Contig-U00318-1 |
Contig ID |
Contig-U00318-1 |
Contig update |
2001. 8.29 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1350 |
Chromosome number (1..6, M) |
1 |
Chromosome length |
4919822 |
Start point |
855839 |
End point |
854486 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
2 |
Number of EST |
4 |
Link to clone list |
U00318 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.21 |
Homology vs CSM-cDNA |
|
dna update |
2009. 4.15 |
Homology vs DNA |
Query= Contig-U00318-1 (Contig-U00318-1Q) /CSM_Contig/Contig-U00318-1Q.Seq.d (1360 letters)
Database: ddbj_A 102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ428904) Dictyostelium discoideum cDNA clone:ddv1l17, 3' e... 678 0.0 3 (BJ340343) Dictyostelium discoideum cDNA clone:dda12n14, 3' ... 444 0.0 3 (BJ410736) Dictyostelium discoideum cDNA clone:ddv1l17, 5' e... 541 e-160 3 (BJ323876) Dictyostelium discoideum cDNA clone:dda12n14, 5' ... 541 e-160 3 (FF489228) G708P5173RB7.T0 Acorn worm normalized gastrula pE... 62 5e-06 2 (AK017063) Mus musculus adult male testis cDNA, RIKEN full-l... 62 6e-05 2 (BC025555) Mus musculus pseudouridylate synthase 10, mRNA (c... 62 6e-05 1 (AK145055) Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDN... 62 6e-05 1 (AK088562) Mus musculus 2 days neonate thymus thymic cells c... 62 6e-05 1 (AK029866) Mus musculus adult male testis cDNA, RIKEN full-l... 62 6e-05 1 (DT931618) S29-20027 Hematopoietic stem cells Mus musculus c... 62 6e-05 1 (CF913455) A0648G03-5 NIA Mouse Hematopoietic Stem Cell (Lin... 62 6e-05 1 (CD773011) AGENCOURT_14719375 NIH_MGC_190 Mus musculus cDNA ... 62 6e-05 1 (AI592509) ms91e05.y1 Soares mouse 3NbMS Mus musculus cDNA c... 62 6e-05 1 (BG297100) 602395081F1 NIH_MGC_94 Mus musculus cDNA clone IM... 62 6e-05 1 (BG079228) H3037D03-5 NIA Mouse 15K cDNA Clone Set Mus muscu... 62 6e-05 1 (BF141761) 601787627F1 NCI_CGAP_Lu30 Mus musculus cDNA clone... 62 6e-05 1 (AA175471) ms91e05.r1 Soares mouse 3NbMS Mus musculus cDNA c... 62 6e-05 1 (EH012583) USDA-FP_185469 Lysiphlebus testaceipes adult whol... 50 3e-04 2 (EH180952) LB01754.CR_N22 GC_BGC-17 Bos taurus cDNA clone IM... 58 0.001 1 (DY507738) sh3P0007E05_F.ab1 adult sheep fracture callus 10d... 58 0.001 1 (DW142234) CLSZ1458.b1_D06.ab1 CLS(XYZ) lettuce sativa Lactu... 58 0.001 1 (CK962792) 4077272 BARC 9BOV Bos taurus cDNA clone 9BOV11_M0... 58 0.001 1 (GH536192) CCUH3540.g1 CCUH Peromyscus maniculatus bairdii B... 58 0.001 1 (AM661143) Entamoeba moshkovskii FIC GSS, clone mosh106c11.p1k. 44 0.005 2 (AK028368) Mus musculus 18 days pregnant adult female placen... 54 0.015 1 (AZ680519) ENTJH19TF Entamoeba histolytica Sheared DNA Entam... 46 0.023 2 (BH134433) ENTNP83TF Entamoeba histolytica Sheared DNA Entam... 46 0.023 2 (BH139128) ENTOA69TR Entamoeba histolytica Sheared DNA Entam... 46 0.023 2 (BH132051) ENTNS68TF Entamoeba histolytica Sheared DNA Entam... 46 0.024 2 (BC143480) Homo sapiens cDNA clone IMAGE:9051988. 42 0.040 2 (BC101706) Homo sapiens pseudouridylate synthase 10, mRNA (c... 42 0.042 2 (BC101680) Homo sapiens pseudouridylate synthase 10, mRNA (c... 42 0.042 2 (AK291729) Homo sapiens cDNA FLJ77651 complete cds. 42 0.044 2 (BD286720) Novel full length cDNA. 42 0.050 2 (AX714497) Sequence 1181 from Patent EP1293569. 42 0.050 2 (AR787349) Sequence 1181 from patent US 6979557. 42 0.050 2 (AK056874) Homo sapiens cDNA FLJ32312 fis, clone PROST2003210. 42 0.050 2 (BC072319) Xenopus laevis MGC83083 protein, mRNA (cDNA clone... 52 0.058 1 (GO216047) CAGB26125.fwd CAGB Alvinella pompejana Normalized... 52 0.058 1 (GO216046) CAGB26125.rev CAGB Alvinella pompejana Normalized... 52 0.058 1 (AL832208) Homo sapiens mRNA; cDNA DKFZp686K122 (from clone ... 42 0.14 2 (EK338104) 1095467050059 Global-Ocean-Sampling_GS-31-01-01-1... 50 0.23 1 (EJ531160) 1092955229051 Global-Ocean-Sampling_GS-29-01-01-1... 50 0.23 1 (ES400816) MUT13-B20.y1d-s SHGC-MUT Mytilus californianus cD... 50 0.23 1 (EH015877) USDA-FP_188434 Lysiphlebus testaceipes adult whol... 50 0.23 1 (CO990733) UMC-pd3ov3-007-a02 Oviduct gilt D3 of estrous cyc... 50 0.23 1 (CJ404789) Molgula tectiformis cDNA, gonad clone:mtgd021h22,... 50 0.23 1 (C77560) Mus musculus 3.5-dpc blastocyst cDNA 3'-end sequenc... 50 0.23 1 (BI403774) MI-P-CP1-nwq-e-10-0-UI.s1 MI-P-CP1 Sus scrofa cDN... 50 0.23 1 (EW539351) rret12_o17.y1 ret Sus scrofa cDNA 5', mRNA sequence. 50 0.23 1 (EI940593) VUH2-71D13TV VUUBBa (VUH2) Vigna unguiculata geno... 42 0.75 3 (BC108709) Homo sapiens cDNA clone IMAGE:6161308. 48 0.90 1 (AL513502) Homo sapiens chromosome 9 BAC RP11-123j20. 48 0.90 1 (AL450004) Homo sapiens chromosome 9 BAC RP11-520K3. 48 0.90 1 (AC069025) Homo sapiens chromosome 10 clone RP11-526G5, comp... 48 0.90 1 (AL161933) Human DNA sequence *** SEQUENCING CANCELLED *** f... 48 0.90 1 (ER416593) 1092963673906 Global-Ocean-Sampling_GS-35-01-01-1... 48 0.90 1 (EJ410346) 1093012134487 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.90 1 (DU838988) MUGQ_CH252P015K18T7_GL294_069 CHORI-252 Vervet Mo... 48 0.90 1 (CV517459) 0089P0002Z_H11_SP6 Mimulus guttatus library 2 Mim... 48 0.90 1 (CV517394) 0089P0002Z_H11_T7 Mimulus guttatus library 2 Mimu... 48 0.90 1 (CT863034) Oryza sativa Indica Group EST sequence:OSIGCRA212... 48 0.90 1 (EW966883) LS_11_C22_T7 Headlice composite library with all ... 48 0.90 1 (DU879196) 282945 Tomato HindIII BAC Library Solanum lycoper... 40 1.00 3 (AC136592) Homo sapiens chromosome 5 clone RP11-1021G2, WORK... 40 3.1 2 (BV457623) qfj67b05.b1 Clint Pan troglodytes verus STS genom... 46 3.6 1 (AC190171) Pan troglodytes BAC clone CH251-522D1 from chromo... 46 3.6 1 (AC151913) Pan troglodytes chromosome X clone RP43-057B02 ma... 46 3.6 1 (AC151912) Pan troglodytes chromosome X clone PTB-093M21 map... 46 3.6 1 (AL034401) Human DNA sequence from clone RP1-212J10 on chrom... 46 3.6 1 (AC162207) Bos taurus clone CH240-114N15, WORKING DRAFT SEQU... 46 3.6 1 (AC126313) Rattus norvegicus clone CH230-426G4, WORKING DRAF... 46 3.6 1 (AC120228) Rattus norvegicus clone CH230-113L21, WORKING DRA... 46 3.6 1 (AC106065) Rattus norvegicus clone CH230-18J12, WORKING DRAF... 46 3.6 1 (AC025859) Homo sapiens chromosome X clone RP11-614F19 map X... 46 3.6 1 (CT961044) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.6 1 (AP010607) Lotus japonicus genomic DNA, chromosome 3, clone:... 46 3.6 1 (AC224832) Bos taurus clone CH240-474O22, WORKING DRAFT SEQU... 46 3.6 1 (AC165705) Bos taurus clone CH240-166D9, WORKING DRAFT SEQUE... 46 3.6 1 (AQ842172) T134466 Soybean RFLP probe Glycine max genomic cl... 46 3.6 1 (AQ841467) T136840b shotgun sub-library of BAC clone 14E22 M... 46 3.6 1 (AQ841465) T136835b shotgun sub-library of BAC clone 14E22 M... 46 3.6 1 (AQ841451) T136801b shotgun sub-library of BAC clone 14E22 M... 46 3.6 1 (AQ131718) HS_3041_B2_G07_MF CIT Approved Human Genomic Sper... 46 3.6 1 (AG093362) Pan troglodytes DNA, clone: PTB-093M21.R. 46 3.6 1 (AU022571) Mus musculus unfertilized egg cDNA 3'-end sequenc... 46 3.6 1 (AU022024) Mus musculus unfertilized egg cDNA 3'-end sequenc... 46 3.6 1 (AU022023) Mus musculus unfertilized egg cDNA 3'-end sequenc... 46 3.6 1 (AU022021) Mus musculus unfertilized egg cDNA 3'-end sequenc... 46 3.6 1 (AU022020) Mus musculus unfertilized egg cDNA 3'-end sequenc... 46 3.6 1 (CV856846) gonad_EST04322 Embryonic gonad cDNA Library Gallu... 46 3.6 1 (CV855049) gonad_EST02525 Embryonic gonad cDNA Library Gallu... 46 3.6 1 (BU347950) 604170248F1 CSEQCHN68 Gallus gallus cDNA clone Ch... 46 3.6 1 (FE358410) CBNN17341.rev CBNN_Daphnia_pulex_Chosen_One_Libra... 46 3.6 1 (FC698281) CAXX6968.rev CAXX Lottia gigantea from male gonad... 46 3.6 1 (CP000806) Cyanothece sp. ATCC 51142 circular chromosome, co... 46 3.6 1 (EJ302680) 1095390046647 Global-Ocean-Sampling_GS-27-01-01-1... 44 4.2 2 (ER504614) 1093015416494 Global-Ocean-Sampling_GS-35-01-01-1... 40 4.3 2 (CU469464) Candidatus Phytoplasma mali strain AT complete ch... 34 6.1 2 (AC106916) Rattus norvegicus clone CH230-59I17, *** SEQUENCI... 34 6.3 2 (AL355513) Human DNA sequence *** SEQUENCING CANCELLED *** f... 36 6.4 5 (AC127121) Rattus norvegicus clone CH230-99O3, *** SEQUENCIN... 34 6.4 2 (CU463895) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 6.5 2 (AY691414) Vryburgia amaryllidis cytochrome b (cytb) gene, p... 36 8.0 3 (AL360002) Human DNA sequence from clone RP11-192B4 on chrom... 42 8.7 3
>(BJ428904) Dictyostelium discoideum cDNA clone:ddv1l17, 3' end, single read. Length = 640
Score = 678 bits (342), Expect(3) = 0.0 Identities = 345/345 (100%) Strand = Plus / Minus
Query: 654 ctgnaaagtataataaattcgtcagagatttaagtcagacaccatgggagtatgacgact 713 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 639 ctgnaaagtataataaattcgtcagagatttaagtcagacaccatgggagtatgacgact 580
Query: 714 cctcagttcaggatttaatatgtaaagatattcaagaaacgtttaaagcagattccatcc 773 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 579 cctcagttcaggatttaatatgtaaagatattcaagaaacgtttaaagcagattccatcc 520
Query: 774 tattcaccacatccggtagggaggacatcgatgttagaatgcttggcgatggcagaccct 833 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 519 tattcaccacatccggtagggaggacatcgatgttagaatgcttggcgatggcagaccct 460
Query: 834 tttatattgagattgtgaaccctcacagaatcttcttcaagaatcaagactttgagaaac 893 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 459 tttatattgagattgtgaaccctcacagaatcttcttcaagaatcaagactttgagaaac 400
Query: 894 tagaatcctccatcaacgactccacaaagaagatcaaagtctcaaatttacaattaatca 953 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 399 tagaatcctccatcaacgactccacaaagaagatcaaagtctcaaatttacaattaatca 340
Query: 954 caaagaaagaaaccaccatcatcaaagactctggtggcacaaaac 998 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 339 caaagaaagaaaccaccatcatcaaagactctggtggcacaaaac 295
Score = 280 bits (141), Expect(3) = 0.0 Identities = 143/144 (99%) Strand = Plus / Minus
Query: 1149 tctcaaaattacatgcaacatttatcagtcctcatttctttatgttggatatcattgacg 1208 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 144 tctcaaaattacatgcaacatttatcagtcctcatttctttatgttggatatcattgacg 85
Query: 1209 ctcaagctggaacctacattaaagaatttgttcatggtgatttaggtagaactttaccaa 1268 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 84 ctcaagctggaacctacattaaagaatttgttcatggtnatttaggtagaactttaccaa 25
Query: 1269 acattggtttattattaggaaatt 1292 |||||||||||||||||||||||| Sbjct: 24 acattggtttattattaggaaatt 1
Score = 270 bits (136), Expect(3) = 0.0 Identities = 136/136 (100%) Strand = Plus / Minus
Query: 1006 ttatcgttgtttcatttggacaagtagaattttacaaccttcagatcttgatacactcaa 1065 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 287 ttatcgttgtttcatttggacaagtagaattttacaaccttcagatcttgatacactcaa 228
Query: 1066 taatttaaaagatatacaacttcatcaaaacactcccattagagtattacatcgtagatc 1125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 227 taatttaaaagatatacaacttcatcaaaacactcccattagagtattacatcgtagatc 168
Query: 1126 tctaatgattagaaat 1141 |||||||||||||||| Sbjct: 167 tctaatgattagaaat 152
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 102105510 Number of Hits to DB: 1,330,295,936 Number of extensions: 85857219 Number of successful extensions: 6779657 Number of sequences better than 10.0: 107 Length of query: 1360 Length of database: 101,790,757,118 Length adjustment: 24 Effective length of query: 1336 Effective length of database: 99,340,224,878 Effective search space: 132718540437008 Effective search space used: 132718540437008 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.10 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
1 |
AH (FL, L) |
0 |
AF (FL, S) |
1 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |