Contig-U08836-1 |
Contig ID |
Contig-U08836-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
gap included |
Contig length |
731 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
2789620 |
End point |
2788943 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
1 |
Number of EST |
2 |
Link to clone list |
U08836 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.13 |
Homology vs DNA |
Query= Contig-U08836-1 (Contig-U08836-1Q) /CSM_Contig/Contig-U08836-1Q.Seq.d (741 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ345140) Dictyostelium discoideum cDNA clone:dda21b19, 3' ... 1114 0.0 1 (BJ346877) Dictyostelium discoideum cDNA clone:dda25k08, 3' ... 1090 0.0 1 (BJ327780) Dictyostelium discoideum cDNA clone:dda21b19, 5' ... 159 2e-34 1 (BJ329541) Dictyostelium discoideum cDNA clone:dda25k08, 5' ... 119 2e-22 1 (CU469464) Candidatus Phytoplasma mali strain AT complete ch... 34 0.005 14 (AC202899) Zea mays chromosome 6 clone CH201-542P12; ZMMBBc0... 44 0.027 4 (AM453762) Vitis vinifera, whole genome shotgun sequence, co... 52 0.030 1 (AM652471) Entamoeba moshkovskii FIC GSS, clone mosh118a02.q1k. 40 0.29 2 (AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 32 0.32 13 (AM488289) Vitis vinifera contig VV78X001031.2, whole genome... 48 0.47 1 (AC164055) Bos taurus clone CH240-146A16, *** SEQUENCING IN ... 48 0.47 1 (CZ544889) SRAA-aad58e02.g1 Strongyloides ratti whole genome... 48 0.47 1 (AY242996) Antheraea pernyi mitochondrion, complete genome. 40 0.52 3 (AC151396) Felis catus clone RP86-509D8, WORKING DRAFT SEQUE... 36 1.0 2 (CU570919) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 1.1 8 (BJ392287) Dictyostelium discoideum cDNA clone:dds27h06, 5' ... 30 1.1 4 (BJ371027) Dictyostelium discoideum cDNA clone:ddc56j11, 5' ... 30 1.1 4 (AC222959) Bos taurus clone CH240-434B16, WORKING DRAFT SEQU... 38 1.3 5 (AF404306) Rhizophydium sp. 136 mitochondrion, complete genome. 34 1.6 5 (CR954297) Zebrafish DNA sequence from clone DKEY-69M3 in li... 46 1.9 1 (CR376857) Zebrafish DNA sequence from clone DKEYP-44A3 in l... 46 1.9 1 (AL772171) Mouse DNA sequence from clone RP23-36B3 on chromo... 46 1.9 1 (EF623166) Limnoperla sp. BYU_PL145 16S ribosomal RNA gene, ... 46 1.9 1 (AC155015) Bos taurus clone CH240-35H22, WORKING DRAFT SEQUE... 46 1.9 1 (AC123179) Rattus norvegicus clone CH230-189O21, *** SEQUENC... 46 1.9 1 (AC096075) Rattus norvegicus clone CH230-33H17, *** SEQUENCI... 46 1.9 1 (AC216558) Triticum aestivum clone TAACSPALLhA_0181D10, *** ... 46 1.9 1 (AC186361) Gallus gallus chromosome Z clone CH261-39G1, WORK... 46 1.9 1 (AC170121) Bos taurus clone CH240-229J4, WORKING DRAFT SEQUE... 46 1.9 1 (EI833097) POTJ144TF Solanum tuberosum RHPOTKEY BAC ends Sol... 46 1.9 1 (AE017308) Mycoplasma mobile 163K complete genome. 46 1.9 1 (AC196762) Citrus sinensis clone CSRBBa-042L24, WORKING DRAF... 38 1.9 3 (AC196748) Citrus sinensis clone CSRBBa-013G11, WORKING DRAF... 38 3.2 5 (U75584) Helicobacter pylori export type III nucleotide bind... 38 3.4 2 (EC821386) SME00003945 esmbsro2 Sawyeria marylandensis cDNA,... 28 3.4 4 (AM446457) Vitis vinifera contig VV78X074856.10, whole genom... 32 3.9 2 (AC176741) Strongylocentrotus purpuratus clone R3-3097B19, W... 42 4.2 4 (ET367120) S0211K10_T7 CHORI-214 Salmo salar genomic clone S... 40 4.3 2 (AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2... 44 4.4 7 (DX392169) GE__Sa0070B02.b1 Gossypium exiguum WGS library Go... 38 4.8 2 (AL844161) Mouse DNA sequence from clone RP23-343K11 on chro... 38 7.0 4 (AC006635) Caenorhabditis elegans cosmid F38G1, complete seq... 42 7.1 2 (EU221239) Uncultured marine bacterium EB000_55B11, complete... 34 7.1 3 (CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 34 7.3 18 (AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 44 7.4 1 (AL078591) Human DNA sequence from clone RP1-198I9 on chromo... 44 7.4 1 (AC105245) Homo sapiens chromosome 18, clone CTD-2515C13, co... 44 7.4 1 (AC096614) Rattus norvegicus clone CH230-123D6, *** SEQUENCI... 44 7.4 1 (AC095434) Rattus norvegicus clone CH230-6P20, *** SEQUENCIN... 44 7.4 1 (AC095164) Rattus norvegicus clone CH230-8D20, WORKING DRAFT... 44 7.4 1 (AC094947) Rattus norvegicus clone CH230-6C17, WORKING DRAFT... 44 7.4 1 (CU856028) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.4 1 (CU855984) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.4 1 (CU582865) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.4 1 (AC062026) Homo sapiens chromosome 18 clone RP11-328M2, WORK... 44 7.4 1 (CR854910) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 7.4 1 (AP001396) Homo sapiens genomic DNA, chromosome 18q12 clone:... 44 7.4 1 (AC214234) Zea mays chromosome 8 clone CH201-351F20; ZMMBBc0... 44 7.4 1 (AC211634) Zea mays chromosome 10 clone CH201-530J16; ZMMBBc... 44 7.4 1 (AC209872) Zea mays chromosome 1 clone CH201-178L24; ZMMBBc0... 44 7.4 1 (AC204437) Zea mays chromosome 10 clone CH201-411G1; ZMMBBc0... 44 7.4 1 (AC204211) Zea mays chromosome UNKNOWN clone CH201-189C22; Z... 44 7.4 1 (AC203765) Zea mays chromosome 6 clone CH201-379K6; ZMMBBc03... 44 7.4 1 (AC200769) Triticum aestivum clone TAACSPALLhA_0298C05, *** ... 44 7.4 1 (AC190592) Zea mays chromosome 5 clone ZMMBBb-160K5; ZMMBBb0... 44 7.4 1 (AC184616) Strongylocentrotus purpuratus clone R3-3093F10, W... 44 7.4 1 (AC180580) Strongylocentrotus purpuratus clone R3-3093F22, W... 44 7.4 1 (AC024971) Homo sapiens chromosome 6 clone RP11-29F4 map 6, ... 44 7.4 1 (ER595317) 1093016219572 Global-Ocean-Sampling_GS-36-01-01-2... 44 7.4 1 (ER588653) 1093016185897 Global-Ocean-Sampling_GS-36-01-01-2... 44 7.4 1 (ER411952) 1095377000418 Global-Ocean-Sampling_GS-34-01-01-1... 44 7.4 1 (ER383835) 1094406029581 Global-Ocean-Sampling_GS-34-01-01-1... 44 7.4 1 (ER378614) 1094338502791 Global-Ocean-Sampling_GS-34-01-01-1... 44 7.4 1 (ER358836) 1092351339884 Global-Ocean-Sampling_GS-34-01-01-1... 44 7.4 1 (ER304721) 1092343738622 Global-Ocean-Sampling_GS-34-01-01-1... 44 7.4 1 (EK461288) 1095469389810 Global-Ocean-Sampling_GS-32-01-01-1... 44 7.4 1 (EK111404) 1092963115224 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.4 1 (EK094364) 1092962025843 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.4 1 (EJ944473) 1093018905322 Global-Ocean-Sampling_GS-30-02-01-1... 44 7.4 1 (EJ941163) 1093018866260 Global-Ocean-Sampling_GS-30-02-01-1... 44 7.4 1 (EJ940993) 1093018864340 Global-Ocean-Sampling_GS-30-02-01-1... 44 7.4 1 (EJ838828) 1093017817287 Global-Ocean-Sampling_GS-30-02-01-1... 44 7.4 1 (EJ555103) 1092959489459 Global-Ocean-Sampling_GS-29-01-01-1... 44 7.4 1 (EJ525358) 1092955181426 Global-Ocean-Sampling_GS-29-01-01-1... 44 7.4 1 (EJ290069) 1095372002237 Global-Ocean-Sampling_GS-27-01-01-1... 44 7.4 1 (EJ283813) 1095368005884 Global-Ocean-Sampling_GS-27-01-01-1... 44 7.4 1 (EJ211176) 1092347002039 Global-Ocean-Sampling_GS-27-01-01-1... 44 7.4 1 (EJ025402) 1095454018613 Global-Ocean-Sampling_GS-26-01-01-1... 44 7.4 1 (ED609416) SALK_008264.54.75.x Arabidopsis thaliana TDNA ins... 44 7.4 1 (CG470731) ZMMBBb0272O11.r ZMMBBb Zea mays subsp. mays genom... 44 7.4 1 (CC754584) ZMMBBb0139B13.f ZMMBBb Zea mays subsp. mays genom... 44 7.4 1 (BX231690) Danio rerio genomic clone DKEY-53E7, genomic surv... 44 7.4 1 (EL915324) INIT2_89_D04.g2_A006 G5 trophont cDNA (INIT2) Ich... 44 7.4 1 (EL912200) INIT2_50_D01.g1_A006 G5 trophont cDNA (INIT2) Ich... 44 7.4 1 (EL912122) INIT2_50_D01.b1_A006 G5 trophont cDNA (INIT2) Ich... 44 7.4 1 (BJ337874) Dictyostelium discoideum cDNA clone:dda59d07, 5' ... 44 7.4 1 (BB901930) Macaca fascicularis cDNA clone: Qlv-U81A-B7, 3'en... 44 7.4 1 (AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 44 7.4 1 (AC023980) Homo sapiens chromosome 5 clone RP11-192H6 map 5,... 42 7.6 4 (CP000061) Aster yellows witches'-broom phytoplasma AYWB, co... 34 7.9 10
>(BJ345140) Dictyostelium discoideum cDNA clone:dda21b19, 3' end, single read. Length = 572
Score = 1114 bits (562), Expect = 0.0 Identities = 571/571 (100%) Strand = Plus / Minus
Query: 171 aaagagaaattaagaatttgtaaagaaggttatgattcattacatgaagaattattaaat 230 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 572 aaagagaaattaagaatttgtaaagaaggttatgattcattacatgaagaattattaaat 513
Query: 231 gatttaccaagattaaatgaagataaattaatttttatagattatttagttgcttcttta 290 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 512 gatttaccaagattaaatgaagataaattaatttttatagattatttagttgcttcttta 453
Query: 291 ataaaatatcaatcagaatttcataaaaaagtatcatatgaatggagtccattaccatca 350 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 452 ataaaatatcaatcagaatttcataaaaaagtatcatatgaatggagtccattaccatca 393
Query: 351 cttacaaaacatgttgatgaatattcaggtagagatcatcaaccagtaattacaagtgtt 410 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 392 cttacaaaacatgttgatgaatattcaggtagagatcatcaaccagtaattacaagtgtt 333
Query: 411 gaaagatcagcagcatcaattaatttaagatcagatccagtatttaagagtaatgcgtca 470 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 332 gaaagatcagcagcatcaattaatttaagatcagatccagtatttaagagtaatgcgtca 273
Query: 471 ataaagatgaaaccaggtgcacaagatcaacaacaatattcaactgtagataaagatatc 530 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 272 ataaagatgaaaccaggtgcacaagatcaacaacaatattcaactgtagataaagatatc 213
Query: 531 catcaatcaccaaatccttcaaatttaaatttacaaaaatcaacaccaaatccatatggt 590 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 212 catcaatcaccaaatccttcaaatttaaatttacaaaaatcaacaccaaatccatatggt 153
Query: 591 ggtgcttctgctccaccacctttatatggtggtggtggcagttcaactgccacagcatta 650 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 152 ggtgcttctgctccaccacctttatatggtggtggtggcagttcaactgccacagcatta 93
Query: 651 tatgatttcactggtgttgatagttcnnaattatcatttagagctggtgatatcattaca 710 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 92 tatgatttcactggtgttgatagttcnnaattatcatttagagctggtgatatcattaca 33
Query: 711 attcataaatcagaaggnaaggtggaaggta 741 ||||||||||||||||||||||||||||||| Sbjct: 32 attcataaatcagaaggnaaggtggaaggta 2
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 888,964,133 Number of extensions: 58805959 Number of successful extensions: 5278819 Number of sequences better than 10.0: 127 Length of query: 741 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 717 Effective length of database: 97,308,875,965 Effective search space: 69770464066905 Effective search space used: 69770464066905 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.24 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
1 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |