| Contig-U08850-1 |
| Contig ID |
Contig-U08850-1 |
| Contig update |
2002. 9.13 |
| Contig sequence |
 |
| Gap |
gap included |
| Contig length |
1299 |
| Chromosome number (1..6, M) |
1 |
| Chromosome length |
4919822 |
| Start point |
1107621 |
| End point |
1106318 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
1 |
| Number of EST |
2 |
| Link to clone list |
U08850 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11.13 |
| Homology vs DNA |
Query= Contig-U08850-1 (Contig-U08850-1Q) /CSM_Contig/Contig-U08850-1Q.Seq.d
(1309 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ343303) Dictyostelium discoideum cDNA clone:dda22l16, 3' ... 1124 0.0 2
(BJ328028) Dictyostelium discoideum cDNA clone:dda22l16, 5' ... 609 0.0 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 34 3e-04 15
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 40 7e-04 14
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 42 0.001 13
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 36 0.002 18
(AC006281) Plasmodium falciparum chromosome 12 clone 3D7, **... 38 0.003 10
(AC115578) Dictyostelium discoideum chromosome 2 map complem... 48 0.003 4
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 36 0.004 12
(AE017308) Mycoplasma mobile 163K complete genome. 40 0.005 21
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 36 0.005 19
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 36 0.011 10
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 36 0.012 11
(EJ543544) 1092955416929 Global-Ocean-Sampling_GS-29-01-01-1... 54 0.014 1
(EJ531155) 1092955229045 Global-Ocean-Sampling_GS-29-01-01-1... 54 0.014 1
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2... 36 0.017 14
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 36 0.020 11
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 36 0.027 19
(AE001584) Borrelia burgdorferi B31 plasmid lp56, complete s... 40 0.028 7
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 32 0.034 15
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 38 0.042 14
(EJ722906) 1092959463638 Global-Ocean-Sampling_GS-30-02-01-1... 52 0.054 1
(EJ689173) 1092955248780 Global-Ocean-Sampling_GS-30-02-01-1... 52 0.054 1
(CC278289) CH261-95N1_RM1.1 CH261 Gallus gallus genomic clon... 52 0.054 1
(EK340635) 1095467060253 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.067 2
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 36 0.071 23
(AL844507) Plasmodium falciparum chromosome 8. 36 0.071 19
(AC115606) Dictyostelium discoideum chromosome 2 map 159760-... 36 0.073 6
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 32 0.073 13
(AC040902) Homo sapiens chromosome 3 clone RP11-791I24 map 3... 42 0.080 4
(AL035476) Plasmodium falciparum MAL4P3. 38 0.098 13
(AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5... 38 0.10 10
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 36 0.15 11
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI... 38 0.16 12
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 40 0.19 13
(CU914197) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.21 1
(AU266675) Dictyostelium discoideum vegetative cDNA clone:VS... 50 0.21 1
(BJ434032) Dictyostelium discoideum cDNA clone:ddv23o14, 3' ... 50 0.21 1
(BJ432717) Dictyostelium discoideum cDNA clone:ddv19d16, 3' ... 50 0.21 1
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8... 38 0.28 10
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117... 38 0.31 7
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2... 36 0.39 11
(AL844509) Plasmodium falciparum chromosome 13. 40 0.39 13
(AL034558) Plasmodium falciparum MAL3P2. 38 0.47 2
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6... 30 0.51 15
(CP000728) Clostridium botulinum F str. Langeland, complete ... 36 0.57 20
(AC115740) Mus musculus chromosome 3, clone RP23-476G18, com... 38 0.58 8
(BQ452422) PfESToaa96e02.y1 Plasmodium falciparum 3D7 asexua... 38 0.63 2
(AU262841) Dictyostelium discoideum vegetative cDNA clone:VS... 44 0.68 2
(AC004153) Plasmodium falciparum chromosome 12 clone 3D7, **... 34 0.69 11
(AE017263) Mesoplasma florum L1 complete genome. 36 0.69 19
(AL109814) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 38 0.70 7
(AX392736) Sequence 26 from Patent WO0212526. 36 0.75 6
(AR707083) Sequence 26 from patent US 6933145. 36 0.75 6
(AC201179) Strongylocentrotus purpuratus clone R3-14N12, WOR... 38 0.77 6
(AL356861) Human DNA sequence *** SEQUENCING CANCELLED *** f... 36 0.83 10
(BJ336231) Dictyostelium discoideum cDNA clone:dda53n05, 5' ... 40 0.83 2
(AF465309) Dictyostelium discoideum ABC transporter ABCA.7 (... 32 0.84 4
(BX255921) Zebrafish DNA sequence from clone CH211-236K19 in... 48 0.85 1
(AP003327) Homo sapiens genomic DNA, chromosome 11 clone:RP1... 48 0.85 1
(AC010583) Homo sapiens chromosome 11 clone RP11-61J24, comp... 48 0.85 1
(AC122632) Rattus norvegicus clone CH230-136C2, *** SEQUENCI... 48 0.85 1
(CU856347) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.85 1
(AC079123) Homo sapiens chromosome 11 clone RP11-507F16, WOR... 48 0.85 1
(CR626908) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.85 1
(AP003483) Homo sapiens genomic DNA, chromosome 11q, clone:R... 48 0.85 1
(AP000853) Homo sapiens genomic DNA, chromosome 11q25, clone... 48 0.85 1
(AC211596) Pongo abelii chromosome UNKNOWN clone CH276-3M3, ... 48 0.85 1
(AC181069) Strongylocentrotus purpuratus clone R3-3050D13, W... 48 0.85 1
(ER572824) 1093015800067 Global-Ocean-Sampling_GS-36-01-01-2... 48 0.85 1
(ER566420) 1093015772236 Global-Ocean-Sampling_GS-36-01-01-2... 48 0.85 1
(ER389219) 1094428771917 Global-Ocean-Sampling_GS-34-01-01-1... 48 0.85 1
(ER382108) 1094338789390 Global-Ocean-Sampling_GS-34-01-01-1... 48 0.85 1
(ER332973) 1092344277894 Global-Ocean-Sampling_GS-34-01-01-1... 48 0.85 1
(EK349916) 1095467862470 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.85 1
(EK186614) 1095458155323 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.85 1
(EJ965035) 1093022033474 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.85 1
(EJ771244) 1092966610147 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.85 1
(EJ707752) 1092956061242 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.85 1
(EJ672861) 1092955065596 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.85 1
(EJ475269) 1095403439070 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.85 1
(EJ351374) 1092963590600 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.85 1
(EJ077504) 1095458134593 Global-Ocean-Sampling_GS-26-01-01-1... 48 0.85 1
(BJ403079) Dictyostelium discoideum cDNA clone:dds24a04, 3' ... 48 0.85 1
(AC092927) Homo sapiens 3 BAC RP11-791I24 (Roswell Park Canc... 42 0.88 4
(ER342720) 1092344357038 Global-Ocean-Sampling_GS-34-01-01-1... 46 0.89 2
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 36 0.91 19
(EY447957) CBAZ1779.rev CBAZ Tubifex tubifex Embryos and juv... 42 0.96 2
(AC116032) Dictyostelium discoideum chromosome 2 map 4158743... 38 1.0 6
(EK126142) 1092984300311 Global-Ocean-Sampling_GS-31-01-01-1... 38 1.1 2
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 38 1.2 13
(AC116551) Dictyostelium discoideum chromosome 2 map complem... 32 1.2 12
(AC007980) Arabidopsis thaliana chromosome I BAC F14I3 genom... 34 1.2 6
(AJ927990) Theileria annulata EST, clone tam012f05_q1k. 38 1.3 3
(CU104770) Zebrafish DNA sequence from clone DKEY-176K21 in ... 36 1.4 5
(AJ005262) Dictyostelium discoideum gene encoding a novel gl... 32 1.4 4
(AC116921) Dictyostelium discoideum chromosome 2 map 4624505... 34 1.5 6
(AM470264) Vitis vinifera contig VV78X248177.31, whole genom... 32 1.5 5
(BQ477092) meladema2e04.g Meladema coriacea cDNA Meladema co... 40 1.5 3
(AC216455) Populus trichocarpa clone POP032-C02, complete se... 34 1.5 7
>(BJ343303) Dictyostelium discoideum cDNA clone:dda22l16, 3' end,
single read.
Length = 673
Score = 1124 bits (567), Expect(2) = 0.0
Identities = 567/567 (100%)
Strand = Plus / Minus
Query: 638 ctataaatactcaataccttttaaataatggtaatggtaatggtacaacttttgaaatga 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ctataaatactcaataccttttaaataatggtaatggtaatggtacaacttttgaaatga 614
Query: 698 tattacaaattgaaaattcaaacaatgatatgtattctgtttcatgggagatatcagata 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tattacaaattgaaaattcaaacaatgatatgtattctgtttcatgggagatatcagata 554
Query: 758 cgaataattcaatactttttaataataagaaaacaaattcattgattttatttagtttat 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cgaataattcaatactttttaataataagaaaacaaattcattgattttatttagtttat 494
Query: 818 cagatatttattgttttaatcaatcaattgtaccaaatcatgctcatttaagactactat 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cagatatttattgttttaatcaatcaattgtaccaaatcatgctcatttaagactactat 434
Query: 878 caaatgatgaaatattaaaattattaaatcattcatcaactgacactacttcaacagagt 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 caaatgatgaaatattaaaattattaaatcattcatcaactgacactacttcaacagagt 374
Query: 938 caacttattcagttgattcagtttatctttcaattgttattccacaacaacaacagcaat 997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 caacttattcagttgattcagtttatctttcaattgttattccacaacaacaacagcaat 314
Query: 998 taaataatagtactggtacttatcaagttcaatttgcaattaatgcttataattattcaa 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 taaataatagtactggtacttatcaagttcaatttgcaattaatgcttataattattcaa 254
Query: 1058 ctcttaaattccctgaatgggcaatcgctttaattatcgttggtgcagttgcaagttttg 1117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ctcttaaattccctgaatgggcaatcgctttaattatcgttggtgcagttgcaagttttg 194
Query: 1118 cttttgttttattcatactggttcttataattagaaaaaagagacaacttaaaaatttaa 1177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 cttttgttttattcatactggttcttataattagaaaaaagagacaacttaaaaatttaa 134
Query: 1178 gtgtaaataattctgaagaaaataata 1204
|||||||||||||||||||||||||||
Sbjct: 133 gtgtaaataattctgaagaaaataata 107
Score = 103 bits (52), Expect(2) = 0.0
Identities = 52/52 (100%)
Strand = Plus / Minus
Query: 1224 caataataaaaataatgatgaaagtaaaccattacttcattaattaatttta 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 caataataaaaataatgatgaaagtaaaccattacttcattaattaatttta 36
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,587,183,938
Number of extensions: 106953335
Number of successful extensions: 9472305
Number of sequences better than 10.0: 232
Length of query: 1309
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1285
Effective length of database: 97,308,875,965
Effective search space: 125041905615025
Effective search space used: 125041905615025
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 6.24 |
| Homology vs Protein |
Query= Contig-U08850-1 (Contig-U08850-1Q) /CSM_Contig/Contig-U08850-1Q.Seq.d
(1309 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK176188_1(AK176188|pid:none) Arabidopsis thaliana mRNA for majo... 52 4e-05
AB072425_1(AB072425|pid:none) Oryzias latipes Reln mRNA for reel... 50 1e-04
AC103550_20(AC103550|pid:none) Oryza sativa chromosome 3 BAC OSJ... 50 2e-04
AF090951_1(AF090951|pid:none) Lacerta viridis reelin (reln) mRNA... 49 4e-04
AM463622_2(AM463622|pid:none) Vitis vinifera contig VV78X244153.... 48 9e-04
S58870(S58870;S71844;I49297)reelin precursor - mouse 45 0.006
AK017094_1(AK017094|pid:none) Mus musculus adult male testis cDN... 45 0.006
D63520_1(D63520|pid:none) Mouse reeler mRNA, complete cds. 45 0.006
(Q60841) RecName: Full=Reelin; EC=3.4.21.-; AltName: Fu... 45 0.006
AB062680_1(AB062680|pid:none) Rattus norvegicus Reln mRNA for re... 45 0.006
AK297459_1(AK297459|pid:none) Homo sapiens cDNA FLJ51503 complet... 45 0.008
(P78509) RecName: Full=Reelin; EC=3.4.21.-; Flags: Prec... 45 0.008
BC144305_1(BC144305|pid:none) Homo sapiens cDNA clone MGC:177842... 45 0.008
AY650356_1(AY650356|pid:none) Macaca fascicularis reelin mRNA, p... 45 0.008
AK127044_1(AK127044|pid:none) Homo sapiens cDNA FLJ45101 fis, cl... 45 0.008
AL049689_1(AL049689|pid:none) Novel human mRNA from chromosome 1... 45 0.008
AK293863_1(AK293863|pid:none) Homo sapiens cDNA FLJ51504 complet... 45 0.008
(Q9UQP3) RecName: Full=Tenascin-N; Short=TN-N; Flags: P... 45 0.008
EU596506_1(EU596506|pid:none) Rattus norvegicus tenascin C (Tnc)... 44 0.010
(Q9UMG7) RecName: Full=Tenascin-X; Short=TN-X; AltName:... 44 0.017
AL049547_2(AL049547|pid:none) Human DNA sequence from clone RP1-... 44 0.017
AL645922_24(AL645922|pid:none) Human DNA sequence from clone XXb... 44 0.017
(Q8BYI9) RecName: Full=Tenascin-R; Short=TN-R; AltName:... 44 0.017
AC096673_18(AC096673|pid:none) Trypanosoma brucei chromosome 3 c... 44 0.017
X71923_1(X71923|pid:none) H.sapiens XB gene for tenascin-X, exon... 44 0.017
(Q05546) RecName: Full=Tenascin-R; Short=TN-R; AltName:... 44 0.017
BC132392_1(BC132392|pid:none) Mus musculus tenascin R, mRNA (cDN... 44 0.017
(Q6DFV8) RecName: Full=Von Willebrand factor D and EGF domain-co... 43 0.022
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso... 43 0.029
AB010266_2(AB010266|pid:none) Mus musculus Creb-rp, Tnx, Cyp21 g... 42 0.037
AC116967_8(AC116967|pid:none) Dictyostelium discoideum chromosom... 42 0.037
AC116982_41(AC116982|pid:none) Dictyostelium discoideum chromoso... 42 0.049
AC116960_61(AC116960|pid:none) Dictyostelium discoideum chromoso... 42 0.064
(Q80YX1) RecName: Full=Tenascin; Short=TN; AltName: Ful... 42 0.064
AB210038_1(AB210038|pid:none) Homo sapiens mRNA for TNC variant ... 42 0.064
(P24821) RecName: Full=Tenascin; Short=TN; AltName: Ful... 42 0.064
AL732556_3(AL732556|pid:none) Mouse DNA sequence from clone RP24... 42 0.064
AL732556_1(AL732556|pid:none) Mouse DNA sequence from clone RP24... 42 0.064
BC151843_1(BC151843|pid:none) Homo sapiens tenascin C, mRNA (cDN... 42 0.064
AK304015_1(AK304015|pid:none) Homo sapiens cDNA FLJ60213 complet... 42 0.064
AC116967_7(AC116967|pid:none) Dictyostelium discoideum chromosom... 41 0.083
(Q9JLN6) RecName: Full=Disintegrin and metalloproteinase domain-... 41 0.11
BT070410_1(BT070410|pid:none) Picea sitchensis clone WS02727_L02... 40 0.14
AB209157_1(AB209157|pid:none) Homo sapiens mRNA for ADAM15 isofo... 40 0.19
AL451085_35(AL451085|pid:none) Human DNA sequence from clone RP1... 40 0.19
AF314227_11(AF314227|pid:none) Homo sapiens FLJ32785 (FLJ32785) ... 40 0.19
AY518542_1(AY518542|pid:none) Homo sapiens ADAM-15 precursor mRN... 40 0.19
AF314227_10(AF314227|pid:none) Homo sapiens FLJ32785 (FLJ32785) ... 40 0.19
BC129830_1(BC129830|pid:none) Homo sapiens tenascin R (restricti... 40 0.19
G02390(G02390;PC4263) disintegrin-like metalloproteinase MDC15 (... 40 0.19
(Q8K410) RecName: Full=Disintegrin and metalloproteinase domain-... 40 0.19
AK152769_1(AK152769|pid:none) Mus musculus bone marrow macrophag... 40 0.19
A60385(A60385)monocyte surface antigen MS2 precursor - mouse 40 0.19
AF314227_8(AF314227|pid:none) Homo sapiens FLJ32785 (FLJ32785) g... 40 0.19
AK089169_1(AK089169|pid:none) Mus musculus NOD-derived CD11c +ve... 40 0.19
AX235004_1(AX235004|pid:none) Sequence 7 from Patent WO0162905. ... 40 0.19
X98085_1(X98085|pid:none) H.sapiens mRNA for tenascin-R. 40 0.19
AF314227_9(AF314227|pid:none) Homo sapiens FLJ32785 (FLJ32785) g... 40 0.19
U41767_1(U41767|pid:none) Human metargidin precursor mRNA, compl... 40 0.19
AK295823_1(AK295823|pid:none) Homo sapiens cDNA FLJ60578 complet... 40 0.19
(Q05910) RecName: Full=Disintegrin and metalloproteinase domain-... 40 0.19
BC060983_1(BC060983|pid:none) Mus musculus a disintegrin and met... 40 0.19
AF314227_4(AF314227|pid:none) Homo sapiens FLJ32785 (FLJ32785) g... 40 0.19
AK152675_1(AK152675|pid:none) Mus musculus bone marrow macrophag... 40 0.19
AF314227_2(AF314227|pid:none) Homo sapiens FLJ32785 (FLJ32785) g... 40 0.19
AY892644_1(AY892644|pid:none) Synthetic construct Homo sapiens c... 40 0.19
AJ566620_1(AJ566620|pid:none) Paramecium tetraurelia macronuclea... 40 0.19
AL451085_36(AL451085|pid:none) Human DNA sequence from clone RP1... 40 0.19
Z94055_1(Z94055|pid:none) Human DNA sequence from clone RP1-24M1... 40 0.19
AF314227_7(AF314227|pid:none) Homo sapiens FLJ32785 (FLJ32785) g... 40 0.19
AE014134_2530(AE014134|pid:none) Drosophila melanogaster chromos... 40 0.24
X08030_1(X08030|pid:none) Chicken mRNA fragment for tenascin (cT... 40 0.24
CP000592_153(CP000592|pid:none) Ostreococcus lucimarinus CCE9901... 40 0.24
AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso... 39 0.32
BC071284_1(BC071284|pid:none) Danio rerio tenascin W, mRNA (cDNA... 39 0.32
FJ188470_1(FJ188470|pid:none) Gallus gallus disintegrin and meta... 39 0.32
FN357292_136(FN357292|pid:none) Schistosoma mansoni genome seque... 39 0.32
M24630_1(M24630|pid:none) Human hexabrachion mRNA, partial cds. 39 0.32
X56160_1(X56160|pid:none) Human mRNA for tenascin. 39 0.32
BC146626_1(BC146626|pid:none) Xenopus laevis hypothetical protei... 39 0.41
BC061796_1(BC061796|pid:none) Rattus norvegicus a disintegrin an... 39 0.41
(Q9QYV0) RecName: Full=Disintegrin and metalloproteinase domain-... 39 0.41
AJ580920_1(AJ580920|pid:none) Mus musculus mRNA for tenascin-W p... 39 0.54
BC163556_1(BC163556|pid:none) Danio rerio tenascin C, mRNA (cDNA... 39 0.54
BX666060_2(BX666060|pid:none) Zebrafish DNA sequence from clone ... 39 0.54
AM231718_1(AM231718|pid:none) Gallus gallus mRNA for tenascin-W ... 39 0.54
AY630342_1(AY630342|pid:none) Manduca sexta plasmatocyte-specifi... 39 0.54
(Q80Z71) RecName: Full=Tenascin-N; Short=TN-N; Flags: P... 39 0.54
AY704216_1(AY704216|pid:none) Mus musculus reelin (Reln) mRNA, p... 39 0.54
AK170101_1(AK170101|pid:none) Mus musculus NOD-derived CD11c +ve... 39 0.54
AX133531_1(AX133531|pid:none) Sequence 1 from Patent WO0131011. 39 0.54
BC138335_1(BC138335|pid:none) Mus musculus tenascin N, mRNA (cDN... 39 0.54
BX004856_1(BX004856|pid:none) Zebrafish DNA sequence from clone ... 38 0.70
AY568568_1(AY568568|pid:none) Bos taurus reelin (RELN) mRNA, par... 38 0.70
BC155681_1(BC155681|pid:none) Xenopus tropicalis hypothetical pr... 38 0.70
AF008227_1(AF008227|pid:none) Drosophila melanogaster odd Oz pro... 38 0.70
A30889(A30889) integrin beta chain precursor - fruit fly (Drosop... 38 0.70
EU706639_1(EU706639|pid:none) Drosophila melanogaster isolate Co... 38 0.70
AE014296_3877(AE014296|pid:none) Drosophila melanogaster chromos... 38 0.70
A54148(A54148)odz protein - fruit fly (Drosophila sp.) 38 0.70
AL807754_1(AL807754|pid:none) Zebrafish DNA sequence from clone ... 38 0.70
FJ594762_1(FJ594762|pid:none) Ictalurus punctatus a disintegrin ... 38 0.70
AE014296_3878(AE014296|pid:none) Drosophila melanogaster chromos... 38 0.70
AX234998_1(AX234998|pid:none) Sequence 1 from Patent WO0162905. ... 38 0.92
DQ096731_1(DQ096731|pid:none) Danio rerio tenascin-C (TNC) mRNA,... 38 0.92
EU218035_1(EU218035|pid:none) Drosophila simulans strain MD99 my... 38 0.92
AK312834_1(AK312834|pid:none) Homo sapiens cDNA, FLJ93272, highl... 38 0.92
(P78325) RecName: Full=Disintegrin and metalloproteinase domain-... 38 0.92
AL773560_5(AL773560|pid:none) Pig DNA sequence from clone PigI-5... 37 1.2
(Q9QYP0) RecName: Full=Multiple epidermal growth factor-like dom... 37 1.2
(Q9UKQ2) RecName: Full=Disintegrin and metalloproteinase domain-... 37 1.6
AJ242015_1(AJ242015|pid:none) Homo sapiens mRNA for eMDC II prot... 37 1.6
AF137334_1(AF137334|pid:none) Homo sapiens metalloprotease disin... 37 1.6
AK303437_1(AK303437|pid:none) Homo sapiens cDNA FLJ61514 complet... 37 1.6
J03641_1(J03641|pid:none) Chicken cytotactin mRNA, partial cds, ... 37 1.6
(O75077) RecName: Full=Disintegrin and metalloproteinase domain-... 37 2.0
AC010731_1(AC010731|pid:none) Homo sapiens BAC clone RP11-363B11... 37 2.0
AB025413_1(AB025413|pid:none) Mus musculus mRNA for Ten-m4, comp... 37 2.0
AY286489_1(AY286489|pid:none) Danio rerio tenascin-R mRNA, compl... 37 2.0
AL645534_3(AL645534|pid:none) Mouse DNA sequence from clone RP23... 37 2.0
FJ188469_1(FJ188469|pid:none) Gallus gallus disintegrin and meta... 37 2.0
AL645534_5(AL645534|pid:none) Mouse DNA sequence from clone RP23... 37 2.0
(Q3UHK6) RecName: Full=Teneurin-4; Short=Ten-4; AltName... 37 2.0
AL645534_2(AL645534|pid:none) Mouse DNA sequence from clone RP23... 37 2.0
BC123411_1(BC123411|pid:none) Bos taurus ADAM metallopeptidase d... 37 2.0
AY545640_1(AY545640|pid:none) Mus musculus a disintegrin and met... 37 2.0
AL683801_4(AL683801|pid:none) Mouse DNA sequence from clone DN-7... 37 2.0
AJ437480_3(AJ437480|pid:none) Paramecium tetraurelia partial npe... 37 2.0
(Q9R1V7) RecName: Full=Disintegrin and metalloproteinase domain-... 37 2.0
AX235014_1(AX235014|pid:none) Sequence 17 from Patent WO0162905.... 37 2.0
AL683801_5(AL683801|pid:none) Mouse DNA sequence from clone DN-7... 37 2.0
AK147329_1(AK147329|pid:none) Mus musculus cDNA, RIKEN full-leng... 37 2.0
AL683801_1(AL683801|pid:none) Mouse DNA sequence from clone DN-7... 37 2.0
(Q6N022) RecName: Full=Teneurin-4; Short=Ten-4; AltName... 36 2.7
CP001327_152(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 36 2.7
EU176173_1(EU176173|pid:none) Synthetic construct Homo sapiens c... 36 2.7
CP000413_72(CP000413|pid:none) Lactobacillus gasseri ATCC 33323,... 36 2.7
(P97607) RecName: Full=Protein jagged-2; Short=Jagged2;... 36 2.7
AF010137_1(AF010137|pid:none) Mus musculus Jagged 2 protein mRNA... 36 2.7
AK091464_1(AK091464|pid:none) Homo sapiens cDNA FLJ34145 fis, cl... 36 3.5
AF003521_1(AF003521|pid:none) Homo sapiens Jagged 2 mRNA, comple... 36 3.5
BC024214_1(BC024214|pid:none) Homo sapiens ADAM metallopeptidase... 36 3.5
AF311317_1(AF311317|pid:none) Homo sapiens disintegrin and metal... 36 3.5
(Q9W7R3) RecName: Full=Teneurin-4; Short=Ten-4; AltName... 36 3.5
AB377286_1(AB377286|pid:none) Lethenteron japonicum Factor X-2 m... 36 3.5
AB462931_1(AB462931|pid:none) Synthetic construct DNA, clone: pF... 36 3.5
AF029778_1(AF029778|pid:none) Homo sapiens Jagged2 (JAG2) mRNA, ... 36 3.5
AB011541_1(AB011541|pid:none) Homo sapiens mRNA for MEGF8, parti... 36 3.5
AF029779_1(AF029779|pid:none) Homo sapiens hJAG2.del-E6 (JAG2) m... 36 3.5
AF020201_1(AF020201|pid:none) Homo sapiens Jagged 2 mRNA, comple... 36 3.5
Y14330_1(Y14330|pid:none) Homo sapiens partial mRNA for jagged2 ... 36 3.5
AF134707_1(AF134707|pid:none) Homo sapiens disintegrin and metal... 36 3.5
AE014298_1834(AE014298|pid:none) Drosophila melanogaster chromos... 35 4.6
(Q9P273) RecName: Full=Teneurin-3; Short=Ten-3; AltName... 35 4.6
Z81110_2(Z81110|pid:none) Caenorhabditis elegans Cosmid T01D3, c... 35 4.6
X68794_1(X68794|pid:none) Drosophila melanogaster mRNA for type ... 35 4.6
T22945(T22945;T24295)hypothetical protein T01D3.1 - Caenorhabdit... 35 4.6
AK122188_1(AK122188|pid:none) Mus musculus mRNA for mKIAA0021 pr... 35 6.0
BC146617_1(BC146617|pid:none) Xenopus tropicalis odz, odd Oz/ten... 35 6.0
BC140615_1(BC140615|pid:none) Bos taurus ADAM metallopeptidase d... 35 6.0
T21011(T21011)hypothetical protein F16B12.2 - Caenorhabditis ele... 35 6.0
Z81064_2(Z81064|pid:none) Caenorhabditis elegans Cosmid F16B12, ... 35 6.0
AY953138_1(AY953138|pid:none) Rattus norvegicus ADAM9 mRNA, comp... 35 6.0
AK155672_1(AK155672|pid:none) Mus musculus B6-derived CD11 +ve d... 35 6.0
(Q61072) RecName: Full=Disintegrin and metalloproteinase domain-... 35 6.0
X99794_1(X99794|pid:none) R.norvegicus mRNA for fertilin beta. 35 7.8
(Q9W7R4) RecName: Full=Teneurin-3; Short=Ten-3; AltName... 35 7.8
(O35674) RecName: Full=Disintegrin and metalloproteinase domain-... 35 7.8
AK147549_1(AK147549|pid:none) Mus musculus cDNA, RIKEN full-leng... 35 7.8
BC145886_1(BC145886|pid:none) Mus musculus sushi, nidogen and EG... 35 7.8
AK172116_1(AK172116|pid:none) Mus musculus activated spleen cDNA... 35 7.8
AF463419_1(AF463419|pid:none) Naegleria gruberi basal body prote... 35 7.8
CR388098_1(CR388098|pid:none) Zebrafish DNA sequence from clone ... 35 7.8
(Q70E20) RecName: Full=Sushi, nidogen and EGF-like domain-contai... 35 7.8
AB096093_1(AB096093|pid:none) Mus musculus ADAM19 mRNA for meltr... 35 7.8
BX324137_1(BX324137|pid:none) Zebrafish DNA sequence from clone ... 35 7.8
>AK176188_1(AK176188|pid:none) Arabidopsis thaliana mRNA for major
surface like glycoprotein, complete cds, clone:
RAFL23-05-J11. &AK221227_1(AK221227|pid:none)
&AK230319_1(AK230319|pid:none)
Length = 841
Score = 52.4 bits (124), Expect = 4e-05
Identities = 21/55 (38%), Positives = 30/55 (54%)
Frame = +2
Query: 422 VLGSNTYLYTNQSCPGKCKDHGVCSIGSTCLCNEGYASFDCSHKITNDALSLPGG 586
+LG + + N+SCP C HG C+ C+C G+ DCS I ++ SL GG
Sbjct: 621 LLGYHGHDCRNRSCPNNCNGHGKCTTQGVCICENGFTGIDCSTAICDEQCSLHGG 675
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,471,393,752
Number of extensions: 24657025
Number of successful extensions: 73895
Number of sequences better than 10.0: 176
Number of HSP's gapped: 73483
Number of HSP's successfully gapped: 347
Length of query: 436
Length of database: 1,040,966,779
Length adjustment: 131
Effective length of query: 305
Effective length of database: 621,205,444
Effective search space: 189467660420
Effective search space used: 189467660420
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
1 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |