Contig-U08780-1 |
Contig ID |
Contig-U08780-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1725 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
7268452 |
End point |
7266726 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
9 |
Number of EST |
15 |
Link to clone list |
U08780 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.13 |
Homology vs DNA |
Query= Contig-U08780-1 (Contig-U08780-1Q) /CSM_Contig/Contig-U08780-1Q.Seq.d (1735 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ343731) Dictyostelium discoideum cDNA clone:dda17b04, 3' ... 1489 0.0 1 (BJ432442) Dictyostelium discoideum cDNA clone:ddv18n18, 3' ... 1457 0.0 1 (BJ343502) Dictyostelium discoideum cDNA clone:dda16d11, 3' ... 1453 0.0 1 (C94314) Dictyostelium discoideum slug cDNA, clone SSK827. 1275 0.0 1 (BJ372837) Dictyostelium discoideum cDNA clone:ddc14l10, 3' ... 1178 0.0 2 (AC115581) Dictyostelium discoideum chromosome 2 map complem... 829 0.0 8 (BJ359415) Dictyostelium discoideum cDNA clone:ddc14l10, 5' ... 642 0.0 2 (BJ326572) Dictyostelium discoideum cDNA clone:dda17b04, 5' ... 622 0.0 2 (BJ326381) Dictyostelium discoideum cDNA clone:dda16d11, 5' ... 478 0.0 3 (BJ414303) Dictyostelium discoideum cDNA clone:ddv18n18, 5' ... 642 0.0 2 (BJ372792) Dictyostelium discoideum cDNA clone:ddc14l06, 3' ... 351 e-147 2 (AU268189) Dictyostelium discoideum vegetative cDNA clone:VS... 347 9e-91 1 (AU268190) Dictyostelium discoideum vegetative cDNA clone:VS... 303 1e-77 1 (AU072399) Dictyostelium discoideum slug cDNA, clone SSE416. 266 3e-66 1 (AU037883) Dictyostelium discoideum slug cDNA, clone SSE416. 143 8e-61 2 (BJ359378) Dictyostelium discoideum cDNA clone:ddc14l06, 5' ... 226 2e-54 1 (AU262037) Dictyostelium discoideum vegetative cDNA clone:VS... 105 6e-18 1 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 34 2e-05 15 (AE014847) Plasmodium falciparum 3D7 chromosome 12, section ... 34 0.004 15 (Z98551) Plasmodium falciparum MAL3P6. 36 0.007 10 (AL844509) Plasmodium falciparum chromosome 13. 38 0.008 15 (BX247884) Zebrafish DNA sequence from clone CH211-174M1 in ... 38 0.010 10 (AC179028) Strongylocentrotus purpuratus clone R3-1108E15, W... 40 0.012 7 (AM463778) Vitis vinifera contig VV78X156197.5, whole genome... 54 0.018 1 (CT535883) A BAC library has been constructed from cultivar ... 54 0.018 1 (AC116924) Dictyostelium discoideum chromosome 2 map 6357117... 38 0.025 9 (AE014844) Plasmodium falciparum 3D7 chromosome 12, section ... 32 0.031 15 (CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 34 0.036 18 (AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 40 0.042 14 (AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 34 0.051 12 (BX248583) Blochmannia floridanus complete genome. 38 0.051 18 (CP000102) Methanosphaera stadtmanae DSM 3091, complete genome. 42 0.054 18 (AL844506) Plasmodium falciparum chromosome 7. 38 0.058 15 (AM440046) Vitis vinifera contig VV78X271304.8, whole genome... 36 0.073 6 (CZ536416) SRAA-aad03b05.g1 Strongyloides ratti whole genome... 40 0.11 3 (AC116960) Dictyostelium discoideum chromosome 2 map complem... 38 0.12 13 (AC158376) Medicago truncatula chromosome 2 clone mth2-64d17... 40 0.13 6 (AC117267) Dictyostelium discoideum chromosome 2 map 5836255... 36 0.14 7 (AC131513) Strongylocentrotus purpuratus clone Sp91A10, *** ... 38 0.15 13 (CR762496) Zebrafish DNA sequence from clone DKEY-212J2 in l... 34 0.16 2 (AC203555) Medicago truncatula clone mth2-58e9, complete seq... 36 0.17 2 (AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4... 32 0.18 16 (AC156829) Medicago truncatula clone mth2-123c10, WORKING DR... 36 0.18 2 (CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 32 0.19 24 (AL096782) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 34 0.21 8 (AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5... 32 0.24 14 (AZ767632) 1M0566L21R Mouse 10kb plasmid UUGC1M library Mus ... 38 0.27 2 (AL844507) Plasmodium falciparum chromosome 8. 42 0.32 16 (AC207598) Pan troglodytes BAC clone CH251-404N5 from chromo... 34 0.35 9 (AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 34 0.36 15 (AC013748) Homo sapiens chromosome 4 clone RP11-24H18 map 4,... 38 0.38 10 (EF533697) Glycine max clone BAC GM_WBb035N07, *** SEQUENCIN... 46 0.38 10 (AC193480) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB... 44 0.40 5 (AC083799) Homo sapiens 3 BAC RP11-332M2 (Roswell Park Cance... 46 0.40 8 (AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s... 32 0.41 16 (BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 38 0.42 20 (AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 34 0.42 14 (AE017263) Mesoplasma florum L1 complete genome. 34 0.44 23 (EI487427) PV_GBa0102F09.r PV_GBa Phaseolus vulgaris genomic... 48 0.45 2 (EJ593448) 1092961064637 Global-Ocean-Sampling_GS-29-01-01-1... 46 0.46 2 (AC180147) Strongylocentrotus purpuratus clone R3-4004D19, W... 42 0.48 7 (AC216836) Populus trichocarpa clone POP013-I22, complete se... 38 0.48 7 (AL137015) Human DNA sequence from clone RP13-272N16 on chro... 36 0.51 6 (AL731792) Mouse DNA sequence from clone RP23-189P1 on chrom... 44 0.51 3 (ER466591) 1092963926092 Global-Ocean-Sampling_GS-35-01-01-1... 34 0.54 3 (AC197586) Trichinella spiralis BAC clone TS195-28H12 from c... 38 0.56 8 (AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 34 0.59 11 (EJ961422) 1093022005691 Global-Ocean-Sampling_GS-30-02-01-1... 32 0.62 4 (AC097487) Homo sapiens BAC clone RP11-217C7 from 4, complet... 36 0.67 8 (AC196547) Homo sapiens chromosome 3 clone WI2-3154I13, comp... 44 0.71 3 (AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6... 36 0.72 8 (CR382398) Plasmodium falciparum chromosome 6, complete sequ... 34 0.73 16 (AC116985) Dictyostelium discoideum chromosome 2 map 6135249... 34 0.75 6 (AR551261) Sequence 6392 from patent US 6747137. 40 0.94 3 (AC158574) Mus musculus chromosome 7, clone RP24-275O6, comp... 42 0.94 5 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 32 1.1 13 (AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 38 1.1 9 (CT573220) Zebrafish DNA sequence from clone CH211-194O20 in... 48 1.1 1 (AC133607) Mus musculus BAC clone RP23-153N7 from chromosome... 48 1.1 1 (AM455835) Vitis vinifera contig VV78X086503.8, whole genome... 48 1.1 1 (AM440743) Vitis vinifera contig VV78X173913.4, whole genome... 48 1.1 1 (AC209584) Solanum lycopersicum DNA sequence from clone LE_H... 48 1.1 1 (AC114741) Homo sapiens BAC clone RP11-62N21 from 4, complet... 48 1.1 1 (AC159493) Bos taurus clone CH240-74J19, WORKING DRAFT SEQUE... 48 1.1 1 (CU571339) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 1.1 1 (AC204189) Tupaia belangeri clone CH275-363F8, WORKING DRAFT... 48 1.1 1 (AC203896) Zea mays chromosome 3 clone CH201-105I7; ZMMBBc01... 48 1.1 1 (AC201054) Strongylocentrotus purpuratus clone R3-12N3, WORK... 48 1.1 1 (ET061261) MUGQ_CH252P357J11Sp6_CP670_040 CHORI-252 Vervet M... 48 1.1 1 (DX390044) AGAA-aaa39f06.g1 AGAA Anolis smaragdinus genomic,... 48 1.1 1 (AV807753) Arabidopsis thaliana cDNA clone:RAFL09-51-N10, 3'... 48 1.1 1 (BQ513936) EST621351 Generation of a set of potato cDNA clon... 48 1.1 1 (CP000848) Rickettsia rickettsii str. 'Sheila Smith', comple... 48 1.1 1 (CP000766) Rickettsia rickettsii str. Iowa, complete genome. 48 1.1 1 (CP000683) Rickettsia massiliae MTU5, complete genome. 48 1.1 1 (AE008571) Rickettsia conorii str. Malish 7, section 3 of 11... 48 1.1 1 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 34 1.1 14 (BJ440883) Dictyostelium discoideum cDNA clone:ddv45d01, 3' ... 46 1.2 2 (AC116922) Dictyostelium discoideum chromosome 2 map 6061442... 34 1.2 8 (AC007625) Genomic sequence of Homo sapiens clone 2314F2 fro... 40 1.3 7
>(BJ343731) Dictyostelium discoideum cDNA clone:dda17b04, 3' end, single read. Length = 773
Score = 1489 bits (751), Expect = 0.0 Identities = 751/751 (100%) Strand = Plus / Minus
Query: 630 tatccatactttttatcaaatacaattacatggtcatcaaatggtttacaattagcatgt 689 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 773 tatccatactttttatcaaatacaattacatggtcatcaaatggtttacaattagcatgt 714
Query: 690 ggttcaactaatcatagttcaattctattatgggatgttgtatctagagtaccaacattc 749 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 713 ggttcaactaatcatagttcaattctattatgggatgttgtatctagagtaccaacattc 654
Query: 750 ataccacgttataatggtaactcattattagtttggtctccaaaaaatgattatctttta 809 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 653 ataccacgttataatggtaactcattattagtttggtctccaaaaaatgattatctttta 594
Query: 810 tcttgtggtggtaaaacttgtagaattttcgatatctcaaaatgggattacaataataaa 869 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 593 tcttgtggtggtaaaacttgtagaattttcgatatctcaaaatgggattacaataataaa 534
Query: 870 gaatggccaatgttaacaaattatcaaacaggatcatggaatggaaaaggtgaatattta 929 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 533 gaatggccaatgttaacaaattatcaaacaggatcatggaatggaaaaggtgaatattta 474
Query: 930 gcagttgcaagtggtgatagaattcagtttattcaatgtataaatagagcatttgaatca 989 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 473 gcagttgcaagtggtgatagaattcagtttattcaatgtataaatagagcatttgaatca 414
Query: 990 ggtggtgaattaatgtatgttgagaaaacttcaacctatagattacaaaatgttggtggt 1049 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 413 ggtggtgaattaatgtatgttgagaaaacttcaacctatagattacaaaatgttggtggt 354
Query: 1050 agtggtggtggttcaagtagtagtgaattatttttaggcggacatataaagaaaattgca 1109 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 353 agtggtggtggttcaagtagtagtgaattatttttaggcggacatataaagaaaattgca 294
Query: 1110 tggtcacctgatagtcaaagattggctgtcatcttttatttaaatagcaagagtagaaat 1169 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 293 tggtcacctgatagtcaaagattggctgtcatcttttatttaaatagcaagagtagaaat 234
Query: 1170 aatgatacttattgtgcaatctataaaattaaaacttatcctaaattttctgtaacacca 1229 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 233 aatgatacttattgtgcaatctataaaattaaaacttatcctaaattttctgtaacacca 174
Query: 1230 agaggtttcataaggtcaaaagatcaatcaattcaatcagtttcttttgtcccaaattat 1289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 173 agaggtttcataaggtcaaaagatcaatcaattcaatcagtttcttttgtcccaaattat 114
Query: 1290 aaaaaaggttctttattatcaattgcctacaatgatggaacaattaaatttttcccatta 1349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 113 aaaaaaggttctttattatcaattgcctacaatgatggaacaattaaatttttcccatta 54
Query: 1350 ttatatcaatataaacaataagaaaataaag 1380 ||||||||||||||||||||||||||||||| Sbjct: 53 ttatatcaatataaacaataagaaaataaag 23
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 2,150,245,600 Number of extensions: 141397767 Number of successful extensions: 12380710 Number of sequences better than 10.0: 297 Length of query: 1735 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1711 Effective length of database: 97,308,875,965 Effective search space: 166495486776115 Effective search space used: 166495486776115 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.24 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
2 |
VH (FL, L) |
0 |
VF (FL, S) |
1 |
AH (FL, L) |
0 |
AF (FL, S) |
2 |
SL (DIR, L) |
0 |
SS (DIR, S) |
2 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
2 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |