Contig-U08849-1 |
Contig ID |
Contig-U08849-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
gap included |
Contig length |
869 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
809624 |
End point |
808752 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
1 |
Number of EST |
2 |
Link to clone list |
U08849 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.13 |
Homology vs DNA |
Query= Contig-U08849-1 (Contig-U08849-1Q) /CSM_Contig/Contig-U08849-1Q.Seq.d (879 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ327993) Dictyostelium discoideum cDNA clone:dda22d14, 5' ... 442 0.0 4 (BJ343262) Dictyostelium discoideum cDNA clone:dda22d14, 3' ... 250 8e-62 1 (DT571549) EST1082189 GH_TMO Gossypium hirsutum cDNA, mRNA s... 42 0.034 2 (DT558030) EST1068670 GH_TMO Gossypium hirsutum cDNA, mRNA s... 42 0.035 2 (CU861468) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.56 1 (CU856437) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.56 1 (CU606938) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.56 1 (EK032893) 1092956090019 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.56 1 (CT385721) Sus scrofa genomic clone CH242-444E20, genomic su... 48 0.56 1 (CT239159) Sus scrofa genomic clone CH242-143N6, genomic sur... 48 0.56 1 (CL643571) CH213-51F02.T7 CH213 Gasterosteus aculeatus genom... 48 0.56 1 (DB613182) Halocynthia roretzi cDNA clone:mae32n10, 5' end. 48 0.56 1 (DB608759) Halocynthia roretzi cDNA clone:mae15j23, 5' end. 48 0.56 1 (EU880585) Ehrlichia canis strain Bangkok patatin gene, comp... 48 0.56 1 (CP000939) Clostridium botulinum B1 str. Okra, complete genome. 48 0.56 1 (CP000107) Ehrlichia canis str. Jake, complete genome. 48 0.56 1 (BZ696021) SP__Ba0072H20.f SP__Ba Sorghum propinquum genomic... 38 0.63 2 (AC192265) Pan troglodytes chromosome X clone CH251-476F8, W... 38 1.4 5 (EK059406) 1092960062743 Global-Ocean-Sampling_GS-31-01-01-1... 38 1.5 2 (AM462251) Vitis vinifera contig VV78X147749.46, whole genom... 40 1.6 3 (EJ408521) 1093012115474 Global-Ocean-Sampling_GS-28-01-01-1... 40 1.7 2 (EJ262443) 1095349049880 Global-Ocean-Sampling_GS-27-01-01-1... 40 1.8 2 (EK294774) 1095462343456 Global-Ocean-Sampling_GS-31-01-01-1... 46 2.2 1 (EK229549) 1095460173352 Global-Ocean-Sampling_GS-31-01-01-1... 46 2.2 1 (EJ716129) 1092959419520 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.2 1 (EJ706266) 1092956054494 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.2 1 (CZ508173) GMW2-65D9a.b1 GMW2 Glycine max genomic, genomic s... 46 2.2 1 (DB744442) Apis mellifera head cDNA, RIKEN full-length enric... 46 2.2 1 (AP009604) Solanum lycopersicum DNA, chromosome 8, clone: C0... 38 2.5 6 (AF250284) Amsacta moorei entomopoxvirus, complete genome. 36 2.6 7 (EK027330) 1092955380490 Global-Ocean-Sampling_GS-31-01-01-1... 38 2.7 3 (EK056136) 1092960024733 Global-Ocean-Sampling_GS-31-01-01-1... 38 2.8 3 (AC151438) Carollia perspicillata clone 438K12, WORKING DRAF... 38 2.9 2 (AL356122) Human DNA sequence from clone RP11-61P22 on chrom... 42 3.4 3 (AM441390) Vitis vinifera contig VV78X168574.16, whole genom... 34 4.4 4 (AC096647) Homo sapiens BAC clone RP11-2G16 from 2, complete... 38 4.5 4 (AC181953) Strongylocentrotus purpuratus clone R3-1005C19, W... 36 5.6 3 (BU390809) 603805715F1 CSEQCHN57 Gallus gallus cDNA clone Ch... 42 5.6 2 (AC151628) Carollia perspicillata clone 544P19, WORKING DRAF... 38 6.8 3 (AX339140) Sequence 7 from Patent WO0176451. 38 6.9 3 (EJ249251) 1095344017926 Global-Ocean-Sampling_GS-27-01-01-1... 36 6.9 2 (EJ757092) 1092963091426 Global-Ocean-Sampling_GS-30-02-01-1... 38 7.1 2 (CR752641) Zebrafish DNA sequence from clone DKEY-1P18 in li... 34 8.5 7 (BV227184) S233P6192FA9.T0 LabradorRetriever Canis familiari... 44 8.8 1 (AC163676) Mus musculus BAC clone RP24-81A22 from chromosome... 44 8.8 1 (AC138548) Mus musculus chromosome 3, clone RP24-210N9, comp... 44 8.8 1 (AC131695) Mus musculus BAC clone RP23-396F8 from chromosome... 44 8.8 1 (AC119986) Mus musculus chromosome 14, clone RP24-502B4, com... 44 8.8 1 (AC188686) Pan troglodytes BAC clone CH251-653M2 from chromo... 44 8.8 1 (AC148826) Pan troglodytes BAC clone CH251-484F13 from chrom... 44 8.8 1 (AC148318) Pan troglodytes BAC clone CH251-496K6 from chromo... 44 8.8 1 (AM427150) Vitis vinifera contig VV78X115655.5, whole genome... 44 8.8 1 (CQ691630) Sequence 36556 from Patent WO02070737. 44 8.8 1 (AL356277) Human DNA sequence from clone RP11-554D15 on chro... 44 8.8 1 (AC067817) Homo sapiens chromosome 8, clone RP11-723D22, com... 44 8.8 1 (AC004534) Homo sapiens PAC clone RP4-545C24 from 7q21-q22, ... 44 8.8 1 (AC148811) Canis familiaris clone RP81-314M16, WORKING DRAFT... 44 8.8 1 (AC134602) Mus musculus chromosome UNK clone RP23-245N18, WO... 44 8.8 1 (AC109526) Rattus norvegicus clone CH230-288E17, *** SEQUENC... 44 8.8 1 (CU633947) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.8 1 (CU582879) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.8 1 (CU570668) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.8 1 (AL355311) Human DNA sequence *** SEQUENCING CANCELLED *** f... 44 8.8 1 (AC183034) Bos taurus clone CH240-106P14, WORKING DRAFT SEQU... 44 8.8 1 (AC179828) Strongylocentrotus purpuratus clone R3-1012G5, WO... 44 8.8 1 (AC168398) Strongylocentrotus purpuratus clone R3-4002K7, WO... 44 8.8 1 (AC168395) Strongylocentrotus purpuratus clone R3-4002M13, W... 44 8.8 1 (AC024012) Homo sapiens chromosome 10 clone RP11-170J4 map 1... 44 8.8 1 (AL133564) Homo sapiens mRNA; cDNA DKFZp434J186 (from clone ... 44 8.8 1 (AZ537213) AST-2P02762 Genetrap PC-3 Human Prostatic Carcino... 44 8.8 1 (AQ989508) Rfc00058 Photorhabdus luminescens strain W14 M13 ... 44 8.8 1 (ER463648) 1092963910729 Global-Ocean-Sampling_GS-35-01-01-1... 44 8.8 1 (ER462472) 1092963903049 Global-Ocean-Sampling_GS-35-01-01-1... 44 8.8 1 (EK253087) 1095460289178 Global-Ocean-Sampling_GS-31-01-01-1... 44 8.8 1 (EK014798) 1092955225676 Global-Ocean-Sampling_GS-31-01-01-1... 44 8.8 1 (DU189418) 1098574292299 CHORI-243 Ovis aries genomic clone ... 44 8.8 1 (CW908106) RPCI42_148M15.TJ RPCI-42 Bos taurus genomic clone... 44 8.8 1 (CT316275) Sus scrofa genomic clone CH242-385C11, genomic su... 44 8.8 1 (CC944993) BOIGH81TR BO_1.4_1.6_KB_nuc Brassica oleracea gen... 44 8.8 1 (CT675476) Danio rerio EST, clone ZF_mu_155j11 5'. 44 8.8 1 (BG206264) RST25707 Athersys RAGE Library Homo sapiens cDNA,... 44 8.8 1 (FF723408) XABT39702.rev Gateway compatible cien cDNA librar... 44 8.8 1 (EY182460) CBTI8633.g1_B23.ab1:P Triphysaria pusilla root ti... 44 8.8 1 (CP000891) Shewanella baltica OS195, complete genome. 44 8.8 1 (CP000563) Shewanella baltica OS155, complete genome. 44 8.8 1 (AM454300) Vitis vinifera contig VV78X108646.5, whole genome... 36 9.0 3 (AC214597) Populus trichocarpa clone POP037-E17, complete se... 36 9.0 3
>(BJ327993) Dictyostelium discoideum cDNA clone:dda22d14, 5' end, single read. Length = 570
Score = 442 bits (223), Expect(4) = 0.0 Identities = 223/223 (100%) Strand = Plus / Plus
Query: 1 ttaaaacaatgggtgcaagagttctatcattggatggtggaggagttagaggtatattac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ttaaaacaatgggtgcaagagttctatcattggatggtggaggagttagaggtatattac 60
Query: 61 attgcaatgttttacaagaaatacaaaagcaactatatggtattcatatttcaaaattgt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 attgcaatgttttacaagaaatacaaaagcaactatatggtattcatatttcaaaattgt 120
Query: 121 ttgatttaattgttggtacatctgcaggtggattagttgctttacaacttgcatcaactg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ttgatttaattgttggtacatctgcaggtggattagttgctttacaacttgcatcaactg 180
Query: 181 agaaaacactaccagaattagctatatcatttgacattttggc 223 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 agaaaacactaccagaattagctatatcatttgacattttggc 223
Score = 260 bits (131), Expect(4) = 0.0 Identities = 131/131 (100%) Strand = Plus / Plus
Query: 439 catacccatcaaaatgttcaaaacaaacacattttatatctggttcaaaagtaactgacg 498 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 439 catacccatcaaaatgttcaaaacaaacacattttatatctggttcaaaagtaactgacg 498
Query: 499 cagctgaagccacatcagctgcacctaaatatttcagaacatttgaatataatagtcgtc 558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 499 cagctgaagccacatcagctgcacctaaatatttcagaacatttgaatataatagtcgtc 558
Query: 559 aatttcttgat 569 ||||||||||| Sbjct: 559 aatttcttgat 569
Score = 216 bits (109), Expect(4) = 0.0 Identities = 112/112 (100%) Strand = Plus / Plus
Query: 319 ccattttaaatgacaaatttttatcaatttcatttccaaaaataagggcntgcagttgta 378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 319 ccattttaaatgacaaatttttatcaatttcatttccaaaaataagggcntgcagttgta 378
Query: 379 actgtaacacaagagtctggtgattttgatgagtgtatattttcaaattatc 430 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 379 actgtaacacaagagtctggtgattttgatgagtgtatattttcaaattatc 430
Score = 87.7 bits (44), Expect(4) = 0.0 Identities = 44/44 (100%) Strand = Plus / Plus
Query: 231 ggttatgaaagacctacattgggtattattacccatatatttgg 274 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 231 ggttatgaaagacctacattgggtattattacccatatatttgg 274
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 783,511,874 Number of extensions: 48830286 Number of successful extensions: 3931400 Number of sequences better than 10.0: 88 Length of query: 879 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 855 Effective length of database: 97,308,875,965 Effective search space: 83199088950075 Effective search space used: 83199088950075 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.24 |
Homology vs Protein |
Query= Contig-U08849-1 (Contig-U08849-1Q) /CSM_Contig/Contig-U08849-1Q.Seq.d (879 letters)
Database: nrp_A 3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
CU638743_858(CU638743|pid:none) Podospora anserina genomic DNA c... 62 3e-08 AC152499_11(AC152499|pid:none) Medicago truncatula clone mth2-56... 60 1e-07 AM482217_5(AM482217|pid:none) Vitis vinifera contig VV78X182164.... 59 2e-07 CP001102_1305(CP001102|pid:none) Candidatus Amoebophilus asiatic... 58 5e-07 CU633750_297(CU633750|pid:none) Cupriavidus taiwanensis str. LMG... 57 6e-07 CP000092_127(CP000092|pid:none) Ralstonia eutropha JMP134 megapl... 57 6e-07 CP000117_1617(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 57 8e-07 CP001291_4536(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 56 1e-06 CU207211_2078(CU207211|pid:none) Herminiimonas arsenicoxydans ch... 56 1e-06 CP000733_874(CP000733|pid:none) Coxiella burnetii Dugway 5J108-1... 56 2e-06 CP000390_546(CP000390|pid:none) Mesorhizobium sp. BNC1, complete... 55 2e-06 CP001326_256(CP001326|pid:none) Micromonas sp. RCC299 chromosome... 55 2e-06 AP007151_260(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 55 4e-06 CP000644_958(CP000644|pid:none) Aeromonas salmonicida subsp. sal... 55 4e-06 CP001020_677(CP001020|pid:none) Coxiella burnetii CbuK_Q154, com... 55 4e-06 EU959038_1(EU959038|pid:none) Zea mays clone 209512 patatin T5 p... 55 4e-06 CP000384_3160(CP000384|pid:none) Mycobacterium sp. MCS, complete... 53 1e-05 CP000874_1967(CP000874|pid:none) Rhizobium sp. NGR234 plasmid pN... 53 1e-05 CU458896_2069(CU458896|pid:none) Mycobacterium abscessus chromos... 53 1e-05 CP001037_1989(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 53 2e-05 AM910993_130(AM910993|pid:none) Plasmodium knowlesi strain H chr... 53 2e-05 AC084197_19(AC084197|pid:none) Caenorhabditis elegans cosmid Y73... 52 2e-05 CP001079_184(CP001079|pid:none) Anaplasma marginale str. Florida... 52 2e-05 AP006849_37(AP006849|pid:none) Oryza sativa Japonica Group genom... 52 3e-05 AP008215_855(AP008215|pid:none) Oryza sativa (japonica cultivar-... 52 3e-05 EU973191_1(EU973191|pid:none) Zea mays clone 394708 patatin T5 p... 52 3e-05 AM920439_312(AM920439|pid:none) Penicillium chrysogenum Wisconsi... 52 3e-05 AM920436_34(AM920436|pid:none) Penicillium chrysogenum Wisconsin... 52 3e-05 BT060501_1(BT060501|pid:none) Zea mays full-length cDNA clone ZM... 51 4e-05 AF061282_10(AF061282|pid:none) Sorghum bicolor 22 kDa kafirin cl... 51 6e-05 AM999887_271(AM999887|pid:none) Wolbachia endosymbiont of Culex ... 51 6e-05 AP007161_245(AP007161|pid:none) Aspergillus oryzae RIB40 genomic... 51 6e-05 CP000393_1525(CP000393|pid:none) Trichodesmium erythraeum IMS101... 51 6e-05 AY233333_28(AY233333|pid:none) Escherichia coli strain ECOR31 hi... 51 6e-05 AB478515_66(AB478515|pid:none) Wolbachia endosymbiont of Cadra c... 50 8e-05 CP000585_207(CP000585|pid:none) Ostreococcus lucimarinus CCE9901... 50 8e-05 EF085549_1(EF085549|pid:none) Picea sitchensis clone WS0276_K19 ... 50 8e-05 CP001391_572(CP001391|pid:none) Wolbachia sp. wRi, complete geno... 50 1e-04 AB478516_60(AB478516|pid:none) Wolbachia endosymbiont of Cadra c... 50 1e-04 AL161590_32(AL161590|pid:none) Arabidopsis thaliana DNA chromoso... 50 1e-04 AP007174_307(AP007174|pid:none) Aspergillus oryzae RIB40 genomic... 50 1e-04 CP000781_552(CP000781|pid:none) Xanthobacter autotrophicus Py2, ... 50 1e-04 AJ002596_1(AJ002596|pid:none) Arabidopsis thaliana mRNA for pata... 50 1e-04 AE017196_502(AE017196|pid:none) Wolbachia endosymbiont of Drosop... 50 1e-04 CP000107_182(CP000107|pid:none) Ehrlichia canis str. Jake, compl... 50 1e-04 AP003917_6(AP003917|pid:none) Oryza sativa Japonica Group genomi... 49 2e-04 CP000470_209(CP000470|pid:none) Shewanella sp. ANA-3 plasmid 1, ... 49 2e-04 CP001102_399(CP001102|pid:none) Candidatus Amoebophilus asiaticu... 49 2e-04 AM920428_7(AM920428|pid:none) Penicillium chrysogenum Wisconsin ... 49 2e-04 AY233333_31(AY233333|pid:none) Escherichia coli strain ECOR31 hi... 49 3e-04 AM999887_454(AM999887|pid:none) Wolbachia endosymbiont of Culex ... 49 3e-04 CP000469_1247(CP000469|pid:none) Shewanella sp. ANA-3, complete ... 49 3e-04 CT573075_3(CT573075|pid:none) Zebrafish DNA sequence from clone ... 49 3e-04 CP000542_4567(CP000542|pid:none) Verminephrobacter eiseniae EF01... 49 3e-04 CP000700_31(CP000700|pid:none) Sphingomonas wittichii RW1 plasmi... 49 3e-04 CP001325_513(CP001325|pid:none) Micromonas sp. RCC299 chromosome... 48 4e-04 AC005058_1(AC005058|pid:none) Homo sapiens BAC clone CTB-54D4 fr... 48 4e-04 CP000388_210(CP000388|pid:none) Pseudoalteromonas atlantica T6c,... 48 4e-04 AK168475_1(AK168475|pid:none) Mus musculus 17 days embryo kidney... 48 4e-04 CP001102_1033(CP001102|pid:none) Candidatus Amoebophilus asiatic... 48 4e-04 CU633901_266(CU633901|pid:none) Podospora anserina genomic DNA c... 48 4e-04 AK024335_1(AK024335|pid:none) Homo sapiens cDNA FLJ14273 fis, cl... 48 4e-04 AK291755_1(AK291755|pid:none) Homo sapiens cDNA FLJ77572 complet... 48 4e-04 AK004621_1(AK004621|pid:none) Mus musculus adult male lung cDNA,... 48 4e-04 (Q9NP80) RecName: Full=Calcium-independent phospholipase A2-gamm... 48 4e-04 AK108679_1(AK108679|pid:none) Oryza sativa Japonica Group cDNA c... 48 5e-04 EF066650_25(EF066650|pid:none) Sinorhizobium meliloti strain SM1... 48 5e-04 AP003962_8(AP003962|pid:none) Oryza sativa Japonica Group genomi... 48 5e-04 AE014296_1876(AE014296|pid:none) Drosophila melanogaster chromos... 48 5e-04 BT038613_1(BT038613|pid:none) Zea mays full-length cDNA clone ZM... 47 6e-04 AF158254_1(AF158254|pid:none) Nicotiana tabacum patatin-like pro... 47 6e-04 CP000738_1220(CP000738|pid:none) Sinorhizobium medicae WSM419, c... 47 6e-04 AP007171_777(AP007171|pid:none) Aspergillus oryzae RIB40 genomic... 47 6e-04 CP001327_520(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 47 8e-04 CP000847_867(CP000847|pid:none) Rickettsia akari str. Hartford, ... 47 8e-04 EU419878_1(EU419878|pid:none) Gallus gallus PNPLA8 mRNA, complet... 47 8e-04 AM435376_1(AM435376|pid:none) Vitis vinifera contig VV78X013204.... 47 8e-04 BT039730_1(BT039730|pid:none) Zea mays full-length cDNA clone ZM... 47 0.001 T03841(T03841) patatin homolog - common tobacco &U68484_1(U6848... 47 0.001 U68483_1(U68483|pid:none) Nicotiana tabacum patatin homolog gene... 47 0.001 AY809890_1(AY809890|pid:none) Schistosoma japonicum SJCHGC09449 ... 47 0.001 AJ617735_1(AJ617735|pid:none) Hevea brasiliensis partial mRNA fo... 46 0.001 CP001291_2614(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 46 0.001 (Q42502) RecName: Full=Patatin-2-Kuras 3; EC=3.1.1.-; F... 46 0.001 AF113546_1(AF113546|pid:none) Hevea brasiliensis latex protein a... 46 0.001 AJ223038_1(AJ223038|pid:none) Hevea brasiliensis mRNA for latex ... 46 0.001 CP000409_355(CP000409|pid:none) Rickettsia canadensis str. McKie... 46 0.001 AM436318_2(AM436318|pid:none) Vitis vinifera contig VV78X058876.... 46 0.001 BT066538_1(BT066538|pid:none) Zea mays full-length cDNA clone ZM... 46 0.001 (Q3YJT3) RecName: Full=Patatin-2-Kuras 1; EC=3.1.1.-; F... 46 0.001 AL954747_2520(AL954747|pid:none) Nitrosomonas europaea ATCC 1971... 46 0.002 AF158253_1(AF158253|pid:none) Nicotiana tabacum patatin-like pro... 46 0.002 CS163776_1(CS163776|pid:none) Sequence 7 from Patent WO200508309... 46 0.002 CP000053_360(CP000053|pid:none) Rickettsia felis URRWXCal2, comp... 46 0.002 AX146911_1(AX146911|pid:none) Sequence 11 from Patent WO0136468. 46 0.002 BC077558_1(BC077558|pid:none) Xenopus laevis MGC83523 protein, m... 46 0.002 (Q8LPW4) RecName: Full=Patatin-17; EC=3.1.1.-; Flags: P... 45 0.002 (Q3YJT2) RecName: Full=Patatin-2-Kuras 2; EC=3.1.1.-; F... 45 0.002 EU962920_1(EU962920|pid:none) Zea mays clone 246543 patatin clas... 45 0.002 (Q5XTS1) RecName: Full=Calcium-independent phospholipase A2-gamm... 45 0.002 CP000586_131(CP000586|pid:none) Ostreococcus lucimarinus CCE9901... 45 0.002 (Q2MY41) RecName: Full=Patatin-10; EC=3.1.1.-; Flags: P... 45 0.003 (Q2MY37) RecName: Full=Patatin-14; EC=3.1.1.-; Flags: P... 45 0.003 B26017(B26017)patatin T58 precursor - potato 45 0.003 S05593(S05593) patatin precursor (clone pPATB1) - potato (fragme... 45 0.003 CS163782_1(CS163782|pid:none) Sequence 13 from Patent WO20050830... 45 0.003 (Q3YJT0) RecName: Full=Patatin-2-Kuras 4; EC=3.1.1.-; F... 45 0.003 (P15477) RecName: Full=Patatin-B2; EC=3.1.1.-; Flags: P... 45 0.003 AM452376_1(AM452376|pid:none) Vitis vinifera contig VV78X078974.... 45 0.003 (Q2MY52) RecName: Full=Patatin group M-2; EC=3.1.1.-; F... 45 0.003 (P15476) RecName: Full=Patatin-B1; EC=3.1.1.-; Flags: P... 45 0.003 T22327(T22327) hypothetical protein F47A4.5 - Caenorhabditis ele... 45 0.003 BC067375_1(BC067375|pid:none) Danio rerio phospholipase A2, grou... 45 0.003 (P11768) RecName: Full=Patatin group M-1; EC=3.1.1.-; A... 45 0.003 (Q2MY45) RecName: Full=Patatin-06; EC=3.1.1.-; Flags: P... 45 0.003 BX571946_1(BX571946|pid:none) Zebrafish DNA sequence from clone ... 45 0.003 AF193067_1(AF193067|pid:none) Vigna unguiculata patatin-like pro... 45 0.004 CP000462_2851(CP000462|pid:none) Aeromonas hydrophila subsp. hyd... 45 0.004 EF145888_1(EF145888|pid:none) Populus trichocarpa clone WS0114_A... 44 0.005 CP001295_19(CP001295|pid:none) Cyanothece sp. PCC 7424 plasmid p... 44 0.005 AF498099_1(AF498099|pid:none) Solanum chacoense patatin storage ... 44 0.005 AX876424_1(AX876424|pid:none) Sequence 11329 from Patent EP10746... 44 0.007 AF102988_1(AF102988|pid:none) Homo sapiens Ca2+-independent phos... 44 0.007 AF117692_1(AF117692|pid:none) Homo sapiens calcium-independent p... 44 0.007 AF061282_14(AF061282|pid:none) Sorghum bicolor 22 kDa kafirin cl... 44 0.007 AL022322_4(AL022322|pid:none) Human DNA sequence from clone CTA-... 44 0.007 (O60733) RecName: Full=85 kDa calcium-independent phospholipase ... 44 0.007 T12503(T12503)hypothetical protein DKFZp434A102.1 - human (fragm... 44 0.007 BX294013_9(BX294013|pid:none) Neurospora crassa DNA linkage grou... 44 0.007 CP000884_748(CP000884|pid:none) Delftia acidovorans SPH-1, compl... 44 0.007 AF061282_12(AF061282|pid:none) Sorghum bicolor 22 kDa kafirin cl... 44 0.007 AM920458_1(AM920458|pid:none) Penicillium chrysogenum Wisconsin ... 44 0.007 AM920428_498(AM920428|pid:none) Penicillium chrysogenum Wisconsi... 44 0.007 AF102989_1(AF102989|pid:none) Homo sapiens Ca2+-independent phos... 44 0.007 AM920437_2668(AM920437|pid:none) Penicillium chrysogenum Wiscons... 44 0.007 AK153333_1(AK153333|pid:none) Mus musculus bone marrow macrophag... 44 0.009 (P97819) RecName: Full=85 kDa calcium-independent phospholipase ... 44 0.009 (P97570) RecName: Full=85 kDa calcium-independent phospholipase ... 44 0.009 BC052845_1(BC052845|pid:none) Mus musculus phospholipase A2, gro... 44 0.009 T33857(T33857)hypothetical protein D1037.5 - Caenorhabditis eleg... 44 0.009 EU973572_1(EU973572|pid:none) Zea mays clone 401130 unknown mRNA. 44 0.009 (Q2MY58) RecName: Full=Patatin group A-3; EC=3.1.1.-; F... 43 0.012 CP000685_3223(CP000685|pid:none) Flavobacterium johnsoniae UW101... 43 0.012 AM889285_2893(AM889285|pid:none) Gluconacetobacter diazotrophicu... 43 0.016 (Q2MY54) RecName: Full=Patatin group J-1; EC=3.1.1.-; F... 43 0.016 AM920457_1(AM920457|pid:none) Penicillium chrysogenum Wisconsin ... 43 0.016 (Q2MY60) RecName: Full=Patatin-02; EC=3.1.1.-; AltName:... 43 0.016 (Q41487) RecName: Full=Patatin-16; EC=3.1.1.-; Flags: P... 43 0.016 AL138648_5(AL138648|pid:none) Arabidopsis thaliana DNA chromosom... 42 0.021 (Q2MY56) RecName: Full=Patatin group D-2; EC=3.1.1.-; F... 42 0.021 AC006618_1(AC006618|pid:none) Caenorhabditis elegans cosmid C45B... 42 0.021 CP000615_1039(CP000615|pid:none) Burkholderia vietnamiensis G4 c... 42 0.027 CP000875_2528(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 42 0.027 CP000571_2308(CP000571|pid:none) Burkholderia pseudomallei 668 c... 42 0.027 AC097279_16(AC097279|pid:none) Oryza sativa chromosome 3 BAC OSJ... 42 0.027 CP000085_722(CP000085|pid:none) Burkholderia thailandensis E264 ... 42 0.035 CP000379_965(CP000379|pid:none) Burkholderia cenocepacia AU 1054... 42 0.035 Z68299_8(Z68299|pid:none) Caenorhabditis elegans Cosmid T04B2, c... 42 0.035 T24442(T24442;T26042)hypothetical protein T04B2.5 - Caenorhabdit... 42 0.035 CP000909_3076(CP000909|pid:none) Chloroflexus aurantiacus J-10-f... 42 0.035 AJ620477_24(AJ620477|pid:none) Angiococcus disciformis partial O... 41 0.060 AJ620477_25(AJ620477|pid:none) Angiococcus disciformis partial O... 41 0.060 CS131067_1(CS131067|pid:none) Sequence 122 from Patent WO2005066... 40 0.078 CP001337_174(CP001337|pid:none) Chloroflexus aggregans DSM 9485,... 40 0.078 CU633749_1897(CU633749|pid:none) Cupriavidus taiwanensis str. LM... 40 0.078 CS131065_1(CS131065|pid:none) Sequence 120 from Patent WO2005066... 40 0.078 AM260479_2344(AM260479|pid:none) Ralstonia eutropha H16 chromoso... 40 0.10 EF413636_1(EF413636|pid:none) Uncultured organism clone PLP pata... 40 0.10 AP007163_14(AP007163|pid:none) Aspergillus oryzae RIB40 genomic ... 40 0.10 CP000813_1380(CP000813|pid:none) Bacillus pumilus SAFR-032, comp... 40 0.10 CP000849_501(CP000849|pid:none) Rickettsia bellii OSU 85-389, co... 40 0.13 AE016825_441(AE016825|pid:none) Chromobacterium violaceum ATCC 1... 39 0.17 (Q2MY40) RecName: Full=Patatin-11; EC=3.1.1.-; Flags: P... 39 0.17 CP000090_2106(CP000090|pid:none) Ralstonia eutropha JMP134 chrom... 39 0.23 AM180355_2237(AM180355|pid:none) Clostridium difficile 630 compl... 39 0.23 BX908798_1293(BX908798|pid:none) Parachlamydia-related symbiont ... 39 0.30 CP001227_452(CP001227|pid:none) Rickettsia peacockii str. Rustic... 39 0.30 CP000155_5836(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 38 0.39 CP000683_672(CP000683|pid:none) Rickettsia massiliae MTU5, compl... 38 0.51 CP000943_4350(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 38 0.51 AM181176_4372(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 38 0.51 CP000282_1884(CP000282|pid:none) Saccharophagus degradans 2-40, ... 37 0.66 (Q04958) RecName: Full=Lysophospholipase NTE1; EC=3.1.1... 37 1.1 CP000644_387(CP000644|pid:none) Aeromonas salmonicida subsp. sal... 37 1.1 CR382132_423(CR382132|pid:none) Yarrowia lipolytica strain CLIB1... 37 1.1 CP000076_1555(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 37 1.1 CP000094_1470(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 37 1.1 CR378679_24(CR378679|pid:none) Photobacterium profundum SS9 chro... 37 1.1 CP000934_1696(CP000934|pid:none) Cellvibrio japonicus Ueda107, c... 36 1.5 CP000790_1675(CP000790|pid:none) Vibrio harveyi ATCC BAA-1116 ch... 36 1.5 AP009153_3381(AP009153|pid:none) Gemmatimonas aurantiaca T-27 DN... 36 1.5 CP000316_3038(CP000316|pid:none) Polaromonas sp. JS666, complete... 36 1.9 CR555306_2294(CR555306|pid:none) Azoarcus sp. EbN1 complete geno... 36 1.9 CP000270_2776(CP000270|pid:none) Burkholderia xenovorans LB400 c... 35 2.5 BT043146_1(BT043146|pid:none) Zea mays full-length cDNA clone ZM... 35 2.5 BT000869_1(BT000869|pid:none) Arabidopsis thaliana clone C103467... 35 2.5 AE016825_4374(AE016825|pid:none) Chromobacterium violaceum ATCC ... 35 2.5 FM209186_1726(FM209186|pid:none) Pseudomonas aeruginosa LESB58 c... 35 2.5 CP000813_1621(CP000813|pid:none) Bacillus pumilus SAFR-032, comp... 35 2.5 CP000141_2035(CP000141|pid:none) Carboxydothermus hydrogenoforma... 35 2.5 AE004091_3339(AE004091|pid:none) Pseudomonas aeruginosa PAO1, co... 35 2.5 AE017344_410(AE017344|pid:none) Cryptococcus neoformans var. neo... 35 2.5 (Q756Z0) RecName: Full=Lysophospholipase NTE1; EC=3.1.1... 35 3.3 CP000514_496(CP000514|pid:none) Marinobacter aquaeolei VT8, comp... 35 3.3 CT573326_3630(CT573326|pid:none) Pseudomonas entomophila str. L4... 35 3.3 CP000926_3994(CP000926|pid:none) Pseudomonas putida GB-1, comple... 35 3.3 CP000076_4318(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 35 3.3 CP000359_1069(CP000359|pid:none) Deinococcus geothermalis DSM 11... 35 3.3 CP000875_1140(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 35 3.3 CP000868_1212(CP000868|pid:none) Burkholderia multivorans ATCC 1... 35 3.3 AE017194_4865(AE017194|pid:none) Bacillus cereus ATCC 10987, com... 35 4.3 CP000269_2248(CP000269|pid:none) Janthinobacterium sp. Marseille... 35 4.3 FB905949_1(FB905949|pid:none) Sequence 125222 from Patent WO2008... 35 4.3 AP006618_995(AP006618|pid:none) Nocardia farcinica IFM 10152 DNA... 35 4.3 AP003728_4(AP003728|pid:none) Oryza sativa Japonica Group genomi... 35 4.3 FB905947_1(FB905947|pid:none) Sequence 125220 from Patent WO2008... 35 4.3 FP236842_659(FP236842|pid:none) Erwinia pyrifoliae strain Ep1/96... 35 4.3 AM454315_1(AM454315|pid:none) Vitis vinifera contig VV78X020860.... 35 4.3 AE015928_1782(AE015928|pid:none) Bacteroides thetaiotaomicron VP... 34 5.6 CP000901_764(CP000901|pid:none) Yersinia pestis Angola, complete... 34 5.6 AC004697_13(AC004697|pid:none) Arabidopsis thaliana chromosome 2... 34 5.6 AP008209_944(AP008209|pid:none) Oryza sativa (japonica cultivar-... 34 5.6 BX842627_19(BX842627|pid:none) Neurospora crassa DNA linkage gro... 34 5.6 CP000949_3779(CP000949|pid:none) Pseudomonas putida W619, comple... 34 5.6 CU633895_205(CU633895|pid:none) Podospora anserina genomic DNA c... 34 5.6 CP001052_2439(CP001052|pid:none) Burkholderia phytofirmans PsJN ... 34 5.6 CR543861_721(CR543861|pid:none) Acinetobacter sp. ADP1 complete ... 34 5.6 CP000094_1696(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 34 5.6 CP000267_353(CP000267|pid:none) Rhodoferax ferrireducens T118, c... 34 5.6 BX936398_578(BX936398|pid:none) Yersinia pseudotuberculosis IP32... 34 5.6 CP000305_303(CP000305|pid:none) Yersinia pestis Nepal516, comple... 34 5.6 CP000304_4059(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 34 5.6 CP000529_1598(CP000529|pid:none) Polaromonas naphthalenivorans C... 34 5.6 CP000950_3583(CP000950|pid:none) Yersinia pseudotuberculosis YPI... 34 5.6 CP000720_3452(CP000720|pid:none) Yersinia pseudotuberculosis IP ... 34 5.6 CP001359_2134(CP001359|pid:none) Anaeromyxobacter dehalogenans 2... 34 7.3 CP001131_2048(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 34 7.3 CP000251_2388(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 34 7.3 CP001359_1545(CP001359|pid:none) Anaeromyxobacter dehalogenans 2... 34 7.3 FB905945_1(FB905945|pid:none) Sequence 125218 from Patent WO2008... 34 7.3 CP001503_1180(CP001503|pid:none) Burkholderia glumae BGR1 chromo... 34 7.3 AK229196_1(AK229196|pid:none) Arabidopsis thaliana mRNA for hypo... 34 7.3 CP000471_2973(CP000471|pid:none) Magnetococcus sp. MC-1, complet... 33 9.6 (Q6BQK9) RecName: Full=Lysophospholipase NTE1; EC=3.1.1... 33 9.6 FN392320_494(FN392320|pid:none) Pichia pastoris GS115 chromosome... 33 9.6 FB905965_1(FB905965|pid:none) Sequence 125238 from Patent WO2008... 33 9.6 CP000655_1225(CP000655|pid:none) Polynucleobacter necessarius su... 33 9.6 AL034559_4(AL034559|pid:none) Plasmodium falciparum MAL3P7, comp... 33 9.6
>CU638743_858(CU638743|pid:none) Podospora anserina genomic DNA chromosome 3, supercontig 2. Length = 1349
Score = 62.0 bits (149), Expect = 3e-08 Identities = 35/78 (44%), Positives = 54/78 (69%), Gaps = 4/78 (5%) Frame = +3
Query: 12 GARVLSLDGGGVRGILHCNVLQEIQKQ--LYGIHISKLFDLIVGTSAGGLVALQLASTEK 185 G R+L+LDGGGVRGI+ ++Q ++++ L + ++++FDLIVGTS GG+VAL L K Sbjct: 785 GVRILTLDGGGVRGIVELALVQALEQEIGLTNVRLAEMFDLIVGTSTGGIVALALTFPGK 844
Query: 186 TLPE--LAISFDILAKKG 233 LP A++ LA++G Sbjct: 845 -LPSDPAAVASSPLARRG 861
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3204285 Number of Hits to DB: 1,040,832,055 Number of extensions: 18054865 Number of successful extensions: 44477 Number of sequences better than 10.0: 248 Number of HSP's gapped: 44271 Number of HSP's successfully gapped: 251 Length of query: 293 Length of database: 1,040,966,779 Length adjustment: 127 Effective length of query: 166 Effective length of database: 634,022,584 Effective search space: 105247748944 Effective search space used: 105247748944 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
1 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |