217

                                                                       
Query: 218 agttatgaaactaaaactggtgaaatatcacatacatcaaagttatttacaattcctgta 277
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 agttatgaaactaaaactggtgaaatatcacatacatcaaagttatttacaattcctgta 277

                                                                       
Query: 278 gttgttggtttcaatacacaattccaattctttaatgaacatttacaattgattactgat 337
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gttgttggtttcaatacacaattccaattctttaatgaacatttacaattgattactgat 337

                                                                       
Query: 338 ctctatgatcaaggtgtacaaactagagagaatcttttattattaagtgaaattaaatca 397
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ctctatgatcaaggtgtacaaactagagagaatcttttattattaagtgaaattaaatca 397

                                                                       
Query: 398 caattaccttttaatattataattgaaaatacaaaattatcaatttcaactgctgctgaa 457
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 caattaccttttaatattataattgaaaatacaaaattatcaatttcaactgctgctgaa 457

                                                 
Query: 458 tctgcaagaaatgcaactttattatcaccaaatgttgc 495
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tctgcaagaaatgcaactttattatcaccaaatgttgc 495


 Score = 36.2 bits (18), Expect = 0.092
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                            
Query: 47 attattaatattaataat 64
          ||||||||||||||||||
Sbjct: 64 attattaatattaataat 47


>Contig-U02933-1 (Contig-U02933-1Q) /CSM_Contig/Contig-U02933-1Q.Seq.d
          Length = 562

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 42  ttaatattattaatattaataat 64
           |||||||||||||||||||||||
Sbjct: 98  ttaatattattaatattaataat 120


 Score = 36.2 bits (18), Expect = 0.092
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 47  attattaatattaataat 64
           ||||||||||||||||||
Sbjct: 120 attattaatattaataat 103


>Contig-U13207-1 (Contig-U13207-1Q) /CSM_Contig/Contig-U13207-1Q.Seq.d
          Length = 159

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 43 taatattattaatattaataat 64
          ||||||||||||||||||||||
Sbjct: 80 taatattattaatattaataat 59


 Score = 38.2 bits (19), Expect = 0.023
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 46 tattattaatattaataat 64
          |||||||||||||||||||
Sbjct: 58 tattattaatattaataat 76


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 30,540
Number of Sequences: 6905
Number of extensions: 30540
Number of successful extensions: 4041
Number of sequences better than 10.0: 429
length of query: 1299
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1283
effective length of database: 5,564,391
effective search space: 7139113653
effective search space used: 7139113653
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.13
Homology vs DNA 
Query= Contig-U08853-1 (Contig-U08853-1Q) /CSM_Contig/Contig-U08853-1Q.Seq.d
         (1299 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ345329) Dictyostelium discoideum cDNA clone:dda23i11, 3' ...   991   0.0    1
(BJ328215) Dictyostelium discoideum cDNA clone:dda23i11, 5' ...   908   0.0    1
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    36   4e-04  14
(EF204913) Pleurotus ostreatus mitochondrion, complete genome.     42   6e-04  5
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         40   8e-04  14
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    32   0.003  18
(AE000783) Borrelia burgdorferi B31, complete genome.              40   0.004  16
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    46   0.007  15
(CR391987) Zebrafish DNA sequence from clone DKEY-84D14 in l...    54   0.014  1
(CR391927) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    54   0.014  1
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ...    36   0.017  12
(AM485199) Vitis vinifera contig VV79X002008.1, whole genome...    44   0.020  3
(AY534144) Saprolegnia ferax strain ATCC 36051 mitochondion,...    38   0.029  8
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    36   0.049  13
(AC103580) Trypanosoma brucei chromosome 4 clone RPCI93-5E12...    52   0.054  1
(AC004709) Plasmodium falciparum chromosome 12, *** SEQUENCI...    36   0.055  11
(CC505064) CH240_345P21.T7 CHORI-240 Bos taurus genomic clon...    48   0.073  2
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595...    36   0.073  8
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ...    34   0.097  15
(AX349036) Sequence 494 from Patent WO0202807.                     32   0.10   7
(AM180355) Clostridium difficile 630 complete genome.              36   0.11   22
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    36   0.12   15
(DQ642846) Plasmodium falciparum HB3 apicoplast, complete ge...    32   0.15   7
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    42   0.18   19
(AL645527) Mouse DNA sequence from clone RP23-26L6 on chromo...    50   0.21   1
(AC121397) Rattus norvegicus clone CH230-83K4, *** SEQUENCIN...    50   0.21   1
(AC096433) Rattus norvegicus clone CH230-42L22, WORKING DRAF...    50   0.21   1
(AM285302) Spiroplasma citri GII3-3X chromosome, contig Cont...    40   0.23   8
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome.       46   0.28   12
(AC006280) Plasmodium falciparum chromosome 12 clone 3D7, **...    36   0.29   5
(AP010180) Lotus japonicus genomic DNA, chromosome 1, clone:...    40   0.36   4
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    32   0.43   16
(AC006279) Plasmodium falciparum chromosome 12 clone 3D7, **...    34   0.55   14
(CR752654) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   0.60   9
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    36   0.68   19
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...    34   0.70   10
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont...    34   0.71   15
(AM376235) Oryzias latipes EST, clone FOE002-P00107-DPE-R_G04.     42   0.72   2
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    36   0.72   11
(DE045985) Oryzias latipes DNA, clone: ola1-011D11.R, genomi...    42   0.73   2
(DE059707) Oryzias latipes DNA, clone: ola1-103P24.F, genomi...    42   0.76   2
(AM462974) Vitis vinifera contig VV78X054132.7, whole genome...    44   0.77   3
(AM441083) Vitis vinifera contig VV78X198862.4, whole genome...    48   0.84   1
(CU633944) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.84   1
(AC185059) Bos taurus clone CH240-189G8, WORKING DRAFT SEQUE...    48   0.84   1
(EJ066026) 1095458040218 Global-Ocean-Sampling_GS-26-01-01-1...    48   0.84   1
(EJ055900) 1095456028459 Global-Ocean-Sampling_GS-26-01-01-1...    48   0.84   1
(EI430231) PV_GBa0021O10.r PV_GBa Phaseolus vulgaris genomic...    48   0.84   1
(DX398027) GH__Sa0007B06.b1 Gossypium herbaceum WGS library ...    48   0.84   1
(DX397779) GH__Sa0004E05.b1 Gossypium herbaceum WGS library ...    48   0.84   1
(DX248942) OR_ABa0136B13.r OR_ABa Oryza ridleyi genomic clon...    48   0.84   1
(CE642768) tigr-gss-dog-17000366864852 Dog Library Canis lup...    48   0.84   1
(CE453489) tigr-gss-dog-17000319383525 Dog Library Canis lup...    48   0.84   1
(AG243633) Lotus japonicus DNA, clone:LjT13e17_sfi.                48   0.84   1
(CP000095) Prochlorococcus marinus str. NATL2A, complete gen...    48   0.84   1
(AM677173) Entamoeba terrapinae GSS, clone terra128f05.p1k.        36   0.87   2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    38   0.89   13
(EJ962913) 1093022017264 Global-Ocean-Sampling_GS-30-02-01-1...    46   0.91   2
(BX230473) Danio rerio genomic clone DKEY-252M20, genomic su...    40   0.94   2
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084...    36   0.95   8
(EK347263) 1095467568503 Global-Ocean-Sampling_GS-31-01-01-1...    46   0.99   2
(BH521524) BOGBW63TF BOGB Brassica oleracea genomic clone BO...    42   1.0    2
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    34   1.0    11
(AL437414) T7 end of clone BC0AA009C01 of library BC0AA from...    36   1.0    2
(AL437296) T7 end of clone BC0AA008E04 of library BC0AA from...    36   1.1    2
(EK399408) 1095469535018 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.1    2
(DQ020602) Gonometa postica haplotype h10_145_2 AT-rich regi...    40   1.1    2
(DQ020601) Gonometa postica haplotype h9_127_3 AT-rich regio...    40   1.1    2
(DQ020597) Gonometa postica haplotype h5_P4_1 AT-rich region...    40   1.1    2
(DQ020600) Gonometa postica haplotype h8_147_2 AT-rich regio...    40   1.1    2
(DQ020596) Gonometa postica haplotype h4_RE57 AT-rich region...    40   1.1    2
(DQ020609) Gonometa postica haplotype h17_75_1 AT-rich regio...    40   1.1    2
(DQ020607) Gonometa postica haplotype h15_P203 AT-rich regio...    40   1.1    2
(DQ020606) Gonometa postica haplotype h14_128_3 AT-rich regi...    40   1.1    2
(DQ020605) Gonometa postica haplotype h13_PW11 AT-rich regio...    40   1.1    2
(DQ020599) Gonometa postica haplotype h7_149_4 AT-rich regio...    40   1.1    2
(DQ020598) Gonometa postica haplotype h6_141_1 AT-rich regio...    40   1.1    2
(DQ020594) Gonometa postica haplotype h2_121_7 AT-rich regio...    40   1.1    2
(DQ020610) Gonometa postica haplotype h18_WS1_2 AT-rich regi...    40   1.1    2
(DQ020608) Gonometa postica haplotype h16_PF38 AT-rich regio...    40   1.1    2
(DQ020603) Gonometa postica haplotype h11_148_6 AT-rich regi...    40   1.1    2
(DQ020595) Gonometa postica haplotype h3_54_2 AT-rich region...    40   1.1    2
(DQ020611) Gonometa postica haplotype h19_100_3 AT-rich regi...    40   1.1    2
(DQ020604) Gonometa postica haplotype h12_25_4 AT-rich regio...    40   1.1    2
(DQ020593) Gonometa postica haplotype h1_154_2 AT-rich regio...    40   1.1    2
(AL437873) T3 end of clone BC0AA012B02 of library BC0AA from...    36   1.1    2
(AL436641) T3 end of clone BC0AA004D12 of library BC0AA from...    36   1.1    2
(AL436895) T7 end of clone BC0AA006A02 of library BC0AA from...    36   1.2    2
(AC157107) Bos taurus clone CH240-60I15, WORKING DRAFT SEQUE...    36   1.2    7
(AL438159) T3 end of clone BC0AA013G06 of library BC0AA from...    36   1.2    2
(CP000382) Clostridium novyi NT, complete genome.                  40   1.2    20
(AL438422) T3 end of clone BC0AA015D03 of library BC0AA from...    36   1.2    2
(AL438351) T3 end of clone BC0AA014H11 of library BC0AA from...    36   1.2    2
(AL438639) T7 end of clone XBC0AA001F03 of library XBC0AA fr...    36   1.3    2
(CS468878) Sequence 69 from Patent EP1748080.                      34   1.3    9
(CS468877) Sequence 68 from Patent EP1748080.                      34   1.3    9
(CS419355) Sequence 69 from Patent WO2006094836.                   34   1.3    9
(CS419354) Sequence 68 from Patent WO2006094836.                   34   1.3    9
(AL035475) Plasmodium falciparum MAL4P2.                           36   1.4    10
(X95276) Plasmodium falciparum complete gene map of plastid-...    32   1.4    6

>(BJ345329) Dictyostelium discoideum cDNA clone:dda23i11, 3' end,
            single read.
          Length = 713

 Score =  991 bits (500), Expect = 0.0
 Identities = 500/500 (100%)
 Strand = Plus / Minus


Query: 669  ccagttgcacaattattatcagattcaaataaattattaaaagatgttgaattatcaaaa 728
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632  ccagttgcacaattattatcagattcaaataaattattaaaagatgttgaattatcaaaa 573


Query: 729  aatacaacttatagtggttggtttaatttgataccattggtaattagtgaatctattagt 788
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572  aatacaacttatagtggttggtttaatttgataccattggtaattagtgaatctattagt 513


Query: 789  tttggttcttttattattgaatggagaagaaaaggtcaatcaagtaaaatcatttcaaca 848
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512  tttggttcttttattattgaatggagaagaaaaggtcaatcaagtaaaatcatttcaaca 453


Query: 849  ttaccaattcaattaccatatattagaacaacaccaaatccattccttgcaaaagttcat 908
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452  ttaccaattcaattaccatatattagaacaacaccaaatccattccttgcaaaagttcat 393


Query: 909  gtaccttcttttggtatagtcggtcaaccattaacccaatcgattatcattaaaaataat 968
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392  gtaccttcttttggtatagtcggtcaaccattaacccaatcgattatcattaaaaataat 333


Query: 969  acaaactttttacaagaatttgatctacaagttattaatccaccaagttatggtaattct 1028
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332  acaaactttttacaagaatttgatctacaagttattaatccaccaagttatggtaattct 273


Query: 1029 gatattcctttcttcttttctggtgataaacaatcaactttctcaattcatcccgattct 1088
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272  gatattcctttcttcttttctggtgataaacaatcaactttctcaattcatcccgattct 213


Query: 1089 actcatgaaattaaacatattctattacctttagttgctggtaaattaaatttacctcat 1148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212  actcatgaaattaaacatattctattacctttagttgctggtaaattaaatttacctcat 153


Query: 1149 tttaaaattatctctaaacg 1168
            ||||||||||||||||||||
Sbjct: 152  tttaaaattatctctaaacg 133

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,414,213,967
Number of extensions: 96868421
Number of successful extensions: 8798434
Number of sequences better than 10.0: 325
Length of query: 1299
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1275
Effective length of database: 97,308,875,965
Effective search space: 124068816855375
Effective search space used: 124068816855375
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.24
Homology vs Protein 
Query= Contig-U08853-1 (Contig-U08853-1Q) /CSM_Contig/Contig-U08853-1Q.Seq.d
         (1299 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY099672_1(AY099672|pid:none) Arabidopsis thaliana unknown prote...    64   1e-08
AP004047_2(AP004047|pid:none) Oryza sativa Japonica Group genomi...    63   2e-08
AM442007_1(AM442007|pid:none) Vitis vinifera contig VV78X178741....    62   3e-08
BX538044_1(BX538044|pid:none) Homo sapiens mRNA; cDNA DKFZp686B1...    54   9e-06
AK022778_1(AK022778|pid:none) Homo sapiens cDNA FLJ12716 fis, cl...    54   9e-06
(Q9H8Q1) RecName: Full=UPF0636 protein C4orf41;  &AB385243_1(AB3...    54   1e-05
AK315057_1(AK315057|pid:none) Homo sapiens cDNA, FLJ96009.             54   1e-05
CR533553_1(CR533553|pid:none) Homo sapiens full open reading fra...    54   1e-05
(Q1RLX4) RecName: Full=UPF0636 protein C4orf41 homolog; AltName:...    54   2e-05
AY648743_1(AY648743|pid:none) Danio rerio foie gras mRNA, comple...    54   2e-05
BC056800_1(BC056800|pid:none) Danio rerio foie gras, mRNA (cDNA ...    53   2e-05
AY437850_1(AY437850|pid:none) Ctenopharyngodon idella unknown mR...    53   3e-05
BC167598_1(BC167598|pid:none) Xenopus tropicalis hypothetical pr...    52   5e-05
BC094246_1(BC094246|pid:none) Mus musculus RIKEN cDNA D030016E14...    52   5e-05
AK023390_1(AK023390|pid:none) Homo sapiens cDNA FLJ13328 fis, cl...    52   6e-05
AL844505_162(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    38   0.91
T25450(T25450) hypothetical protein B0412.3 - Caenorhabditis ele...    37   1.5
BC051724_1(BC051724|pid:none) Homo sapiens chromosome 4 open rea...    36   3.5
AK091146_1(AK091146|pid:none) Homo sapiens cDNA FLJ33827 fis, cl...    36   3.5
BC139745_1(BC139745|pid:none) Homo sapiens chromosome 4 open rea...    36   3.5

>AY099672_1(AY099672|pid:none) Arabidopsis thaliana unknown protein
            (At5g65950) mRNA, complete cds.
            &BT000263_1(BT000263|pid:none)
          Length = 865

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 1/161 (0%)
 Frame = +3

Query: 750  FNLIPLVXXXXXXXXXXXXXWRRKGQS-SKIISTLPIQLPYIRTTPNPFLAKVHVPSFGI 926
            F +IP               WRR+G + ++   +   +LP +    +P +  +  P + I
Sbjct: 701  FTVIPTTRTPKLGLGSIHLKWRREGGNITEAYVSTKHKLPEVNVEASPLVMSLDSPPYVI 760

Query: 927  VGQPLTQSIIIKNNTNFLQEFDLQVINPPSYGNSDIPFFFSGDKQSTFSIHPDSTHEIKH 1106
            +G+P T ++ I N T  LQE    + +  S       F  SG   +T S+ P S H + +
Sbjct: 761  LGEPFTYAVRICNQTQLLQEAKFGLADAQS-------FVLSGSHSNTVSVLPKSEHVLSY 813

Query: 1107 ILLPLVAGKLNLPHFKIISKRFNKELSKTKNTNNFIFVKPN 1229
             L+PL  G+  LP   + S R+  E   +   ++ +FV P+
Sbjct: 814  KLVPLTCGEQQLPKITLTSARYAAEFQPSAVASS-VFVFPS 853

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,346,407,985
Number of extensions: 22910390
Number of successful extensions: 55484
Number of sequences better than 10.0: 20
Number of HSP's gapped: 55459
Number of HSP's successfully gapped: 20
Length of query: 433
Length of database: 1,040,966,779
Length adjustment: 131
Effective length of query: 302
Effective length of database: 621,205,444
Effective search space: 187604044088
Effective search space used: 187604044088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.74  gvh: 0.24  alm: 0.32  top: 0.80  tms: 0.07  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for Contig-U08853-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0