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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U08836-1
Contig ID Contig-U08836-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U08836-1 (Contig-U08836-1Q) /CSM_Contig/Contig-U08836-1Q.Seq.d
TTGGCCTACTGGAATTTCACAATAAAAATTTTTCTGGAGAATATCTAGCA
TTAAAGTACAAATATTTAAAGTATTACTAAAATATAATAATAATAATAAG
AATACAATATAATAATAACAATAATAATAATAATAATAATAAGAGTATAA
TAAAAAAAAA----------AAAGAGAAATTAAGAATTTGTAAAGAAGGT
TATGATTCATTACATGAAGAATTATTAAATGATTTACCAAGATTAAATGA
AGATAAATTAATTTTTATAGATTATTTAGTTGCTTCTTTAATAAAATATC
AATCAGAATTTCATAAAAAAGTATCATATGAATGGAGTCCATTACCATCA
CTTACAAAACATGTTGATGAATATTCAGGTAGAGATCATCAACCAGTAAT
TACAAGTGTTGAAAGATCAGCAGCATCAATTAATTTAAGATCAGATCCAG
TATTTAAGAGTAATGCGTCAATAAAGATGAAACCAGGTGCACAAGATCAA
CAACAATATTCAACTGTAGATAAAGATATCCATCAATCACCAAATCCTTC
AAATTTAAATTTACAAAAATCAACACCAAATCCATATGGTGGTGCTTCTG
CTCCACCACCTTTATATGGTGGTGGTGGCAGTTCAACTGCCACAGCATTA
TATGATTTCACTGGTGTTGATAGTTCNNAATTATCATTTAGAGCTGGTGA
TATCATTACAATTCATAAATCAGAAGGNAAGGTGGAAGGTA
Gap gap included
Contig length 731
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 2789620
End point 2788943
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U08836
List of clone(s) 

est1=AFK373F,1,161
est2=AFK373Z,162,733
Translated Amino Acid sequence 
gllefhnknfsgeylalkykylkyy*NIIIIIRIQYNNNNNNNNNNKSIIKK---

---KEKLRICKEGYDSLHEELLNDLPRLNEDKLIFIDYLVASLIKYQSEFHKKVSYEWSP
LPSLTKHVDEYSGRDHQPVITSVERSAASINLRSDPVFKSNASIKMKPGAQDQQQYSTVD
KDIHQSPNPSNLNLQKSTPNPYGGASAPPPLYGGGGSSTATALYDFTGVDSSXLSFRAGD
IITIHKSEGKVEG
Translated Amino Acid sequence (All Frames) 
Frame A:
laywnftikifleni*h*stni*sitki*****eyniiitiiiiiiirv**kk---

---KEKLRICKEGYDSLHEELLNDLPRLNEDKLIFIDYLVASLIKYQSEFHKKVSYEWSP
LPSLTKHVDEYSGRDHQPVITSVERSAASINLRSDPVFKSNASIKMKPGAQDQQQYSTVD
KDIHQSPNPSNLNLQKSTPNPYGGASAPPPLYGGGGSSTATALYDFTGVDSSXLSFRAGD
IITIHKSEGKVEG

Frame B:
wptgisq*kffwrissikvqifkvllkynnnnknti***q*******eynkkk---

---krn*efvkkvmihymkny*miyqd*mkin*fl*ii*lll**ninqnfikkyhmngvh
yhhlqnmlmniqveiinq*lqvlkdqqhqli*dqiqylrvmrq*r*nqvhkinnniql*i
kisinhqilqi*iyknqhqihmvvlllhhlymvvvavqlpqhymislvlivxnyhlelvi
slqfinqkxrwkv

Frame C:
gllefhnknfsgeylalkykylkyy*NIIIIIRIQYNNNNNNNNNNKSIIKK---

---reiknl*rrl*fit*riik*ftkik*r*infyrlfscffnkisiris*ksii*mesi
tityktc**ifr*rsstsnykc*kissin*fkirssi*e*cvnkdetrctrsttifncr*
rypsitksfkfkftkintksiwwcfcsttfiwwwwqfnchsii*fhwc**fxiii*sw*y
hyns*irrxggr
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U08836-1 (Contig-U08836-1Q)
/CSM_Contig/Contig-U08836-1Q.Seq.d
         (741 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U08836-1 (Contig-U08836-1Q) /CSM_Contig/Conti...  1114  0.0
Contig-U09253-1 (Contig-U09253-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U10972-1 (Contig-U10972-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U07886-1 (Contig-U07886-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U02945-1 (Contig-U02945-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U13875-1 (Contig-U13875-1Q) /CSM_Contig/Conti...    36  0.052
Contig-U13692-1 (Contig-U13692-1Q) /CSM_Contig/Conti...    36  0.052
Contig-U12945-1 (Contig-U12945-1Q) /CSM_Contig/Conti...    36  0.052
Contig-U11521-1 (Contig-U11521-1Q) /CSM_Contig/Conti...    36  0.052
Contig-U10975-1 (Contig-U10975-1Q) /CSM_Contig/Conti...    36  0.052

>Contig-U08836-1 (Contig-U08836-1Q) /CSM_Contig/Contig-U08836-1Q.Seq.d
          Length = 741

 Score = 1114 bits (562), Expect = 0.0
 Identities = 571/571 (100%)
 Strand = Plus / Plus

                                                                       
Query: 171 aaagagaaattaagaatttgtaaagaaggttatgattcattacatgaagaattattaaat 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 aaagagaaattaagaatttgtaaagaaggttatgattcattacatgaagaattattaaat 230

                                                                       
Query: 231 gatttaccaagattaaatgaagataaattaatttttatagattatttagttgcttcttta 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 gatttaccaagattaaatgaagataaattaatttttatagattatttagttgcttcttta 290

                                                                       
Query: 291 ataaaatatcaatcagaatttcataaaaaagtatcatatgaatggagtccattaccatca 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ataaaatatcaatcagaatttcataaaaaagtatcatatgaatggagtccattaccatca 350

                                                                       
Query: 351 cttacaaaacatgttgatgaatattcaggtagagatcatcaaccagtaattacaagtgtt 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 cttacaaaacatgttgatgaatattcaggtagagatcatcaaccagtaattacaagtgtt 410

                                                                       
Query: 411 gaaagatcagcagcatcaattaatttaagatcagatccagtatttaagagtaatgcgtca 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gaaagatcagcagcatcaattaatttaagatcagatccagtatttaagagtaatgcgtca 470

                                                                       
Query: 471 ataaagatgaaaccaggtgcacaagatcaacaacaatattcaactgtagataaagatatc 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ataaagatgaaaccaggtgcacaagatcaacaacaatattcaactgtagataaagatatc 530

                                                                       
Query: 531 catcaatcaccaaatccttcaaatttaaatttacaaaaatcaacaccaaatccatatggt 590
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 catcaatcaccaaatccttcaaatttaaatttacaaaaatcaacaccaaatccatatggt 590

                                                                       
Query: 591 ggtgcttctgctccaccacctttatatggtggtggtggcagttcaactgccacagcatta 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ggtgcttctgctccaccacctttatatggtggtggtggcagttcaactgccacagcatta 650

                                                                       
Query: 651 tatgatttcactggtgttgatagttcnnaattatcatttagagctggtgatatcattaca 710
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tatgatttcactggtgttgatagttcnnaattatcatttagagctggtgatatcattaca 710

                                          
Query: 711 attcataaatcagaaggnaaggtggaaggta 741
           |||||||||||||||||||||||||||||||
Sbjct: 711 attcataaatcagaaggnaaggtggaaggta 741


 Score =  153 bits (77), Expect = 3e-37
 Identities = 77/77 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttggcctactggaatttcacaataaaaatttttctggagaatatctagcattaaagtaca 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ttggcctactggaatttcacaataaaaatttttctggagaatatctagcattaaagtaca 60

                           
Query: 61 aatatttaaagtattac 77
          |||||||||||||||||
Sbjct: 61 aatatttaaagtattac 77


>Contig-U09253-1 (Contig-U09253-1Q) /CSM_Contig/Contig-U09253-1Q.Seq.d
          Length = 572

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 693 gctggtgatatcattacaat 712
           ||||||||||||||||||||
Sbjct: 350 gctggtgatatcattacaat 369


>Contig-U10972-1 (Contig-U10972-1Q) /CSM_Contig/Contig-U10972-1Q.Seq.d
          Length = 2216

 Score = 38.2 bits (19), Expect = 0.013
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 227 aaatgatttaccaagatta 245
           |||||||||||||||||||
Sbjct: 488 aaatgatttaccaagatta 470


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,448
Number of Sequences: 6905
Number of extensions: 14448
Number of successful extensions: 1766
Number of sequences better than 10.0: 213
length of query: 741
length of database: 5,674,871
effective HSP length: 16
effective length of query: 725
effective length of database: 5,564,391
effective search space: 4034183475
effective search space used: 4034183475
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.13
Homology vs DNA 
Query= Contig-U08836-1 (Contig-U08836-1Q) /CSM_Contig/Contig-U08836-1Q.Seq.d
         (741 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ345140) Dictyostelium discoideum cDNA clone:dda21b19, 3' ...  1114   0.0    1
(BJ346877) Dictyostelium discoideum cDNA clone:dda25k08, 3' ...  1090   0.0    1
(BJ327780) Dictyostelium discoideum cDNA clone:dda21b19, 5' ...   159   2e-34  1
(BJ329541) Dictyostelium discoideum cDNA clone:dda25k08, 5' ...   119   2e-22  1
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    34   0.005  14
(AC202899) Zea mays chromosome 6 clone CH201-542P12; ZMMBBc0...    44   0.027  4
(AM453762) Vitis vinifera, whole genome shotgun sequence, co...    52   0.030  1
(AM652471) Entamoeba moshkovskii FIC GSS, clone mosh118a02.q1k.    40   0.29   2
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    32   0.32   13
(AM488289) Vitis vinifera contig VV78X001031.2, whole genome...    48   0.47   1
(AC164055) Bos taurus clone CH240-146A16, *** SEQUENCING IN ...    48   0.47   1
(CZ544889) SRAA-aad58e02.g1 Strongyloides ratti whole genome...    48   0.47   1
(AY242996) Antheraea pernyi mitochondrion, complete genome.        40   0.52   3
(AC151396) Felis catus clone RP86-509D8, WORKING DRAFT SEQUE...    36   1.0    2
(CU570919) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   1.1    8
(BJ392287) Dictyostelium discoideum cDNA clone:dds27h06, 5' ...    30   1.1    4
(BJ371027) Dictyostelium discoideum cDNA clone:ddc56j11, 5' ...    30   1.1    4
(AC222959) Bos taurus clone CH240-434B16, WORKING DRAFT SEQU...    38   1.3    5
(AF404306) Rhizophydium sp. 136 mitochondrion, complete genome.    34   1.6    5
(CR954297) Zebrafish DNA sequence from clone DKEY-69M3 in li...    46   1.9    1
(CR376857) Zebrafish DNA sequence from clone DKEYP-44A3 in l...    46   1.9    1
(AL772171) Mouse DNA sequence from clone RP23-36B3 on chromo...    46   1.9    1
(EF623166) Limnoperla sp. BYU_PL145 16S ribosomal RNA gene, ...    46   1.9    1
(AC155015) Bos taurus clone CH240-35H22, WORKING DRAFT SEQUE...    46   1.9    1
(AC123179) Rattus norvegicus clone CH230-189O21, *** SEQUENC...    46   1.9    1
(AC096075) Rattus norvegicus clone CH230-33H17, *** SEQUENCI...    46   1.9    1
(AC216558) Triticum aestivum clone TAACSPALLhA_0181D10, *** ...    46   1.9    1
(AC186361) Gallus gallus chromosome Z clone CH261-39G1, WORK...    46   1.9    1
(AC170121) Bos taurus clone CH240-229J4, WORKING DRAFT SEQUE...    46   1.9    1
(EI833097) POTJ144TF Solanum tuberosum RHPOTKEY BAC ends Sol...    46   1.9    1
(AE017308) Mycoplasma mobile 163K complete genome.                 46   1.9    1
(AC196762) Citrus sinensis clone CSRBBa-042L24, WORKING DRAF...    38   1.9    3
(AC196748) Citrus sinensis clone CSRBBa-013G11, WORKING DRAF...    38   3.2    5
(U75584) Helicobacter pylori export type III nucleotide bind...    38   3.4    2
(EC821386) SME00003945 esmbsro2 Sawyeria marylandensis cDNA,...    28   3.4    4
(AM446457) Vitis vinifera contig VV78X074856.10, whole genom...    32   3.9    2
(AC176741) Strongylocentrotus purpuratus clone R3-3097B19, W...    42   4.2    4
(ET367120) S0211K10_T7 CHORI-214 Salmo salar genomic clone S...    40   4.3    2
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2...    44   4.4    7
(DX392169) GE__Sa0070B02.b1 Gossypium exiguum WGS library Go...    38   4.8    2
(AL844161) Mouse DNA sequence from clone RP23-343K11 on chro...    38   7.0    4
(AC006635) Caenorhabditis elegans cosmid F38G1, complete seq...    42   7.1    2
(EU221239) Uncultured marine bacterium EB000_55B11, complete...    34   7.1    3
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    34   7.3    18
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    44   7.4    1
(AL078591) Human DNA sequence from clone RP1-198I9 on chromo...    44   7.4    1
(AC105245) Homo sapiens chromosome 18, clone CTD-2515C13, co...    44   7.4    1
(AC096614) Rattus norvegicus clone CH230-123D6, *** SEQUENCI...    44   7.4    1
(AC095434) Rattus norvegicus clone CH230-6P20, *** SEQUENCIN...    44   7.4    1
(AC095164) Rattus norvegicus clone CH230-8D20, WORKING DRAFT...    44   7.4    1
(AC094947) Rattus norvegicus clone CH230-6C17, WORKING DRAFT...    44   7.4    1
(CU856028) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.4    1
(CU855984) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.4    1
(CU582865) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.4    1
(AC062026) Homo sapiens chromosome 18 clone RP11-328M2, WORK...    44   7.4    1
(CR854910) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   7.4    1
(AP001396) Homo sapiens genomic DNA, chromosome 18q12 clone:...    44   7.4    1
(AC214234) Zea mays chromosome 8 clone CH201-351F20; ZMMBBc0...    44   7.4    1
(AC211634) Zea mays chromosome 10 clone CH201-530J16; ZMMBBc...    44   7.4    1
(AC209872) Zea mays chromosome 1 clone CH201-178L24; ZMMBBc0...    44   7.4    1
(AC204437) Zea mays chromosome 10 clone CH201-411G1; ZMMBBc0...    44   7.4    1
(AC204211) Zea mays chromosome UNKNOWN clone CH201-189C22; Z...    44   7.4    1
(AC203765) Zea mays chromosome 6 clone CH201-379K6; ZMMBBc03...    44   7.4    1
(AC200769) Triticum aestivum clone TAACSPALLhA_0298C05, *** ...    44   7.4    1
(AC190592) Zea mays chromosome 5 clone ZMMBBb-160K5; ZMMBBb0...    44   7.4    1
(AC184616) Strongylocentrotus purpuratus clone R3-3093F10, W...    44   7.4    1
(AC180580) Strongylocentrotus purpuratus clone R3-3093F22, W...    44   7.4    1
(AC024971) Homo sapiens chromosome 6 clone RP11-29F4 map 6, ...    44   7.4    1
(ER595317) 1093016219572 Global-Ocean-Sampling_GS-36-01-01-2...    44   7.4    1
(ER588653) 1093016185897 Global-Ocean-Sampling_GS-36-01-01-2...    44   7.4    1
(ER411952) 1095377000418 Global-Ocean-Sampling_GS-34-01-01-1...    44   7.4    1
(ER383835) 1094406029581 Global-Ocean-Sampling_GS-34-01-01-1...    44   7.4    1
(ER378614) 1094338502791 Global-Ocean-Sampling_GS-34-01-01-1...    44   7.4    1
(ER358836) 1092351339884 Global-Ocean-Sampling_GS-34-01-01-1...    44   7.4    1
(ER304721) 1092343738622 Global-Ocean-Sampling_GS-34-01-01-1...    44   7.4    1
(EK461288) 1095469389810 Global-Ocean-Sampling_GS-32-01-01-1...    44   7.4    1
(EK111404) 1092963115224 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.4    1
(EK094364) 1092962025843 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.4    1
(EJ944473) 1093018905322 Global-Ocean-Sampling_GS-30-02-01-1...    44   7.4    1
(EJ941163) 1093018866260 Global-Ocean-Sampling_GS-30-02-01-1...    44   7.4    1
(EJ940993) 1093018864340 Global-Ocean-Sampling_GS-30-02-01-1...    44   7.4    1
(EJ838828) 1093017817287 Global-Ocean-Sampling_GS-30-02-01-1...    44   7.4    1
(EJ555103) 1092959489459 Global-Ocean-Sampling_GS-29-01-01-1...    44   7.4    1
(EJ525358) 1092955181426 Global-Ocean-Sampling_GS-29-01-01-1...    44   7.4    1
(EJ290069) 1095372002237 Global-Ocean-Sampling_GS-27-01-01-1...    44   7.4    1
(EJ283813) 1095368005884 Global-Ocean-Sampling_GS-27-01-01-1...    44   7.4    1
(EJ211176) 1092347002039 Global-Ocean-Sampling_GS-27-01-01-1...    44   7.4    1
(EJ025402) 1095454018613 Global-Ocean-Sampling_GS-26-01-01-1...    44   7.4    1
(ED609416) SALK_008264.54.75.x Arabidopsis thaliana TDNA ins...    44   7.4    1
(CG470731) ZMMBBb0272O11.r ZMMBBb Zea mays subsp. mays genom...    44   7.4    1
(CC754584) ZMMBBb0139B13.f ZMMBBb Zea mays subsp. mays genom...    44   7.4    1
(BX231690) Danio rerio genomic clone DKEY-53E7, genomic surv...    44   7.4    1
(EL915324) INIT2_89_D04.g2_A006 G5 trophont cDNA (INIT2) Ich...    44   7.4    1
(EL912200) INIT2_50_D01.g1_A006 G5 trophont cDNA (INIT2) Ich...    44   7.4    1
(EL912122) INIT2_50_D01.b1_A006 G5 trophont cDNA (INIT2) Ich...    44   7.4    1
(BJ337874) Dictyostelium discoideum cDNA clone:dda59d07, 5' ...    44   7.4    1
(BB901930) Macaca fascicularis cDNA clone: Qlv-U81A-B7, 3'en...    44   7.4    1
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    44   7.4    1
(AC023980) Homo sapiens chromosome 5 clone RP11-192H6 map 5,...    42   7.6    4
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co...    34   7.9    10

>(BJ345140) Dictyostelium discoideum cDNA clone:dda21b19, 3' end,
           single read.
          Length = 572

 Score = 1114 bits (562), Expect = 0.0
 Identities = 571/571 (100%)
 Strand = Plus / Minus


Query: 171 aaagagaaattaagaatttgtaaagaaggttatgattcattacatgaagaattattaaat 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 aaagagaaattaagaatttgtaaagaaggttatgattcattacatgaagaattattaaat 513


Query: 231 gatttaccaagattaaatgaagataaattaatttttatagattatttagttgcttcttta 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gatttaccaagattaaatgaagataaattaatttttatagattatttagttgcttcttta 453


Query: 291 ataaaatatcaatcagaatttcataaaaaagtatcatatgaatggagtccattaccatca 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ataaaatatcaatcagaatttcataaaaaagtatcatatgaatggagtccattaccatca 393


Query: 351 cttacaaaacatgttgatgaatattcaggtagagatcatcaaccagtaattacaagtgtt 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 cttacaaaacatgttgatgaatattcaggtagagatcatcaaccagtaattacaagtgtt 333


Query: 411 gaaagatcagcagcatcaattaatttaagatcagatccagtatttaagagtaatgcgtca 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gaaagatcagcagcatcaattaatttaagatcagatccagtatttaagagtaatgcgtca 273


Query: 471 ataaagatgaaaccaggtgcacaagatcaacaacaatattcaactgtagataaagatatc 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ataaagatgaaaccaggtgcacaagatcaacaacaatattcaactgtagataaagatatc 213


Query: 531 catcaatcaccaaatccttcaaatttaaatttacaaaaatcaacaccaaatccatatggt 590
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 catcaatcaccaaatccttcaaatttaaatttacaaaaatcaacaccaaatccatatggt 153


Query: 591 ggtgcttctgctccaccacctttatatggtggtggtggcagttcaactgccacagcatta 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 ggtgcttctgctccaccacctttatatggtggtggtggcagttcaactgccacagcatta 93


Query: 651 tatgatttcactggtgttgatagttcnnaattatcatttagagctggtgatatcattaca 710
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  tatgatttcactggtgttgatagttcnnaattatcatttagagctggtgatatcattaca 33


Query: 711 attcataaatcagaaggnaaggtggaaggta 741
           |||||||||||||||||||||||||||||||
Sbjct: 32  attcataaatcagaaggnaaggtggaaggta 2

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 888,964,133
Number of extensions: 58805959
Number of successful extensions: 5278819
Number of sequences better than 10.0: 127
Length of query: 741
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 717
Effective length of database: 97,308,875,965
Effective search space: 69770464066905
Effective search space used: 69770464066905
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.24
Homology vs Protein 
Query= Contig-U08836-1 (Contig-U08836-1Q) /CSM_Contig/Contig-U08836-1Q.Seq.d
         (741 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR380955_381(CR380955|pid:none) Candida glabrata strain CBS138 c...    44   0.005
(Q6BNP6) RecName: Full=Class E vacuolar protein-sorting machiner...    43   0.009
BC124012_1(BC124012|pid:none) Xenopus tropicalis hypothetical pr...    42   0.015
AE017343_233(AE017343|pid:none) Cryptococcus neoformans var. neo...    42   0.020
AC117070_15(AC117070|pid:none) Dictyostelium discoideum chromoso...    42   0.026
AE016816_470(AE016816|pid:none) Ashbya gossypii (= Eremothecium ...    42   0.026
BC057707_1(BC057707|pid:none) Xenopus laevis proto-oncogene tyro...    41   0.044
FM992693_366(FM992693|pid:none) Candida dubliniensis CD36 chromo...    41   0.044
A45501(A45501;S08517)protein-tyrosine kinase (EC 2.7.1.112) yes ...    41   0.044
(Q2US45) RecName: Full=Myosin-1; AltName: Full=Class I unconvent...    41   0.044
BC103355_1(BC103355|pid:none) Bos taurus hematopoietic cell-spec...    40   0.058
(Q5R5W0) RecName: Full=LIM and SH3 domain protein 1;          Sh...    39   0.17
BC125934_1(BC125934|pid:none) Danio rerio si:dkey-9a20.6, mRNA (...    39   0.17
AF051353_1(AF051353|pid:none) Acanthamoeba castellanii myosin IC...    39   0.22
(Q14847) RecName: Full=LIM and SH3 domain protein 1;          Sh...    39   0.22
(P10569) RecName: Full=Myosin IC heavy chain;  &J02974_1(J02974|...    39   0.22
AM920437_1543(AM920437|pid:none) Penicillium chrysogenum Wiscons...    39   0.22
FM992689_442(FM992689|pid:none) Candida dubliniensis CD36 chromo...    39   0.22
AC116330_30(AC116330|pid:none) Dictyostelium discoideum chromoso...    38   0.29
(Q557J6) RecName: Full=Drebrin-like protein; AltName: Full=Actin...    38   0.29
BC012460_1(BC012460|pid:none) Homo sapiens LIM and SH3 protein 1...    38   0.29
AK289847_1(AK289847|pid:none) Homo sapiens cDNA FLJ76601 complet...    38   0.29
AM270339_10(AM270339|pid:none) Aspergillus niger contig An15c012...    38   0.29
AL807371_6(AL807371|pid:none) Neurospora crassa DNA linkage grou...    38   0.29
CR382121_351(CR382121|pid:none) Kluyveromyces lactis strain NRRL...    38   0.29
U97407_8(U97407|pid:none) Caenorhabditis elegans cosmid C34G6, c...    38   0.38
CR926293_1(CR926293|pid:none) Xenopus tropicalis finished cDNA, ...    38   0.38
G87789(G87789)protein C34G6.7 [imported] - Caenorhabditis elegans      38   0.38
BC093196_1(BC093196|pid:none) Danio rerio zgc:112091, mRNA (cDNA...    38   0.38
(Q9UNF0) RecName: Full=Protein kinase C and casein kinase substr...    38   0.38
BC100228_1(BC100228|pid:none) Xenopus laevis hypothetical protei...    38   0.38
BC082510_1(BC082510|pid:none) Xenopus tropicalis v-yes-1 Yamaguc...    38   0.38
DQ896161_1(DQ896161|pid:none) Synthetic construct Homo sapiens c...    38   0.38
AK298696_1(AK298696|pid:none) Homo sapiens cDNA FLJ59379 complet...    37   0.49
(P14317) RecName: Full=Hematopoietic lineage cell-specific prote...    37   0.49
(A8PWF6) RecName: Full=Myosin-1; AltName: Full=Class I unconvent...    37   0.64
(Q3B7M5) RecName: Full=LIM and SH3 domain protein 1;          Sh...    37   0.64
(Q6C2N2) RecName: Full=Class E vacuolar protein-sorting machiner...    37   0.64
AP007164_582(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    37   0.64
BC095582_1(BC095582|pid:none) Danio rerio zgc:111880, mRNA (cDNA...    37   0.64
AE013599_1597(AE013599|pid:none) Drosophila melanogaster chromos...    37   0.64
CU928169_407(CU928169|pid:none) Kluyveromyces thermotolerans str...    37   0.84
(A4RF61) RecName: Full=Class E vacuolar protein-sorting machiner...    37   0.84
V01170_1(V01170|pid:none) Y73 sarcoma virus complete genome, gen...    37   0.84
(Q5KFQ8) RecName: Full=Class E vacuolar protein-sorting machiner...    37   0.84
AM270061_75(AM270061|pid:none) Aspergillus niger contig An03c020...    36   1.1
(O43125) RecName: Full=Protein csh3;  &AB011825_1(AB011825|pid:n...    36   1.1
(Q7SDM3) RecName: Full=Myosin-1; AltName: Full=Class I unconvent...    36   1.1
(O13154) RecName: Full=Protein kinase C and casein kinase substr...    36   1.1
(Q61792) RecName: Full=LIM and SH3 domain protein 1;          Sh...    36   1.1
AM502248_145(AM502248|pid:none) Leishmania infantum chromosome 30.     36   1.1
FN357377_11(FN357377|pid:none) Schistosoma mansoni genome sequen...    36   1.4
BC072737_1(BC072737|pid:none) Xenopus laevis MGC79086 protein, m...    36   1.4
BX548038_1(BX548038|pid:none) Zebrafish DNA sequence from clone ...    35   1.9
(A7A261) RecName: Full=LAS seventeen-binding protein 3;         ...    35   1.9
U58882_1(U58882|pid:none) Mus musculus SH3 domain-containing pro...    35   1.9
BC085566_1(BC085566|pid:none) Danio rerio signal transducing ada...    35   1.9
CR382128_547(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...    35   2.4
(Q68FW8) RecName: Full=Bridging integrator 3;  &BC079146_1(BC079...    35   2.4
(P00527) RecName: Full=Tyrosine-protein kinase transforming prot...    35   2.4
AB168387_1(AB168387|pid:none) Macaca fascicularis testis cDNA cl...    35   3.2
BC085613_1(BC085613|pid:none) Homo sapiens SH3 domain containing...    35   3.2
CP000496_1039(CP000496|pid:none) Pichia stipitis CBS 6054 chromo...    35   3.2
AK092528_1(AK092528|pid:none) Homo sapiens cDNA FLJ35209 fis, cl...    35   3.2
AL133047_1(AL133047|pid:none) Homo sapiens mRNA; cDNA DKFZp434D0...    35   3.2
BX647422_1(BX647422|pid:none) Homo sapiens mRNA; cDNA DKFZp686I0...    35   3.2
CR382139_517(CR382139|pid:none) Debaryomyces hansenii strain CBS...    35   3.2
FM992688_249(FM992688|pid:none) Candida dubliniensis CD36 chromo...    35   3.2
AK294476_1(AK294476|pid:none) Homo sapiens cDNA FLJ61692 complet...    35   3.2
CU928180_541(CU928180|pid:none) Kluyveromyces thermotolerans str...    35   3.2
AK291025_1(AK291025|pid:none) Homo sapiens cDNA FLJ76174 complet...    35   3.2
CR382130_562(CR382130|pid:none) Yarrowia lipolytica strain CLIB1...    35   3.2
BC108893_1(BC108893|pid:none) Homo sapiens SH3 domain containing...    35   3.2
AM920435_105(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    35   3.2
BC108890_1(BC108890|pid:none) Homo sapiens SH3 domain containing...    35   3.2
AK170915_1(AK170915|pid:none) Mus musculus NOD-derived CD11c +ve...    35   3.2
CP000360_2787(CP000360|pid:none) Acidobacteria bacterium Ellin34...    35   3.2
BC076759_1(BC076759|pid:none) Xenopus laevis hypothetical protei...    35   3.2
AF068915_1(AF068915|pid:none) Homo sapiens bridging-integrator p...    34   4.2
AK301153_1(AK301153|pid:none) Homo sapiens cDNA FLJ54942 complet...    34   4.2
AK165555_1(AK165555|pid:none) Mus musculus bladder RCB-0544 MBT-...    34   4.2
CU928179_27(CU928179|pid:none) Zygosaccharomyces rouxii strain C...    34   4.2
(Q3SZ01) RecName: Full=SH3 domain-containing YSC84-like protein ...    34   4.2
(Q13588) RecName: Full=GRB2-related adapter protein;  &AY888503_...    34   4.2
AJ620750_1(AJ620750|pid:none) Danio rerio mRNA for protein-tyros...    34   4.2
(P49710) RecName: Full=Hematopoietic lineage cell-specific prote...    34   4.2
AY344225_1(AY344225|pid:none) Candida glabrata Epa5p (EPA5) and ...    34   4.2
AK084249_1(AK084249|pid:none) Mus musculus 12 days embryo eyebal...    34   4.2
AY891149_1(AY891149|pid:none) Synthetic construct Homo sapiens c...    34   4.2
AX076993_1(AX076993|pid:none) Sequence 1 from Patent WO0107616. ...    34   5.4
TVMSVV(A61187;A39576;S36941;S23669)transforming protein vav - mo...    34   5.4
(Q9JI08) RecName: Full=Bridging integrator 3;  &AF244361_1(AF244...    34   5.4
AK293808_1(AK293808|pid:none) Homo sapiens cDNA FLJ56057 complet...    34   5.4
BC020487_1(BC020487|pid:none) Mus musculus vav 1 oncogene, mRNA ...    34   5.4
EF087463_1(EF087463|pid:none) Picea sitchensis clone WS02917_K23...    34   5.4
AK151367_1(AK151367|pid:none) Mus musculus bone marrow macrophag...    34   5.4
AK088586_1(AK088586|pid:none) Mus musculus 2 days neonate thymus...    34   5.4
AB385156_1(AB385156|pid:none) Synthetic construct DNA, clone: pF...    34   5.4
AK154183_1(AK154183|pid:none) Mus musculus NOD-derived CD11c +ve...    34   5.4
DQ892143_1(DQ892143|pid:none) Synthetic construct clone IMAGE:10...    34   5.4
A47106(A47106;B47106)myosin heavy chain ID - slime mold (Dictyos...    34   5.4
BC025262_1(BC025262|pid:none) Homo sapiens IQ motif and WD repea...    34   5.4
JQ2220(JQ2220) hydroxyproline-rich glycoprotein precursor - Chla...    34   5.4
(P09324) RecName: Full=Tyrosine-protein kinase Yes;          EC=...    34   5.4
AK132886_1(AK132886|pid:none) Mus musculus adult male testis cDN...    34   5.4
AF157016_1(AF157016|pid:none) Rattus norvegicus neuronal C-SRC t...    34   5.4
CR382135_646(CR382135|pid:none) Debaryomyces hansenii strain CBS...    34   5.4
(Q58WW2) RecName: Full=Nuclear receptor interaction protein;    ...    34   5.4
AK151373_1(AK151373|pid:none) Mus musculus bone marrow macrophag...    34   5.4
AP007150_559(AP007150|pid:none) Aspergillus oryzae RIB40 genomic...    33   7.1
L06795_2(L06795|pid:none) Saccharomyces cerevisiae open reading ...    33   7.1
(P32793) RecName: Full=Protein YSC84; AltName: Full=LAS seventee...    33   7.1
AF116725_1(AF116725|pid:none) Homo sapiens MSTP055 mRNA, complet...    33   7.1
AC116957_76(AC116957|pid:none) Dictyostelium discoideum chromoso...    33   7.1
(Q555D2) RecName: Full=Uncharacterized protein DDB_G0274915;           33   7.1
AK226964_1(AK226964|pid:none) Arabidopsis thaliana mRNA for hypo...    33   7.1
BC153241_1(BC153241|pid:none) Bos taurus protein kinase C and ca...    33   7.1
AX076995_1(AX076995|pid:none) Sequence 3 from Patent WO0107616. ...    33   7.1
(P50545) RecName: Full=Tyrosine-protein kinase HCK;          EC=...    33   7.1
BC045942_1(BC045942|pid:none) Danio rerio SH3-domain GRB2-like 1...    33   7.1
X62345_1(X62345|pid:none) R.rattus hck mRNA for protein-tyrosine...    33   7.1
BC091160_1(BC091160|pid:none) Rattus norvegicus vav 1 guanine nu...    33   7.1
AK091778_1(AK091778|pid:none) Homo sapiens cDNA FLJ34459 fis, cl...    33   7.1
(P08103) RecName: Full=Tyrosine-protein kinase HCK;          EC=...    33   7.1
CP001216_114(CP001216|pid:none) Bacillus anthracis str. CDC 684 ...    33   7.1
(A7MBI0) RecName: Full=Protein kinase C and casein kinase substr...    33   7.1
BC015619_1(BC015619|pid:none) Homo sapiens BAI1-associated prote...    33   7.1
CP001406_107(CP001406|pid:none) Bacillus cereus 03BB102 plasmid ...    33   7.1
FM992695_111(FM992695|pid:none) Candida dubliniensis CD36 chromo...    33   9.3
BC033889_1(BC033889|pid:none) Homo sapiens cortactin, mRNA (cDNA...    33   9.3
(Q9NQY0) RecName: Full=Bridging integrator 3;  &AF271732_1(AF271...    33   9.3
AK001289_1(AK001289|pid:none) Homo sapiens cDNA FLJ10427 fis, cl...    33   9.3
AM270199_78(AM270199|pid:none) Aspergillus niger contig An09c010...    33   9.3
AY892324_1(AY892324|pid:none) Synthetic construct Homo sapiens c...    33   9.3
CP000236_191(CP000236|pid:none) Ehrlichia chaffeensis str. Arkan...    33   9.3
BC116544_1(BC116544|pid:none) Danio rerio v-src sarcoma (Schmidt...    33   9.3
(Q4P5J4) RecName: Full=Class E vacuolar protein-sorting machiner...    33   9.3
JQ1321(JQ1321;S18974) protein-tyrosine kinase (EC 2.7.1.112) hck...    33   9.3
AM238663_1293(AM238663|pid:none) Streptomyces ambofaciens ATCC 2...    33   9.3
CR788310_2(CR788310|pid:none) Zebrafish DNA sequence from clone ...    33   9.3
BC066077_1(BC066077|pid:none) Mus musculus DEAH (Asp-Glu-Ala-His...    33   9.3
CP000850_933(CP000850|pid:none) Salinispora arenicola CNS-205, c...    33   9.3
(Q14247) RecName: Full=Src substrate cortactin; AltName: Full=Am...    33   9.3
(Q91X43) RecName: Full=SH3 domain-containing protein 19; AltName...    33   9.3
AC116986_64(AC116986|pid:none) Dictyostelium discoideum chromoso...    33   9.3
CR861394_1(CR861394|pid:none) Pongo abelii mRNA; cDNA DKFZp459H1...    33   9.3
AF304353_1(AF304353|pid:none) Lampetra fluviatilis endophilin SH...    33   9.3
AL133293_1(AL133293|pid:none) Human DNA sequence from clone RP5-...    33   9.3
CU928180_530(CU928180|pid:none) Kluyveromyces thermotolerans str...    33   9.3
AK304582_1(AK304582|pid:none) Homo sapiens cDNA FLJ54828 complet...    33   9.3
(Q5A895) RecName: Full=Class E vacuolar protein-sorting machiner...    33   9.3
AK158686_1(AK158686|pid:none) Mus musculus visual cortex cDNA, R...    33   9.3
BC031117_1(BC031117|pid:none) Mus musculus SH3 domain protein D1...    33   9.3
(Q9Z0W5) RecName: Full=Protein kinase C and casein kinase substr...    33   9.3
BC001223_1(BC001223|pid:none) Homo sapiens bridging integrator 3...    33   9.3
A48063(A48063) mammary tumor/squamous cell carcinoma-associated ...    33   9.3
FN392320_120(FN392320|pid:none) Pichia pastoris GS115 chromosome...    33   9.3

>CR380955_381(CR380955|pid:none) Candida glabrata strain CBS138
           chromosome I complete sequence.
          Length = 437

 Score = 43.9 bits (102), Expect = 0.005
 Identities = 29/76 (38%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
 Frame = +3

Query: 537 SPNPSNLNLQKSTPNPYGGASAPPPLYGGGGSSTATALYDFTGVDSSXLSFRAGDIITIH 716
           SP  +N     S P     A  PP      G+  A ALY F G ++  LSFR GD+ITI
Sbjct: 354 SPGATNNGRSNSRP-----ADEPPRRDASSGAPKAVALYSFAGEEAGDLSFRKGDVITII 408

Query: 717 KSE--------GKVEG 740
           K          GKV G
Sbjct: 409 KKSDSQNDWWTGKVNG 424

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 942,234,427
Number of extensions: 18432535
Number of successful extensions: 65722
Number of sequences better than 10.0: 157
Number of HSP's gapped: 64946
Number of HSP's successfully gapped: 157
Length of query: 247
Length of database: 1,040,966,779
Length adjustment: 125
Effective length of query: 122
Effective length of database: 640,431,154
Effective search space: 78132600788
Effective search space used: 78132600788
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.49  gvh: 0.10  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for Contig-U08836-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0